Multiple sequence alignment - TraesCS5D01G055700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G055700 chr5D 100.000 5819 0 0 1 5819 52253049 52258867 0.000000e+00 10746.0
1 TraesCS5D01G055700 chr5D 87.034 617 64 10 10 615 28027325 28026714 0.000000e+00 682.0
2 TraesCS5D01G055700 chr5D 86.614 635 62 17 1 615 390366684 390366053 0.000000e+00 680.0
3 TraesCS5D01G055700 chr5D 81.767 883 89 26 10 859 544788660 544787817 0.000000e+00 673.0
4 TraesCS5D01G055700 chr5D 100.000 80 0 0 2342 2421 384028751 384028830 1.310000e-31 148.0
5 TraesCS5D01G055700 chr5D 95.455 88 3 1 5046 5133 446918257 446918171 7.860000e-29 139.0
6 TraesCS5D01G055700 chr5D 100.000 74 0 0 2507 2580 52255462 52255389 2.830000e-28 137.0
7 TraesCS5D01G055700 chr5D 100.000 73 0 0 2507 2579 384028823 384028751 1.020000e-27 135.0
8 TraesCS5D01G055700 chr5D 93.407 91 5 1 5044 5134 310705354 310705265 3.660000e-27 134.0
9 TraesCS5D01G055700 chr5D 96.104 77 3 0 2507 2583 57651652 57651728 6.120000e-25 126.0
10 TraesCS5D01G055700 chr5D 85.714 84 6 4 2455 2535 52255583 52255503 3.740000e-12 84.2
11 TraesCS5D01G055700 chr5D 100.000 36 0 0 2477 2512 58665664 58665699 3.760000e-07 67.6
12 TraesCS5D01G055700 chr5D 97.297 37 0 1 2455 2491 52255434 52255469 1.750000e-05 62.1
13 TraesCS5D01G055700 chr5B 94.021 2793 121 14 2585 5371 55309291 55312043 0.000000e+00 4191.0
14 TraesCS5D01G055700 chr5B 94.872 1443 47 8 918 2340 55307860 55309295 0.000000e+00 2230.0
15 TraesCS5D01G055700 chr5B 87.252 604 64 12 23 620 10269406 10268810 0.000000e+00 676.0
16 TraesCS5D01G055700 chr5B 82.790 552 64 16 340 868 118506064 118505521 1.140000e-126 464.0
17 TraesCS5D01G055700 chr5B 82.143 560 62 20 281 815 35970953 35970407 4.140000e-121 446.0
18 TraesCS5D01G055700 chr5B 88.889 108 7 4 5030 5134 184285245 184285350 1.700000e-25 128.0
19 TraesCS5D01G055700 chr5B 89.655 87 4 4 5433 5515 55312143 55312228 7.970000e-19 106.0
20 TraesCS5D01G055700 chr5B 94.737 57 2 1 870 925 55307497 55307553 2.890000e-13 87.9
21 TraesCS5D01G055700 chr5B 94.231 52 1 1 5388 5437 55312041 55312092 1.740000e-10 78.7
22 TraesCS5D01G055700 chr5B 95.238 42 1 1 2455 2496 452236914 452236954 1.350000e-06 65.8
23 TraesCS5D01G055700 chr5A 95.308 1492 38 10 870 2340 41348420 41349900 0.000000e+00 2338.0
24 TraesCS5D01G055700 chr5A 95.515 1271 46 4 3796 5057 41350860 41352128 0.000000e+00 2021.0
25 TraesCS5D01G055700 chr5A 92.932 764 39 8 2581 3344 41349892 41350640 0.000000e+00 1098.0
26 TraesCS5D01G055700 chr5A 94.737 228 11 1 3373 3599 41350639 41350866 2.580000e-93 353.0
27 TraesCS5D01G055700 chr5A 85.251 339 28 10 5107 5437 41352125 41352449 4.350000e-86 329.0
28 TraesCS5D01G055700 chr5A 90.909 55 4 1 5766 5819 41352887 41352941 8.090000e-09 73.1
29 TraesCS5D01G055700 chr6D 86.740 822 81 14 10 826 420963563 420962765 0.000000e+00 889.0
30 TraesCS5D01G055700 chr6D 81.908 912 100 28 10 869 377836871 377837769 0.000000e+00 710.0
31 TraesCS5D01G055700 chr6D 86.349 630 62 18 1 615 422634103 422634723 0.000000e+00 665.0
32 TraesCS5D01G055700 chr6D 100.000 81 0 0 2341 2421 50735378 50735298 3.630000e-32 150.0
33 TraesCS5D01G055700 chr6D 100.000 78 0 0 2340 2417 468777117 468777194 1.690000e-30 145.0
34 TraesCS5D01G055700 chr6D 97.561 82 2 0 2339 2420 300898989 300899070 2.190000e-29 141.0
35 TraesCS5D01G055700 chr6D 97.561 82 2 0 2340 2421 300900266 300900185 2.190000e-29 141.0
36 TraesCS5D01G055700 chr6D 100.000 74 0 0 2507 2580 50735305 50735378 2.830000e-28 137.0
37 TraesCS5D01G055700 chr6D 100.000 74 0 0 2507 2580 468777191 468777118 2.830000e-28 137.0
38 TraesCS5D01G055700 chr6D 95.294 85 4 0 2337 2421 50733869 50733953 1.020000e-27 135.0
39 TraesCS5D01G055700 chr6D 94.253 87 4 1 5047 5133 199210413 199210328 1.320000e-26 132.0
40 TraesCS5D01G055700 chr6D 98.649 74 1 0 2507 2580 300899064 300898991 1.320000e-26 132.0
41 TraesCS5D01G055700 chr6D 94.186 86 3 2 5048 5133 291237010 291236927 4.730000e-26 130.0
42 TraesCS5D01G055700 chr6D 90.099 101 6 4 5033 5133 20553657 20553753 1.700000e-25 128.0
43 TraesCS5D01G055700 chr6D 97.297 74 2 0 2507 2580 300900192 300900265 6.120000e-25 126.0
44 TraesCS5D01G055700 chr6D 97.222 72 2 0 2509 2580 283809998 283809927 7.920000e-24 122.0
45 TraesCS5D01G055700 chr6D 96.000 75 3 0 2507 2581 441673156 441673230 7.920000e-24 122.0
46 TraesCS5D01G055700 chr6D 94.805 77 4 0 2507 2583 50733946 50733870 2.850000e-23 121.0
47 TraesCS5D01G055700 chr6D 100.000 36 0 0 2477 2512 400784519 400784554 3.760000e-07 67.6
48 TraesCS5D01G055700 chr6D 100.000 36 0 0 2477 2512 468778239 468778204 3.760000e-07 67.6
49 TraesCS5D01G055700 chr6D 100.000 36 0 0 2477 2512 469317258 469317223 3.760000e-07 67.6
50 TraesCS5D01G055700 chr6D 95.238 42 1 1 2455 2496 380033312 380033352 1.350000e-06 65.8
51 TraesCS5D01G055700 chr6D 95.238 42 1 1 2455 2496 456324341 456324301 1.350000e-06 65.8
52 TraesCS5D01G055700 chr6D 95.122 41 0 2 2455 2494 456322618 456322657 4.870000e-06 63.9
53 TraesCS5D01G055700 chr6D 97.222 36 1 0 2477 2512 50733880 50733915 1.750000e-05 62.1
54 TraesCS5D01G055700 chr6D 95.000 40 1 1 2455 2494 50735333 50735295 1.750000e-05 62.1
55 TraesCS5D01G055700 chr6D 97.222 36 1 0 2477 2512 50735371 50735336 1.750000e-05 62.1
56 TraesCS5D01G055700 chr6D 95.000 40 1 1 2455 2494 300900220 300900182 1.750000e-05 62.1
57 TraesCS5D01G055700 chr6D 97.222 36 1 0 2455 2490 441673184 441673149 1.750000e-05 62.1
58 TraesCS5D01G055700 chr6D 97.222 36 0 1 2455 2490 300899036 300899070 6.300000e-05 60.2
59 TraesCS5D01G055700 chr6D 100.000 32 0 0 2455 2486 468777163 468777194 6.300000e-05 60.2
60 TraesCS5D01G055700 chr6D 100.000 31 0 0 2455 2485 97658169 97658199 2.260000e-04 58.4
61 TraesCS5D01G055700 chr4D 84.641 905 86 29 10 868 483986298 483987195 0.000000e+00 852.0
62 TraesCS5D01G055700 chr4D 86.971 614 58 15 14 615 8880864 8880261 0.000000e+00 671.0
63 TraesCS5D01G055700 chr4D 100.000 78 0 0 2342 2419 62735094 62735171 1.690000e-30 145.0
64 TraesCS5D01G055700 chr4D 97.561 82 2 0 2340 2421 456275957 456276038 2.190000e-29 141.0
65 TraesCS5D01G055700 chr4D 97.531 81 2 0 2341 2421 62736138 62736058 7.860000e-29 139.0
66 TraesCS5D01G055700 chr4D 100.000 73 0 0 2507 2579 62735166 62735094 1.020000e-27 135.0
67 TraesCS5D01G055700 chr4D 95.349 86 3 1 5049 5134 99662490 99662406 1.020000e-27 135.0
68 TraesCS5D01G055700 chr4D 93.258 89 5 1 5046 5134 324227847 324227760 4.730000e-26 130.0
69 TraesCS5D01G055700 chr4D 93.258 89 5 1 5045 5133 469582269 469582356 4.730000e-26 130.0
70 TraesCS5D01G055700 chr4D 93.182 88 5 1 5046 5133 270678547 270678633 1.700000e-25 128.0
71 TraesCS5D01G055700 chr4D 98.611 72 1 0 2509 2580 456276029 456275958 1.700000e-25 128.0
72 TraesCS5D01G055700 chr4D 97.297 74 2 0 2507 2580 62736065 62736138 6.120000e-25 126.0
73 TraesCS5D01G055700 chr4D 93.103 87 5 1 5047 5133 252173789 252173704 6.120000e-25 126.0
74 TraesCS5D01G055700 chr4D 86.364 110 13 2 5025 5133 48595897 48595789 1.020000e-22 119.0
75 TraesCS5D01G055700 chr4D 100.000 33 0 0 2455 2487 62735138 62735170 1.750000e-05 62.1
76 TraesCS5D01G055700 chr3B 83.008 871 120 16 10 868 683389925 683390779 0.000000e+00 763.0
77 TraesCS5D01G055700 chr4A 86.977 622 61 16 1 609 29181547 29182161 0.000000e+00 682.0
78 TraesCS5D01G055700 chr4A 86.971 614 66 11 10 620 498270247 498270849 0.000000e+00 678.0
79 TraesCS5D01G055700 chr6A 81.061 792 94 24 119 858 601956508 601957295 1.090000e-161 580.0
80 TraesCS5D01G055700 chr6A 94.318 88 4 1 5046 5133 190660436 190660350 3.660000e-27 134.0
81 TraesCS5D01G055700 chr6A 92.553 94 6 1 5041 5134 266828768 266828676 3.660000e-27 134.0
82 TraesCS5D01G055700 chr6A 92.553 94 6 1 5041 5134 266868385 266868293 3.660000e-27 134.0
83 TraesCS5D01G055700 chr3A 87.324 213 19 4 656 866 79183617 79183823 2.710000e-58 237.0
84 TraesCS5D01G055700 chr3A 100.000 79 0 0 2342 2420 130847813 130847735 4.700000e-31 147.0
85 TraesCS5D01G055700 chr3A 100.000 74 0 0 2507 2580 57209636 57209709 2.830000e-28 137.0
86 TraesCS5D01G055700 chr3A 91.176 102 5 3 5033 5133 710277870 710277968 1.020000e-27 135.0
87 TraesCS5D01G055700 chr7A 87.310 197 17 4 672 866 241176368 241176178 9.820000e-53 219.0
88 TraesCS5D01G055700 chr1D 84.793 217 31 1 652 866 413200891 413201107 3.530000e-52 217.0
89 TraesCS5D01G055700 chr1D 85.116 215 26 3 656 866 143961531 143961743 1.270000e-51 215.0
90 TraesCS5D01G055700 chr1D 89.720 107 9 2 5030 5135 64145420 64145525 1.020000e-27 135.0
91 TraesCS5D01G055700 chr1D 93.333 90 5 1 5045 5133 351546502 351546591 1.320000e-26 132.0
92 TraesCS5D01G055700 chr1D 92.473 93 5 2 5042 5133 462985055 462985146 1.320000e-26 132.0
93 TraesCS5D01G055700 chr1D 98.611 72 1 0 2509 2580 38791238 38791167 1.700000e-25 128.0
