Multiple sequence alignment - TraesCS5D01G055500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G055500 chr5D 100.000 3550 0 0 1 3550 52241522 52245071 0.000000e+00 6556.0
1 TraesCS5D01G055500 chr5D 100.000 2466 0 0 3845 6310 52245366 52247831 0.000000e+00 4554.0
2 TraesCS5D01G055500 chr5D 98.559 694 3 3 1 693 550502185 550502872 0.000000e+00 1219.0
3 TraesCS5D01G055500 chr5B 92.274 2524 118 31 3845 6310 55266918 55269422 0.000000e+00 3509.0
4 TraesCS5D01G055500 chr5B 91.527 1428 119 2 2124 3550 55265449 55266875 0.000000e+00 1965.0
5 TraesCS5D01G055500 chr5B 83.752 517 30 25 692 1187 55263816 55264299 2.090000e-119 440.0
6 TraesCS5D01G055500 chr5B 81.111 450 46 22 1679 2104 55265042 55265476 2.190000e-84 324.0
7 TraesCS5D01G055500 chr5B 81.562 320 20 21 1277 1569 55264660 55264967 1.770000e-55 228.0
8 TraesCS5D01G055500 chr5B 90.741 54 5 0 6060 6113 326006336 326006389 8.770000e-09 73.1
9 TraesCS5D01G055500 chr5A 91.285 1790 103 31 4310 6070 41335752 41337517 0.000000e+00 2392.0
10 TraesCS5D01G055500 chr5A 92.502 1427 107 0 2124 3550 41333838 41335264 0.000000e+00 2043.0
11 TraesCS5D01G055500 chr5A 85.026 768 46 29 694 1430 41332514 41333243 0.000000e+00 717.0
12 TraesCS5D01G055500 chr5A 91.031 446 16 6 3845 4266 41335307 41335752 1.180000e-161 580.0
13 TraesCS5D01G055500 chr5A 86.377 345 31 8 5737 6070 41341439 41341778 4.650000e-96 363.0
14 TraesCS5D01G055500 chr5A 92.342 222 8 3 5852 6070 41340458 41340673 2.210000e-79 307.0
15 TraesCS5D01G055500 chr5A 83.188 345 38 8 1760 2103 41333539 41333864 1.330000e-76 298.0
16 TraesCS5D01G055500 chr5A 96.250 160 6 0 6138 6297 41337545 41337704 4.850000e-66 263.0
17 TraesCS5D01G055500 chr5A 85.057 261 20 12 5441 5689 41340197 41340450 1.360000e-61 248.0
18 TraesCS5D01G055500 chr5A 90.278 72 6 1 6240 6310 41341848 41341919 6.740000e-15 93.5
19 TraesCS5D01G055500 chr5A 85.075 67 5 5 6068 6129 23817591 23817525 5.280000e-06 63.9
20 TraesCS5D01G055500 chr3B 96.691 695 15 4 1 693 52881512 52880824 0.000000e+00 1149.0
21 TraesCS5D01G055500 chr3B 100.000 41 0 0 6069 6109 181496197 181496237 6.780000e-10 76.8
22 TraesCS5D01G055500 chr7D 99.059 425 4 0 268 692 590439873 590439449 0.000000e+00 763.0
23 TraesCS5D01G055500 chr7D 100.000 62 0 0 631 692 507429672 507429733 1.440000e-21 115.0
24 TraesCS5D01G055500 chr7B 100.000 42 0 0 6068 6109 746315402 746315361 1.890000e-10 78.7
25 TraesCS5D01G055500 chr3A 95.918 49 1 1 6061 6109 111554914 111554961 1.890000e-10 78.7
26 TraesCS5D01G055500 chr4D 97.674 43 1 0 6068 6110 77128946 77128904 2.440000e-09 75.0
27 TraesCS5D01G055500 chr2D 95.652 46 2 0 6068 6113 560965875 560965830 2.440000e-09 75.0
28 TraesCS5D01G055500 chr3D 97.619 42 1 0 6068 6109 57160222 57160263 8.770000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G055500 chr5D 52241522 52247831 6309 False 5555.00 6556 100.0000 1 6310 2 chr5D.!!$F2 6309
1 TraesCS5D01G055500 chr5D 550502185 550502872 687 False 1219.00 1219 98.5590 1 693 1 chr5D.!!$F1 692
2 TraesCS5D01G055500 chr5B 55263816 55269422 5606 False 1293.20 3509 86.0452 692 6310 5 chr5B.!!$F2 5618
3 TraesCS5D01G055500 chr5A 41332514 41341919 9405 False 730.45 2392 89.3336 694 6310 10 chr5A.!!$F1 5616
4 TraesCS5D01G055500 chr3B 52880824 52881512 688 True 1149.00 1149 96.6910 1 693 1 chr3B.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 893 0.107703 TTGGTCGTGATGAGGCATCC 60.108 55.0 0.00 0.00 39.87 3.51 F
878 897 0.107703 TCGTGATGAGGCATCCAACC 60.108 55.0 0.00 0.00 39.87 3.77 F
1638 1977 0.323360 TGGGTAGGGCAATTGACTGC 60.323 55.0 11.97 10.29 41.85 4.40 F
2372 2749 0.528017 CAGCTTCAGAGTCCAGCGTA 59.472 55.0 0.00 0.00 38.66 4.42 F
2846 3223 0.642291 CTGCACAAGTAGTCGATGCG 59.358 55.0 0.00 0.00 39.18 4.73 F
3236 3613 0.671796 TCAAAGGCGAGTCGAGTTCA 59.328 50.0 18.61 0.00 0.00 3.18 F
4946 5368 0.396435 TTGCTAGTGTGACCAGGGTG 59.604 55.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2777 3154 0.674895 ACAGCAAACCTCGGAGATGC 60.675 55.000 17.17 17.17 33.89 3.91 R
2870 3247 2.431057 ACTGAGTTTTGACTCGGACAGT 59.569 45.455 19.21 7.40 43.87 3.55 R
3359 3736 0.596600 GGACAGTCGCGTCAAGTGAA 60.597 55.000 5.77 0.00 41.58 3.18 R
3362 3739 2.050351 CGGACAGTCGCGTCAAGT 60.050 61.111 5.77 3.29 37.66 3.16 R
4711 5123 0.965866 AGAATCTCGGTCACCTGCGA 60.966 55.000 0.00 0.00 0.00 5.10 R
5005 5430 1.002773 ACAAGCGAACCCTACGGATTT 59.997 47.619 0.00 0.00 0.00 2.17 R
5914 6372 1.421646 CACCTCAACACCCTTCCTCTT 59.578 52.381 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.695666 AGATACTGTCCTGGGATCAACG 59.304 50.000 0.00 0.00 0.00 4.10
200 202 1.687123 CCGGATACAGGGGTAGTCAAG 59.313 57.143 0.00 0.00 31.88 3.02
201 203 2.662866 CGGATACAGGGGTAGTCAAGA 58.337 52.381 0.00 0.00 31.88 3.02
202 204 3.231818 CGGATACAGGGGTAGTCAAGAT 58.768 50.000 0.00 0.00 31.88 2.40
203 205 3.641906 CGGATACAGGGGTAGTCAAGATT 59.358 47.826 0.00 0.00 31.88 2.40
204 206 4.831155 CGGATACAGGGGTAGTCAAGATTA 59.169 45.833 0.00 0.00 31.88 1.75
746 752 3.857157 AGGAGGAGCACAGTGTAAAAA 57.143 42.857 1.61 0.00 0.00 1.94
752 763 5.246307 AGGAGCACAGTGTAAAAATAGTCC 58.754 41.667 1.61 0.00 0.00 3.85
764 775 5.405935 AAAAATAGTCCACATCAAAGGGC 57.594 39.130 0.00 0.00 0.00 5.19
766 777 3.737559 ATAGTCCACATCAAAGGGCAA 57.262 42.857 0.00 0.00 29.98 4.52
794 805 1.059369 CGCGAATCTCAAGGCAACG 59.941 57.895 0.00 0.00 46.39 4.10
824 835 2.262915 GACCCGTGAGTGAGCCAG 59.737 66.667 0.00 0.00 0.00 4.85
825 836 3.941657 GACCCGTGAGTGAGCCAGC 62.942 68.421 0.00 0.00 0.00 4.85
827 838 4.056125 CCGTGAGTGAGCCAGCGA 62.056 66.667 0.00 0.00 0.00 4.93
828 839 2.807045 CGTGAGTGAGCCAGCGAC 60.807 66.667 0.00 0.00 0.00 5.19
859 878 0.250166 CCCTCGTTCCTCGTTTTGGT 60.250 55.000 0.00 0.00 40.80 3.67
