Multiple sequence alignment - TraesCS5D01G055200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G055200 chr5D 100.000 3997 0 0 1 3997 51924300 51920304 0.000000e+00 7382.0
1 TraesCS5D01G055200 chr5B 95.688 1090 29 10 2050 3137 55041132 55040059 0.000000e+00 1736.0
2 TraesCS5D01G055200 chr5B 93.455 1100 58 7 955 2053 55042515 55041429 0.000000e+00 1620.0
3 TraesCS5D01G055200 chr5B 88.160 701 47 11 3300 3997 55039572 55038905 0.000000e+00 802.0
4 TraesCS5D01G055200 chr5B 85.075 201 24 5 1 198 55043310 55043113 2.440000e-47 200.0
5 TraesCS5D01G055200 chr7D 85.138 1016 127 14 1044 2053 411894697 411893700 0.000000e+00 1018.0
6 TraesCS5D01G055200 chr7D 83.349 1087 136 27 2051 3126 411892952 411891900 0.000000e+00 963.0
7 TraesCS5D01G055200 chr7D 80.906 508 74 12 3503 3997 411891628 411891131 2.920000e-101 379.0
8 TraesCS5D01G055200 chr7D 90.833 240 20 2 200 438 176959069 176959307 1.790000e-83 320.0
9 TraesCS5D01G055200 chr7B 85.163 984 120 16 1044 2020 426308363 426307399 0.000000e+00 985.0
10 TraesCS5D01G055200 chr7B 83.380 1083 135 29 2051 3126 426307040 426305996 0.000000e+00 961.0
11 TraesCS5D01G055200 chr7B 79.159 571 70 24 3306 3839 426305919 426305361 2.290000e-92 350.0
12 TraesCS5D01G055200 chr7B 79.874 159 26 6 12 166 320143031 320143187 1.170000e-20 111.0
13 TraesCS5D01G055200 chr7A 82.530 1099 139 33 2051 3126 473003638 473002570 0.000000e+00 917.0
14 TraesCS5D01G055200 chr7A 82.812 1024 145 17 1044 2052 473011149 473010142 0.000000e+00 887.0
15 TraesCS5D01G055200 chr7A 81.957 460 60 18 3199 3650 473002548 473002104 6.310000e-98 368.0
16 TraesCS5D01G055200 chr7A 84.894 331 42 6 3670 3997 473002014 473001689 1.070000e-85 327.0
17 TraesCS5D01G055200 chr7A 91.250 240 18 3 200 438 421714 421951 1.390000e-84 324.0
18 TraesCS5D01G055200 chr2A 95.035 423 15 5 439 860 35636628 35637045 0.000000e+00 660.0
19 TraesCS5D01G055200 chr2A 92.718 412 25 3 449 860 49281921 49281515 1.240000e-164 590.0
20 TraesCS5D01G055200 chr2A 90.833 240 20 2 200 438 468294286 468294048 1.790000e-83 320.0
21 TraesCS5D01G055200 chr2A 100.000 28 0 0 879 906 49281530 49281503 7.000000e-03 52.8
22 TraesCS5D01G055200 chr5A 92.995 414 24 3 448 859 513643826 513643416 2.060000e-167 599.0
23 TraesCS5D01G055200 chr5A 92.944 411 24 4 449 858 52850449 52850043 9.560000e-166 593.0
24 TraesCS5D01G055200 chr3B 92.548 416 26 3 445 860 450226197 450226607 3.440000e-165 592.0
25 TraesCS5D01G055200 chr3B 92.140 229 16 2 200 427 112514526 112514299 4.980000e-84 322.0
26 TraesCS5D01G055200 chr3B 91.775 231 18 1 200 429 112951806 112951576 1.790000e-83 320.0
27 TraesCS5D01G055200 chr6D 91.190 420 31 4 443 860 293328664 293329079 2.080000e-157 566.0
28 TraesCS5D01G055200 chr6D 90.535 243 14 6 199 438 407174492 407174728 3.000000e-81 313.0
29 TraesCS5D01G055200 chr6D 89.020 255 23 5 199 452 470052318 470052068 1.080000e-80 311.0
30 TraesCS5D01G055200 chr2D 91.041 413 31 6 449 860 108258790 108259197 1.620000e-153 553.0
31 TraesCS5D01G055200 chr2B 91.795 390 25 5 455 843 756305930 756305547 1.630000e-148 536.0
32 TraesCS5D01G055200 chr4B 89.100 422 36 10 442 860 89406440 89406854 2.130000e-142 516.0
33 TraesCS5D01G055200 chr4B 90.083 242 20 4 199 438 243813056 243813295 1.080000e-80 311.0