94 TraesCS5D01G055700 chr1D 87.619 105 11 2 5031 5134 467803492 467803595 2.850000e-23 121.0
95 TraesCS5D01G055700 chr1D 97.500 40 0 1 2455 2494 12177543 12177505 3.760000e-07 67.6
96 TraesCS5D01G055700 chr1D 100.000 34 0 0 2455 2488 457071634 457071601 4.870000e-06 63.9
97 TraesCS5D01G055700 chr1D 97.297 37 0 1 2455 2491 212851508 212851473 1.750000e-05 62.1
98 TraesCS5D01G055700 chr7D 100.000 82 0 0 2340 2421 127282485 127282404 1.010000e-32 152.0
99 TraesCS5D01G055700 chr7D 98.765 81 1 0 2341 2421 127281190 127281270 1.690000e-30 145.0
100 TraesCS5D01G055700 chr7D 100.000 74 0 0 2507 2580 127282411 127282484 2.830000e-28 137.0
101 TraesCS5D01G055700 chr7D 98.667 75 1 0 2507 2581 127281263 127281189 3.660000e-27 134.0
102 TraesCS5D01G055700 chr3D 100.000 81 0 0 2341 2421 1349013 1348933 3.630000e-32 150.0
103 TraesCS5D01G055700 chr3D 98.780 82 1 0 2340 2421 1347747 1347828 4.700000e-31 147.0
104 TraesCS5D01G055700 chr3D 100.000 74 0 0 2507 2580 1348940 1349013 2.830000e-28 137.0
105 TraesCS5D01G055700 chr3D 92.632 95 5 2 5040 5133 497907945 497908038 1.020000e-27 135.0
106 TraesCS5D01G055700 chr3D 98.649 74 1 0 2507 2580 1347821 1347748 1.320000e-26 132.0
107 TraesCS5D01G055700 chr3D 98.649 74 1 0 2507 2580 272101019 272100946 1.320000e-26 132.0
108 TraesCS5D01G055700 chr3D 89.423 104 8 3 5032 5133 497961367 497961469 1.700000e-25 128.0
109 TraesCS5D01G055700 chr3D 100.000 36 0 0 2477 2512 272102110 272102075 3.760000e-07 67.6
110 TraesCS5D01G055700 chr2D 100.000 81 0 0 2341 2421 570138067 570138147 3.630000e-32 150.0
111 TraesCS5D01G055700 chr2D 98.810 84 1 0 2338 2421 602768501 602768584 3.630000e-32 150.0
112 TraesCS5D01G055700 chr2D 98.765 81 1 0 2341 2421 592035264 592035184 1.690000e-30 145.0
113 TraesCS5D01G055700 chr2D 100.000 75 0 0 2507 2581 602768577 602768503 7.860000e-29 139.0
114 TraesCS5D01G055700 chr2D 100.000 74 0 0 2507 2580 570138140 570138067 2.830000e-28 137.0
115 TraesCS5D01G055700 chr2D 98.684 76 1 0 2507 2582 592035191 592035266 1.020000e-27 135.0
116 TraesCS5D01G055700 chr2D 89.423 104 9 2 5031 5133 643235806 643235908 4.730000e-26 130.0
117 TraesCS5D01G055700 chr2D 95.238 42 1 1 2455 2496 520036695 520036735 1.350000e-06 65.8
118 TraesCS5D01G055700 chr2D 97.368 38 0 1 2455 2492 531318166 531318130 4.870000e-06 63.9
119 TraesCS5D01G055700 chr2A 100.000 81 0 0 2341 2421 766716884 766716804 3.630000e-32 150.0
120 TraesCS5D01G055700 chr2A 98.780 82 1 0 2340 2421 20800178 20800097 4.700000e-31 147.0
121 TraesCS5D01G055700 chr2A 100.000 74 0 0 2507 2580 766716811 766716884 2.830000e-28 137.0
122 TraesCS5D01G055700 chr7B 94.565 92 3 2 5042 5133 428966932 428966843 2.190000e-29 141.0
123 TraesCS5D01G055700 chr2B 93.684 95 5 1 5041 5135 483453044 483452951 2.190000e-29 141.0
124 TraesCS5D01G055700 chrUn 97.531 81 2 0 2341 2421 29857453 29857533 7.860000e-29 139.0
125 TraesCS5D01G055700 chrUn 96.386 83 3 0 2339 2421 21561153 21561071 2.830000e-28 137.0
126 TraesCS5D01G055700 chrUn 95.402 87 3 1 2335 2421 29858607 29858522 2.830000e-28 137.0
127 TraesCS5D01G055700 chrUn 96.341 82 3 0 2340 2421 21560238 21560319 1.020000e-27 135.0
128 TraesCS5D01G055700 chrUn 92.553 94 6 1 5041 5134 316200630 316200538 3.660000e-27 134.0
129 TraesCS5D01G055700 chrUn 92.473 93 6 1 5041 5133 86631072 86630981 1.320000e-26 132.0
130 TraesCS5D01G055700 chrUn 98.611 72 1 0 2509 2580 29857524 29857453 1.700000e-25 128.0
131 TraesCS5D01G055700 chrUn 92.222 90 6 1 5046 5135 29029200 29029288 6.120000e-25 126.0
132 TraesCS5D01G055700 chrUn 98.571 70 1 0 2511 2580 21560308 21560239 2.200000e-24 124.0
133 TraesCS5D01G055700 chrUn 92.135 89 6 1 5046 5134 101630798 101630885 2.200000e-24 124.0
134 TraesCS5D01G055700 chrUn 97.222 72 2 0 2509 2580 21561080 21561151 7.920000e-24 122.0
135 TraesCS5D01G055700 chrUn 97.222 72 2 0 2509 2580 29858531 29858602 7.920000e-24 122.0
136 TraesCS5D01G055700 chrUn 91.954 87 6 1 5048 5134 36436975 36436890 2.850000e-23 121.0
137 TraesCS5D01G055700 chrUn 91.954 87 6 1 5048 5134 180382669 180382754 2.850000e-23 121.0
138 TraesCS5D01G055700 chrUn 91.011 89 7 1 5047 5135 244923897 244923810 1.020000e-22 119.0
139 TraesCS5D01G055700 chrUn 91.011 89 7 1 5047 5135 287095785 287095698 1.020000e-22 119.0
140 TraesCS5D01G055700 chrUn 90.909 88 7 1 5048 5135 16901625 16901711 3.680000e-22 117.0
141 TraesCS5D01G055700 chrUn 88.119 101 9 3 5028 5128 110321675 110321772 3.680000e-22 117.0
142 TraesCS5D01G055700 chrUn 91.765 85 6 1 2338 2421 455105672 455105588 3.680000e-22 117.0
143 TraesCS5D01G055700 chrUn 86.792 106 11 3 5028 5133 110290430 110290532 1.330000e-21 115.0
144 TraesCS5D01G055700 chrUn 86.792 106 11 3 5028 5133 187683139 187683241 1.330000e-21 115.0
145 TraesCS5D01G055700 chrUn 89.247 93 9 1 5041 5133 307658754 307658663 1.330000e-21 115.0
146 TraesCS5D01G055700 chrUn 90.244 82 6 2 2339 2419 87835677 87835597 7.970000e-19 106.0
147 TraesCS5D01G055700 chrUn 90.244 82 6 2 2339 2419 361532301 361532221 7.970000e-19 106.0
148 TraesCS5D01G055700 chrUn 91.892 74 6 0 2507 2580 455105596 455105669 2.870000e-18 104.0
149 TraesCS5D01G055700 chrUn 95.082 61 2 1 2509 2568 87835604 87835664 1.730000e-15 95.3
150 TraesCS5D01G055700 chrUn 95.082 61 2 1 2509 2568 361532228 361532288 1.730000e-15 95.3
151 TraesCS5D01G055700 chrUn 94.444 36 2 0 2477 2512 455105662 455105627 8.150000e-04 56.5
152 TraesCS5D01G055700 chr6B 93.548 93 5 1 5041 5133 122970913 122970822 2.830000e-28 137.0
153 TraesCS5D01G055700 chr6B 93.478 92 5 1 5042 5133 13827616 13827526 1.020000e-27 135.0
154 TraesCS5D01G055700 chr1B 95.402 87 3 1 5048 5134 593927077 593927162 2.830000e-28 137.0
155 TraesCS5D01G055700 chr1B 94.382 89 4 1 5045 5133 169531057 169531144 1.020000e-27 135.0
156 TraesCS5D01G055700 chr1B 90.816 98 7 2 5037 5133 7291975 7292071 4.730000e-26 130.0
157 TraesCS5D01G055700 chr1A 95.402 87 3 1 5047 5133 30338677 30338592 2.830000e-28 137.0
158 TraesCS5D01G055700 chr1A 92.473 93 5 2 5041 5133 518662851 518662761 1.320000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G055700 chr5D 52253049 52258867 5818 False 5404.05 10746 98.6485 1 5819 2 chr5D.!!$F4 5818
1 TraesCS5D01G055700 chr5D 28026714 28027325 611 True 682.00 682 87.0340 10 615 1 chr5D.!!$R1 605
2 TraesCS5D01G055700 chr5D 390366053 390366684 631 True 680.00 680 86.6140 1 615 1 chr5D.!!$R4 614
3 TraesCS5D01G055700 chr5D 544787817 544788660 843 True 673.00 673 81.7670 10 859 1 chr5D.!!$R6 849
4 TraesCS5D01G055700 chr5B 55307497 55312228 4731 False 1338.72 4191 93.5032 870 5515 5 chr5B.!!$F3 4645
5 TraesCS5D01G055700 chr5B 10268810 10269406 596 True 676.00 676 87.2520 23 620 1 chr5B.!!$R1 597
6 TraesCS5D01G055700 chr5B 118505521 118506064 543 True 464.00 464 82.7900 340 868 1 chr5B.!!$R3 528
7 TraesCS5D01G055700 chr5B 35970407 35970953 546 True 446.00 446 82.1430 281 815 1 chr5B.!!$R2 534
8 TraesCS5D01G055700 chr5A 41348420 41352941 4521 False 1035.35 2338 92.4420 870 5819 6 chr5A.!!$F1 4949
9 TraesCS5D01G055700 chr6D 420962765 420963563 798 True 889.00 889 86.7400 10 826 1 chr6D.!!$R4 816
10 TraesCS5D01G055700 chr6D 377836871 377837769 898 False 710.00 710 81.9080 10 869 1 chr6D.!!$F3 859
11 TraesCS5D01G055700 chr6D 422634103 422634723 620 False 665.00 665 86.3490 1 615 1 chr6D.!!$F6 614
12 TraesCS5D01G055700 chr4D 483986298 483987195 897 False 852.00 852 84.6410 10 868 1 chr4D.!!$F4 858
13 TraesCS5D01G055700 chr4D 8880261 8880864 603 True 671.00 671 86.9710 14 615 1 chr4D.!!$R1 601
14 TraesCS5D01G055700 chr3B 683389925 683390779 854 False 763.00 763 83.0080 10 868 1 chr3B.!!$F1 858
15 TraesCS5D01G055700 chr4A 29181547 29182161 614 False 682.00 682 86.9770 1 609 1 chr4A.!!$F1 608
16 TraesCS5D01G055700 chr4A 498270247 498270849 602 False 678.00 678 86.9710 10 620 1 chr4A.!!$F2 610
17 TraesCS5D01G055700 chr6A 601956508 601957295 787 False 580.00 580 81.0610 119 858 1 chr6A.!!$F1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 963 0.459411 AAAAGCCAAAAACGCGTGCT 60.459 45.0 14.98 14.68 0.00 4.40 F
2464 3033 0.248866 CTCCGTTGCAAACCACCAAC 60.249 55.0 0.00 0.00 46.28 3.77 F
2517 3086 0.037590 TGGCTAGGTTTGCAACGGAT 59.962 50.0 0.00 0.00 0.00 4.18 F
2540 3109 1.021202 CGAGTTGGTGGTTTTCTGCA 58.979 50.0 0.00 0.00 0.00 4.41 F
3771 4342 0.094046 CGACGTACCATTTGGCGAAC 59.906 55.0 0.00 0.00 39.32 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2498 3067 0.037590 ATCCGTTGCAAACCTAGCCA 59.962 50.000 0.00 0.00 46.28 4.75 R
3583 4154 1.070289 AGTTCGGAACTGTTCTGTCCC 59.930 52.381 21.86 15.05 41.01 4.46 R
3753 4324 1.149987 TGTTCGCCAAATGGTACGTC 58.850 50.000 0.00 0.00 37.57 4.34 R
4387 4967 2.502142 ATTGCAGCTGATGGTGAGAA 57.498 45.000 20.43 0.00 43.76 2.87 R