865 884 2.140717 GTTCCTCGTTTTGGTCGTGAT 58.859 47.619 0.00 0.00 0.00 3.06
867 886 1.341852 TCCTCGTTTTGGTCGTGATGA 59.658 47.619 0.00 0.00 0.00 2.92
868 887 1.726791 CCTCGTTTTGGTCGTGATGAG 59.273 52.381 0.00 0.00 0.00 2.90
869 888 1.726791 CTCGTTTTGGTCGTGATGAGG 59.273 52.381 0.00 0.00 0.00 3.86
871 890 1.234821 GTTTTGGTCGTGATGAGGCA 58.765 50.000 0.00 0.00 0.00 4.75
872 891 1.812571 GTTTTGGTCGTGATGAGGCAT 59.187 47.619 0.00 0.00 0.00 4.40
873 892 1.737838 TTTGGTCGTGATGAGGCATC 58.262 50.000 0.00 0.00 40.88 3.91
874 893 0.107703 TTGGTCGTGATGAGGCATCC 60.108 55.000 0.00 0.00 39.87 3.51
875 894 1.264045 TGGTCGTGATGAGGCATCCA 61.264 55.000 0.00 0.00 39.87 3.41
876 895 0.107703 GGTCGTGATGAGGCATCCAA 60.108 55.000 0.00 0.00 39.87 3.53
877 896 1.009829 GTCGTGATGAGGCATCCAAC 58.990 55.000 0.00 0.00 39.87 3.77
878 897 0.107703 TCGTGATGAGGCATCCAACC 60.108 55.000 0.00 0.00 39.87 3.77
879 898 1.431488 CGTGATGAGGCATCCAACCG 61.431 60.000 0.00 0.00 39.87 4.44
987 1006 4.379243 CTGACCCGGCTTGAGCGT 62.379 66.667 0.00 0.00 43.26 5.07
1237 1269 1.819229 CGCACTGCTGTATCCCTCT 59.181 57.895 0.00 0.00 0.00 3.69
1240 1272 0.387202 CACTGCTGTATCCCTCTCCG 59.613 60.000 0.00 0.00 0.00 4.63
1253 1562 1.238439 CTCTCCGCCTCTCTCTCATC 58.762 60.000 0.00 0.00 0.00 2.92
1260 1569 1.282570 CTCTCTCTCATCGCGCCTC 59.717 63.158 0.00 0.00 0.00 4.70
1266 1575 3.206211 CTCATCGCGCCTCCCTCTC 62.206 68.421 0.00 0.00 0.00 3.20
1267 1576 3.222855 CATCGCGCCTCCCTCTCT 61.223 66.667 0.00 0.00 0.00 3.10
1268 1577 3.222855 ATCGCGCCTCCCTCTCTG 61.223 66.667 0.00 0.00 0.00 3.35
1271 1580 4.527583 GCGCCTCCCTCTCTGCTG 62.528 72.222 0.00 0.00 0.00 4.41
1272 1581 4.527583 CGCCTCCCTCTCTGCTGC 62.528 72.222 0.00 0.00 0.00 5.25
1273 1582 3.082701 GCCTCCCTCTCTGCTGCT 61.083 66.667 0.00 0.00 0.00 4.24
1274 1583 2.668120 GCCTCCCTCTCTGCTGCTT 61.668 63.158 0.00 0.00 0.00 3.91
1275 1584 1.521616 CCTCCCTCTCTGCTGCTTC 59.478 63.158 0.00 0.00 0.00 3.86
1278 1587 2.588989 CCTCTCTGCTGCTTCCCC 59.411 66.667 0.00 0.00 0.00 4.81
1294 1604 1.294138 CCCCCGCACTCTTTTCGTA 59.706 57.895 0.00 0.00 0.00 3.43
1296 1606 1.677820 CCCCCGCACTCTTTTCGTATT 60.678 52.381 0.00 0.00 0.00 1.89
1333 1643 1.993369 GCCCCGGCGAAATTTGAGAG 61.993 60.000 9.30 0.00 0.00 3.20
1430 1760 2.741211 GCCGAACCCGTGAGTTCC 60.741 66.667 5.07 0.00 42.63 3.62
1433 1763 1.663739 CGAACCCGTGAGTTCCTCA 59.336 57.895 5.07 0.00 42.63 3.86
1442 1772 1.375326 GAGTTCCTCACACCACCCC 59.625 63.158 0.00 0.00 0.00 4.95
1445 1775 1.846124 TTCCTCACACCACCCCTCC 60.846 63.158 0.00 0.00 0.00 4.30
1446 1776 2.203998 CCTCACACCACCCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
1460 1790 4.520874 CACCCCTCCTTTTTCTTCTTCTTC 59.479 45.833 0.00 0.00 0.00 2.87
1462 1792 5.103473 ACCCCTCCTTTTTCTTCTTCTTCTT 60.103 40.000 0.00 0.00 0.00 2.52
1463 1793 5.475220 CCCCTCCTTTTTCTTCTTCTTCTTC 59.525 44.000 0.00 0.00 0.00 2.87
1466 1796 7.040755 CCCTCCTTTTTCTTCTTCTTCTTCTTC 60.041 40.741 0.00 0.00 0.00 2.87
1467 1797 7.307692 CCTCCTTTTTCTTCTTCTTCTTCTTCG 60.308 40.741 0.00 0.00 0.00 3.79
1468 1798 6.483640 TCCTTTTTCTTCTTCTTCTTCTTCGG 59.516 38.462 0.00 0.00 0.00 4.30
1469 1799 6.261158 CCTTTTTCTTCTTCTTCTTCTTCGGT 59.739 38.462 0.00 0.00 0.00 4.69
1470 1800 7.201741 CCTTTTTCTTCTTCTTCTTCTTCGGTT 60.202 37.037 0.00 0.00 0.00 4.44
1471 1801 7.625828 TTTTCTTCTTCTTCTTCTTCGGTTT 57.374 32.000 0.00 0.00 0.00 3.27
1472 1802 8.726870 TTTTCTTCTTCTTCTTCTTCGGTTTA 57.273 30.769 0.00 0.00 0.00 2.01
1473 1803 8.904099 TTTCTTCTTCTTCTTCTTCGGTTTAT 57.096 30.769 0.00 0.00 0.00 1.40
1474 1804 8.904099 TTCTTCTTCTTCTTCTTCGGTTTATT 57.096 30.769 0.00 0.00 0.00 1.40
1475 1805 8.904099 TCTTCTTCTTCTTCTTCGGTTTATTT 57.096 30.769 0.00 0.00 0.00 1.40
1476 1806 9.991906 TCTTCTTCTTCTTCTTCGGTTTATTTA 57.008 29.630 0.00 0.00 0.00 1.40
1530 1866 1.870055 AACAGCAGCCGCCATTCTTG 61.870 55.000 0.00 0.00 39.83 3.02
1532 1868 3.064324 GCAGCCGCCATTCTTGGT 61.064 61.111 0.00 0.00 45.57 3.67
1549 1888 0.534203 GGTCGGTCAACTGGCTTCAA 60.534 55.000 0.00 0.00 0.00 2.69
1552 1891 2.095718 GTCGGTCAACTGGCTTCAATTC 60.096 50.000 0.00 0.00 0.00 2.17
1554 1893 2.489329 CGGTCAACTGGCTTCAATTCAT 59.511 45.455 0.00 0.00 0.00 2.57
1556 1895 4.559300 CGGTCAACTGGCTTCAATTCATTT 60.559 41.667 0.00 0.00 0.00 2.32
1572 1911 2.738846 TCATTTCACTTCTTCGCTGCTC 59.261 45.455 0.00 0.00 0.00 4.26
1573 1912 1.512926 TTTCACTTCTTCGCTGCTCC 58.487 50.000 0.00 0.00 0.00 4.70
1576 1915 0.795085 CACTTCTTCGCTGCTCCTTG 59.205 55.000 0.00 0.00 0.00 3.61
1577 1916 0.394565 ACTTCTTCGCTGCTCCTTGT 59.605 50.000 0.00 0.00 0.00 3.16
1578 1917 1.202698 ACTTCTTCGCTGCTCCTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
1579 1918 1.876156 CTTCTTCGCTGCTCCTTGTTT 59.124 47.619 0.00 0.00 0.00 2.83
1580 1919 1.512926 TCTTCGCTGCTCCTTGTTTC 58.487 50.000 0.00 0.00 0.00 2.78
1581 1920 1.202639 TCTTCGCTGCTCCTTGTTTCA 60.203 47.619 0.00 0.00 0.00 2.69
1582 1921 1.808945 CTTCGCTGCTCCTTGTTTCAT 59.191 47.619 0.00 0.00 0.00 2.57
1583 1922 1.896220 TCGCTGCTCCTTGTTTCATT 58.104 45.000 0.00 0.00 0.00 2.57
1584 1923 1.806542 TCGCTGCTCCTTGTTTCATTC 59.193 47.619 0.00 0.00 0.00 2.67
1585 1924 1.536766 CGCTGCTCCTTGTTTCATTCA 59.463 47.619 0.00 0.00 0.00 2.57
1589 1928 4.624452 GCTGCTCCTTGTTTCATTCAATTC 59.376 41.667 0.00 0.00 0.00 2.17
1590 1929 5.775686 CTGCTCCTTGTTTCATTCAATTCA 58.224 37.500 0.00 0.00 0.00 2.57
1593 1932 6.869913 TGCTCCTTGTTTCATTCAATTCAATC 59.130 34.615 0.00 0.00 0.00 2.67
1622 1961 3.340814 AATGAGCACTTAGTCTGTGGG 57.659 47.619 0.00 0.00 36.08 4.61
1624 1963 2.884320 TGAGCACTTAGTCTGTGGGTA 58.116 47.619 0.00 0.00 36.08 3.69
1625 1964 2.826128 TGAGCACTTAGTCTGTGGGTAG 59.174 50.000 0.00 0.00 36.08 3.18