34 TraesCS5D01G055200 chr3D 90.456 241 19 4 199 438 280046392 280046629 8.340000e-82 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G055200 chr5D 51920304 51924300 3996 True 7382.000000 7382 100.000000 1 3997 1 chr5D.!!$R1 3996
1 TraesCS5D01G055200 chr5B 55038905 55043310 4405 True 1089.500000 1736 90.594500 1 3997 4 chr5B.!!$R1 3996
2 TraesCS5D01G055200 chr7D 411891131 411894697 3566 True 786.666667 1018 83.131000 1044 3997 3 chr7D.!!$R1 2953
3 TraesCS5D01G055200 chr7B 426305361 426308363 3002 True 765.333333 985 82.567333 1044 3839 3 chr7B.!!$R1 2795
4 TraesCS5D01G055200 chr7A 473010142 473011149 1007 True 887.000000 887 82.812000 1044 2052 1 chr7A.!!$R1 1008
5 TraesCS5D01G055200 chr7A 473001689 473003638 1949 True 537.333333 917 83.127000 2051 3997 3 chr7A.!!$R2 1946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 221 0.032217 TACTACCCCCGTCCCGATTT 60.032 55.0 0.00 0.0 0.00 2.17 F
1200 1569 0.032615 CCTGCTCCTCCAGGTACTCT 60.033 60.0 0.10 0.0 45.87 3.24 F
1586 1969 0.392998 CCCATGGACTTGAGTTCCCG 60.393 60.0 15.22 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 2066 0.109086 ATCTTGTGGAGACGACAGCG 60.109 55.000 0.00 0.0 44.79 5.18 R
2541 3725 1.732259 CACTCCCGTGCACTGAAATAC 59.268 52.381 16.19 0.0 33.82 1.89 R
3544 5082 0.039618 GGGAATCCCAGCTGTCCAAA 59.960 55.000 14.67 0.0 44.65 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.343814 TCATCTTTTTGGGTGTTCTTTCCC 59.656 41.667 0.00 0.00 43.67 3.97
64 65 6.613679 TCTTTTTGGGTGTTCTTTCCCTAATT 59.386 34.615 0.00 0.00 43.74 1.40
65 66 7.785506 TCTTTTTGGGTGTTCTTTCCCTAATTA 59.214 33.333 0.00 0.00 43.74 1.40
66 67 8.499288 TTTTTGGGTGTTCTTTCCCTAATTAT 57.501 30.769 0.00 0.00 43.74 1.28
77 78 8.950007 TCTTTCCCTAATTATCCAAACACTTT 57.050 30.769 0.00 0.00 0.00 2.66
78 79 8.802267 TCTTTCCCTAATTATCCAAACACTTTG 58.198 33.333 0.00 0.00 40.32 2.77
94 95 4.223923 ACACTTTGGAAAAACAACATCCCA 59.776 37.500 0.00 0.00 32.01 4.37
103 104 6.415798 AAAAACAACATCCCAAAGAAAACG 57.584 33.333 0.00 0.00 0.00 3.60
110 111 3.611766 TCCCAAAGAAAACGGCAAAAA 57.388 38.095 0.00 0.00 0.00 1.94
112 113 3.195825 TCCCAAAGAAAACGGCAAAAAGA 59.804 39.130 0.00 0.00 0.00 2.52
118 119 1.555477 AAACGGCAAAAAGAAGTGCG 58.445 45.000 0.00 0.00 41.85 5.34
119 120 0.248866 AACGGCAAAAAGAAGTGCGG 60.249 50.000 0.00 0.00 44.18 5.69
120 121 1.098712 ACGGCAAAAAGAAGTGCGGA 61.099 50.000 9.75 0.00 42.00 5.54
125 126 2.854805 GCAAAAAGAAGTGCGGAGACAC 60.855 50.000 0.00 0.00 41.02 3.67
137 138 1.135315 CGGAGACACGATAAAACCCGA 60.135 52.381 0.00 0.00 38.10 5.14
142 143 3.744426 AGACACGATAAAACCCGACAAAG 59.256 43.478 0.00 0.00 0.00 2.77
147 148 3.063045 CGATAAAACCCGACAAAGCCTAC 59.937 47.826 0.00 0.00 0.00 3.18
150 151 3.994931 AAACCCGACAAAGCCTACTAT 57.005 42.857 0.00 0.00 0.00 2.12
155 156 3.243771 CCCGACAAAGCCTACTATGTAGG 60.244 52.174 16.92 16.92 38.02 3.18
166 169 6.422776 CCTACTATGTAGGCACAAACAAAG 57.577 41.667 10.37 0.00 38.42 2.77
167 170 5.354234 CCTACTATGTAGGCACAAACAAAGG 59.646 44.000 10.37 0.00 38.42 3.11
169 172 5.570320 ACTATGTAGGCACAAACAAAGGAT 58.430 37.500 0.00 0.00 38.42 3.24
171 174 7.172342 ACTATGTAGGCACAAACAAAGGATAA 58.828 34.615 0.00 0.00 38.42 1.75
174 177 7.113658 TGTAGGCACAAACAAAGGATAAAAA 57.886 32.000 0.00 0.00 0.00 1.94
198 201 7.798596 AATCACATAGTTTGGACTCATGATC 57.201 36.000 0.00 0.00 37.33 2.92
199 202 6.550938 TCACATAGTTTGGACTCATGATCT 57.449 37.500 0.00 0.00 37.33 2.75