5566 6267 0.035458 CTCAGGGGTGTGACAACTCC 59.965 60.000 0.00 0.00 41.49 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 47 1.393883 GTCCAAATCTCGAACCGCTTC 59.606 52.381 0.00 0.00 0.00 3.86
92 97 5.945784 TCTTCAAAACTAGATCCCATGTTGG 59.054 40.000 0.00 0.00 37.25 3.77
162 171 0.898326 ACCGGGAGCATGGGTTTTTC 60.898 55.000 6.32 0.00 0.00 2.29
432 557 1.493772 CGAAAGCACAACCGTGACTA 58.506 50.000 0.00 0.00 46.80 2.59
737 963 0.459411 AAAAGCCAAAAACGCGTGCT 60.459 45.000 14.98 14.68 0.00 4.40
749 975 5.898630 AAACGCGTGCTGAAAAATAAAAT 57.101 30.435 14.98 0.00 0.00 1.82
750 976 6.994868 AAACGCGTGCTGAAAAATAAAATA 57.005 29.167 14.98 0.00 0.00 1.40
841 1071 1.377202 GATTGTTGCGAGGCTCCCA 60.377 57.895 9.32 2.72 0.00 4.37
868 1100 1.578023 CGCGTTAACTAGTTGCTCTCG 59.422 52.381 18.56 14.48 0.00 4.04
874 1106 5.059465 CGTTAACTAGTTGCTCTCGAGAAAC 59.941 44.000 18.56 17.90 45.38 2.78
925 1471 1.953686 TCCAACTTCGAAAGCCCAAAG 59.046 47.619 0.00 0.00 0.00 2.77
1004 1553 1.079127 CCCGAGCGACAGAAATGGT 60.079 57.895 0.00 0.00 0.00 3.55
1225 1774 4.918129 CCACCCGATACGGCGTCG 62.918 72.222 19.21 15.68 46.86 5.12
1377 1926 2.789203 CGTACGCTTCTTGCTCGCC 61.789 63.158 0.52 0.00 40.11 5.54
1386 1935 1.299773 CTTGCTCGCCTCTCCGATC 60.300 63.158 0.00 0.00 36.54 3.69
1429 1978 2.096496 GTGCAGAATGATGTAAGCGCTT 59.904 45.455 27.97 27.97 39.69 4.68
1436 1985 2.279741 TGATGTAAGCGCTTCATGGAC 58.720 47.619 28.82 19.20 0.00 4.02
1447 1996 1.745087 CTTCATGGACGGATTGGTTGG 59.255 52.381 0.00 0.00 0.00 3.77
1448 1997 0.695924 TCATGGACGGATTGGTTGGT 59.304 50.000 0.00 0.00 0.00 3.67
1449 1998 1.074727 TCATGGACGGATTGGTTGGTT 59.925 47.619 0.00 0.00 0.00 3.67
1450 1999 1.202114 CATGGACGGATTGGTTGGTTG 59.798 52.381 0.00 0.00 0.00 3.77
1451 2000 0.538516 TGGACGGATTGGTTGGTTGG 60.539 55.000 0.00 0.00 0.00 3.77
1587 2136 3.361281 TTCTTCAGCCTCATGAGCATT 57.639 42.857 17.76 1.66 0.00 3.56
1833 2382 9.111519 TGCTCAGGTATTCCCTTATTATAATGA 57.888 33.333 8.28 0.00 42.73 2.57
2340 2909 4.202503 ACCAGCAATGATGTAATCCTAGGG 60.203 45.833 9.46 0.00 44.73 3.53
2341 2910 4.042062 CCAGCAATGATGTAATCCTAGGGA 59.958 45.833 9.46 0.00 44.73 4.20
2342 2911 5.243981 CAGCAATGATGTAATCCTAGGGAG 58.756 45.833 9.46 0.00 44.73 4.30
2343 2912 4.910304 AGCAATGATGTAATCCTAGGGAGT 59.090 41.667 9.46 0.00 44.73 3.85
2344 2913 5.012561 AGCAATGATGTAATCCTAGGGAGTC 59.987 44.000 9.46 0.18 44.73 3.36
2345 2914 5.221722 GCAATGATGTAATCCTAGGGAGTCA 60.222 44.000 9.46 5.88 44.73 3.41
2346 2915 6.688922 GCAATGATGTAATCCTAGGGAGTCAA 60.689 42.308 9.46 0.00 44.73 3.18
2347 2916 7.456725 CAATGATGTAATCCTAGGGAGTCAAT 58.543 38.462 9.46 0.00 44.73 2.57
2348 2917 7.639062 ATGATGTAATCCTAGGGAGTCAATT 57.361 36.000 9.46 2.59 44.73 2.32
2349 2918 6.830912 TGATGTAATCCTAGGGAGTCAATTG 58.169 40.000 9.46 0.00 44.73 2.32
2350 2919 5.036117 TGTAATCCTAGGGAGTCAATTGC 57.964 43.478 9.46 4.46 34.05 3.56
2351 2920 4.473196 TGTAATCCTAGGGAGTCAATTGCA 59.527 41.667 9.46 7.09 34.05 4.08
2352 2921 4.591321 AATCCTAGGGAGTCAATTGCAA 57.409 40.909 9.46 0.00 34.05 4.08
2353 2922 3.634397 TCCTAGGGAGTCAATTGCAAG 57.366 47.619 9.46 0.00 0.00 4.01
2354 2923 3.181329 TCCTAGGGAGTCAATTGCAAGA 58.819 45.455 9.46 0.00 0.00 3.02
2355 2924 3.587061 TCCTAGGGAGTCAATTGCAAGAA 59.413 43.478 9.46 0.00 0.00 2.52
2356 2925 4.042809 TCCTAGGGAGTCAATTGCAAGAAA 59.957 41.667 9.46 0.00 0.00 2.52
2357 2926 4.156739 CCTAGGGAGTCAATTGCAAGAAAC 59.843 45.833 4.94 2.49 0.00 2.78
2358 2927 2.893489 AGGGAGTCAATTGCAAGAAACC 59.107 45.455 4.94 4.83 0.00 3.27
2359 2928 2.627699 GGGAGTCAATTGCAAGAAACCA 59.372 45.455 4.94 0.00 0.00 3.67
2360 2929 3.552890 GGGAGTCAATTGCAAGAAACCAC 60.553 47.826 4.94 0.00 0.00 4.16
2361 2930 3.552890 GGAGTCAATTGCAAGAAACCACC 60.553 47.826 4.94 5.79 0.00 4.61
2362 2931 3.030291 AGTCAATTGCAAGAAACCACCA 58.970 40.909 4.94 0.00 0.00 4.17
2363 2932 3.123050 GTCAATTGCAAGAAACCACCAC 58.877 45.455 4.94 0.00 0.00 4.16
2364 2933 2.762887 TCAATTGCAAGAAACCACCACA 59.237 40.909 4.94 0.00 0.00 4.17
2365 2934 3.387374 TCAATTGCAAGAAACCACCACAT 59.613 39.130 4.94 0.00 0.00 3.21
2366 2935 4.128643 CAATTGCAAGAAACCACCACATT 58.871 39.130 4.94 0.00 0.00 2.71
2367 2936 3.902881 TTGCAAGAAACCACCACATTT 57.097 38.095 0.00 0.00 0.00 2.32
2368 2937 3.176552 TGCAAGAAACCACCACATTTG 57.823 42.857 0.00 0.00 0.00 2.32
2369 2938 2.499289 TGCAAGAAACCACCACATTTGT 59.501 40.909 0.00 0.00 0.00 2.83
2370 2939 2.865551 GCAAGAAACCACCACATTTGTG 59.134 45.455 3.67 3.67 45.23 3.33
2381 2950 2.676076 CACATTTGTGGCTAGGTTTGC 58.324 47.619 2.69 0.00 42.10 3.68
2382 2951 2.035704 CACATTTGTGGCTAGGTTTGCA 59.964 45.455 2.69 0.00 42.10 4.08
2383 2952 2.297033 ACATTTGTGGCTAGGTTTGCAG 59.703 45.455 0.00 0.00 0.00 4.41
2384 2953 2.356665 TTTGTGGCTAGGTTTGCAGA 57.643 45.000 0.00 0.00 0.00 4.26
2385 2954 2.356665 TTGTGGCTAGGTTTGCAGAA 57.643 45.000 0.00 0.00 0.00 3.02
2386 2955 2.356665 TGTGGCTAGGTTTGCAGAAA 57.643 45.000 0.00 0.00 0.00 2.52
2387 2956 2.660572 TGTGGCTAGGTTTGCAGAAAA 58.339 42.857 0.00 0.00 0.00 2.29
2388 2957 2.360801 TGTGGCTAGGTTTGCAGAAAAC 59.639 45.455 0.00 0.00 46.32 2.43
2396 2965 3.245518 GTTTGCAGAAAACCACCAACT 57.754 42.857 0.00 0.00 42.06 3.16
2397 2966 3.186909 GTTTGCAGAAAACCACCAACTC 58.813 45.455 0.00 0.00 42.06 3.01
2398 2967 1.021202 TGCAGAAAACCACCAACTCG 58.979 50.000 0.00 0.00 0.00 4.18
2399 2968 1.021968 GCAGAAAACCACCAACTCGT 58.978 50.000 0.00 0.00 0.00 4.18
2400 2969 1.404035 GCAGAAAACCACCAACTCGTT 59.596 47.619 0.00 0.00 0.00 3.85
2401 2970 2.614983 GCAGAAAACCACCAACTCGTTA 59.385 45.455 0.00 0.00 0.00 3.18
2402 2971 3.065648 GCAGAAAACCACCAACTCGTTAA 59.934 43.478 0.00 0.00 0.00 2.01
2403 2972 4.261447 GCAGAAAACCACCAACTCGTTAAT 60.261 41.667 0.00 0.00 0.00 1.40
2404 2973 5.449304 CAGAAAACCACCAACTCGTTAATC 58.551 41.667 0.00 0.00 0.00 1.75
2405 2974 4.517832 AGAAAACCACCAACTCGTTAATCC 59.482 41.667 0.00 0.00 0.00 3.01
2406 2975 2.088950 ACCACCAACTCGTTAATCCG 57.911 50.000 0.00 0.00 0.00 4.18
2407 2976 1.345415 ACCACCAACTCGTTAATCCGT 59.655 47.619 0.00 0.00 0.00 4.69
2408 2977 2.224354 ACCACCAACTCGTTAATCCGTT 60.224 45.455 0.00 0.00 0.00 4.44
2409 2978 2.158841 CCACCAACTCGTTAATCCGTTG 59.841 50.000 0.00 0.00 37.18 4.10
2410 2979 1.802365 ACCAACTCGTTAATCCGTTGC 59.198 47.619 0.00 0.00 36.36 4.17
2411 2980 1.801771 CCAACTCGTTAATCCGTTGCA 59.198 47.619 0.00 0.00 36.36 4.08
2412 2981 2.224549 CCAACTCGTTAATCCGTTGCAA 59.775 45.455 0.00 0.00 36.36 4.08
2413 2982 3.304123 CCAACTCGTTAATCCGTTGCAAA 60.304 43.478 0.00 0.00 36.36 3.68
2414 2983 4.283678 CAACTCGTTAATCCGTTGCAAAA 58.716 39.130 0.00 0.00 31.62 2.44
2415 2984 4.555348 ACTCGTTAATCCGTTGCAAAAA 57.445 36.364 0.00 0.00 0.00 1.94
2430 2999 2.815384 AAAAACACCCCCTCCGTTG 58.185 52.632 0.00 0.00 0.00 4.10
2431 3000 1.396607 AAAAACACCCCCTCCGTTGC 61.397 55.000 0.00 0.00 0.00 4.17
2432 3001 2.575455 AAAACACCCCCTCCGTTGCA 62.575 55.000 0.00 0.00 0.00 4.08
2433 3002 2.575455 AAACACCCCCTCCGTTGCAA 62.575 55.000 0.00 0.00 0.00 4.08
2434 3003 2.203422 CACCCCCTCCGTTGCAAA 60.203 61.111 0.00 0.00 0.00 3.68
2435 3004 1.830408 CACCCCCTCCGTTGCAAAA 60.830 57.895 0.00 0.00 0.00 2.44
2436 3005 1.075896 ACCCCCTCCGTTGCAAAAA 60.076 52.632 0.00 0.00 0.00 1.94
2458 3027 2.989253 CCCCCTCCGTTGCAAACC 60.989 66.667 0.00 0.00 46.28 3.27
2459 3028 2.203422 CCCCTCCGTTGCAAACCA 60.203 61.111 0.00 0.00 46.28 3.67
2460 3029 2.561037 CCCCTCCGTTGCAAACCAC 61.561 63.158 0.00 0.00 46.28 4.16
2461 3030 2.561037 CCCTCCGTTGCAAACCACC 61.561 63.158 0.00 0.00 46.28 4.61
2462 3031 1.826054 CCTCCGTTGCAAACCACCA 60.826 57.895 0.00 0.00 46.28 4.17
2463 3032 1.388065 CCTCCGTTGCAAACCACCAA 61.388 55.000 0.00 0.00 46.28 3.67
2464 3033 0.248866 CTCCGTTGCAAACCACCAAC 60.249 55.000 0.00 0.00 46.28 3.77
2465 3034 0.681564 TCCGTTGCAAACCACCAACT 60.682 50.000 0.00 0.00 46.28 3.16
2466 3035 0.248866 CCGTTGCAAACCACCAACTC 60.249 55.000 0.00 0.00 46.28 3.01
2467 3036 0.591236 CGTTGCAAACCACCAACTCG 60.591 55.000 0.00 0.00 46.28 4.18
2468 3037 0.454196 GTTGCAAACCACCAACTCGT 59.546 50.000 0.00 0.00 42.21 4.18
2469 3038 1.135228 GTTGCAAACCACCAACTCGTT 60.135 47.619 0.00 0.00 42.21 3.85
2470 3039 2.039818 TGCAAACCACCAACTCGTTA 57.960 45.000 0.00 0.00 0.00 3.18
2471 3040 2.366533 TGCAAACCACCAACTCGTTAA 58.633 42.857 0.00 0.00 0.00 2.01
2472 3041 2.952978 TGCAAACCACCAACTCGTTAAT 59.047 40.909 0.00 0.00 0.00 1.40
2473 3042 3.003897 TGCAAACCACCAACTCGTTAATC 59.996 43.478 0.00 0.00 0.00 1.75
2474 3043 3.610821 GCAAACCACCAACTCGTTAATCC 60.611 47.826 0.00 0.00 0.00 3.01
2475 3044 2.088950 ACCACCAACTCGTTAATCCG 57.911 50.000 0.00 0.00 0.00 4.18
2476 3045 1.345415 ACCACCAACTCGTTAATCCGT 59.655 47.619 0.00 0.00 0.00 4.69
2477 3046 2.224354 ACCACCAACTCGTTAATCCGTT 60.224 45.455 0.00 0.00 0.00 4.44
2478 3047 2.158841 CCACCAACTCGTTAATCCGTTG 59.841 50.000 0.00 0.00 37.18 4.10
2479 3048 1.802365 ACCAACTCGTTAATCCGTTGC 59.198 47.619 0.00 0.00 36.36 4.17
2480 3049 1.801771 CCAACTCGTTAATCCGTTGCA 59.198 47.619 0.00 0.00 36.36 4.08