1626 1965 2.166664 GAGCACTTAGTCTGTGGGTAGG 59.833 54.545 0.00 0.00 36.08 3.18
1627 1966 1.207329 GCACTTAGTCTGTGGGTAGGG 59.793 57.143 0.00 0.00 36.08 3.53
1628 1967 1.207329 CACTTAGTCTGTGGGTAGGGC 59.793 57.143 0.00 0.00 0.00 5.19
1631 1970 2.263895 TAGTCTGTGGGTAGGGCAAT 57.736 50.000 0.00 0.00 0.00 3.56
1634 1973 1.004277 GTCTGTGGGTAGGGCAATTGA 59.996 52.381 10.34 0.00 0.00 2.57
1635 1974 1.004277 TCTGTGGGTAGGGCAATTGAC 59.996 52.381 10.34 6.06 0.00 3.18
1636 1975 1.004745 CTGTGGGTAGGGCAATTGACT 59.995 52.381 11.97 9.62 0.00 3.41
1638 1977 0.323360 TGGGTAGGGCAATTGACTGC 60.323 55.000 11.97 10.29 41.85 4.40
1640 1979 1.616994 GGGTAGGGCAATTGACTGCTT 60.617 52.381 11.97 0.00 42.25 3.91
1641 1980 1.745653 GGTAGGGCAATTGACTGCTTC 59.254 52.381 11.97 0.00 42.25 3.86
1642 1981 2.436417 GTAGGGCAATTGACTGCTTCA 58.564 47.619 11.97 0.00 42.25 3.02
1643 1982 2.226962 AGGGCAATTGACTGCTTCAT 57.773 45.000 11.97 0.00 42.25 2.57
1644 1983 1.822990 AGGGCAATTGACTGCTTCATG 59.177 47.619 11.97 0.00 42.25 3.07
1645 1984 1.134907 GGGCAATTGACTGCTTCATGG 60.135 52.381 11.97 0.00 42.25 3.66
1646 1985 1.636988 GCAATTGACTGCTTCATGGC 58.363 50.000 10.34 0.00 39.34 4.40
1647 1986 1.904144 CAATTGACTGCTTCATGGCG 58.096 50.000 0.00 0.00 32.84 5.69
1648 1987 1.200716 CAATTGACTGCTTCATGGCGT 59.799 47.619 0.00 0.00 32.84 5.68
1649 1988 0.806868 ATTGACTGCTTCATGGCGTG 59.193 50.000 0.00 0.00 32.84 5.34
1650 1989 1.236616 TTGACTGCTTCATGGCGTGG 61.237 55.000 6.90 0.00 32.84 4.94
1651 1990 1.375908 GACTGCTTCATGGCGTGGA 60.376 57.895 6.90 0.00 34.52 4.02
1652 1991 0.745845 GACTGCTTCATGGCGTGGAT 60.746 55.000 6.90 0.00 34.52 3.41
1653 1992 0.541392 ACTGCTTCATGGCGTGGATA 59.459 50.000 6.90 0.00 34.52 2.59
1654 1993 1.224075 CTGCTTCATGGCGTGGATAG 58.776 55.000 6.90 3.73 34.52 2.08
1655 1994 0.829990 TGCTTCATGGCGTGGATAGA 59.170 50.000 6.90 0.00 34.52 1.98
1656 1995 1.417517 TGCTTCATGGCGTGGATAGAT 59.582 47.619 6.90 0.00 34.52 1.98
1657 1996 2.632512 TGCTTCATGGCGTGGATAGATA 59.367 45.455 6.90 0.00 34.52 1.98
1658 1997 3.257393 GCTTCATGGCGTGGATAGATAG 58.743 50.000 6.90 0.00 0.00 2.08
1659 1998 3.056536 GCTTCATGGCGTGGATAGATAGA 60.057 47.826 6.90 0.00 0.00 1.98
1660 1999 4.382470 GCTTCATGGCGTGGATAGATAGAT 60.382 45.833 6.90 0.00 0.00 1.98
1661 2000 5.163509 GCTTCATGGCGTGGATAGATAGATA 60.164 44.000 6.90 0.00 0.00 1.98
1662 2001 6.462207 GCTTCATGGCGTGGATAGATAGATAT 60.462 42.308 6.90 0.00 0.00 1.63
1663 2002 7.255625 GCTTCATGGCGTGGATAGATAGATATA 60.256 40.741 6.90 0.00 0.00 0.86
1664 2003 8.712228 TTCATGGCGTGGATAGATAGATATAT 57.288 34.615 6.90 0.00 0.00 0.86
1665 2004 9.807921 TTCATGGCGTGGATAGATAGATATATA 57.192 33.333 6.90 0.00 0.00 0.86
1666 2005 9.232473 TCATGGCGTGGATAGATAGATATATAC 57.768 37.037 6.90 0.00 0.00 1.47
1669 2008 8.437575 TGGCGTGGATAGATAGATATATACAGA 58.562 37.037 0.00 0.00 26.24 3.41
1702 2042 8.840321 ACATAATCCTGTTGCAATCTTGTATAC 58.160 33.333 0.59 0.00 0.00 1.47
1741 2088 6.367374 AAAAACAGAGAGGGGAAACAAAAA 57.633 33.333 0.00 0.00 0.00 1.94
1779 2147 3.281727 AGCAGTCTGACTTCAAAACCA 57.718 42.857 7.77 0.00 0.00 3.67
1782 2150 3.242870 GCAGTCTGACTTCAAAACCAGTG 60.243 47.826 7.77 0.00 0.00 3.66
1787 2155 4.136796 CTGACTTCAAAACCAGTGATCCA 58.863 43.478 0.00 0.00 0.00 3.41
1810 2178 2.495669 ACAGTTTGGCCCCAAATATTCG 59.504 45.455 14.93 5.79 45.90 3.34
1814 2182 1.757682 TGGCCCCAAATATTCGTCAC 58.242 50.000 0.00 0.00 0.00 3.67
1817 2185 1.687563 CCCCAAATATTCGTCACCCC 58.312 55.000 0.00 0.00 0.00 4.95
1851 2222 4.335647 CTCAACTGCCTGCCCGGT 62.336 66.667 0.00 0.00 34.25 5.28
1852 2223 2.925706 TCAACTGCCTGCCCGGTA 60.926 61.111 0.00 0.00 34.25 4.02
1853 2224 2.033448 CAACTGCCTGCCCGGTAA 59.967 61.111 0.00 0.00 34.25 2.85
1854 2225 2.033602 AACTGCCTGCCCGGTAAC 59.966 61.111 0.00 0.00 34.25 2.50
1855 2226 2.526046 AACTGCCTGCCCGGTAACT 61.526 57.895 0.00 0.00 34.25 2.24
1856 2227 2.436646 CTGCCTGCCCGGTAACTG 60.437 66.667 0.00 0.00 34.25 3.16
1861 2232 1.741770 CTGCCCGGTAACTGCTGTC 60.742 63.158 0.00 0.00 33.61 3.51
1874 2245 1.478510 CTGCTGTCGACTATGGAAGGT 59.521 52.381 17.92 0.00 0.00 3.50
1880 2251 2.866762 GTCGACTATGGAAGGTTGATGC 59.133 50.000 8.70 0.00 0.00 3.91
1985 2362 3.214328 CTGGCCCATTAACACTATGTCC 58.786 50.000 0.00 0.00 0.00 4.02
1987 2364 3.118038 TGGCCCATTAACACTATGTCCTC 60.118 47.826 0.00 0.00 0.00 3.71
1992 2369 4.809426 CCATTAACACTATGTCCTCGGTTC 59.191 45.833 0.00 0.00 0.00 3.62
1999 2376 5.189145 ACACTATGTCCTCGGTTCCTTTATT 59.811 40.000 0.00 0.00 0.00 1.40
2000 2377 6.381994 ACACTATGTCCTCGGTTCCTTTATTA 59.618 38.462 0.00 0.00 0.00 0.98
2001 2378 6.700520 CACTATGTCCTCGGTTCCTTTATTAC 59.299 42.308 0.00 0.00 0.00 1.89
2002 2379 5.952347 ATGTCCTCGGTTCCTTTATTACT 57.048 39.130 0.00 0.00 0.00 2.24
2003 2380 7.781693 ACTATGTCCTCGGTTCCTTTATTACTA 59.218 37.037 0.00 0.00 0.00 1.82
2004 2381 6.855763 TGTCCTCGGTTCCTTTATTACTAA 57.144 37.500 0.00 0.00 0.00 2.24
2079 2456 3.087031 TGATCCGACCTTTCGTAGACTT 58.913 45.455 0.00 0.00 44.28 3.01
2104 2481 4.998672 ACAAATTCCATGGCTTTGTCATTG 59.001 37.500 26.74 16.54 38.38 2.82
2105 2482 4.895668 AATTCCATGGCTTTGTCATTGT 57.104 36.364 6.96 0.00 0.00 2.71
2106 2483 5.999205 AATTCCATGGCTTTGTCATTGTA 57.001 34.783 6.96 0.00 0.00 2.41
2107 2484 5.999205 ATTCCATGGCTTTGTCATTGTAA 57.001 34.783 6.96 0.00 0.00 2.41
2108 2485 5.999205 TTCCATGGCTTTGTCATTGTAAT 57.001 34.783 6.96 0.00 0.00 1.89
2109 2486 7.658525 ATTCCATGGCTTTGTCATTGTAATA 57.341 32.000 6.96 0.00 0.00 0.98
2110 2487 7.473735 TTCCATGGCTTTGTCATTGTAATAA 57.526 32.000 6.96 0.00 0.00 1.40
2111 2488 7.658525 TCCATGGCTTTGTCATTGTAATAAT 57.341 32.000 6.96 0.00 0.00 1.28
2112 2489 7.715657 TCCATGGCTTTGTCATTGTAATAATC 58.284 34.615 6.96 0.00 0.00 1.75
2113 2490 6.925165 CCATGGCTTTGTCATTGTAATAATCC 59.075 38.462 0.00 0.00 0.00 3.01