202 205 7.343057 TCACATAGTTTGGACTCATGATCTACT 59.657 37.037 0.00 5.09 37.33 2.57
203 206 8.633561 CACATAGTTTGGACTCATGATCTACTA 58.366 37.037 0.00 6.77 37.33 1.82
204 207 8.634444 ACATAGTTTGGACTCATGATCTACTAC 58.366 37.037 0.00 0.00 37.33 2.73
205 208 6.472686 AGTTTGGACTCATGATCTACTACC 57.527 41.667 0.00 0.00 0.00 3.18
206 209 5.364157 AGTTTGGACTCATGATCTACTACCC 59.636 44.000 0.00 0.00 0.00 3.69
207 210 3.845860 TGGACTCATGATCTACTACCCC 58.154 50.000 0.00 0.00 0.00 4.95
208 211 3.166679 GGACTCATGATCTACTACCCCC 58.833 54.545 0.00 0.00 0.00 5.40
209 212 2.820787 GACTCATGATCTACTACCCCCG 59.179 54.545 0.00 0.00 0.00 5.73
210 213 2.177233 ACTCATGATCTACTACCCCCGT 59.823 50.000 0.00 0.00 0.00 5.28
211 214 2.820787 CTCATGATCTACTACCCCCGTC 59.179 54.545 0.00 0.00 0.00 4.79
212 215 1.893801 CATGATCTACTACCCCCGTCC 59.106 57.143 0.00 0.00 0.00 4.79
213 216 0.186873 TGATCTACTACCCCCGTCCC 59.813 60.000 0.00 0.00 0.00 4.46
214 217 0.892814 GATCTACTACCCCCGTCCCG 60.893 65.000 0.00 0.00 0.00 5.14
215 218 1.355718 ATCTACTACCCCCGTCCCGA 61.356 60.000 0.00 0.00 0.00 5.14
216 219 1.152368 CTACTACCCCCGTCCCGAT 59.848 63.158 0.00 0.00 0.00 4.18
217 220 0.468771 CTACTACCCCCGTCCCGATT 60.469 60.000 0.00 0.00 0.00 3.34
218 221 0.032217 TACTACCCCCGTCCCGATTT 60.032 55.000 0.00 0.00 0.00 2.17
219 222 0.032217 ACTACCCCCGTCCCGATTTA 60.032 55.000 0.00 0.00 0.00 1.40
220 223 1.345063 CTACCCCCGTCCCGATTTAT 58.655 55.000 0.00 0.00 0.00 1.40
221 224 1.695788 CTACCCCCGTCCCGATTTATT 59.304 52.381 0.00 0.00 0.00 1.40
222 225 0.181824 ACCCCCGTCCCGATTTATTG 59.818 55.000 0.00 0.00 0.00 1.90
223 226 0.536460 CCCCCGTCCCGATTTATTGG 60.536 60.000 0.00 0.00 0.00 3.16
224 227 0.181824 CCCCGTCCCGATTTATTGGT 59.818 55.000 0.00 0.00 0.00 3.67
225 228 1.589803 CCCGTCCCGATTTATTGGTC 58.410 55.000 0.00 0.00 0.00 4.02
226 229 1.589803 CCGTCCCGATTTATTGGTCC 58.410 55.000 0.00 0.00 0.00 4.46
227 230 1.589803 CGTCCCGATTTATTGGTCCC 58.410 55.000 0.00 0.00 0.00 4.46
228 231 1.812708 CGTCCCGATTTATTGGTCCCC 60.813 57.143 0.00 0.00 0.00 4.81
229 232 1.493446 GTCCCGATTTATTGGTCCCCT 59.507 52.381 0.00 0.00 0.00 4.79
230 233 2.092049 GTCCCGATTTATTGGTCCCCTT 60.092 50.000 0.00 0.00 0.00 3.95
231 234 2.583566 TCCCGATTTATTGGTCCCCTTT 59.416 45.455 0.00 0.00 0.00 3.11
232 235 2.693074 CCCGATTTATTGGTCCCCTTTG 59.307 50.000 0.00 0.00 0.00 2.77
233 236 3.361786 CCGATTTATTGGTCCCCTTTGT 58.638 45.455 0.00 0.00 0.00 2.83
234 237 4.528920 CCGATTTATTGGTCCCCTTTGTA 58.471 43.478 0.00 0.00 0.00 2.41
235 238 4.951094 CCGATTTATTGGTCCCCTTTGTAA 59.049 41.667 0.00 0.00 0.00 2.41
236 239 5.596772 CCGATTTATTGGTCCCCTTTGTAAT 59.403 40.000 0.00 0.00 0.00 1.89
237 240 6.097696 CCGATTTATTGGTCCCCTTTGTAATT 59.902 38.462 0.00 0.00 0.00 1.40
238 241 7.364320 CCGATTTATTGGTCCCCTTTGTAATTT 60.364 37.037 0.00 0.00 0.00 1.82
239 242 7.491048 CGATTTATTGGTCCCCTTTGTAATTTG 59.509 37.037 0.00 0.00 0.00 2.32
240 243 7.619512 TTTATTGGTCCCCTTTGTAATTTGT 57.380 32.000 0.00 0.00 0.00 2.83
241 244 4.946478 TTGGTCCCCTTTGTAATTTGTG 57.054 40.909 0.00 0.00 0.00 3.33
242 245 2.630580 TGGTCCCCTTTGTAATTTGTGC 59.369 45.455 0.00 0.00 0.00 4.57
243 246 2.028476 GGTCCCCTTTGTAATTTGTGCC 60.028 50.000 0.00 0.00 0.00 5.01
244 247 2.630580 GTCCCCTTTGTAATTTGTGCCA 59.369 45.455 0.00 0.00 0.00 4.92
245 248 3.070302 GTCCCCTTTGTAATTTGTGCCAA 59.930 43.478 0.00 0.00 0.00 4.52