2481 3050 2.224549 CCAACTCGTTAATCCGTTGCAA 59.775 45.455 0.00 0.00 36.36 4.08
2482 3051 3.304123 CCAACTCGTTAATCCGTTGCAAA 60.304 43.478 0.00 0.00 36.36 3.68
2483 3052 4.283678 CAACTCGTTAATCCGTTGCAAAA 58.716 39.130 0.00 0.00 31.62 2.44
2484 3053 4.555348 ACTCGTTAATCCGTTGCAAAAA 57.445 36.364 0.00 0.00 0.00 1.94
2510 3079 2.676076 CACATTTGTGGCTAGGTTTGC 58.324 47.619 2.69 0.00 42.10 3.68
2511 3080 2.035704 CACATTTGTGGCTAGGTTTGCA 59.964 45.455 2.69 0.00 42.10 4.08
2512 3081 2.697751 ACATTTGTGGCTAGGTTTGCAA 59.302 40.909 0.00 0.00 0.00 4.08
2513 3082 2.880963 TTTGTGGCTAGGTTTGCAAC 57.119 45.000 0.00 0.00 35.08 4.17
2514 3083 0.665835 TTGTGGCTAGGTTTGCAACG 59.334 50.000 0.00 0.00 37.18 4.10
2515 3084 1.169661 TGTGGCTAGGTTTGCAACGG 61.170 55.000 0.00 0.00 37.18 4.44
2516 3085 0.887387 GTGGCTAGGTTTGCAACGGA 60.887 55.000 0.00 0.00 0.00 4.69
2517 3086 0.037590 TGGCTAGGTTTGCAACGGAT 59.962 50.000 0.00 0.00 0.00 4.18
2518 3087 1.173913 GGCTAGGTTTGCAACGGATT 58.826 50.000 0.00 0.00 0.00 3.01
2519 3088 2.290387 TGGCTAGGTTTGCAACGGATTA 60.290 45.455 0.00 0.00 0.00 1.75
2520 3089 2.750712 GGCTAGGTTTGCAACGGATTAA 59.249 45.455 0.00 0.00 0.00 1.40
2521 3090 3.427098 GGCTAGGTTTGCAACGGATTAAC 60.427 47.826 0.00 0.00 0.00 2.01
2522 3091 2.981400 AGGTTTGCAACGGATTAACG 57.019 45.000 0.00 0.00 40.31 3.18
2523 3092 2.496111 AGGTTTGCAACGGATTAACGA 58.504 42.857 0.00 0.00 37.61 3.85
2524 3093 2.482721 AGGTTTGCAACGGATTAACGAG 59.517 45.455 0.00 0.00 37.61 4.18
2525 3094 2.224784 GGTTTGCAACGGATTAACGAGT 59.775 45.455 0.00 0.00 37.61 4.18
2526 3095 3.304190 GGTTTGCAACGGATTAACGAGTT 60.304 43.478 0.00 0.00 37.61 3.01
2527 3096 3.529634 TTGCAACGGATTAACGAGTTG 57.470 42.857 0.00 11.95 44.66 3.16
2528 3097 1.801771 TGCAACGGATTAACGAGTTGG 59.198 47.619 15.80 3.89 42.80 3.77
2529 3098 1.802365 GCAACGGATTAACGAGTTGGT 59.198 47.619 15.80 0.00 42.80 3.67
2530 3099 2.412325 GCAACGGATTAACGAGTTGGTG 60.412 50.000 15.80 0.00 42.80 4.17
2531 3100 2.088950 ACGGATTAACGAGTTGGTGG 57.911 50.000 0.00 0.00 37.61 4.61
2532 3101 1.345415 ACGGATTAACGAGTTGGTGGT 59.655 47.619 0.00 0.00 37.61 4.16
2533 3102 2.224354 ACGGATTAACGAGTTGGTGGTT 60.224 45.455 0.00 0.00 37.61 3.67
2534 3103 2.809696 CGGATTAACGAGTTGGTGGTTT 59.190 45.455 0.00 0.00 35.47 3.27
2535 3104 3.251487 CGGATTAACGAGTTGGTGGTTTT 59.749 43.478 0.00 0.00 35.47 2.43
2536 3105 4.612033 CGGATTAACGAGTTGGTGGTTTTC 60.612 45.833 0.00 0.00 35.47 2.29
2537 3106 4.517832 GGATTAACGAGTTGGTGGTTTTCT 59.482 41.667 0.00 0.00 0.00 2.52
2538 3107 4.886247 TTAACGAGTTGGTGGTTTTCTG 57.114 40.909 0.00 0.00 0.00 3.02
2539 3108 1.021968 ACGAGTTGGTGGTTTTCTGC 58.978 50.000 0.00 0.00 0.00 4.26
2540 3109 1.021202 CGAGTTGGTGGTTTTCTGCA 58.979 50.000 0.00 0.00 0.00 4.41
2541 3110 1.403679 CGAGTTGGTGGTTTTCTGCAA 59.596 47.619 0.00 0.00 0.00 4.08
2542 3111 2.159310 CGAGTTGGTGGTTTTCTGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
2543 3112 3.186909 GAGTTGGTGGTTTTCTGCAAAC 58.813 45.455 0.00 0.00 43.78 2.93
2551 3120 3.013276 GTTTTCTGCAAACCTAGCCAC 57.987 47.619 0.00 0.00 39.22 5.01
2552 3121 2.356665 TTTCTGCAAACCTAGCCACA 57.643 45.000 0.00 0.00 0.00 4.17
2553 3122 2.356665 TTCTGCAAACCTAGCCACAA 57.643 45.000 0.00 0.00 0.00 3.33
2554 3123 2.356665 TCTGCAAACCTAGCCACAAA 57.643 45.000 0.00 0.00 0.00 2.83
2555 3124 2.875296 TCTGCAAACCTAGCCACAAAT 58.125 42.857 0.00 0.00 0.00 2.32
2556 3125 2.557924 TCTGCAAACCTAGCCACAAATG 59.442 45.455 0.00 0.00 0.00 2.32
2557 3126 2.297033 CTGCAAACCTAGCCACAAATGT 59.703 45.455 0.00 0.00 0.00 2.71
2558 3127 2.035704 TGCAAACCTAGCCACAAATGTG 59.964 45.455 6.57 6.57 45.23 3.21
2570 3139 2.865551 CACAAATGTGGTGGTTTCTTGC 59.134 45.455 5.63 0.00 42.10 4.01
2571 3140 2.499289 ACAAATGTGGTGGTTTCTTGCA 59.501 40.909 0.00 0.00 0.00 4.08
2572 3141 3.055530 ACAAATGTGGTGGTTTCTTGCAA 60.056 39.130 0.00 0.00 0.00 4.08
2573 3142 4.128643 CAAATGTGGTGGTTTCTTGCAAT 58.871 39.130 0.00 0.00 0.00 3.56
2574 3143 4.420522 AATGTGGTGGTTTCTTGCAATT 57.579 36.364 0.00 0.00 0.00 2.32
2575 3144 3.176552 TGTGGTGGTTTCTTGCAATTG 57.823 42.857 0.00 0.00 0.00 2.32
2576 3145 2.762887 TGTGGTGGTTTCTTGCAATTGA 59.237 40.909 10.34 0.00 0.00 2.57
2577 3146 3.123050 GTGGTGGTTTCTTGCAATTGAC 58.877 45.455 10.34 1.02 0.00 3.18
2578 3147 3.030291 TGGTGGTTTCTTGCAATTGACT 58.970 40.909 10.34 0.00 0.00 3.41
2579 3148 3.068024 TGGTGGTTTCTTGCAATTGACTC 59.932 43.478 10.34 0.00 0.00 3.36
2580 3149 3.068024 GGTGGTTTCTTGCAATTGACTCA 59.932 43.478 10.34 0.00 0.00 3.41
2581 3150 4.441356 GGTGGTTTCTTGCAATTGACTCAA 60.441 41.667 10.34 3.22 0.00 3.02
2582 3151 5.291971 GTGGTTTCTTGCAATTGACTCAAT 58.708 37.500 10.34 0.00 35.39 2.57
2583 3152 5.403466 GTGGTTTCTTGCAATTGACTCAATC 59.597 40.000 10.34 0.00 32.43 2.67
2584 3153 4.925646 GGTTTCTTGCAATTGACTCAATCC 59.074 41.667 10.34 1.44 32.43 3.01
2585 3154 5.279156 GGTTTCTTGCAATTGACTCAATCCT 60.279 40.000 10.34 0.00 32.43 3.24
2586 3155 6.071952 GGTTTCTTGCAATTGACTCAATCCTA 60.072 38.462 10.34 0.00 32.43 2.94
2587 3156 6.748333 TTCTTGCAATTGACTCAATCCTAG 57.252 37.500 10.34 6.24 32.43 3.02
2588 3157 5.188434 TCTTGCAATTGACTCAATCCTAGG 58.812 41.667 10.34 0.82 32.43 3.02
2589 3158 3.282021 TGCAATTGACTCAATCCTAGGC 58.718 45.455 10.34 5.41 32.43 3.93
2722 3291 8.964476 ATGTATTAGGTTATGAAACACCAGAG 57.036 34.615 0.00 0.00 37.34 3.35
2872 3441 8.645110 TGGGCCATTACTACTATTACTCTTAAC 58.355 37.037 0.00 0.00 0.00 2.01
3028 3598 5.888691 TTGCGATTTTATGCAGGAAGTTA 57.111 34.783 0.00 0.00 42.89 2.24
3031 3601 5.215160 GCGATTTTATGCAGGAAGTTATGG 58.785 41.667 0.00 0.00 0.00 2.74
3074 3644 4.303086 CAGGATTGCATTGATCAACCTC 57.697 45.455 11.07 3.48 0.00 3.85
3083 3653 4.391830 GCATTGATCAACCTCGTCAAACTA 59.608 41.667 11.07 0.00 35.70 2.24
3087 3657 4.862574 TGATCAACCTCGTCAAACTATTCG 59.137 41.667 0.00 0.00 0.00 3.34
3088 3658 2.991190 TCAACCTCGTCAAACTATTCGC 59.009 45.455 0.00 0.00 0.00 4.70
3090 3660 4.082625 TCAACCTCGTCAAACTATTCGCTA 60.083 41.667 0.00 0.00 0.00 4.26
3218 3788 3.775202 AGACAAGACATCAGTATGCGTC 58.225 45.455 0.00 0.00 38.16 5.19
3297 3867 3.595190 AATATAAAGCCCACAGGACCC 57.405 47.619 0.00 0.00 33.47 4.46
3353 3923 6.824305 AAGCACAAATAAGACTAACAGCAT 57.176 33.333 0.00 0.00 0.00 3.79
3355 3925 5.355350 AGCACAAATAAGACTAACAGCATCC 59.645 40.000 0.00 0.00 0.00 3.51
3361 3931 4.623932 AAGACTAACAGCATCCACTTCA 57.376 40.909 0.00 0.00 0.00 3.02
3365 3935 4.012374 ACTAACAGCATCCACTTCATTGG 58.988 43.478 0.00 0.00 38.10 3.16
3371 3941 3.118112 AGCATCCACTTCATTGGTAGGAG 60.118 47.826 0.00 0.00 37.93 3.69
3481 4052 9.431887 TCTTACAAGGTGCACTAATTACTTTAG 57.568 33.333 17.98 7.42 42.62 1.85
3509 4080 5.914898 ATTTGCTATTTTCCCTACACACC 57.085 39.130 0.00 0.00 0.00 4.16
3517 4088 2.848678 TCCCTACACACCAGATAGCT 57.151 50.000 0.00 0.00 0.00 3.32
3556 4127 7.775053 TGTTTTTATGGCCATCTTTTCTACT 57.225 32.000 24.80 0.00 0.00 2.57
3583 4154 3.343617 TGGAACAGGCTTATTTCTTCCG 58.656 45.455 0.00 0.00 31.47 4.30
3603 4174 1.070289 GGGACAGAACAGTTCCGAACT 59.930 52.381 9.85 8.03 44.06 3.01
3629 4200 7.642082 TCTACATGAAGTTAACTAGTCTCCC 57.358 40.000 8.92 0.00 0.00 4.30
3630 4201 5.326200 ACATGAAGTTAACTAGTCTCCCG 57.674 43.478 8.92 0.00 0.00 5.14
3631 4202 3.863142 TGAAGTTAACTAGTCTCCCGC 57.137 47.619 8.92 0.00 0.00 6.13
3632 4203 3.159472 TGAAGTTAACTAGTCTCCCGCA 58.841 45.455 8.92 0.00 0.00 5.69
3633 4204 3.575256 TGAAGTTAACTAGTCTCCCGCAA 59.425 43.478 8.92 0.00 0.00 4.85
3634 4205 4.039488 TGAAGTTAACTAGTCTCCCGCAAA 59.961 41.667 8.92 0.00 0.00 3.68
3635 4206 4.612264 AGTTAACTAGTCTCCCGCAAAA 57.388 40.909 6.26 0.00 0.00 2.44
3636 4207 4.964593 AGTTAACTAGTCTCCCGCAAAAA 58.035 39.130 6.26 0.00 0.00 1.94
3715 4286 6.050432 TGTTACACACTAAACGGAATCTGTT 58.950 36.000 0.85 0.85 0.00 3.16
3753 4324 3.949313 GCGTTTCAAGCCTAGTTCG 57.051 52.632 0.00 0.00 0.00 3.95
3771 4342 0.094046 CGACGTACCATTTGGCGAAC 59.906 55.000 0.00 0.00 39.32 3.95
3776 4347 4.695396 ACGTACCATTTGGCGAACATATA 58.305 39.130 0.00 0.00 39.32 0.86
3781 4352 5.376625 ACCATTTGGCGAACATATATGTCT 58.623 37.500 18.52 9.15 38.34 3.41
3825 4396 6.476706 GCAAGCAGTAACTTTCTTTCACATTT 59.523 34.615 0.00 0.00 0.00 2.32
3881 4460 2.176798 TCCTGTGTTCATTGAACCCCTT 59.823 45.455 23.22 0.00 41.35 3.95
4052 4631 5.450688 CCAAGGAGTCGAGACTTTAGGTATG 60.451 48.000 7.23 1.49 42.66 2.39
4288 4867 1.558756 CTCTCAACCTGCCTGATCCTT 59.441 52.381 0.00 0.00 0.00 3.36
4396 4976 5.011329 ACAATTTGACTGCATTTCTCACCAT 59.989 36.000 2.79 0.00 0.00 3.55
4434 5014 8.450578 TGAAATTATGATAGATGTGAACCACC 57.549 34.615 0.00 0.00 32.73 4.61
4455 5035 4.184629 CCTGTTAGGTGCTACATTCAGTC 58.815 47.826 0.00 0.00 0.00 3.51
4488 5068 9.922305 GTATTGTTAGATTGCTTGTTACTGATC 57.078 33.333 0.00 0.00 0.00 2.92
4498 5078 5.063438 TGCTTGTTACTGATCGTATTTCTGC 59.937 40.000 0.00 0.00 0.00 4.26
4527 5107 6.540189 TCCTATTTTATTTGCAGACTGAGAGC 59.460 38.462 6.65 0.00 0.00 4.09