2114 2491 6.463995 TGGCTTTGTCATTGTAATAATCCC 57.536 37.500 0.00 0.00 0.00 3.85
2115 2492 5.954752 TGGCTTTGTCATTGTAATAATCCCA 59.045 36.000 0.00 0.00 0.00 4.37
2116 2493 6.610830 TGGCTTTGTCATTGTAATAATCCCAT 59.389 34.615 0.00 0.00 0.00 4.00
2117 2494 7.782168 TGGCTTTGTCATTGTAATAATCCCATA 59.218 33.333 0.00 0.00 0.00 2.74
2118 2495 8.806146 GGCTTTGTCATTGTAATAATCCCATAT 58.194 33.333 0.00 0.00 0.00 1.78
2135 2512 5.757850 CCATATTTGGGAGTAACAGCTTC 57.242 43.478 0.00 0.00 39.56 3.86
2136 2513 5.440610 CCATATTTGGGAGTAACAGCTTCT 58.559 41.667 0.00 0.00 39.56 2.85
2137 2514 6.591935 CCATATTTGGGAGTAACAGCTTCTA 58.408 40.000 0.00 0.00 39.56 2.10
2138 2515 7.227156 CCATATTTGGGAGTAACAGCTTCTAT 58.773 38.462 0.00 0.00 39.56 1.98
2139 2516 7.173907 CCATATTTGGGAGTAACAGCTTCTATG 59.826 40.741 0.00 0.00 39.56 2.23
2140 2517 4.487714 TTGGGAGTAACAGCTTCTATGG 57.512 45.455 0.00 0.00 0.00 2.74
2141 2518 3.450904 TGGGAGTAACAGCTTCTATGGT 58.549 45.455 0.00 0.00 0.00 3.55
2142 2519 3.844211 TGGGAGTAACAGCTTCTATGGTT 59.156 43.478 0.00 0.00 0.00 3.67
2143 2520 4.288626 TGGGAGTAACAGCTTCTATGGTTT 59.711 41.667 0.00 0.00 0.00 3.27
2144 2521 5.222048 TGGGAGTAACAGCTTCTATGGTTTT 60.222 40.000 0.00 0.00 0.00 2.43
2145 2522 5.354513 GGGAGTAACAGCTTCTATGGTTTTC 59.645 44.000 0.00 0.00 0.00 2.29
2146 2523 6.174049 GGAGTAACAGCTTCTATGGTTTTCT 58.826 40.000 0.00 0.00 0.00 2.52
2147 2524 6.655425 GGAGTAACAGCTTCTATGGTTTTCTT 59.345 38.462 0.00 0.00 0.00 2.52
2148 2525 7.822822 GGAGTAACAGCTTCTATGGTTTTCTTA 59.177 37.037 0.00 0.00 0.00 2.10
2149 2526 9.384764 GAGTAACAGCTTCTATGGTTTTCTTAT 57.615 33.333 0.00 0.00 0.00 1.73
2162 2539 8.635765 ATGGTTTTCTTATCTTTCTGCAGTTA 57.364 30.769 14.67 0.00 0.00 2.24
2171 2548 9.979578 CTTATCTTTCTGCAGTTAGAGTATGAT 57.020 33.333 14.67 8.13 0.00 2.45
2178 2555 5.193663 GCAGTTAGAGTATGATCTGCAGA 57.806 43.478 20.79 20.79 44.80 4.26
2179 2556 5.221880 GCAGTTAGAGTATGATCTGCAGAG 58.778 45.833 22.96 4.05 44.80 3.35
2214 2591 4.141088 ACATCATGATCCAGGGCTACATTT 60.141 41.667 4.86 0.00 0.00 2.32
2215 2592 3.824133 TCATGATCCAGGGCTACATTTG 58.176 45.455 0.00 0.00 0.00 2.32
2216 2593 3.202818 TCATGATCCAGGGCTACATTTGT 59.797 43.478 0.00 0.00 0.00 2.83
2225 2602 1.438651 GCTACATTTGTGGTCTGCGA 58.561 50.000 0.00 0.00 0.00 5.10
2255 2632 6.593382 AGTTTGAGATGAAGCTATGTGAGAAC 59.407 38.462 0.00 0.00 0.00 3.01
2315 2692 3.323136 CTTTCCGAGATCGCCGCG 61.323 66.667 6.39 6.39 38.18 6.46
2330 2707 2.100603 GCGCTACGAGACGAGCTT 59.899 61.111 0.00 0.00 36.50 3.74
2334 2711 1.015868 GCTACGAGACGAGCTTACCT 58.984 55.000 0.00 0.00 35.73 3.08
2336 2713 2.008329 CTACGAGACGAGCTTACCTGT 58.992 52.381 0.00 0.00 0.00 4.00
2372 2749 0.528017 CAGCTTCAGAGTCCAGCGTA 59.472 55.000 0.00 0.00 38.66 4.42
2417 2794 1.917872 AAGCAGAGGAGACGAACTCT 58.082 50.000 12.23 5.93 44.50 3.24
2421 2798 1.742831 CAGAGGAGACGAACTCTCTGG 59.257 57.143 20.46 11.70 44.63 3.86
2492 2869 2.496817 GGCGAAGAGATCACGGCT 59.503 61.111 16.04 0.00 46.12 5.52
2496 2873 1.061276 GCGAAGAGATCACGGCTTTTC 59.939 52.381 0.00 0.00 0.00 2.29
2517 2894 3.326006 TCTGAAGTCTGAATGGCTCAAGT 59.674 43.478 0.00 0.00 32.17 3.16
2520 2897 3.777106 AGTCTGAATGGCTCAAGTTGA 57.223 42.857 5.25 5.25 32.17 3.18
2540 2917 0.798771 GAAGGCAGCACGAGTACGAG 60.799 60.000 0.00 0.00 42.66 4.18
2600 2977 2.624636 CATTTTGCAAAGGATGGAGCC 58.375 47.619 12.41 0.00 0.00 4.70
2604 2981 3.056313 GCAAAGGATGGAGCCGTGC 62.056 63.158 0.00 0.00 36.92 5.34
2634 3011 3.778265 AGGAAAGAGAGAGAGCTTGAGT 58.222 45.455 0.00 0.00 0.00 3.41
2713 3090 1.065854 AGAGGGCTCTGGTTTTGATCG 60.066 52.381 0.00 0.00 38.75 3.69
2777 3154 2.868662 TCTCTGCTCGACGAAAATGAG 58.131 47.619 0.00 4.94 0.00 2.90
2846 3223 0.642291 CTGCACAAGTAGTCGATGCG 59.358 55.000 0.00 0.00 39.18 4.73
2851 3228 0.917259 CAAGTAGTCGATGCGCAGAC 59.083 55.000 18.32 18.78 37.63 3.51
2870 3247 2.432456 GATGTCGCACGCCACTCA 60.432 61.111 0.00 0.00 0.00 3.41
2901 3278 4.754114 AGTCAAAACTCAGTGATGAGCTTC 59.246 41.667 5.19 0.00 39.42 3.86
3030 3407 2.289320 TGCTTCCTCAGAGAGTTGCTTC 60.289 50.000 0.00 0.00 0.00 3.86
3095 3472 7.295952 ACGTAAGCTCAAGTATGAAAATGAG 57.704 36.000 0.00 0.00 41.69 2.90
3110 3487 7.255491 TGAAAATGAGCAGCTTGTATCTATG 57.745 36.000 0.00 0.00 0.00 2.23
3233 3610 0.674534 AGTTCAAAGGCGAGTCGAGT 59.325 50.000 18.61 0.00 0.00 4.18
3236 3613 0.671796 TCAAAGGCGAGTCGAGTTCA 59.328 50.000 18.61 0.00 0.00 3.18
3375 3752 1.215014 TGCTTCACTTGACGCGACTG 61.215 55.000 15.93 6.87 41.56 3.51
3396 3773 3.009033 TGTCCGGGAAATGAAGAGAACAT 59.991 43.478 0.00 0.00 0.00 2.71
3400 3777 4.256920 CGGGAAATGAAGAGAACATCAGT 58.743 43.478 0.00 0.00 0.00 3.41
3404 3781 2.084610 TGAAGAGAACATCAGTGCCG 57.915 50.000 0.00 0.00 0.00 5.69
3405 3782 1.344438 TGAAGAGAACATCAGTGCCGT 59.656 47.619 0.00 0.00 0.00 5.68
3406 3783 1.728971 GAAGAGAACATCAGTGCCGTG 59.271 52.381 0.00 0.00 0.00 4.94
3474 3851 3.191371 CACCCTTGTTAGCATGGAGAAAC 59.809 47.826 12.40 0.00 41.07 2.78
3476 3853 4.288626 ACCCTTGTTAGCATGGAGAAACTA 59.711 41.667 12.40 0.00 41.07 2.24
3546 3923 8.028354 TGAAACAAAATGATATAAGGTGCACAG 58.972 33.333 20.43 0.00 0.00 3.66
3908 4285 8.364142 AGAGTATGCAGACCTATTCTAAACATC 58.636 37.037 8.08 0.00 31.12 3.06
3929 4314 7.436118 ACATCTGCATGTTACTGTTCAAAAAT 58.564 30.769 0.00 0.00 40.66 1.82
4028 4429 5.581085 GTGCAGGTTGACTAGAATAATTCGT 59.419 40.000 0.00 0.00 34.02 3.85
4171 4572 2.160104 GCGTCGCTTCATTTTGCTTTTC 60.160 45.455 10.68 0.00 0.00 2.29
4224 4625 9.631639 GTTCAACAAAATTCCAAGTAATTTTCG 57.368 29.630 4.72 4.48 43.67 3.46
4242 4643 7.611213 ATTTTCGAAGTTGGGACTTATGTAG 57.389 36.000 0.00 0.00 45.88 2.74
4408 4816 9.358872 GACAAGATGGAGTGAATTTTTAAATCC 57.641 33.333 0.00 0.00 0.00 3.01