246 249 3.906846 TCCCCTTTGTAATTTGTGCCAAT 59.093 39.130 0.00 0.00 0.00 3.16
247 250 4.349342 TCCCCTTTGTAATTTGTGCCAATT 59.651 37.500 0.00 0.00 0.00 2.32
248 251 5.069318 CCCCTTTGTAATTTGTGCCAATTT 58.931 37.500 0.00 0.00 0.00 1.82
249 252 5.534278 CCCCTTTGTAATTTGTGCCAATTTT 59.466 36.000 0.00 0.00 0.00 1.82
250 253 6.040278 CCCCTTTGTAATTTGTGCCAATTTTT 59.960 34.615 0.00 0.00 0.00 1.94
251 254 6.916932 CCCTTTGTAATTTGTGCCAATTTTTG 59.083 34.615 0.00 0.00 0.00 2.44
252 255 7.201767 CCCTTTGTAATTTGTGCCAATTTTTGA 60.202 33.333 0.00 0.00 0.00 2.69
253 256 7.643371 CCTTTGTAATTTGTGCCAATTTTTGAC 59.357 33.333 0.00 0.00 0.00 3.18
254 257 6.610741 TGTAATTTGTGCCAATTTTTGACC 57.389 33.333 0.00 0.00 0.00 4.02
255 258 6.115446 TGTAATTTGTGCCAATTTTTGACCA 58.885 32.000 0.00 0.00 0.00 4.02
256 259 6.599244 TGTAATTTGTGCCAATTTTTGACCAA 59.401 30.769 0.00 0.00 0.00 3.67
257 260 6.521151 AATTTGTGCCAATTTTTGACCAAA 57.479 29.167 0.00 0.00 0.00 3.28
258 261 6.712179 ATTTGTGCCAATTTTTGACCAAAT 57.288 29.167 0.00 0.00 32.46 2.32
259 262 7.814264 ATTTGTGCCAATTTTTGACCAAATA 57.186 28.000 0.00 0.00 33.96 1.40
260 263 7.814264 TTTGTGCCAATTTTTGACCAAATAT 57.186 28.000 0.00 0.00 0.00 1.28
261 264 7.814264 TTGTGCCAATTTTTGACCAAATATT 57.186 28.000 5.67 5.67 34.04 1.28
262 265 7.814264 TGTGCCAATTTTTGACCAAATATTT 57.186 28.000 7.94 0.00 32.34 1.40
263 266 8.908786 TGTGCCAATTTTTGACCAAATATTTA 57.091 26.923 0.00 0.00 32.34 1.40
264 267 9.342308 TGTGCCAATTTTTGACCAAATATTTAA 57.658 25.926 0.00 0.00 32.34 1.52
265 268 9.605955 GTGCCAATTTTTGACCAAATATTTAAC 57.394 29.630 0.00 0.00 32.34 2.01
266 269 9.566432 TGCCAATTTTTGACCAAATATTTAACT 57.434 25.926 0.00 0.00 32.34 2.24
322 325 7.780008 ATATCGTTGGATTCGTATTTGAACA 57.220 32.000 0.00 0.00 34.00 3.18
323 326 6.677781 ATCGTTGGATTCGTATTTGAACAT 57.322 33.333 0.00 0.00 0.00 2.71
324 327 7.780008 ATCGTTGGATTCGTATTTGAACATA 57.220 32.000 0.00 0.00 0.00 2.29
325 328 7.229228 TCGTTGGATTCGTATTTGAACATAG 57.771 36.000 0.00 0.00 0.00 2.23
326 329 6.814644 TCGTTGGATTCGTATTTGAACATAGT 59.185 34.615 0.00 0.00 0.00 2.12
327 330 7.332430 TCGTTGGATTCGTATTTGAACATAGTT 59.668 33.333 0.00 0.00 0.00 2.24
328 331 7.960738 CGTTGGATTCGTATTTGAACATAGTTT 59.039 33.333 0.00 0.00 0.00 2.66
329 332 9.274065 GTTGGATTCGTATTTGAACATAGTTTC 57.726 33.333 0.00 0.00 0.00 2.78
330 333 7.981142 TGGATTCGTATTTGAACATAGTTTCC 58.019 34.615 0.00 0.00 0.00 3.13
331 334 7.608376 TGGATTCGTATTTGAACATAGTTTCCA 59.392 33.333 0.00 0.00 29.31 3.53
332 335 8.455682 GGATTCGTATTTGAACATAGTTTCCAA 58.544 33.333 0.00 0.00 0.00 3.53
334 337 9.787532 ATTCGTATTTGAACATAGTTTCCAATG 57.212 29.630 0.00 0.00 0.00 2.82
335 338 8.554835 TCGTATTTGAACATAGTTTCCAATGA 57.445 30.769 0.00 0.00 0.00 2.57
336 339 9.173021 TCGTATTTGAACATAGTTTCCAATGAT 57.827 29.630 0.00 0.00 0.00 2.45
411 414 9.866936 CAAAATTTGACACAAAATACAATGAGG 57.133 29.630 0.00 0.00 0.00 3.86
412 415 9.829507 AAAATTTGACACAAAATACAATGAGGA 57.170 25.926 0.00 0.00 0.00 3.71
414 417 9.643693 AATTTGACACAAAATACAATGAGGATC 57.356 29.630 0.00 0.00 0.00 3.36
429 432 5.414789 TGAGGATCAATAAACCAAGACGA 57.585 39.130 0.00 0.00 45.97 4.20
430 433 5.800296 TGAGGATCAATAAACCAAGACGAA 58.200 37.500 0.00 0.00 45.97 3.85
431 434 6.414732 TGAGGATCAATAAACCAAGACGAAT 58.585 36.000 0.00 0.00 45.97 3.34