4530 5110 2.687700 ATTTGCAGACTGAGAGCGAT 57.312 45.000 6.65 0.00 0.00 4.58
4545 5125 2.789893 GAGCGATTTAGTAGAAGCCGTG 59.210 50.000 0.00 0.00 0.00 4.94
4548 5128 3.799232 GCGATTTAGTAGAAGCCGTGGAT 60.799 47.826 0.00 0.00 0.00 3.41
4549 5129 4.558095 GCGATTTAGTAGAAGCCGTGGATA 60.558 45.833 0.00 0.00 0.00 2.59
4575 5155 9.082313 AGTGACCTCAGAAAAATGTTGATAAAT 57.918 29.630 0.00 0.00 0.00 1.40
4871 5451 5.130145 GCATATATGAGGTGAGGCTAGGATT 59.870 44.000 17.10 0.00 0.00 3.01
5016 5596 5.287992 GCTATTCTGCAAAAGCAGTGATTTC 59.712 40.000 16.10 0.00 38.77 2.17
5057 5689 6.062749 TGTATGCTAAGTAGTACTCCCTCTG 58.937 44.000 2.58 0.00 0.00 3.35
5058 5690 4.857130 TGCTAAGTAGTACTCCCTCTGA 57.143 45.455 2.58 0.00 0.00 3.27
5059 5691 5.188988 TGCTAAGTAGTACTCCCTCTGAA 57.811 43.478 2.58 0.00 0.00 3.02
5060 5692 5.577100 TGCTAAGTAGTACTCCCTCTGAAA 58.423 41.667 2.58 0.00 0.00 2.69
5061 5693 6.014647 TGCTAAGTAGTACTCCCTCTGAAAA 58.985 40.000 2.58 0.00 0.00 2.29
5062 5694 6.153000 TGCTAAGTAGTACTCCCTCTGAAAAG 59.847 42.308 2.58 0.00 0.00 2.27
5063 5695 6.377712 GCTAAGTAGTACTCCCTCTGAAAAGA 59.622 42.308 2.58 0.00 0.00 2.52
5064 5696 7.093858 GCTAAGTAGTACTCCCTCTGAAAAGAA 60.094 40.741 2.58 0.00 0.00 2.52
5065 5697 7.613551 AAGTAGTACTCCCTCTGAAAAGAAA 57.386 36.000 2.58 0.00 0.00 2.52
5066 5698 7.800300 AGTAGTACTCCCTCTGAAAAGAAAT 57.200 36.000 0.00 0.00 0.00 2.17
5067 5699 8.896722 AGTAGTACTCCCTCTGAAAAGAAATA 57.103 34.615 0.00 0.00 0.00 1.40
5068 5700 9.495382 AGTAGTACTCCCTCTGAAAAGAAATAT 57.505 33.333 0.00 0.00 0.00 1.28
5074 5706 7.990314 ACTCCCTCTGAAAAGAAATATAAGAGC 59.010 37.037 0.00 0.00 0.00 4.09
5075 5707 6.986817 TCCCTCTGAAAAGAAATATAAGAGCG 59.013 38.462 0.00 0.00 0.00 5.03
5076 5708 6.763610 CCCTCTGAAAAGAAATATAAGAGCGT 59.236 38.462 0.00 0.00 0.00 5.07
5077 5709 7.281100 CCCTCTGAAAAGAAATATAAGAGCGTT 59.719 37.037 0.00 0.00 0.00 4.84
5078 5710 8.669243 CCTCTGAAAAGAAATATAAGAGCGTTT 58.331 33.333 0.00 0.00 0.00 3.60
5094 5726 8.690680 AAGAGCGTTTAGATCACTAAAAGTAG 57.309 34.615 13.61 5.26 45.97 2.57
5095 5727 7.828712 AGAGCGTTTAGATCACTAAAAGTAGT 58.171 34.615 13.61 0.00 45.97 2.73
5109 5741 7.828712 ACTAAAAGTAGTGATCTAAACGCTCT 58.171 34.615 0.00 0.00 39.20 4.09
5135 5767 9.886132 TTATATTTGTTTTCAGAGGGAGTAGAC 57.114 33.333 0.00 0.00 0.00 2.59
5211 5844 8.618952 CGATTTCTTTGATTAAACTTCGACAAC 58.381 33.333 0.00 0.00 0.00 3.32
5222 5855 3.947626 ACTTCGACAACAAATTTCACCG 58.052 40.909 0.00 0.00 0.00 4.94
5230 5863 5.901552 ACAACAAATTTCACCGACAAGATT 58.098 33.333 0.00 0.00 0.00 2.40
5341 5978 7.372714 TGATCAAATTCATGGTCAAAGTTGAG 58.627 34.615 11.67 0.00 41.14 3.02
5352 5989 4.142881 GGTCAAAGTTGAGCCTCGAAATAC 60.143 45.833 11.33 0.00 46.84 1.89
5353 5990 3.678072 TCAAAGTTGAGCCTCGAAATACG 59.322 43.478 0.00 0.00 36.67 3.06
5358 5995 2.078958 GAGCCTCGAAATACGCGTGC 62.079 60.000 24.59 14.21 42.26 5.34
5367 6004 1.084935 AATACGCGTGCGCCATGTAA 61.085 50.000 24.59 0.00 44.19 2.41
5437 6078 5.126067 ACCACTGTTGATGGAAGCATATAC 58.874 41.667 0.00 0.00 39.87 1.47
5440 6081 5.589855 CACTGTTGATGGAAGCATATACCAA 59.410 40.000 0.00 0.00 37.24 3.67
5441 6082 5.824624 ACTGTTGATGGAAGCATATACCAAG 59.175 40.000 0.00 0.00 37.24 3.61
5443 6084 5.133221 GTTGATGGAAGCATATACCAAGGT 58.867 41.667 0.00 0.00 37.24 3.50
5451 6152 6.602009 GGAAGCATATACCAAGGTTACAACTT 59.398 38.462 0.00 0.00 0.00 2.66
5473 6174 8.128322 ACTTGACTATTACTGTCTCATTCTGT 57.872 34.615 0.00 0.00 35.63 3.41
5479 6180 9.209175 ACTATTACTGTCTCATTCTGTTGAAAC 57.791 33.333 0.00 0.00 35.63 2.78
5480 6181 9.429359 CTATTACTGTCTCATTCTGTTGAAACT 57.571 33.333 0.00 0.00 35.63 2.66
5534 6235 5.432645 TGTTTGTCAAGTTAGTCATGGTGA 58.567 37.500 0.00 0.00 0.00 4.02
5535 6236 7.468631 ATTGTTTGTCAAGTTAGTCATGGTGAC 60.469 37.037 1.94 1.94 42.25 3.67
5548 6249 4.699522 GTGACCACCCCGAGCCAC 62.700 72.222 0.00 0.00 0.00 5.01
5550 6251 4.394712 GACCACCCCGAGCCACAG 62.395 72.222 0.00 0.00 0.00 3.66
5565 6266 4.473520 CAGGGGCGCGGAGTCATT 62.474 66.667 8.83 0.00 0.00 2.57
5566 6267 4.473520 AGGGGCGCGGAGTCATTG 62.474 66.667 8.83 0.00 0.00 2.82
5568 6269 4.467084 GGGCGCGGAGTCATTGGA 62.467 66.667 8.83 0.00 0.00 3.53
5569 6270 2.892425 GGCGCGGAGTCATTGGAG 60.892 66.667 8.83 0.00 0.00 3.86
5571 6272 1.741770 GCGCGGAGTCATTGGAGTT 60.742 57.895 8.83 0.00 0.00 3.01
5572 6273 1.970917 GCGCGGAGTCATTGGAGTTG 61.971 60.000 8.83 0.00 0.00 3.16
5573 6274 0.670546 CGCGGAGTCATTGGAGTTGT 60.671 55.000 0.00 0.00 0.00 3.32
5575 6276 1.608025 GCGGAGTCATTGGAGTTGTCA 60.608 52.381 0.00 0.00 0.00 3.58
5576 6277 2.069273 CGGAGTCATTGGAGTTGTCAC 58.931 52.381 0.00 0.00 0.00 3.67
5577 6278 2.547855 CGGAGTCATTGGAGTTGTCACA 60.548 50.000 0.00 0.00 0.00 3.58
5578 6279 2.808543 GGAGTCATTGGAGTTGTCACAC 59.191 50.000 0.00 0.00 0.00 3.82
5579 6280 2.808543 GAGTCATTGGAGTTGTCACACC 59.191 50.000 0.00 0.00 34.32 4.16
5580 6281 1.880027 GTCATTGGAGTTGTCACACCC 59.120 52.381 0.00 0.00 32.78 4.61
5581 6282 1.202879 TCATTGGAGTTGTCACACCCC 60.203 52.381 0.00 0.00 32.78 4.95
5583 6284 0.182537 TTGGAGTTGTCACACCCCTG 59.817 55.000 0.00 0.00 32.78 4.45
5584 6285 0.692756 TGGAGTTGTCACACCCCTGA 60.693 55.000 0.00 0.00 32.78 3.86
5585 6286 0.035458 GGAGTTGTCACACCCCTGAG 59.965 60.000 0.00 0.00 0.00 3.35
5586 6287 1.048601 GAGTTGTCACACCCCTGAGA 58.951 55.000 0.00 0.00 0.00 3.27
5587 6288 1.001406 GAGTTGTCACACCCCTGAGAG 59.999 57.143 0.00 0.00 0.00 3.20
5598 6324 4.006319 CACCCCTGAGAGTGAAGATTTTC 58.994 47.826 0.00 0.00 36.01 2.29
5605 6331 7.201830 CCCTGAGAGTGAAGATTTTCGATAGTA 60.202 40.741 0.00 0.00 36.04 1.82
5625 6351 2.582052 AGCCCGAAGAATTTGACAACA 58.418 42.857 0.00 0.00 0.00 3.33
5664 6390 5.476599 CCAAATTGACCAATACCTCTTCACA 59.523 40.000 0.00 0.00 0.00 3.58
5665 6391 6.153340 CCAAATTGACCAATACCTCTTCACAT 59.847 38.462 0.00 0.00 0.00 3.21
5696 6422 0.257328 TGTGGCCCAAGTTCAAGTGA 59.743 50.000 0.00 0.00 0.00 3.41
5700 6426 2.290896 TGGCCCAAGTTCAAGTGATAGG 60.291 50.000 0.00 0.00 0.00 2.57
5720 6446 2.560861 GCCATCACTTTTCGCGCA 59.439 55.556 8.75 0.00 0.00 6.09
5733 6459 2.276123 CGCGCACAACGTTGTCAAC 61.276 57.895 30.24 20.48 46.11 3.18
5735 6461 0.923911 GCGCACAACGTTGTCAACTC 60.924 55.000 30.24 14.22 46.11 3.01
5749 6530 6.403746 CGTTGTCAACTCTATCTCTGAAGCTA 60.404 42.308 13.67 0.00 0.00 3.32
5755 6536 6.952773 ACTCTATCTCTGAAGCTATCGTTT 57.047 37.500 0.00 0.00 0.00 3.60
5756 6537 7.341445 ACTCTATCTCTGAAGCTATCGTTTT 57.659 36.000 0.00 0.00 0.00 2.43
5757 6538 7.777095 ACTCTATCTCTGAAGCTATCGTTTTT 58.223 34.615 0.00 0.00 0.00 1.94
5758 6539 8.904834 ACTCTATCTCTGAAGCTATCGTTTTTA 58.095 33.333 0.00 0.00 0.00 1.52
5759 6540 9.176181 CTCTATCTCTGAAGCTATCGTTTTTAC 57.824 37.037 0.00 0.00 0.00 2.01
5760 6541 8.136165 TCTATCTCTGAAGCTATCGTTTTTACC 58.864 37.037 0.00 0.00 0.00 2.85
5761 6542 6.032956 TCTCTGAAGCTATCGTTTTTACCA 57.967 37.500 0.00 0.00 0.00 3.25
5763 6544 5.790593 TCTGAAGCTATCGTTTTTACCACT 58.209 37.500 0.00 0.00 0.00 4.00
5764 6545 6.228258 TCTGAAGCTATCGTTTTTACCACTT 58.772 36.000 0.00 0.00 0.00 3.16
5765 6546 6.147164 TCTGAAGCTATCGTTTTTACCACTTG 59.853 38.462 0.00 0.00 0.00 3.16
5766 6547 4.680171 AGCTATCGTTTTTACCACTTGC 57.320 40.909 0.00 0.00 0.00 4.01
5767 6548 4.324267 AGCTATCGTTTTTACCACTTGCT 58.676 39.130 0.00 0.00 0.00 3.91
5768 6549 4.760204 AGCTATCGTTTTTACCACTTGCTT 59.240 37.500 0.00 0.00 0.00 3.91
5769 6550 5.240844 AGCTATCGTTTTTACCACTTGCTTT 59.759 36.000 0.00 0.00 0.00 3.51
5770 6551 5.567915 GCTATCGTTTTTACCACTTGCTTTC 59.432 40.000 0.00 0.00 0.00 2.62
5771 6552 5.767816 ATCGTTTTTACCACTTGCTTTCT 57.232 34.783 0.00 0.00 0.00 2.52
5772 6553 5.570234 TCGTTTTTACCACTTGCTTTCTT 57.430 34.783 0.00 0.00 0.00 2.52
5773 6554 5.575019 TCGTTTTTACCACTTGCTTTCTTC 58.425 37.500 0.00 0.00 0.00 2.87
5774 6555 4.738252 CGTTTTTACCACTTGCTTTCTTCC 59.262 41.667 0.00 0.00 0.00 3.46
5775 6556 5.656480 GTTTTTACCACTTGCTTTCTTCCA 58.344 37.500 0.00 0.00 0.00 3.53
5776 6557 6.280643 GTTTTTACCACTTGCTTTCTTCCAT 58.719 36.000 0.00 0.00 0.00 3.41
5777 6558 6.478512 TTTTACCACTTGCTTTCTTCCATT 57.521 33.333 0.00 0.00 0.00 3.16
5778 6559 6.478512 TTTACCACTTGCTTTCTTCCATTT 57.521 33.333 0.00 0.00 0.00 2.32
5779 6560 7.589958 TTTACCACTTGCTTTCTTCCATTTA 57.410 32.000 0.00 0.00 0.00 1.40
5780 6561 7.775053 TTACCACTTGCTTTCTTCCATTTAT 57.225 32.000 0.00 0.00 0.00 1.40
5785 6566 7.095523 CCACTTGCTTTCTTCCATTTATGTTTG 60.096 37.037 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 171 2.232208 GACATGCCTCTTTTGGAAAGGG 59.768 50.000 0.00 0.00 0.00 3.95
165 174 3.318839 CACAGACATGCCTCTTTTGGAAA 59.681 43.478 0.00 0.00 0.00 3.13
190 201 1.508632 ACGGTTGTGATTTCGTGAGG 58.491 50.000 0.00 0.00 34.40 3.86
272 299 1.301401 CCGTGCCTCCTCGAAAACA 60.301 57.895 0.00 0.00 0.00 2.83
622 818 3.970828 ATTTTATGCGAAAAAGCGTGC 57.029 38.095 0.97 0.00 40.67 5.34
667 878 2.163613 CCACCGGTTTTCCTTAGCATTC 59.836 50.000 2.97 0.00 37.95 2.67