4444 4856 9.983024 TCCTCCATTTGTTAACTATCCATTTTA 57.017 29.630 7.22 0.00 0.00 1.52
4672 5084 4.843220 ATATGGACATGCAGCTTTTAGC 57.157 40.909 0.00 0.00 42.84 3.09
4692 5104 4.579869 AGCGTGAAGGTTCTACAATTCAT 58.420 39.130 0.00 0.00 34.45 2.57
4704 5116 7.638683 GGTTCTACAATTCATAATCGTTTTCCG 59.361 37.037 0.00 0.00 38.13 4.30
4711 5123 5.811399 TCATAATCGTTTTCCGCAATTCT 57.189 34.783 0.00 0.00 36.19 2.40
4804 5216 8.032451 ACACTTTGTTAAAACATTAACAGCACT 58.968 29.630 12.33 0.00 44.97 4.40
4805 5217 8.868916 CACTTTGTTAAAACATTAACAGCACTT 58.131 29.630 12.33 0.00 44.97 3.16
4806 5218 8.868916 ACTTTGTTAAAACATTAACAGCACTTG 58.131 29.630 12.33 5.63 44.97 3.16
4807 5219 8.988064 TTTGTTAAAACATTAACAGCACTTGA 57.012 26.923 12.33 0.00 44.97 3.02
4808 5220 8.988064 TTGTTAAAACATTAACAGCACTTGAA 57.012 26.923 12.33 0.00 44.97 2.69
4809 5221 9.593134 TTGTTAAAACATTAACAGCACTTGAAT 57.407 25.926 12.33 0.00 44.97 2.57
4812 5224 7.851822 AAAACATTAACAGCACTTGAATACG 57.148 32.000 0.00 0.00 0.00 3.06
4813 5225 6.554334 AACATTAACAGCACTTGAATACGT 57.446 33.333 0.00 0.00 0.00 3.57
4866 5285 2.839486 TTGCAGTGACTTACAGGAGG 57.161 50.000 0.00 0.00 0.00 4.30
4870 5292 3.135712 TGCAGTGACTTACAGGAGGAAAA 59.864 43.478 0.00 0.00 0.00 2.29
4871 5293 3.498777 GCAGTGACTTACAGGAGGAAAAC 59.501 47.826 0.00 0.00 0.00 2.43
4884 5306 7.514721 ACAGGAGGAAAACAAGATGTTAACTA 58.485 34.615 7.22 0.00 40.14 2.24
4946 5368 0.396435 TTGCTAGTGTGACCAGGGTG 59.604 55.000 0.00 0.00 0.00 4.61
4962 5387 4.195416 CAGGGTGATCTCTTTTCTTAGGC 58.805 47.826 0.00 0.00 0.00 3.93
5005 5430 5.050634 GTGTGCAGTTTGTAGTTGTCGATAA 60.051 40.000 0.00 0.00 0.00 1.75
5136 5568 5.524281 GCTTGTTATAGTCCCAGCTTTACTC 59.476 44.000 0.00 0.00 0.00 2.59
5144 5583 3.006967 GTCCCAGCTTTACTCTCAGTGAA 59.993 47.826 0.00 0.00 0.00 3.18
5191 5630 3.918258 TCGTATTGACTGCGTTTATGC 57.082 42.857 0.00 0.00 34.27 3.14
5215 5660 6.147164 GCATCTGTAAGTTGTAACTAGTGCAA 59.853 38.462 0.00 2.40 38.57 4.08
5220 5665 9.382244 CTGTAAGTTGTAACTAGTGCAATTTTC 57.618 33.333 18.94 15.89 38.57 2.29
5261 5708 5.005971 CAGTTTTCTGCAGTCCATTTTTGTG 59.994 40.000 14.67 0.00 41.24 3.33
5265 5712 3.953612 TCTGCAGTCCATTTTTGTGAACT 59.046 39.130 14.67 0.00 0.00 3.01
5284 5731 6.803807 GTGAACTGGAAAGAAGTATGAATTGC 59.196 38.462 0.00 0.00 0.00 3.56
5286 5733 6.506500 ACTGGAAAGAAGTATGAATTGCAG 57.493 37.500 4.17 4.17 42.76 4.41
5317 5764 4.415596 ACCTGTTAATGGAAGCATTTGGA 58.584 39.130 4.73 0.00 0.00 3.53
5392 5839 6.839124 TCATGGCATGAATATAAATCCACC 57.161 37.500 27.03 0.00 36.11 4.61
5861 6316 3.589988 CCAAGTACTGCTAGTGTCTTGG 58.410 50.000 22.93 22.93 45.32 3.61
5909 6367 2.527671 CGGCGCCGATGAATATGAA 58.472 52.632 44.86 0.00 42.83 2.57
5910 6368 1.078709 CGGCGCCGATGAATATGAAT 58.921 50.000 44.86 0.00 42.83 2.57
5911 6369 2.267426 CGGCGCCGATGAATATGAATA 58.733 47.619 44.86 0.00 42.83 1.75
5912 6370 2.866156 CGGCGCCGATGAATATGAATAT 59.134 45.455 44.86 0.00 42.83 1.28
5913 6371 3.302675 CGGCGCCGATGAATATGAATATG 60.303 47.826 44.86 7.40 42.83 1.78
5914 6372 3.871006 GGCGCCGATGAATATGAATATGA 59.129 43.478 12.58 0.00 0.00 2.15
5924 6382 9.393512 GATGAATATGAATATGAAGAGGAAGGG 57.606 37.037 0.00 0.00 0.00 3.95
6084 6542 4.717280 AGATTGGTACTCCCTCTGTAAAGG 59.283 45.833 0.00 0.00 36.08 3.11
6109 6567 9.909644 GGAATATAAGAGCGTTTAGATCACTAA 57.090 33.333 0.00 0.00 37.82 2.24
6233 6691 8.865420 TGGTAGTACCATATCAGATCTAAGAC 57.135 38.462 18.45 0.00 44.79 3.01
6280 6738 2.238646 TGGATCAGTACACCCAATGGTC 59.761 50.000 0.00 0.00 45.57 4.02
6281 6739 2.238646 GGATCAGTACACCCAATGGTCA 59.761 50.000 0.00 0.00 45.57 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.352156 CGTACCTCAGCAGGAAACGC 61.352 60.000 0.00 0.00 43.65 4.84
200 202 6.380190 AGGACGCGTCAGTATTAATCTAATC 58.620 40.000 37.26 15.97 0.00 1.75
201 203 6.328641 AGGACGCGTCAGTATTAATCTAAT 57.671 37.500 37.26 0.00 0.00 1.73
202 204 5.762825 AGGACGCGTCAGTATTAATCTAA 57.237 39.130 37.26 0.00 0.00 2.10
203 205 5.762825 AAGGACGCGTCAGTATTAATCTA 57.237 39.130 37.26 0.00 0.00 1.98
204 206 4.650754 AAGGACGCGTCAGTATTAATCT 57.349 40.909 37.26 20.31 0.00 2.40
695 698 1.673337 GACTGGCAGCATCAGCACA 60.673 57.895 15.89 0.00 45.49 4.57
746 752 3.010584 ACTTGCCCTTTGATGTGGACTAT 59.989 43.478 0.00 0.00 0.00 2.12
752 763 1.542915 CCTCACTTGCCCTTTGATGTG 59.457 52.381 0.00 0.00 0.00 3.21
764 775 0.716108 GATTCGCGACACCTCACTTG 59.284 55.000 9.15 0.00 0.00 3.16
766 777 0.171455 GAGATTCGCGACACCTCACT 59.829 55.000 9.15 0.12 0.00 3.41
845 864 1.574134 TCACGACCAAAACGAGGAAC 58.426 50.000 0.00 0.00 34.70 3.62
846 865 2.139917 CATCACGACCAAAACGAGGAA 58.860 47.619 0.00 0.00 34.70 3.36
859 878 0.107703 GGTTGGATGCCTCATCACGA 60.108 55.000 8.80 0.00 42.13 4.35
871 890 3.782443 GTCGGAGGGCGGTTGGAT 61.782 66.667 0.00 0.00 0.00 3.41
873 892 3.835790 TTTGTCGGAGGGCGGTTGG 62.836 63.158 0.00 0.00 0.00 3.77
874 893 2.281208 TTTGTCGGAGGGCGGTTG 60.281 61.111 0.00 0.00 0.00 3.77
875 894 2.281276 GTTTGTCGGAGGGCGGTT 60.281 61.111 0.00 0.00 0.00 4.44
876 895 4.324991 GGTTTGTCGGAGGGCGGT 62.325 66.667 0.00 0.00 0.00 5.68
877 896 4.323477 TGGTTTGTCGGAGGGCGG 62.323 66.667 0.00 0.00 0.00 6.13
878 897 3.047877 GTGGTTTGTCGGAGGGCG 61.048 66.667 0.00 0.00 0.00 6.13
879 898 2.671963 GGTGGTTTGTCGGAGGGC 60.672 66.667 0.00 0.00 0.00 5.19
957 976 4.459089 GTCAGCCGGTCAGGGAGC 62.459 72.222 1.90 0.00 41.48 4.70
1229 1261 0.402504 GAGAGAGGCGGAGAGGGATA 59.597 60.000 0.00 0.00 0.00 2.59
1237 1269 2.190170 GCGATGAGAGAGAGGCGGA 61.190 63.158 0.00 0.00 0.00 5.54
1240 1272 2.354539 GCGCGATGAGAGAGAGGC 60.355 66.667 12.10 0.00 0.00 4.70
1260 1569 2.588989 GGGAAGCAGCAGAGAGGG 59.411 66.667 0.00 0.00 0.00 4.30
1278 1587 1.396996 CCAATACGAAAAGAGTGCGGG 59.603 52.381 0.00 0.00 0.00 6.13
1430 1760 0.478507 AAAAGGAGGGGTGGTGTGAG 59.521 55.000 0.00 0.00 0.00 3.51