432 435 6.316140 TGAGGATCAATAAACCAAGACGAATG 59.684 38.462 0.00 0.00 45.97 2.67
433 436 6.180472 AGGATCAATAAACCAAGACGAATGT 58.820 36.000 0.00 0.00 0.00 2.71
434 437 7.335627 AGGATCAATAAACCAAGACGAATGTA 58.664 34.615 0.00 0.00 0.00 2.29
435 438 7.495934 AGGATCAATAAACCAAGACGAATGTAG 59.504 37.037 0.00 0.00 0.00 2.74
436 439 7.280205 GGATCAATAAACCAAGACGAATGTAGT 59.720 37.037 0.00 0.00 0.00 2.73
448 451 6.613233 AGACGAATGTAGTAACTCTCAACAG 58.387 40.000 0.00 0.00 0.00 3.16
450 453 5.103000 CGAATGTAGTAACTCTCAACAGGG 58.897 45.833 0.00 0.00 0.00 4.45
451 454 5.105877 CGAATGTAGTAACTCTCAACAGGGA 60.106 44.000 0.00 0.00 0.00 4.20
453 456 6.681729 ATGTAGTAACTCTCAACAGGGAAA 57.318 37.500 0.00 0.00 0.00 3.13
454 457 6.488769 TGTAGTAACTCTCAACAGGGAAAA 57.511 37.500 0.00 0.00 0.00 2.29
455 458 6.891388 TGTAGTAACTCTCAACAGGGAAAAA 58.109 36.000 0.00 0.00 0.00 1.94
456 459 7.514721 TGTAGTAACTCTCAACAGGGAAAAAT 58.485 34.615 0.00 0.00 0.00 1.82
460 463 8.383175 AGTAACTCTCAACAGGGAAAAATATCA 58.617 33.333 0.00 0.00 0.00 2.15
462 465 6.183347 ACTCTCAACAGGGAAAAATATCAGG 58.817 40.000 0.00 0.00 0.00 3.86
464 467 5.945784 TCTCAACAGGGAAAAATATCAGGTG 59.054 40.000 0.00 0.00 0.00 4.00
465 468 5.886609 TCAACAGGGAAAAATATCAGGTGA 58.113 37.500 0.00 0.00 0.00 4.02
468 471 7.556275 TCAACAGGGAAAAATATCAGGTGATAC 59.444 37.037 1.72 0.00 39.57 2.24
469 472 6.365520 ACAGGGAAAAATATCAGGTGATACC 58.634 40.000 1.72 0.00 39.57 2.73
470 473 6.069088 ACAGGGAAAAATATCAGGTGATACCA 60.069 38.462 1.72 0.00 41.95 3.25
471 474 6.488006 CAGGGAAAAATATCAGGTGATACCAG 59.512 42.308 1.72 0.00 41.95 4.00
472 475 6.160459 AGGGAAAAATATCAGGTGATACCAGT 59.840 38.462 1.72 0.00 41.95 4.00
473 476 6.486993 GGGAAAAATATCAGGTGATACCAGTC 59.513 42.308 1.72 0.00 41.95 3.51
474 477 6.486993 GGAAAAATATCAGGTGATACCAGTCC 59.513 42.308 1.72 4.44 41.95 3.85
475 478 6.831664 AAAATATCAGGTGATACCAGTCCT 57.168 37.500 1.72 0.00 41.95 3.85
476 479 6.831664 AAATATCAGGTGATACCAGTCCTT 57.168 37.500 1.72 0.00 41.95 3.36
477 480 7.931015 AAATATCAGGTGATACCAGTCCTTA 57.069 36.000 1.72 0.00 41.95 2.69
478 481 7.546250 AATATCAGGTGATACCAGTCCTTAG 57.454 40.000 1.72 0.00 41.95 2.18
479 482 4.603094 TCAGGTGATACCAGTCCTTAGA 57.397 45.455 0.28 0.00 41.95 2.10
480 483 5.144159 TCAGGTGATACCAGTCCTTAGAT 57.856 43.478 0.28 0.00 41.95 1.98
481 484 4.895889 TCAGGTGATACCAGTCCTTAGATG 59.104 45.833 0.28 0.00 41.95 2.90
482 485 4.895889 CAGGTGATACCAGTCCTTAGATGA 59.104 45.833 0.28 0.00 41.95 2.92
483 486 5.541868 CAGGTGATACCAGTCCTTAGATGAT 59.458 44.000 0.28 0.00 41.95 2.45
484 487 6.721668 CAGGTGATACCAGTCCTTAGATGATA 59.278 42.308 0.28 0.00 41.95 2.15
485 488 6.722129 AGGTGATACCAGTCCTTAGATGATAC 59.278 42.308 0.28 0.00 41.95 2.24
486 489 6.071278 GGTGATACCAGTCCTTAGATGATACC 60.071 46.154 0.00 0.00 38.42 2.73
487 490 6.493802 GTGATACCAGTCCTTAGATGATACCA 59.506 42.308 0.00 0.00 0.00 3.25
488 491 7.179338 GTGATACCAGTCCTTAGATGATACCAT 59.821 40.741 0.00 0.00 35.29 3.55
489 492 5.815233 ACCAGTCCTTAGATGATACCATG 57.185 43.478 0.00 0.00 32.09 3.66
490 493 5.467738 ACCAGTCCTTAGATGATACCATGA 58.532 41.667 0.00 0.00 32.09 3.07
491 494 6.087456 ACCAGTCCTTAGATGATACCATGAT 58.913 40.000 0.00 0.00 32.09 2.45
492 495 7.248976 ACCAGTCCTTAGATGATACCATGATA 58.751 38.462 0.00 0.00 32.09 2.15
493 496 7.179338 ACCAGTCCTTAGATGATACCATGATAC 59.821 40.741 0.00 0.00 32.09 2.24