670 881 0.766131 TCCACCGGTTTTCCTTAGCA 59.234 50.000 2.97 0.00 37.95 3.49
772 1002 3.943034 CGTGTCGCGTTTTGGGCA 61.943 61.111 5.77 0.00 35.54 5.36
793 1023 2.173669 GCGCGCTCTTAGCCATTGA 61.174 57.895 26.67 0.00 38.18 2.57
794 1024 2.325857 GCGCGCTCTTAGCCATTG 59.674 61.111 26.67 0.00 38.18 2.82
841 1071 2.735134 CAACTAGTTAACGCGCTCCTTT 59.265 45.455 8.04 0.00 0.00 3.11
868 1100 4.060038 TGGATAGAATGGCTCGTTTCTC 57.940 45.455 0.00 0.00 34.22 2.87
874 1106 4.219507 ACTGTAGATGGATAGAATGGCTCG 59.780 45.833 0.00 0.00 0.00 5.03
877 1109 4.564406 CCCACTGTAGATGGATAGAATGGC 60.564 50.000 0.00 0.00 39.87 4.40
925 1471 1.145162 CGGCTGTGTTGGTTTGTTGC 61.145 55.000 0.00 0.00 0.00 4.17
1225 1774 2.887568 CGTGATGAGCAGGTCGCC 60.888 66.667 0.00 0.00 44.04 5.54
1347 1896 2.890474 CGTACGGCCATGGTGAGC 60.890 66.667 14.67 0.00 0.00 4.26
1377 1926 2.112522 CGAACAATCACGATCGGAGAG 58.887 52.381 20.98 11.96 43.63 3.20
1410 1959 2.352651 TGAAGCGCTTACATCATTCTGC 59.647 45.455 25.11 6.37 0.00 4.26
1429 1978 0.695924 ACCAACCAATCCGTCCATGA 59.304 50.000 0.00 0.00 0.00 3.07
1436 1985 1.876497 CTGCCCAACCAACCAATCCG 61.876 60.000 0.00 0.00 0.00 4.18
1447 1996 2.985847 GCTGTCCACCTGCCCAAC 60.986 66.667 0.00 0.00 32.24 3.77
1448 1997 4.641645 CGCTGTCCACCTGCCCAA 62.642 66.667 0.00 0.00 34.75 4.12
1833 2382 1.949525 ACGCAACAAGAAGACATTGCT 59.050 42.857 6.28 0.00 44.18 3.91
2253 2822 5.231147 CGAAACACCAAACAACTTGTATTGG 59.769 40.000 21.85 21.85 40.75 3.16
2340 2909 3.068024 TGGTGGTTTCTTGCAATTGACTC 59.932 43.478 10.34 0.00 0.00 3.36
2341 2910 3.030291 TGGTGGTTTCTTGCAATTGACT 58.970 40.909 10.34 0.00 0.00 3.41
2342 2911 3.123050 GTGGTGGTTTCTTGCAATTGAC 58.877 45.455 10.34 1.02 0.00 3.18
2343 2912 2.762887 TGTGGTGGTTTCTTGCAATTGA 59.237 40.909 10.34 0.00 0.00 2.57
2344 2913 3.176552 TGTGGTGGTTTCTTGCAATTG 57.823 42.857 0.00 0.00 0.00 2.32
2345 2914 4.420522 AATGTGGTGGTTTCTTGCAATT 57.579 36.364 0.00 0.00 0.00 2.32
2346 2915 4.128643 CAAATGTGGTGGTTTCTTGCAAT 58.871 39.130 0.00 0.00 0.00 3.56
2347 2916 3.055530 ACAAATGTGGTGGTTTCTTGCAA 60.056 39.130 0.00 0.00 0.00 4.08
2348 2917 2.499289 ACAAATGTGGTGGTTTCTTGCA 59.501 40.909 0.00 0.00 0.00 4.08
2349 2918 2.865551 CACAAATGTGGTGGTTTCTTGC 59.134 45.455 5.63 0.00 42.10 4.01
2361 2930 2.035704 TGCAAACCTAGCCACAAATGTG 59.964 45.455 6.57 6.57 45.23 3.21
2362 2931 2.297033 CTGCAAACCTAGCCACAAATGT 59.703 45.455 0.00 0.00 0.00 2.71
2363 2932 2.557924 TCTGCAAACCTAGCCACAAATG 59.442 45.455 0.00 0.00 0.00 2.32
2364 2933 2.875296 TCTGCAAACCTAGCCACAAAT 58.125 42.857 0.00 0.00 0.00 2.32
2365 2934 2.356665 TCTGCAAACCTAGCCACAAA 57.643 45.000 0.00 0.00 0.00 2.83
2366 2935 2.356665 TTCTGCAAACCTAGCCACAA 57.643 45.000 0.00 0.00 0.00 3.33
2367 2936 2.356665 TTTCTGCAAACCTAGCCACA 57.643 45.000 0.00 0.00 0.00 4.17
2368 2937 3.013276 GTTTTCTGCAAACCTAGCCAC 57.987 47.619 0.00 0.00 39.22 5.01
2376 2945 3.186909 GAGTTGGTGGTTTTCTGCAAAC 58.813 45.455 0.00 0.00 43.78 2.93
2377 2946 2.159310 CGAGTTGGTGGTTTTCTGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
2378 2947 1.403679 CGAGTTGGTGGTTTTCTGCAA 59.596 47.619 0.00 0.00 0.00 4.08
2379 2948 1.021202 CGAGTTGGTGGTTTTCTGCA 58.979 50.000 0.00 0.00 0.00 4.41
2380 2949 1.021968 ACGAGTTGGTGGTTTTCTGC 58.978 50.000 0.00 0.00 0.00 4.26
2381 2950 4.886247 TTAACGAGTTGGTGGTTTTCTG 57.114 40.909 0.00 0.00 0.00 3.02
2382 2951 4.517832 GGATTAACGAGTTGGTGGTTTTCT 59.482 41.667 0.00 0.00 0.00 2.52
2383 2952 4.612033 CGGATTAACGAGTTGGTGGTTTTC 60.612 45.833 0.00 0.00 35.47 2.29
2384 2953 3.251487 CGGATTAACGAGTTGGTGGTTTT 59.749 43.478 0.00 0.00 35.47 2.43
2385 2954 2.809696 CGGATTAACGAGTTGGTGGTTT 59.190 45.455 0.00 0.00 35.47 3.27
2386 2955 2.224354 ACGGATTAACGAGTTGGTGGTT 60.224 45.455 0.00 0.00 37.61 3.67
2387 2956 1.345415 ACGGATTAACGAGTTGGTGGT 59.655 47.619 0.00 0.00 37.61 4.16
2388 2957 2.088950 ACGGATTAACGAGTTGGTGG 57.911 50.000 0.00 0.00 37.61 4.61
2389 2958 2.412325 GCAACGGATTAACGAGTTGGTG 60.412 50.000 15.80 0.00 42.80 4.17
2390 2959 1.802365 GCAACGGATTAACGAGTTGGT 59.198 47.619 15.80 0.00 42.80 3.67
2391 2960 1.801771 TGCAACGGATTAACGAGTTGG 59.198 47.619 15.80 3.89 42.80 3.77
2392 2961 3.529634 TTGCAACGGATTAACGAGTTG 57.470 42.857 0.00 11.95 44.66 3.16
2393 2962 4.555348 TTTTGCAACGGATTAACGAGTT 57.445 36.364 0.00 0.00 37.61 3.01
2394 2963 4.555348 TTTTTGCAACGGATTAACGAGT 57.445 36.364 0.00 0.00 37.61 4.18
2412 2981 1.396607 GCAACGGAGGGGGTGTTTTT 61.397 55.000 0.00 0.00 0.00 1.94
2413 2982 1.830847 GCAACGGAGGGGGTGTTTT 60.831 57.895 0.00 0.00 0.00 2.43
2414 2983 2.203437 GCAACGGAGGGGGTGTTT 60.203 61.111 0.00 0.00 0.00 2.83
2415 2984 2.575455 TTTGCAACGGAGGGGGTGTT 62.575 55.000 0.00 0.00 0.00 3.32
2416 2985 2.575455 TTTTGCAACGGAGGGGGTGT 62.575 55.000 0.00 0.00 0.00 4.16
2417 2986 1.395826 TTTTTGCAACGGAGGGGGTG 61.396 55.000 0.00 0.00 0.00 4.61
2418 2987 1.075896 TTTTTGCAACGGAGGGGGT 60.076 52.632 0.00 0.00 0.00 4.95
2419 2988 3.863606 TTTTTGCAACGGAGGGGG 58.136 55.556 0.00 0.00 0.00 5.40
2441 3010 2.989253 GGTTTGCAACGGAGGGGG 60.989 66.667 0.00 0.00 0.00 5.40
2442 3011 2.203422 TGGTTTGCAACGGAGGGG 60.203 61.111 0.00 0.00 0.00 4.79
2443 3012 2.561037 GGTGGTTTGCAACGGAGGG 61.561 63.158 0.00 0.00 0.00 4.30
2444 3013 1.388065 TTGGTGGTTTGCAACGGAGG 61.388 55.000 0.00 0.00 0.00 4.30
2445 3014 0.248866 GTTGGTGGTTTGCAACGGAG 60.249 55.000 0.00 0.00 0.00 4.63
2446 3015 0.681564 AGTTGGTGGTTTGCAACGGA 60.682 50.000 0.00 0.00 33.26 4.69
2447 3016 0.248866 GAGTTGGTGGTTTGCAACGG 60.249 55.000 0.00 0.00 33.26 4.44
2448 3017 0.591236 CGAGTTGGTGGTTTGCAACG 60.591 55.000 0.00 0.00 33.26 4.10
2449 3018 0.454196 ACGAGTTGGTGGTTTGCAAC 59.546 50.000 0.00 0.00 0.00 4.17
2450 3019 1.178276 AACGAGTTGGTGGTTTGCAA 58.822 45.000 0.00 0.00 0.00 4.08
2451 3020 2.039818 TAACGAGTTGGTGGTTTGCA 57.960 45.000 0.00 0.00 0.00 4.08
2452 3021 3.561503 GATTAACGAGTTGGTGGTTTGC 58.438 45.455 0.00 0.00 0.00 3.68
2453 3022 3.364565 CGGATTAACGAGTTGGTGGTTTG 60.365 47.826 0.00 0.00 35.47 2.93
2454 3023 2.809696 CGGATTAACGAGTTGGTGGTTT 59.190 45.455 0.00 0.00 35.47 3.27
2455 3024 2.224354 ACGGATTAACGAGTTGGTGGTT 60.224 45.455 0.00 0.00 37.61 3.67
2456 3025 1.345415 ACGGATTAACGAGTTGGTGGT 59.655 47.619 0.00 0.00 37.61 4.16
2457 3026 2.088950 ACGGATTAACGAGTTGGTGG 57.911 50.000 0.00 0.00 37.61 4.61
2458 3027 2.412325 GCAACGGATTAACGAGTTGGTG 60.412 50.000 15.80 0.00 42.80 4.17
2459 3028 1.802365 GCAACGGATTAACGAGTTGGT 59.198 47.619 15.80 0.00 42.80 3.67
2460 3029 1.801771 TGCAACGGATTAACGAGTTGG 59.198 47.619 15.80 3.89 42.80 3.77
2461 3030 3.529634 TTGCAACGGATTAACGAGTTG 57.470 42.857 0.00 11.95 44.66 3.16
2462 3031 4.555348 TTTTGCAACGGATTAACGAGTT 57.445 36.364 0.00 0.00 37.61 3.01
2463 3032 4.555348 TTTTTGCAACGGATTAACGAGT 57.445 36.364 0.00 0.00 37.61 4.18
2490 3059 2.035704 TGCAAACCTAGCCACAAATGTG 59.964 45.455 6.57 6.57 45.23 3.21
2491 3060 2.315176 TGCAAACCTAGCCACAAATGT 58.685 42.857 0.00 0.00 0.00 2.71
2492 3061 3.059166 GTTGCAAACCTAGCCACAAATG 58.941 45.455 0.00 0.00 42.21 2.32
2493 3062 2.288152 CGTTGCAAACCTAGCCACAAAT 60.288 45.455 0.00 0.00 46.28 2.32
2494 3063 1.066303 CGTTGCAAACCTAGCCACAAA 59.934 47.619 0.00 0.00 46.28 2.83
2495 3064 0.665835 CGTTGCAAACCTAGCCACAA 59.334 50.000 0.00 0.00 46.28 3.33
2496 3065 1.169661 CCGTTGCAAACCTAGCCACA 61.170 55.000 0.00 0.00 46.28 4.17
2497 3066 0.887387 TCCGTTGCAAACCTAGCCAC 60.887 55.000 0.00 0.00 46.28 5.01
2498 3067 0.037590 ATCCGTTGCAAACCTAGCCA 59.962 50.000 0.00 0.00 46.28 4.75
2499 3068 1.173913 AATCCGTTGCAAACCTAGCC 58.826 50.000 0.00 0.00 46.28 3.93
2500 3069 3.726782 CGTTAATCCGTTGCAAACCTAGC 60.727 47.826 0.00 0.00 46.28 3.42
2501 3070 3.680937 TCGTTAATCCGTTGCAAACCTAG 59.319 43.478 0.00 0.00 46.28 3.02
2502 3071 3.661944 TCGTTAATCCGTTGCAAACCTA 58.338 40.909 0.00 0.00 46.28 3.08
2503 3072 2.482721 CTCGTTAATCCGTTGCAAACCT 59.517 45.455 0.00 0.00 46.28 3.50
2504 3073 2.224784 ACTCGTTAATCCGTTGCAAACC 59.775 45.455 0.00 0.00 46.28 3.27
2505 3074 3.531262 ACTCGTTAATCCGTTGCAAAC 57.469 42.857 0.00 0.00 45.31 2.93
2506 3075 3.304123 CCAACTCGTTAATCCGTTGCAAA 60.304 43.478 0.00 0.00 36.36 3.68
2507 3076 2.224549 CCAACTCGTTAATCCGTTGCAA 59.775 45.455 0.00 0.00 36.36 4.08
2508 3077 1.801771 CCAACTCGTTAATCCGTTGCA 59.198 47.619 0.00 0.00 36.36 4.08
2509 3078 1.802365 ACCAACTCGTTAATCCGTTGC 59.198 47.619 0.00 0.00 36.36 4.17
2510 3079 2.158841 CCACCAACTCGTTAATCCGTTG 59.841 50.000 0.00 0.00 37.18 4.10
2511 3080 2.224354 ACCACCAACTCGTTAATCCGTT 60.224 45.455 0.00 0.00 0.00 4.44
2512 3081 1.345415 ACCACCAACTCGTTAATCCGT 59.655 47.619 0.00 0.00 0.00 4.69
2513 3082 2.088950 ACCACCAACTCGTTAATCCG 57.911 50.000 0.00 0.00 0.00 4.18
2514 3083 4.517832 AGAAAACCACCAACTCGTTAATCC 59.482 41.667 0.00 0.00 0.00 3.01
2515 3084 5.449304 CAGAAAACCACCAACTCGTTAATC 58.551 41.667 0.00 0.00 0.00 1.75