1433 1763 1.231963 AGAAAAAGGAGGGGTGGTGT 58.768 50.000 0.00 0.00 0.00 4.16
1435 1765 2.144450 AGAAGAAAAAGGAGGGGTGGT 58.856 47.619 0.00 0.00 0.00 4.16
1438 1768 4.417183 AGAAGAAGAAGAAAAAGGAGGGGT 59.583 41.667 0.00 0.00 0.00 4.95
1439 1769 4.991776 AGAAGAAGAAGAAAAAGGAGGGG 58.008 43.478 0.00 0.00 0.00 4.79
1442 1772 7.307692 CCGAAGAAGAAGAAGAAGAAAAAGGAG 60.308 40.741 0.00 0.00 0.00 3.69
1445 1775 7.252965 ACCGAAGAAGAAGAAGAAGAAAAAG 57.747 36.000 0.00 0.00 0.00 2.27
1446 1776 7.625828 AACCGAAGAAGAAGAAGAAGAAAAA 57.374 32.000 0.00 0.00 0.00 1.94
1474 1804 8.977412 GGGAGAAACATTGAAGGGAATAAATAA 58.023 33.333 0.00 0.00 0.00 1.40
1475 1805 7.563556 GGGGAGAAACATTGAAGGGAATAAATA 59.436 37.037 0.00 0.00 0.00 1.40
1476 1806 6.384015 GGGGAGAAACATTGAAGGGAATAAAT 59.616 38.462 0.00 0.00 0.00 1.40
1477 1807 5.719563 GGGGAGAAACATTGAAGGGAATAAA 59.280 40.000 0.00 0.00 0.00 1.40
1492 1822 0.981943 TTCTCGGAAGGGGGAGAAAC 59.018 55.000 1.29 0.00 44.04 2.78
1530 1866 0.534203 TTGAAGCCAGTTGACCGACC 60.534 55.000 0.00 0.00 0.00 4.79
1532 1868 2.151202 GAATTGAAGCCAGTTGACCGA 58.849 47.619 0.00 0.00 0.00 4.69
1549 1888 3.755378 AGCAGCGAAGAAGTGAAATGAAT 59.245 39.130 0.00 0.00 0.00 2.57
1552 1891 2.159599 GGAGCAGCGAAGAAGTGAAATG 60.160 50.000 0.00 0.00 0.00 2.32
1554 1893 1.070758 AGGAGCAGCGAAGAAGTGAAA 59.929 47.619 0.00 0.00 0.00 2.69
1556 1895 0.681733 AAGGAGCAGCGAAGAAGTGA 59.318 50.000 0.00 0.00 0.00 3.41
1601 1940 3.073062 ACCCACAGACTAAGTGCTCATTT 59.927 43.478 0.00 0.00 35.69 2.32
1604 1943 1.717032 ACCCACAGACTAAGTGCTCA 58.283 50.000 0.00 0.00 35.69 4.26
1611 1950 2.032965 TTGCCCTACCCACAGACTAA 57.967 50.000 0.00 0.00 0.00 2.24
1615 1954 1.004277 GTCAATTGCCCTACCCACAGA 59.996 52.381 0.00 0.00 0.00 3.41
1619 1958 0.323360 GCAGTCAATTGCCCTACCCA 60.323 55.000 0.00 0.00 38.13 4.51
1622 1961 2.436417 TGAAGCAGTCAATTGCCCTAC 58.564 47.619 0.00 0.00 45.18 3.18
1624 1963 1.822990 CATGAAGCAGTCAATTGCCCT 59.177 47.619 0.00 0.00 45.18 5.19
1625 1964 1.134907 CCATGAAGCAGTCAATTGCCC 60.135 52.381 0.00 0.00 45.18 5.36
1626 1965 1.738030 GCCATGAAGCAGTCAATTGCC 60.738 52.381 0.00 0.00 45.18 4.52
1627 1966 1.636988 GCCATGAAGCAGTCAATTGC 58.363 50.000 0.00 0.00 40.50 3.56
1628 1967 1.200716 ACGCCATGAAGCAGTCAATTG 59.799 47.619 0.00 0.00 40.50 2.32
1631 1970 1.236616 CCACGCCATGAAGCAGTCAA 61.237 55.000 0.00 0.00 40.50 3.18
1634 1973 0.541392 TATCCACGCCATGAAGCAGT 59.459 50.000 0.00 0.00 0.00 4.40
1635 1974 1.202568 TCTATCCACGCCATGAAGCAG 60.203 52.381 0.00 0.00 0.00 4.24
1636 1975 0.829990 TCTATCCACGCCATGAAGCA 59.170 50.000 0.00 0.00 0.00 3.91
1638 1977 4.790765 TCTATCTATCCACGCCATGAAG 57.209 45.455 0.00 0.00 0.00 3.02
1640 1979 9.232473 GTATATATCTATCTATCCACGCCATGA 57.768 37.037 0.00 0.00 0.00 3.07
1641 1980 9.014297 TGTATATATCTATCTATCCACGCCATG 57.986 37.037 0.00 0.00 0.00 3.66
1642 1981 9.237187 CTGTATATATCTATCTATCCACGCCAT 57.763 37.037 0.00 0.00 0.00 4.40
1643 1982 8.437575 TCTGTATATATCTATCTATCCACGCCA 58.562 37.037 0.00 0.00 0.00 5.69
1644 1983 8.723311 GTCTGTATATATCTATCTATCCACGCC 58.277 40.741 0.00 0.00 0.00 5.68
1645 1984 9.496873 AGTCTGTATATATCTATCTATCCACGC 57.503 37.037 0.00 0.00 0.00 5.34
1659 1998 9.775539 AGGATTATGTGTGGAGTCTGTATATAT 57.224 33.333 0.00 0.00 0.00 0.86
1660 1999 9.025041 CAGGATTATGTGTGGAGTCTGTATATA 57.975 37.037 0.00 0.00 0.00 0.86
1661 2000 7.510685 ACAGGATTATGTGTGGAGTCTGTATAT 59.489 37.037 0.00 0.00 32.13 0.86
1662 2001 6.839134 ACAGGATTATGTGTGGAGTCTGTATA 59.161 38.462 0.00 0.00 32.13 1.47
1663 2002 5.663106 ACAGGATTATGTGTGGAGTCTGTAT 59.337 40.000 0.00 0.00 32.13 2.29
1664 2003 5.023452 ACAGGATTATGTGTGGAGTCTGTA 58.977 41.667 0.00 0.00 32.13 2.74
1665 2004 3.840666 ACAGGATTATGTGTGGAGTCTGT 59.159 43.478 0.00 0.00 30.46 3.41
1666 2005 4.478206 ACAGGATTATGTGTGGAGTCTG 57.522 45.455 0.00 0.00 30.46 3.51
1669 2008 3.244875 TGCAACAGGATTATGTGTGGAGT 60.245 43.478 0.00 0.00 32.52 3.85
1674 2013 5.477984 ACAAGATTGCAACAGGATTATGTGT 59.522 36.000 0.00 0.00 32.52 3.72
1677 2016 9.060347 AGTATACAAGATTGCAACAGGATTATG 57.940 33.333 0.00 0.00 0.00 1.90
1684 2023 7.148639 ACACGTTAGTATACAAGATTGCAACAG 60.149 37.037 0.00 0.00 0.00 3.16
1741 2088 4.202388 ACTGCTTGGATTGCTGGAATTTTT 60.202 37.500 0.00 0.00 34.40 1.94
1742 2089 3.325716 ACTGCTTGGATTGCTGGAATTTT 59.674 39.130 0.00 0.00 34.40 1.82
1745 2092 2.097825 GACTGCTTGGATTGCTGGAAT 58.902 47.619 0.00 0.00 34.40 3.01
1746 2093 1.074405 AGACTGCTTGGATTGCTGGAA 59.926 47.619 0.00 0.00 34.40 3.53
1747 2094 0.694771 AGACTGCTTGGATTGCTGGA 59.305 50.000 0.00 0.00 34.40 3.86
1751 2098 1.818642 AGTCAGACTGCTTGGATTGC 58.181 50.000 0.91 0.00 0.00 3.56
1752 2099 3.405831 TGAAGTCAGACTGCTTGGATTG 58.594 45.455 10.16 0.00 0.00 2.67
1753 2100 3.777106 TGAAGTCAGACTGCTTGGATT 57.223 42.857 10.16 0.00 0.00 3.01
1755 2102 3.558931 TTTGAAGTCAGACTGCTTGGA 57.441 42.857 10.16 3.45 0.00 3.53
1756 2103 3.243201 GGTTTTGAAGTCAGACTGCTTGG 60.243 47.826 10.16 0.00 0.00 3.61
1757 2104 3.378112 TGGTTTTGAAGTCAGACTGCTTG 59.622 43.478 10.16 0.00 0.00 4.01
1787 2155 4.562552 CGAATATTTGGGGCCAAACTGTTT 60.563 41.667 4.39 0.00 46.80 2.83
1799 2167 2.425668 GTTGGGGTGACGAATATTTGGG 59.574 50.000 7.61 0.00 0.00 4.12
1810 2178 1.600916 GAGGCTGTGTTGGGGTGAC 60.601 63.158 0.00 0.00 0.00 3.67
1814 2182 2.674380 GCAGAGGCTGTGTTGGGG 60.674 66.667 13.65 0.00 36.96 4.96
1851 2222 3.130516 CCTTCCATAGTCGACAGCAGTTA 59.869 47.826 19.50 0.00 0.00 2.24
1852 2223 2.093973 CCTTCCATAGTCGACAGCAGTT 60.094 50.000 19.50 0.00 0.00 3.16
1853 2224 1.478510 CCTTCCATAGTCGACAGCAGT 59.521 52.381 19.50 0.00 0.00 4.40
1854 2225 1.478510 ACCTTCCATAGTCGACAGCAG 59.521 52.381 19.50 3.78 0.00 4.24
1855 2226 1.557099 ACCTTCCATAGTCGACAGCA 58.443 50.000 19.50 2.36 0.00 4.41