494 497 7.364232 CCAGTCCTTAGATGATACCATGATACC 60.364 44.444 0.00 0.00 32.09 2.73
495 498 7.179160 CAGTCCTTAGATGATACCATGATACCA 59.821 40.741 0.00 0.00 32.09 3.25
496 499 7.734865 AGTCCTTAGATGATACCATGATACCAA 59.265 37.037 0.00 0.00 32.09 3.67
497 500 7.819900 GTCCTTAGATGATACCATGATACCAAC 59.180 40.741 0.00 0.00 32.09 3.77
498 501 7.734865 TCCTTAGATGATACCATGATACCAACT 59.265 37.037 0.00 0.00 32.09 3.16
499 502 8.378565 CCTTAGATGATACCATGATACCAACTT 58.621 37.037 0.00 0.00 32.09 2.66
500 503 9.212641 CTTAGATGATACCATGATACCAACTTG 57.787 37.037 0.00 0.00 32.09 3.16
501 504 6.000219 AGATGATACCATGATACCAACTTGC 59.000 40.000 0.00 0.00 32.09 4.01
502 505 5.109500 TGATACCATGATACCAACTTGCA 57.891 39.130 0.00 0.00 0.00 4.08
503 506 5.504853 TGATACCATGATACCAACTTGCAA 58.495 37.500 0.00 0.00 0.00 4.08
504 507 5.948758 TGATACCATGATACCAACTTGCAAA 59.051 36.000 0.00 0.00 0.00 3.68
505 508 6.435591 TGATACCATGATACCAACTTGCAAAA 59.564 34.615 0.00 0.00 0.00 2.44
506 509 4.881920 ACCATGATACCAACTTGCAAAAC 58.118 39.130 0.00 0.00 0.00 2.43
507 510 4.588528 ACCATGATACCAACTTGCAAAACT 59.411 37.500 0.00 0.00 0.00 2.66
508 511 5.163513 CCATGATACCAACTTGCAAAACTC 58.836 41.667 0.00 0.00 0.00 3.01
509 512 5.278907 CCATGATACCAACTTGCAAAACTCA 60.279 40.000 0.00 0.00 0.00 3.41
510 513 5.843673 TGATACCAACTTGCAAAACTCAA 57.156 34.783 0.00 0.00 0.00 3.02
511 514 6.214191 TGATACCAACTTGCAAAACTCAAA 57.786 33.333 0.00 0.00 0.00 2.69
512 515 6.815089 TGATACCAACTTGCAAAACTCAAAT 58.185 32.000 0.00 0.00 0.00 2.32
513 516 7.271511 TGATACCAACTTGCAAAACTCAAATT 58.728 30.769 0.00 0.00 0.00 1.82
514 517 7.768120 TGATACCAACTTGCAAAACTCAAATTT 59.232 29.630 0.00 0.00 0.00 1.82
515 518 9.255304 GATACCAACTTGCAAAACTCAAATTTA 57.745 29.630 0.00 0.00 0.00 1.40
516 519 7.913674 ACCAACTTGCAAAACTCAAATTTAA 57.086 28.000 0.00 0.00 0.00 1.52
517 520 8.329203 ACCAACTTGCAAAACTCAAATTTAAA 57.671 26.923 0.00 0.00 0.00 1.52
518 521 8.233868 ACCAACTTGCAAAACTCAAATTTAAAC 58.766 29.630 0.00 0.00 0.00 2.01
519 522 8.233190 CCAACTTGCAAAACTCAAATTTAAACA 58.767 29.630 0.00 0.00 0.00 2.83
520 523 9.771915 CAACTTGCAAAACTCAAATTTAAACAT 57.228 25.926 0.00 0.00 0.00 2.71
521 524 9.771915 AACTTGCAAAACTCAAATTTAAACATG 57.228 25.926 0.00 0.00 0.00 3.21
522 525 8.945057 ACTTGCAAAACTCAAATTTAAACATGT 58.055 25.926 0.00 0.00 0.00 3.21
523 526 9.424659 CTTGCAAAACTCAAATTTAAACATGTC 57.575 29.630 0.00 0.00 0.00 3.06
524 527 8.484641 TGCAAAACTCAAATTTAAACATGTCA 57.515 26.923 0.00 0.00 0.00 3.58
525 528 8.939929 TGCAAAACTCAAATTTAAACATGTCAA 58.060 25.926 0.00 0.00 0.00 3.18
526 529 9.766277 GCAAAACTCAAATTTAAACATGTCAAA 57.234 25.926 0.00 3.30 0.00 2.69
565 568 8.929260 ATCATGGATGTTCACAATACATATGT 57.071 30.769 13.93 13.93 36.41 2.29
566 569 8.382030 TCATGGATGTTCACAATACATATGTC 57.618 34.615 12.68 0.00 36.41 3.06
567 570 6.843069 TGGATGTTCACAATACATATGTCG 57.157 37.500 12.68 5.00 36.41 4.35
568 571 6.578023 TGGATGTTCACAATACATATGTCGA 58.422 36.000 12.68 0.00 36.41 4.20
569 572 6.478673 TGGATGTTCACAATACATATGTCGAC 59.521 38.462 12.68 9.11 36.41 4.20
570 573 6.478673 GGATGTTCACAATACATATGTCGACA 59.521 38.462 22.48 22.48 36.41 4.35
571 574 7.011016 GGATGTTCACAATACATATGTCGACAA 59.989 37.037 24.13 12.36 36.41 3.18
572 575 7.056002 TGTTCACAATACATATGTCGACAAC 57.944 36.000 24.13 11.53 0.00 3.32
573 576 6.091577 TGTTCACAATACATATGTCGACAACC 59.908 38.462 24.13 0.00 0.00 3.77