2516 3085 4.261447 GCAGAAAACCACCAACTCGTTAAT 60.261 41.667 0.00 0.00 0.00 1.40
2517 3086 3.065648 GCAGAAAACCACCAACTCGTTAA 59.934 43.478 0.00 0.00 0.00 2.01
2518 3087 2.614983 GCAGAAAACCACCAACTCGTTA 59.385 45.455 0.00 0.00 0.00 3.18
2519 3088 1.404035 GCAGAAAACCACCAACTCGTT 59.596 47.619 0.00 0.00 0.00 3.85
2520 3089 1.021968 GCAGAAAACCACCAACTCGT 58.978 50.000 0.00 0.00 0.00 4.18
2521 3090 1.021202 TGCAGAAAACCACCAACTCG 58.979 50.000 0.00 0.00 0.00 4.18
2522 3091 3.186909 GTTTGCAGAAAACCACCAACTC 58.813 45.455 0.00 0.00 42.06 3.01
2523 3092 3.245518 GTTTGCAGAAAACCACCAACT 57.754 42.857 0.00 0.00 42.06 3.16
2531 3100 2.360801 TGTGGCTAGGTTTGCAGAAAAC 59.639 45.455 0.00 0.00 46.32 2.43
2532 3101 2.660572 TGTGGCTAGGTTTGCAGAAAA 58.339 42.857 0.00 0.00 0.00 2.29
2533 3102 2.356665 TGTGGCTAGGTTTGCAGAAA 57.643 45.000 0.00 0.00 0.00 2.52
2534 3103 2.356665 TTGTGGCTAGGTTTGCAGAA 57.643 45.000 0.00 0.00 0.00 3.02
2535 3104 2.356665 TTTGTGGCTAGGTTTGCAGA 57.643 45.000 0.00 0.00 0.00 4.26
2536 3105 2.297033 ACATTTGTGGCTAGGTTTGCAG 59.703 45.455 0.00 0.00 0.00 4.41
2537 3106 2.035704 CACATTTGTGGCTAGGTTTGCA 59.964 45.455 2.69 0.00 42.10 4.08
2538 3107 2.676076 CACATTTGTGGCTAGGTTTGC 58.324 47.619 2.69 0.00 42.10 3.68
2549 3118 2.865551 GCAAGAAACCACCACATTTGTG 59.134 45.455 3.67 3.67 45.23 3.33
2550 3119 2.499289 TGCAAGAAACCACCACATTTGT 59.501 40.909 0.00 0.00 0.00 2.83
2551 3120 3.176552 TGCAAGAAACCACCACATTTG 57.823 42.857 0.00 0.00 0.00 2.32
2552 3121 3.902881 TTGCAAGAAACCACCACATTT 57.097 38.095 0.00 0.00 0.00 2.32
2553 3122 4.128643 CAATTGCAAGAAACCACCACATT 58.871 39.130 4.94 0.00 0.00 2.71
2554 3123 3.387374 TCAATTGCAAGAAACCACCACAT 59.613 39.130 4.94 0.00 0.00 3.21
2555 3124 2.762887 TCAATTGCAAGAAACCACCACA 59.237 40.909 4.94 0.00 0.00 4.17
2556 3125 3.123050 GTCAATTGCAAGAAACCACCAC 58.877 45.455 4.94 0.00 0.00 4.16
2557 3126 3.030291 AGTCAATTGCAAGAAACCACCA 58.970 40.909 4.94 0.00 0.00 4.17
2558 3127 3.068024 TGAGTCAATTGCAAGAAACCACC 59.932 43.478 4.94 0.00 0.00 4.61
2559 3128 4.305989 TGAGTCAATTGCAAGAAACCAC 57.694 40.909 4.94 1.43 0.00 4.16
2560 3129 4.998671 TTGAGTCAATTGCAAGAAACCA 57.001 36.364 4.94 1.01 0.00 3.67
2561 3130 4.925646 GGATTGAGTCAATTGCAAGAAACC 59.074 41.667 19.19 8.90 33.90 3.27
2562 3131 5.776744 AGGATTGAGTCAATTGCAAGAAAC 58.223 37.500 19.19 2.49 33.90 2.78
2563 3132 6.151648 CCTAGGATTGAGTCAATTGCAAGAAA 59.848 38.462 19.19 0.48 33.90 2.52
2564 3133 5.649395 CCTAGGATTGAGTCAATTGCAAGAA 59.351 40.000 19.19 1.85 33.90 2.52
2565 3134 5.188434 CCTAGGATTGAGTCAATTGCAAGA 58.812 41.667 19.19 0.00 33.90 3.02
2566 3135 4.201990 GCCTAGGATTGAGTCAATTGCAAG 60.202 45.833 19.19 13.45 33.90 4.01
2567 3136 3.696051 GCCTAGGATTGAGTCAATTGCAA 59.304 43.478 19.19 0.00 33.90 4.08
2568 3137 3.282021 GCCTAGGATTGAGTCAATTGCA 58.718 45.455 19.19 6.88 33.90 4.08
2569 3138 2.289002 CGCCTAGGATTGAGTCAATTGC 59.711 50.000 19.19 14.69 33.90 3.56
2570 3139 3.535561 ACGCCTAGGATTGAGTCAATTG 58.464 45.455 19.19 10.03 33.90 2.32
2571 3140 3.197766 TGACGCCTAGGATTGAGTCAATT 59.802 43.478 19.19 7.48 35.94 2.32
2572 3141 2.766263 TGACGCCTAGGATTGAGTCAAT 59.234 45.455 18.31 18.31 35.94 2.57
2573 3142 2.094182 GTGACGCCTAGGATTGAGTCAA 60.094 50.000 14.75 8.27 39.80 3.18
2574 3143 1.476891 GTGACGCCTAGGATTGAGTCA 59.523 52.381 14.75 15.27 36.43 3.41
2575 3144 1.751924 AGTGACGCCTAGGATTGAGTC 59.248 52.381 14.75 12.95 0.00 3.36
2576 3145 1.853963 AGTGACGCCTAGGATTGAGT 58.146 50.000 14.75 3.38 0.00 3.41
2577 3146 2.969628 AAGTGACGCCTAGGATTGAG 57.030 50.000 14.75 0.00 0.00 3.02
2578 3147 3.118884 GGTTAAGTGACGCCTAGGATTGA 60.119 47.826 14.75 0.00 0.00 2.57
2579 3148 3.195661 GGTTAAGTGACGCCTAGGATTG 58.804 50.000 14.75 3.52 0.00 2.67
2580 3149 2.835764 TGGTTAAGTGACGCCTAGGATT 59.164 45.455 14.75 0.00 0.00 3.01
2581 3150 2.463752 TGGTTAAGTGACGCCTAGGAT 58.536 47.619 14.75 0.00 0.00 3.24
2582 3151 1.927487 TGGTTAAGTGACGCCTAGGA 58.073 50.000 14.75 0.00 0.00 2.94
2583 3152 2.093658 ACATGGTTAAGTGACGCCTAGG 60.094 50.000 3.67 3.67 0.00 3.02
2584 3153 3.247006 ACATGGTTAAGTGACGCCTAG 57.753 47.619 0.00 0.00 0.00 3.02
2585 3154 3.259876 AGAACATGGTTAAGTGACGCCTA 59.740 43.478 0.00 0.00 0.00 3.93
2586 3155 2.038557 AGAACATGGTTAAGTGACGCCT 59.961 45.455 0.00 0.00 0.00 5.52
2587 3156 2.159627 CAGAACATGGTTAAGTGACGCC 59.840 50.000 0.00 0.00 0.00 5.68
2588 3157 2.806244 ACAGAACATGGTTAAGTGACGC 59.194 45.455 0.00 0.00 0.00 5.19
2589 3158 4.750098 AGAACAGAACATGGTTAAGTGACG 59.250 41.667 0.00 0.00 0.00 4.35
2722 3291 0.954452 CCTGCACTGAAACAAGTCCC 59.046 55.000 0.00 0.00 0.00 4.46
2845 3414 7.873699 AAGAGTAATAGTAGTAATGGCCCAT 57.126 36.000 0.00 0.00 0.00 4.00
2926 3496 4.095036 GGCAAGTCTATTTAGTGGAAGTGC 59.905 45.833 0.00 0.00 32.11 4.40
3016 3586 5.774690 TCTGAAAAACCATAACTTCCTGCAT 59.225 36.000 0.00 0.00 0.00 3.96
3074 3644 6.089920 TGTGAATTAGCGAATAGTTTGACG 57.910 37.500 0.00 0.00 0.00 4.35
3083 3653 5.408356 AGTACGACTTGTGAATTAGCGAAT 58.592 37.500 0.00 0.00 0.00 3.34
3087 3657 9.680315 AAGATATAGTACGACTTGTGAATTAGC 57.320 33.333 0.00 0.00 0.00 3.09
3297 3867 6.489361 AGGCTTCTAATATGCTGAGGAATTTG 59.511 38.462 0.00 0.00 0.00 2.32
3353 3923 3.199442 TCCTCCTACCAATGAAGTGGA 57.801 47.619 3.39 0.00 41.65 4.02
3355 3925 3.209410 GCATCCTCCTACCAATGAAGTG 58.791 50.000 0.00 0.00 0.00 3.16
3361 3931 4.416848 ACATTAAGGCATCCTCCTACCAAT 59.583 41.667 0.00 0.00 34.82 3.16
3365 3935 5.652452 ACAAAACATTAAGGCATCCTCCTAC 59.348 40.000 0.00 0.00 34.82 3.18
3371 3941 5.869344 GGAGAAACAAAACATTAAGGCATCC 59.131 40.000 0.00 0.00 0.00 3.51
3454 4024 7.668525 AAGTAATTAGTGCACCTTGTAAGAC 57.331 36.000 14.63 7.99 0.00 3.01
3481 4052 7.284489 TGTGTAGGGAAAATAGCAAATATCACC 59.716 37.037 0.00 0.00 0.00 4.02
3509 4080 4.283363 ACATGATAGGGCAAGCTATCTG 57.717 45.455 0.00 8.11 34.59 2.90
3517 4088 7.471260 GCCATAAAAACATACATGATAGGGCAA 60.471 37.037 0.00 0.00 34.47 4.52
3556 4127 2.530460 ATAAGCCTGTTCCATGCCAA 57.470 45.000 0.00 0.00 0.00 4.52
3569 4140 2.093128 TCTGTCCCGGAAGAAATAAGCC 60.093 50.000 0.73 0.00 0.00 4.35
3583 4154 1.070289 AGTTCGGAACTGTTCTGTCCC 59.930 52.381 21.86 15.05 41.01 4.46
3603 4174 8.529476 GGGAGACTAGTTAACTTCATGTAGAAA 58.471 37.037 14.49 0.00 35.40 2.52
3636 4207 8.458052 CCAGAAAAATTTTGCCAACTACTTTTT 58.542 29.630 3.73 0.00 0.00 1.94
3637 4208 7.609918 ACCAGAAAAATTTTGCCAACTACTTTT 59.390 29.630 3.73 0.00 0.00 2.27
3638 4209 7.065683 CACCAGAAAAATTTTGCCAACTACTTT 59.934 33.333 3.73 0.00 0.00 2.66
3639 4210 6.538381 CACCAGAAAAATTTTGCCAACTACTT 59.462 34.615 3.73 0.00 0.00 2.24
3640 4211 6.048509 CACCAGAAAAATTTTGCCAACTACT 58.951 36.000 3.73 0.00 0.00 2.57
3641 4212 5.236263 CCACCAGAAAAATTTTGCCAACTAC 59.764 40.000 3.73 0.00 0.00 2.73
3642 4213 5.363939 CCACCAGAAAAATTTTGCCAACTA 58.636 37.500 3.73 0.00 0.00 2.24
3643 4214 4.198530 CCACCAGAAAAATTTTGCCAACT 58.801 39.130 3.73 0.00 0.00 3.16
3644 4215 3.314913 CCCACCAGAAAAATTTTGCCAAC 59.685 43.478 3.73 0.00 0.00 3.77
3645 4216 3.054065 ACCCACCAGAAAAATTTTGCCAA 60.054 39.130 3.73 0.00 0.00 4.52
3646 4217 2.507471 ACCCACCAGAAAAATTTTGCCA 59.493 40.909 3.73 0.00 0.00 4.92
3647 4218 2.877786 CACCCACCAGAAAAATTTTGCC 59.122 45.455 3.73 0.00 0.00 4.52
3648 4219 2.290367 GCACCCACCAGAAAAATTTTGC 59.710 45.455 3.73 1.83 0.00 3.68
3649 4220 3.807553 AGCACCCACCAGAAAAATTTTG 58.192 40.909 3.73 0.00 0.00 2.44
3650 4221 4.502105 AAGCACCCACCAGAAAAATTTT 57.498 36.364 0.00 0.00 0.00 1.82
3651 4222 5.823861 ATAAGCACCCACCAGAAAAATTT 57.176 34.783 0.00 0.00 0.00 1.82
3652 4223 5.279960 GGAATAAGCACCCACCAGAAAAATT 60.280 40.000 0.00 0.00 0.00 1.82
3653 4224 4.222810 GGAATAAGCACCCACCAGAAAAAT 59.777 41.667 0.00 0.00 0.00 1.82
3715 4286 1.260538 CCTGACAGGCAGCTAGTGGA 61.261 60.000 8.99 0.00 43.50 4.02
3748 4319 1.435577 GCCAAATGGTACGTCGAACT 58.564 50.000 0.00 0.00 37.57 3.01
3753 4324 1.149987 TGTTCGCCAAATGGTACGTC 58.850 50.000 0.00 0.00 37.57 4.34
3771 4342 8.846943 TGCAAACTATGGGTTAGACATATATG 57.153 34.615 11.29 11.29 37.12 1.78
3776 4347 5.179452 ACTGCAAACTATGGGTTAGACAT 57.821 39.130 0.00 0.00 37.12 3.06
4052 4631 5.096849 GCTAAGAATCTATTCCCGATCGAC 58.903 45.833 18.66 0.00 37.51 4.20
4317 4897 7.924947 TGATCAACACAAAATGAATACTGCAAA 59.075 29.630 0.00 0.00 0.00 3.68
4387 4967 2.502142 ATTGCAGCTGATGGTGAGAA 57.498 45.000 20.43 0.00 43.76 2.87
4389 4969 3.881089 TCATAATTGCAGCTGATGGTGAG 59.119 43.478 20.43 1.59 43.76 3.51
4434 5014 3.859961 CGACTGAATGTAGCACCTAACAG 59.140 47.826 0.00 0.00 0.00 3.16
4455 5035 5.991328 AGCAATCTAACAATACCATCACG 57.009 39.130 0.00 0.00 0.00 4.35
4498 5078 8.442632 TCAGTCTGCAAATAAAATAGGATCAG 57.557 34.615 0.00 0.00 0.00 2.90
4527 5107 3.431922 TCCACGGCTTCTACTAAATCG 57.568 47.619 0.00 0.00 0.00 3.34
4530 5110 4.951715 TCACTATCCACGGCTTCTACTAAA 59.048 41.667 0.00 0.00 0.00 1.85
4545 5125 6.655003 TCAACATTTTTCTGAGGTCACTATCC 59.345 38.462 0.00 0.00 0.00 2.59