1856 2227 2.094182 TCAACCTTCCATAGTCGACAGC 60.094 50.000 19.50 0.00 0.00 4.40
1861 2232 1.860950 CGCATCAACCTTCCATAGTCG 59.139 52.381 0.00 0.00 0.00 4.18
1917 2288 5.973565 GCAAACAAATCACAGATATAGTGGC 59.026 40.000 7.66 0.00 37.58 5.01
1972 2349 4.091549 AGGAACCGAGGACATAGTGTTAA 58.908 43.478 0.00 0.00 0.00 2.01
2079 2456 5.798125 TGACAAAGCCATGGAATTTGTTA 57.202 34.783 32.27 28.36 44.76 2.41
2114 2491 7.173907 CCATAGAAGCTGTTACTCCCAAATATG 59.826 40.741 0.00 0.00 0.00 1.78
2115 2492 7.147302 ACCATAGAAGCTGTTACTCCCAAATAT 60.147 37.037 0.00 0.00 0.00 1.28
2116 2493 6.157994 ACCATAGAAGCTGTTACTCCCAAATA 59.842 38.462 0.00 0.00 0.00 1.40
2117 2494 5.044846 ACCATAGAAGCTGTTACTCCCAAAT 60.045 40.000 0.00 0.00 0.00 2.32
2118 2495 4.288626 ACCATAGAAGCTGTTACTCCCAAA 59.711 41.667 0.00 0.00 0.00 3.28
2119 2496 3.844211 ACCATAGAAGCTGTTACTCCCAA 59.156 43.478 0.00 0.00 0.00 4.12
2120 2497 3.450904 ACCATAGAAGCTGTTACTCCCA 58.549 45.455 0.00 0.00 0.00 4.37
2121 2498 4.489306 AACCATAGAAGCTGTTACTCCC 57.511 45.455 0.00 0.00 0.00 4.30
2122 2499 6.174049 AGAAAACCATAGAAGCTGTTACTCC 58.826 40.000 0.00 0.00 0.00 3.85
2123 2500 7.674471 AAGAAAACCATAGAAGCTGTTACTC 57.326 36.000 0.00 0.00 0.00 2.59
2124 2501 9.384764 GATAAGAAAACCATAGAAGCTGTTACT 57.615 33.333 0.00 0.00 0.00 2.24
2125 2502 9.384764 AGATAAGAAAACCATAGAAGCTGTTAC 57.615 33.333 0.00 0.00 0.00 2.50
2126 2503 9.959721 AAGATAAGAAAACCATAGAAGCTGTTA 57.040 29.630 0.00 0.00 0.00 2.41
2127 2504 8.870075 AAGATAAGAAAACCATAGAAGCTGTT 57.130 30.769 0.00 0.00 0.00 3.16
2128 2505 8.870075 AAAGATAAGAAAACCATAGAAGCTGT 57.130 30.769 0.00 0.00 0.00 4.40
2129 2506 9.171877 AGAAAGATAAGAAAACCATAGAAGCTG 57.828 33.333 0.00 0.00 0.00 4.24
2130 2507 9.171877 CAGAAAGATAAGAAAACCATAGAAGCT 57.828 33.333 0.00 0.00 0.00 3.74
2131 2508 7.912773 GCAGAAAGATAAGAAAACCATAGAAGC 59.087 37.037 0.00 0.00 0.00 3.86
2132 2509 8.950210 TGCAGAAAGATAAGAAAACCATAGAAG 58.050 33.333 0.00 0.00 0.00 2.85
2133 2510 8.862325 TGCAGAAAGATAAGAAAACCATAGAA 57.138 30.769 0.00 0.00 0.00 2.10
2134 2511 8.103305 ACTGCAGAAAGATAAGAAAACCATAGA 58.897 33.333 23.35 0.00 0.00 1.98
2135 2512 8.273780 ACTGCAGAAAGATAAGAAAACCATAG 57.726 34.615 23.35 0.00 0.00 2.23
2136 2513 8.635765 AACTGCAGAAAGATAAGAAAACCATA 57.364 30.769 23.35 0.00 0.00 2.74
2137 2514 7.530426 AACTGCAGAAAGATAAGAAAACCAT 57.470 32.000 23.35 0.00 0.00 3.55
2138 2515 6.959639 AACTGCAGAAAGATAAGAAAACCA 57.040 33.333 23.35 0.00 0.00 3.67
2139 2516 8.324163 TCTAACTGCAGAAAGATAAGAAAACC 57.676 34.615 23.35 0.00 0.00 3.27
2140 2517 8.994170 ACTCTAACTGCAGAAAGATAAGAAAAC 58.006 33.333 23.35 0.00 0.00 2.43
2143 2520 9.809096 CATACTCTAACTGCAGAAAGATAAGAA 57.191 33.333 23.35 6.58 0.00 2.52
2144 2521 9.190317 TCATACTCTAACTGCAGAAAGATAAGA 57.810 33.333 23.35 13.42 0.00 2.10
2145 2522 9.979578 ATCATACTCTAACTGCAGAAAGATAAG 57.020 33.333 23.35 12.32 0.00 1.73
2146 2523 9.973450 GATCATACTCTAACTGCAGAAAGATAA 57.027 33.333 23.35 12.51 0.00 1.75
2147 2524 9.360901 AGATCATACTCTAACTGCAGAAAGATA 57.639 33.333 23.35 14.79 0.00 1.98
2148 2525 8.143193 CAGATCATACTCTAACTGCAGAAAGAT 58.857 37.037 23.35 13.35 0.00 2.40
2149 2526 7.487484 CAGATCATACTCTAACTGCAGAAAGA 58.513 38.462 23.35 19.78 0.00 2.52
2162 2539 3.822735 GCTCTCTCTGCAGATCATACTCT 59.177 47.826 18.63 0.00 0.00 3.24
2178 2555 1.955778 CATGATGTCCGAGAGCTCTCT 59.044 52.381 34.69 20.14 43.78 3.10
2179 2556 1.952990 TCATGATGTCCGAGAGCTCTC 59.047 52.381 30.36 30.36 39.55 3.20
2189 2566 0.769873 AGCCCTGGATCATGATGTCC 59.230 55.000 14.30 10.81 35.02 4.02
2225 2602 3.951775 AGCTTCATCTCAAACTCTCGT 57.048 42.857 0.00 0.00 0.00 4.18
2234 2611 4.467438 TGGTTCTCACATAGCTTCATCTCA 59.533 41.667 0.00 0.00 0.00 3.27
2255 2632 2.481568 CAGTGTGCTGATACAGTTGTGG 59.518 50.000 0.00 0.00 45.28 4.17
2290 2667 2.007608 CGATCTCGGAAAGGTTTTCCC 58.992 52.381 13.42 0.81 36.78 3.97
2315 2692 1.015868 AGGTAAGCTCGTCTCGTAGC 58.984 55.000 0.00 0.00 39.08 3.58
2330 2707 1.341679 ACAGCGGTCAGGATACAGGTA 60.342 52.381 0.00 0.00 41.41 3.08
2334 2711 1.897423 CCACAGCGGTCAGGATACA 59.103 57.895 0.00 0.00 41.41 2.29
2336 2713 1.960040 CTGCCACAGCGGTCAGGATA 61.960 60.000 6.06 0.00 44.31 2.59
2372 2749 2.608988 CTGCTGTGGGGAGGGAGT 60.609 66.667 0.00 0.00 0.00 3.85
2417 2794 6.111382 GTCATTGTCATCTTTCATCTCCAGA 58.889 40.000 0.00 0.00 0.00 3.86
2421 2798 6.017275 GGGATGTCATTGTCATCTTTCATCTC 60.017 42.308 18.86 4.68 40.76 2.75
2474 2851 2.579684 AAGCCGTGATCTCTTCGCCC 62.580 60.000 0.00 0.00 0.00 6.13
2492 2869 4.717877 TGAGCCATTCAGACTTCAGAAAA 58.282 39.130 0.00 0.00 0.00 2.29
2496 2873 3.672808 ACTTGAGCCATTCAGACTTCAG 58.327 45.455 0.00 0.00 37.07 3.02
2517 2894 0.966179 TACTCGTGCTGCCTTCTCAA 59.034 50.000 0.00 0.00 0.00 3.02
2520 2897 1.213013 CGTACTCGTGCTGCCTTCT 59.787 57.895 0.00 0.00 0.00 2.85
2540 2917 4.898002 TCAGTCGTCTGATGCAGC 57.102 55.556 8.34 0.00 44.58 5.25
2600 2977 2.151202 TCTTTCCTAAAAGGCAGCACG 58.849 47.619 0.00 0.00 41.88 5.34
2604 2981 5.413309 TCTCTCTCTTTCCTAAAAGGCAG 57.587 43.478 0.00 0.00 41.88 4.85
2634 3011 5.242171 TCTGAAGCAGCTTTGATTTGATGAA 59.758 36.000 9.62 0.00 0.00 2.57
2713 3090 3.127203 GCATAGCTCATCATCCTCATTGC 59.873 47.826 0.00 0.00 0.00 3.56
2777 3154 0.674895 ACAGCAAACCTCGGAGATGC 60.675 55.000 17.17 17.17 33.89 3.91
2846 3223 3.545481 CGTGCGACATCGGTCTGC 61.545 66.667 3.08 0.00 42.05 4.26
2861 3238 2.910479 TCGGACAGTGAGTGGCGT 60.910 61.111 0.00 0.00 33.17 5.68
2870 3247 2.431057 ACTGAGTTTTGACTCGGACAGT 59.569 45.455 19.21 7.40 43.87 3.55
2901 3278 4.571580 GTGGCTCTCAATCTTCAGATCTTG 59.428 45.833 0.00 0.00 32.75 3.02
3030 3407 2.464157 AACCGCTCTTCTTTCTCCAG 57.536 50.000 0.00 0.00 0.00 3.86
3095 3472 4.873746 TCCTACCATAGATACAAGCTGC 57.126 45.455 0.00 0.00 0.00 5.25