574 577 5.113383 TCACAATACATATGTCGACAACCC 58.887 41.667 24.13 0.00 0.00 4.11
575 578 4.272504 CACAATACATATGTCGACAACCCC 59.727 45.833 24.13 0.00 0.00 4.95
576 579 4.163458 ACAATACATATGTCGACAACCCCT 59.837 41.667 24.13 8.19 0.00 4.79
577 580 5.364446 ACAATACATATGTCGACAACCCCTA 59.636 40.000 24.13 10.40 0.00 3.53
578 581 6.126997 ACAATACATATGTCGACAACCCCTAA 60.127 38.462 24.13 5.63 0.00 2.69
579 582 4.829872 ACATATGTCGACAACCCCTAAA 57.170 40.909 24.13 0.00 0.00 1.85
580 583 5.168647 ACATATGTCGACAACCCCTAAAA 57.831 39.130 24.13 0.00 0.00 1.52
581 584 5.562635 ACATATGTCGACAACCCCTAAAAA 58.437 37.500 24.13 0.00 0.00 1.94
610 613 9.102757 TCAGATCAAAATTCGAAATAGAGAAGG 57.897 33.333 0.00 0.00 0.00 3.46
611 614 9.102757 CAGATCAAAATTCGAAATAGAGAAGGA 57.897 33.333 0.00 0.00 0.00 3.36
612 615 9.323985 AGATCAAAATTCGAAATAGAGAAGGAG 57.676 33.333 0.00 0.00 0.00 3.69
613 616 9.319143 GATCAAAATTCGAAATAGAGAAGGAGA 57.681 33.333 0.00 0.00 0.00 3.71
614 617 9.672673 ATCAAAATTCGAAATAGAGAAGGAGAA 57.327 29.630 0.00 0.00 0.00 2.87
615 618 9.502091 TCAAAATTCGAAATAGAGAAGGAGAAA 57.498 29.630 0.00 0.00 0.00 2.52
616 619 9.766277 CAAAATTCGAAATAGAGAAGGAGAAAG 57.234 33.333 0.00 0.00 0.00 2.62
617 620 9.726438 AAAATTCGAAATAGAGAAGGAGAAAGA 57.274 29.630 0.00 0.00 0.00 2.52
618 621 9.726438 AAATTCGAAATAGAGAAGGAGAAAGAA 57.274 29.630 0.00 0.00 0.00 2.52
619 622 9.726438 AATTCGAAATAGAGAAGGAGAAAGAAA 57.274 29.630 0.00 0.00 0.00 2.52
620 623 9.726438 ATTCGAAATAGAGAAGGAGAAAGAAAA 57.274 29.630 0.00 0.00 0.00 2.29
621 624 9.555727 TTCGAAATAGAGAAGGAGAAAGAAAAA 57.444 29.630 0.00 0.00 0.00 1.94
646 649 8.597662 AAAAGACAAATCCATCATGAAAAGTG 57.402 30.769 0.00 0.00 0.00 3.16
647 650 6.906157 AGACAAATCCATCATGAAAAGTGT 57.094 33.333 0.00 0.00 0.00 3.55
648 651 6.917533 AGACAAATCCATCATGAAAAGTGTC 58.082 36.000 0.00 9.16 33.51 3.67
649 652 6.491062 AGACAAATCCATCATGAAAAGTGTCA 59.509 34.615 20.36 0.25 35.29 3.58
650 653 7.014518 AGACAAATCCATCATGAAAAGTGTCAA 59.985 33.333 20.36 0.00 35.29 3.18
651 654 7.499292 ACAAATCCATCATGAAAAGTGTCAAA 58.501 30.769 0.00 0.00 0.00 2.69
652 655 7.986320 ACAAATCCATCATGAAAAGTGTCAAAA 59.014 29.630 0.00 0.00 0.00 2.44
653 656 8.492748 CAAATCCATCATGAAAAGTGTCAAAAG 58.507 33.333 0.00 0.00 0.00 2.27
654 657 6.957920 TCCATCATGAAAAGTGTCAAAAGA 57.042 33.333 0.00 0.00 0.00 2.52
655 658 7.345422 TCCATCATGAAAAGTGTCAAAAGAA 57.655 32.000 0.00 0.00 0.00 2.52
656 659 7.428020 TCCATCATGAAAAGTGTCAAAAGAAG 58.572 34.615 0.00 0.00 0.00 2.85
657 660 7.285172 TCCATCATGAAAAGTGTCAAAAGAAGA 59.715 33.333 0.00 0.00 0.00 2.87
658 661 7.380602 CCATCATGAAAAGTGTCAAAAGAAGAC 59.619 37.037 0.00 0.00 36.55 3.01
659 662 7.389803 TCATGAAAAGTGTCAAAAGAAGACA 57.610 32.000 0.00 0.00 43.23 3.41
660 663 7.825681 TCATGAAAAGTGTCAAAAGAAGACAA 58.174 30.769 0.00 0.00 46.50 3.18
661 664 8.303156 TCATGAAAAGTGTCAAAAGAAGACAAA 58.697 29.630 0.00 0.00 46.50 2.83
662 665 8.924691 CATGAAAAGTGTCAAAAGAAGACAAAA 58.075 29.630 0.00 0.00 46.50 2.44
663 666 8.519492 TGAAAAGTGTCAAAAGAAGACAAAAG 57.481 30.769 0.00 0.00 46.50 2.27
664 667 8.141268 TGAAAAGTGTCAAAAGAAGACAAAAGT 58.859 29.630 0.00 0.00 46.50 2.66
665 668 8.887036 AAAAGTGTCAAAAGAAGACAAAAGTT 57.113 26.923 0.00 0.00 46.50 2.66
666 669 9.974980 AAAAGTGTCAAAAGAAGACAAAAGTTA 57.025 25.926 0.00 0.00 46.50 2.24