4548 5128 9.567776 TTTATCAACATTTTTCTGAGGTCACTA 57.432 29.630 0.00 0.00 0.00 2.74
4549 5129 8.463930 TTTATCAACATTTTTCTGAGGTCACT 57.536 30.769 0.00 0.00 0.00 3.41
4575 5155 0.041833 AAGGGTCTGCTGCTCTAGGA 59.958 55.000 0.00 0.00 0.00 2.94
4698 5278 1.263356 CTCCTAGGAACAACCCGTCA 58.737 55.000 13.77 0.00 40.05 4.35
4871 5451 8.321353 ACTACAGAATCTCATGATGTTTTACCA 58.679 33.333 4.33 0.00 32.44 3.25
4934 5514 4.563184 CGAACTACAGGAAAGAGCACATAC 59.437 45.833 0.00 0.00 0.00 2.39
5016 5596 7.935338 AGCATACAACAAAATCTTCACAAAG 57.065 32.000 0.00 0.00 0.00 2.77
5068 5700 9.784680 CTACTTTTAGTGATCTAAACGCTCTTA 57.215 33.333 0.00 0.00 43.20 2.10
5069 5701 8.305317 ACTACTTTTAGTGATCTAAACGCTCTT 58.695 33.333 0.00 0.00 43.20 2.85
5070 5702 7.828712 ACTACTTTTAGTGATCTAAACGCTCT 58.171 34.615 0.00 0.00 43.20 4.09
5084 5716 7.828712 AGAGCGTTTAGATCACTACTTTTAGT 58.171 34.615 0.00 0.00 39.30 2.24
5085 5717 8.690680 AAGAGCGTTTAGATCACTACTTTTAG 57.309 34.615 0.00 0.00 37.82 1.85
5093 5725 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
5101 5733 8.237267 CCTCTGAAAACAAATATAAGAGCGTTT 58.763 33.333 0.00 0.00 0.00 3.60
5102 5734 7.148239 CCCTCTGAAAACAAATATAAGAGCGTT 60.148 37.037 0.00 0.00 0.00 4.84
5103 5735 6.316390 CCCTCTGAAAACAAATATAAGAGCGT 59.684 38.462 0.00 0.00 0.00 5.07
5104 5736 6.538742 TCCCTCTGAAAACAAATATAAGAGCG 59.461 38.462 0.00 0.00 0.00 5.03
5105 5737 7.554476 ACTCCCTCTGAAAACAAATATAAGAGC 59.446 37.037 0.00 0.00 0.00 4.09
5109 5741 9.886132 GTCTACTCCCTCTGAAAACAAATATAA 57.114 33.333 0.00 0.00 0.00 0.98
5117 5749 2.674462 GCGGTCTACTCCCTCTGAAAAC 60.674 54.545 0.00 0.00 0.00 2.43
5121 5753 0.331954 AAGCGGTCTACTCCCTCTGA 59.668 55.000 0.00 0.00 0.00 3.27
5123 5755 0.331954 TGAAGCGGTCTACTCCCTCT 59.668 55.000 0.00 0.00 0.00 3.69
5135 5767 1.136147 GCTCAGCACATTGAAGCGG 59.864 57.895 0.00 0.00 35.48 5.52
5211 5844 8.574196 AAAGTAAATCTTGTCGGTGAAATTTG 57.426 30.769 0.00 0.00 36.40 2.32
5337 5974 0.108992 ACGCGTATTTCGAGGCTCAA 60.109 50.000 11.67 2.19 43.23 3.02
5341 5978 2.320044 GCACGCGTATTTCGAGGC 59.680 61.111 13.44 4.47 43.23 4.70
5352 5989 0.234625 ATATTTACATGGCGCACGCG 59.765 50.000 10.83 3.53 43.06 6.01
5353 5990 1.662876 CCATATTTACATGGCGCACGC 60.663 52.381 10.83 6.46 39.18 5.34
5358 5995 3.253188 CCTTGGTCCATATTTACATGGCG 59.747 47.826 0.00 0.00 44.47 5.69
5367 6004 5.551583 TGTATATGCTCCCTTGGTCCATATT 59.448 40.000 0.00 1.76 33.41 1.28
5376 6013 7.884877 TCAGGATTATTTGTATATGCTCCCTTG 59.115 37.037 0.00 0.00 0.00 3.61
5378 6015 7.238514 ACTCAGGATTATTTGTATATGCTCCCT 59.761 37.037 0.00 0.00 0.00 4.20
5437 6078 7.660208 ACAGTAATAGTCAAGTTGTAACCTTGG 59.340 37.037 2.11 0.00 0.00 3.61
5440 6081 8.191534 AGACAGTAATAGTCAAGTTGTAACCT 57.808 34.615 2.11 0.00 38.46 3.50
5441 6082 8.086522 TGAGACAGTAATAGTCAAGTTGTAACC 58.913 37.037 2.11 0.00 38.46 2.85
5451 6152 8.122472 TCAACAGAATGAGACAGTAATAGTCA 57.878 34.615 0.00 0.00 39.69 3.41
5548 6249 4.473520 AATGACTCCGCGCCCCTG 62.474 66.667 0.00 0.00 0.00 4.45
5549 6250 4.473520 CAATGACTCCGCGCCCCT 62.474 66.667 0.00 0.00 0.00 4.79
5551 6252 4.467084 TCCAATGACTCCGCGCCC 62.467 66.667 0.00 0.00 0.00 6.13
5552 6253 2.892425 CTCCAATGACTCCGCGCC 60.892 66.667 0.00 0.00 0.00 6.53
5553 6254 1.741770 AACTCCAATGACTCCGCGC 60.742 57.895 0.00 0.00 0.00 6.86
5554 6255 0.670546 ACAACTCCAATGACTCCGCG 60.671 55.000 0.00 0.00 0.00 6.46
5555 6256 1.079503 GACAACTCCAATGACTCCGC 58.920 55.000 0.00 0.00 0.00 5.54
5556 6257 2.069273 GTGACAACTCCAATGACTCCG 58.931 52.381 0.00 0.00 0.00 4.63
5557 6258 2.808543 GTGTGACAACTCCAATGACTCC 59.191 50.000 0.00 0.00 0.00 3.85
5559 6260 2.487265 GGGTGTGACAACTCCAATGACT 60.487 50.000 0.00 0.00 41.00 3.41
5560 6261 1.880027 GGGTGTGACAACTCCAATGAC 59.120 52.381 0.00 0.00 41.00 3.06
5561 6262 1.202879 GGGGTGTGACAACTCCAATGA 60.203 52.381 0.00 0.00 40.78 2.57
5562 6263 1.202927 AGGGGTGTGACAACTCCAATG 60.203 52.381 0.00 0.00 43.88 2.82
5563 6264 1.149101 AGGGGTGTGACAACTCCAAT 58.851 50.000 0.00 0.00 43.88 3.16
5564 6265 0.182537 CAGGGGTGTGACAACTCCAA 59.817 55.000 0.00 0.00 43.88 3.53
5565 6266 0.692756 TCAGGGGTGTGACAACTCCA 60.693 55.000 0.00 0.00 43.88 3.86
5566 6267 0.035458 CTCAGGGGTGTGACAACTCC 59.965 60.000 0.00 0.00 41.49 3.85
5567 6268 1.001406 CTCTCAGGGGTGTGACAACTC 59.999 57.143 0.00 0.00 0.00 3.01
5568 6269 1.051812 CTCTCAGGGGTGTGACAACT 58.948 55.000 0.00 0.00 0.00 3.16
5569 6270 0.759346 ACTCTCAGGGGTGTGACAAC 59.241 55.000 0.00 0.00 0.00 3.32
5571 6272 0.105709 TCACTCTCAGGGGTGTGACA 60.106 55.000 0.19 0.00 34.94 3.58
5572 6273 1.001406 CTTCACTCTCAGGGGTGTGAC 59.999 57.143 3.70 0.00 38.87 3.67
5573 6274 1.133167 TCTTCACTCTCAGGGGTGTGA 60.133 52.381 0.19 0.19 37.62 3.58
5575 6276 2.334006 ATCTTCACTCTCAGGGGTGT 57.666 50.000 0.00 0.00 35.26 4.16
5576 6277 3.710209 AAATCTTCACTCTCAGGGGTG 57.290 47.619 0.00 0.00 35.06 4.61
5577 6278 3.307059 CGAAAATCTTCACTCTCAGGGGT 60.307 47.826 0.00 0.00 0.00 4.95
5578 6279 3.055819 TCGAAAATCTTCACTCTCAGGGG 60.056 47.826 0.00 0.00 0.00 4.79
5579 6280 4.193826 TCGAAAATCTTCACTCTCAGGG 57.806 45.455 0.00 0.00 0.00 4.45
5580 6281 6.568869 ACTATCGAAAATCTTCACTCTCAGG 58.431 40.000 0.00 0.00 0.00 3.86
5581 6282 7.378461 GCTACTATCGAAAATCTTCACTCTCAG 59.622 40.741 0.00 0.00 0.00 3.35
5583 6284 6.639279 GGCTACTATCGAAAATCTTCACTCTC 59.361 42.308 0.00 0.00 0.00 3.20
5584 6285 6.461788 GGGCTACTATCGAAAATCTTCACTCT 60.462 42.308 0.00 0.00 0.00 3.24
5585 6286 5.692654 GGGCTACTATCGAAAATCTTCACTC 59.307 44.000 0.00 0.00 0.00 3.51
5586 6287 5.602628 GGGCTACTATCGAAAATCTTCACT 58.397 41.667 0.00 0.00 0.00 3.41
5587 6288 4.444720 CGGGCTACTATCGAAAATCTTCAC 59.555 45.833 0.00 0.00 0.00 3.18
5598 6324 4.444720 GTCAAATTCTTCGGGCTACTATCG 59.555 45.833 0.00 0.00 0.00 2.92
5605 6331 2.554032 CTGTTGTCAAATTCTTCGGGCT 59.446 45.455 0.00 0.00 0.00 5.19
5625 6351 6.071391 GGTCAATTTGGTATGTCCATTCAACT 60.071 38.462 0.00 0.00 46.60 3.16
5643 6369 8.906867 CATAATGTGAAGAGGTATTGGTCAATT 58.093 33.333 1.28 0.00 32.50 2.32
5646 6372 7.194112 TCATAATGTGAAGAGGTATTGGTCA 57.806 36.000 0.00 0.00 32.78 4.02
5664 6390 2.172505 TGGGCCACACGATCTTCATAAT 59.827 45.455 0.00 0.00 0.00 1.28
5665 6391 1.557371 TGGGCCACACGATCTTCATAA 59.443 47.619 0.00 0.00 0.00 1.90
5676 6402 0.385390 CACTTGAACTTGGGCCACAC 59.615 55.000 5.23 0.00 0.00 3.82
5696 6422 2.643551 CGAAAAGTGATGGCCACCTAT 58.356 47.619 8.16 0.00 46.87 2.57
5700 6426 1.154225 CGCGAAAAGTGATGGCCAC 60.154 57.895 8.16 2.36 46.03 5.01
5720 6446 5.009710 TCAGAGATAGAGTTGACAACGTTGT 59.990 40.000 32.77 32.77 45.65 3.32
5725 6451 5.719173 AGCTTCAGAGATAGAGTTGACAAC 58.281 41.667 10.47 10.47 0.00 3.32
5733 6459 9.176181 GTAAAAACGATAGCTTCAGAGATAGAG 57.824 37.037 0.00 0.00 42.67 2.43
5735 6461 7.921214 TGGTAAAAACGATAGCTTCAGAGATAG 59.079 37.037 0.00 0.00 42.67 2.08
5749 6530 5.767816 AGAAAGCAAGTGGTAAAAACGAT 57.232 34.783 0.00 0.00 0.00 3.73
5755 6536 6.478512 AAATGGAAGAAAGCAAGTGGTAAA 57.521 33.333 0.00 0.00 0.00 2.01
5756 6537 7.232534 ACATAAATGGAAGAAAGCAAGTGGTAA 59.767 33.333 0.00 0.00 0.00 2.85
5757 6538 6.719370 ACATAAATGGAAGAAAGCAAGTGGTA 59.281 34.615 0.00 0.00 0.00 3.25
5758 6539 5.539955 ACATAAATGGAAGAAAGCAAGTGGT 59.460 36.000 0.00 0.00 0.00 4.16
5759 6540 6.029346 ACATAAATGGAAGAAAGCAAGTGG 57.971 37.500 0.00 0.00 0.00 4.00
5760 6541 7.652909 TCAAACATAAATGGAAGAAAGCAAGTG 59.347 33.333 0.00 0.00 0.00 3.16
5761 6542 7.653311 GTCAAACATAAATGGAAGAAAGCAAGT 59.347 33.333 0.00 0.00 0.00 3.16
5763 6544 7.725251 AGTCAAACATAAATGGAAGAAAGCAA 58.275 30.769 0.00 0.00 0.00 3.91
5764 6545 7.288810 AGTCAAACATAAATGGAAGAAAGCA 57.711 32.000 0.00 0.00 0.00 3.91
5765 6546 9.294030 CATAGTCAAACATAAATGGAAGAAAGC 57.706 33.333 0.00 0.00 0.00 3.51
5768 6549 8.664798 CGACATAGTCAAACATAAATGGAAGAA 58.335 33.333 0.00 0.00 32.09 2.52
5769 6550 7.201609 GCGACATAGTCAAACATAAATGGAAGA 60.202 37.037 0.00 0.00 32.09 2.87
5770 6551 6.907212 GCGACATAGTCAAACATAAATGGAAG 59.093 38.462 0.00 0.00 32.09 3.46
5771 6552 6.183360 GGCGACATAGTCAAACATAAATGGAA 60.183 38.462 0.00 0.00 32.09 3.53
5772 6553 5.295787 GGCGACATAGTCAAACATAAATGGA 59.704 40.000 0.00 0.00 32.09 3.41
5773 6554 5.296780 AGGCGACATAGTCAAACATAAATGG 59.703 40.000 0.00 0.00 32.09 3.16
5774 6555 6.363577 AGGCGACATAGTCAAACATAAATG 57.636 37.500 0.00 0.00 32.09 2.32
5775 6556 6.200286 CGTAGGCGACATAGTCAAACATAAAT 59.800 38.462 0.00 0.00 41.33 1.40
5776 6557 5.517411 CGTAGGCGACATAGTCAAACATAAA 59.483 40.000 0.00 0.00 41.33 1.40
5777 6558 5.038683 CGTAGGCGACATAGTCAAACATAA 58.961 41.667 0.00 0.00 41.33 1.90
5778 6559 4.603985 CGTAGGCGACATAGTCAAACATA 58.396 43.478 0.00 0.00 41.33 2.29
5779 6560 3.444916 CGTAGGCGACATAGTCAAACAT 58.555 45.455 0.00 0.00 41.33 2.71
5780 6561 2.871133 CGTAGGCGACATAGTCAAACA 58.129 47.619 0.00 0.00 41.33 2.83
5785 6566 0.661552 TCAGCGTAGGCGACATAGTC 59.338 55.000 1.05 0.00 46.35 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.