3110 3487 3.440522 GCTGAACCAGTTTTGATCCTACC 59.559 47.826 0.00 0.00 33.43 3.18
3233 3610 4.019950 TCATCCAGACAGCTCTTCATTGAA 60.020 41.667 0.00 0.00 0.00 2.69
3236 3613 3.118334 CCTCATCCAGACAGCTCTTCATT 60.118 47.826 0.00 0.00 0.00 2.57
3359 3736 0.596600 GGACAGTCGCGTCAAGTGAA 60.597 55.000 5.77 0.00 41.58 3.18
3362 3739 2.050351 CGGACAGTCGCGTCAAGT 60.050 61.111 5.77 3.29 37.66 3.16
3375 3752 3.053831 TGTTCTCTTCATTTCCCGGAC 57.946 47.619 0.73 0.00 0.00 4.79
3400 3777 2.358615 GACCATCTGTGCACGGCA 60.359 61.111 21.33 10.31 35.60 5.69
3404 3781 4.281941 TCTCCTATATGACCATCTGTGCAC 59.718 45.833 10.75 10.75 0.00 4.57
3405 3782 4.482990 TCTCCTATATGACCATCTGTGCA 58.517 43.478 0.00 0.00 0.00 4.57
3406 3783 5.186603 TCATCTCCTATATGACCATCTGTGC 59.813 44.000 0.00 0.00 0.00 4.57
3410 3787 5.962641 TGCATCATCTCCTATATGACCATCT 59.037 40.000 0.00 0.00 36.24 2.90
3413 3790 4.468868 CCTGCATCATCTCCTATATGACCA 59.531 45.833 0.00 0.00 36.24 4.02
3474 3851 8.803201 TCGAAATCACTGTATGCTTTAGATAG 57.197 34.615 0.00 0.00 27.37 2.08
3476 3853 8.492673 TTTCGAAATCACTGTATGCTTTAGAT 57.507 30.769 6.47 0.00 31.08 1.98
3934 4319 7.069950 ACAGTCCTCTTCAGTAACATGCATATA 59.930 37.037 0.00 0.00 0.00 0.86
4171 4572 4.994852 TCACCTTAGAACTCAAACCAATCG 59.005 41.667 0.00 0.00 0.00 3.34
4224 4625 5.934402 TCCTCTACATAAGTCCCAACTTC 57.066 43.478 0.00 0.00 44.64 3.01
4242 4643 7.734942 AGAATCTTGAGATACCATTCTTCCTC 58.265 38.462 0.00 0.00 31.11 3.71
4476 4888 7.050377 AGTACATCAACCTGAATCACATTAGG 58.950 38.462 0.00 0.00 36.39 2.69
4528 4940 9.780186 GTGCTATATAGATTTTACCAAGAACCT 57.220 33.333 14.16 0.00 0.00 3.50
4529 4941 9.780186 AGTGCTATATAGATTTTACCAAGAACC 57.220 33.333 14.16 0.00 0.00 3.62
4646 5058 8.514594 GCTAAAAGCTGCATGTCCATATTATTA 58.485 33.333 1.02 0.00 38.45 0.98
4647 5059 7.373493 GCTAAAAGCTGCATGTCCATATTATT 58.627 34.615 1.02 0.00 38.45 1.40
4662 5074 2.808543 AGAACCTTCACGCTAAAAGCTG 59.191 45.455 0.00 0.00 39.60 4.24
4665 5077 5.917541 TTGTAGAACCTTCACGCTAAAAG 57.082 39.130 0.00 0.00 0.00 2.27
4672 5084 7.010183 ACGATTATGAATTGTAGAACCTTCACG 59.990 37.037 0.00 0.00 33.73 4.35
4711 5123 0.965866 AGAATCTCGGTCACCTGCGA 60.966 55.000 0.00 0.00 0.00 5.10
4800 5212 4.024387 TCCAAGTCAAACGTATTCAAGTGC 60.024 41.667 0.00 0.00 0.00 4.40
4804 5216 5.361427 TCTGTCCAAGTCAAACGTATTCAA 58.639 37.500 0.00 0.00 0.00 2.69
4805 5217 4.951254 TCTGTCCAAGTCAAACGTATTCA 58.049 39.130 0.00 0.00 0.00 2.57
4806 5218 5.063564 GGATCTGTCCAAGTCAAACGTATTC 59.936 44.000 0.00 0.00 44.42 1.75
4807 5219 4.935808 GGATCTGTCCAAGTCAAACGTATT 59.064 41.667 0.00 0.00 44.42 1.89
4808 5220 4.504858 GGATCTGTCCAAGTCAAACGTAT 58.495 43.478 0.00 0.00 44.42 3.06
4809 5221 3.921677 GGATCTGTCCAAGTCAAACGTA 58.078 45.455 0.00 0.00 44.42 3.57
4810 5222 2.767505 GGATCTGTCCAAGTCAAACGT 58.232 47.619 0.00 0.00 44.42 3.99
4884 5306 9.284968 ACTACTTTGACTGCAACTATGTTTATT 57.715 29.630 0.00 0.00 32.79 1.40
4888 5310 7.599245 GTCTACTACTTTGACTGCAACTATGTT 59.401 37.037 0.00 0.00 32.79 2.71
4890 5312 7.090808 TGTCTACTACTTTGACTGCAACTATG 58.909 38.462 0.00 0.00 32.79 2.23
4946 5368 8.049655 ACAAATGAAGCCTAAGAAAAGAGATC 57.950 34.615 0.00 0.00 0.00 2.75
4962 5387 7.922837 TGCACACTGATATGATACAAATGAAG 58.077 34.615 0.00 0.00 0.00 3.02
5005 5430 1.002773 ACAAGCGAACCCTACGGATTT 59.997 47.619 0.00 0.00 0.00 2.17
5080 5512 1.813513 AGCAGAGAAACAATCACCCG 58.186 50.000 0.00 0.00 0.00 5.28
5136 5568 6.754209 GGACTGACTTATACACATTCACTGAG 59.246 42.308 0.00 0.00 0.00 3.35
5144 5583 8.135382 ACAAACTAGGACTGACTTATACACAT 57.865 34.615 0.00 0.00 0.00 3.21
5191 5630 7.652300 TTGCACTAGTTACAACTTACAGATG 57.348 36.000 0.00 0.00 40.37 2.90
5215 5660 4.019321 TGCACTAGTAGCCCTGAAGAAAAT 60.019 41.667 12.71 0.00 0.00 1.82
5220 5665 1.827969 ACTGCACTAGTAGCCCTGAAG 59.172 52.381 12.71 0.00 38.04 3.02
5261 5708 6.913170 TGCAATTCATACTTCTTTCCAGTTC 58.087 36.000 0.00 0.00 0.00 3.01
5265 5712 7.119699 CACTACTGCAATTCATACTTCTTTCCA 59.880 37.037 0.00 0.00 0.00 3.53
5284 5731 3.440173 CCATTAACAGGTTGGCACTACTG 59.560 47.826 9.84 9.84 37.01 2.74
5286 5733 3.681593 TCCATTAACAGGTTGGCACTAC 58.318 45.455 0.00 0.00 0.00 2.73
5317 5764 7.363530 CCCATTGAGATGATGAGACAAATTTGT 60.364 37.037 23.49 23.49 38.70 2.83
5340 5787 6.762077 TCATGAGTTTACATATCATCCCCA 57.238 37.500 0.00 0.00 31.38 4.96
5522 5975 3.358111 TTCAAAGCGAATATGGGGTCA 57.642 42.857 0.00 0.00 0.00 4.02
5617 6070 5.097529 AGTTTCGTAATCTTGTCGCGATAA 58.902 37.500 14.06 16.13 0.00 1.75
5618 6071 4.665212 AGTTTCGTAATCTTGTCGCGATA 58.335 39.130 14.06 6.83 0.00 2.92
5849 6304 2.152016 GGACAAACCCAAGACACTAGC 58.848 52.381 0.00 0.00 0.00 3.42
5861 6316 3.008485 AGTCATCTTCCTCAGGACAAACC 59.992 47.826 0.00 0.00 39.35 3.27
5909 6367 4.164988 CCTCAACACCCTTCCTCTTCATAT 59.835 45.833 0.00 0.00 0.00 1.78
5910 6368 3.519510 CCTCAACACCCTTCCTCTTCATA 59.480 47.826 0.00 0.00 0.00 2.15
5911 6369 2.307098 CCTCAACACCCTTCCTCTTCAT 59.693 50.000 0.00 0.00 0.00 2.57
5912 6370 1.699634 CCTCAACACCCTTCCTCTTCA 59.300 52.381 0.00 0.00 0.00 3.02
5913 6371 1.700186 ACCTCAACACCCTTCCTCTTC 59.300 52.381 0.00 0.00 0.00 2.87
5914 6372 1.421646 CACCTCAACACCCTTCCTCTT 59.578 52.381 0.00 0.00 0.00 2.85
5924 6382 1.898574 CTGGCCACCACCTCAACAC 60.899 63.158 0.00 0.00 0.00 3.32
6104 6562 5.340439 ACTCCCTCCGTAAAGAATTAGTG 57.660 43.478 0.00 0.00 0.00 2.74
6109 6567 7.110043 CTTTACTACTCCCTCCGTAAAGAAT 57.890 40.000 12.83 0.00 45.70 2.40
6233 6691 3.118592 AGGCCAAGAAGTTCTTAGGATCG 60.119 47.826 25.70 12.42 33.78 3.69
6280 6738 5.882000 TGTGATCCTGTGGATGACTTAATTG 59.118 40.000 15.08 0.00 44.59 2.32
6281 6739 6.065976 TGTGATCCTGTGGATGACTTAATT 57.934 37.500 15.08 0.00 44.59 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.