667 670 9.626045 AAAGTGTCAAAAGAAGACAAAAGTTAG 57.374 29.630 0.00 0.00 46.50 2.34
668 671 8.561738 AGTGTCAAAAGAAGACAAAAGTTAGA 57.438 30.769 0.00 0.00 46.50 2.10
669 672 9.010029 AGTGTCAAAAGAAGACAAAAGTTAGAA 57.990 29.630 0.00 0.00 46.50 2.10
670 673 9.788960 GTGTCAAAAGAAGACAAAAGTTAGAAT 57.211 29.630 0.00 0.00 46.50 2.40
671 674 9.787532 TGTCAAAAGAAGACAAAAGTTAGAATG 57.212 29.630 0.00 0.00 42.57 2.67
672 675 8.746751 GTCAAAAGAAGACAAAAGTTAGAATGC 58.253 33.333 0.00 0.00 36.06 3.56
673 676 7.920682 TCAAAAGAAGACAAAAGTTAGAATGCC 59.079 33.333 0.00 0.00 0.00 4.40
674 677 6.959639 AAGAAGACAAAAGTTAGAATGCCA 57.040 33.333 0.00 0.00 0.00 4.92
675 678 6.319141 AGAAGACAAAAGTTAGAATGCCAC 57.681 37.500 0.00 0.00 0.00 5.01
676 679 6.064717 AGAAGACAAAAGTTAGAATGCCACT 58.935 36.000 0.00 0.00 0.00 4.00
677 680 7.224297 AGAAGACAAAAGTTAGAATGCCACTA 58.776 34.615 0.00 0.00 0.00 2.74
678 681 7.885399 AGAAGACAAAAGTTAGAATGCCACTAT 59.115 33.333 0.00 0.00 0.00 2.12
679 682 8.409358 AAGACAAAAGTTAGAATGCCACTATT 57.591 30.769 0.00 0.00 0.00 1.73
680 683 8.045176 AGACAAAAGTTAGAATGCCACTATTC 57.955 34.615 0.00 0.00 37.34 1.75
681 684 7.665559 AGACAAAAGTTAGAATGCCACTATTCA 59.334 33.333 0.00 0.00 39.08 2.57
682 685 7.593825 ACAAAAGTTAGAATGCCACTATTCAC 58.406 34.615 0.00 0.00 39.08 3.18
683 686 7.230510 ACAAAAGTTAGAATGCCACTATTCACA 59.769 33.333 0.00 0.00 39.08 3.58
684 687 7.944729 AAAGTTAGAATGCCACTATTCACAT 57.055 32.000 0.00 0.00 39.08 3.21
685 688 9.461312 AAAAGTTAGAATGCCACTATTCACATA 57.539 29.630 0.00 0.00 39.08 2.29
686 689 9.632638 AAAGTTAGAATGCCACTATTCACATAT 57.367 29.630 0.00 0.00 39.08 1.78
687 690 8.613060 AGTTAGAATGCCACTATTCACATATG 57.387 34.615 0.00 0.00 39.08 1.78
688 691 8.432013 AGTTAGAATGCCACTATTCACATATGA 58.568 33.333 10.38 0.00 39.08 2.15
725 728 9.796120 TTTGTTTCTCTTTGTGTATTTCGAATT 57.204 25.926 0.00 0.00 0.00 2.17
726 729 9.796120 TTGTTTCTCTTTGTGTATTTCGAATTT 57.204 25.926 0.00 0.00 0.00 1.82
727 730 9.796120 TGTTTCTCTTTGTGTATTTCGAATTTT 57.204 25.926 0.00 0.00 0.00 1.82
731 734 9.825972 TCTCTTTGTGTATTTCGAATTTTGATC 57.174 29.630 0.00 0.00 0.00 2.92
733 736 9.611284 TCTTTGTGTATTTCGAATTTTGATCTG 57.389 29.630 0.00 0.00 0.00 2.90
734 737 9.611284 CTTTGTGTATTTCGAATTTTGATCTGA 57.389 29.630 0.00 0.00 0.00 3.27
735 738 9.958234 TTTGTGTATTTCGAATTTTGATCTGAA 57.042 25.926 0.00 0.00 0.00 3.02
760 763 4.829872 TTTAGGGGTTGTCGACATATGT 57.170 40.909 20.80 8.43 0.00 2.29
761 764 2.691409 AGGGGTTGTCGACATATGTG 57.309 50.000 20.80 6.04 0.00 3.21
762 765 1.906574 AGGGGTTGTCGACATATGTGT 59.093 47.619 20.80 0.00 42.49 3.72
763 766 2.304761 AGGGGTTGTCGACATATGTGTT 59.695 45.455 20.80 0.00 39.09 3.32
764 767 2.418628 GGGGTTGTCGACATATGTGTTG 59.581 50.000 20.80 3.47 39.09 3.33
765 768 3.071479 GGGTTGTCGACATATGTGTTGT 58.929 45.455 20.80 0.00 40.13 3.32
766 769 3.120338 GGGTTGTCGACATATGTGTTGTG 60.120 47.826 20.80 0.00 40.13 3.33
767 770 3.743911 GGTTGTCGACATATGTGTTGTGA 59.256 43.478 20.80 0.00 40.13 3.58
768 771 4.212425 GGTTGTCGACATATGTGTTGTGAA 59.788 41.667 20.80 0.00 40.13 3.18
769 772 4.983215 TGTCGACATATGTGTTGTGAAC 57.017 40.909 15.76 2.23 40.13 3.18
770 773 4.372656 TGTCGACATATGTGTTGTGAACA 58.627 39.130 15.76 4.61 40.13 3.18
773 776 5.348724 GTCGACATATGTGTTGTGAACATCT 59.651 40.000 14.43 0.00 44.35 2.90
774 777 6.530181 GTCGACATATGTGTTGTGAACATCTA 59.470 38.462 14.43 0.00 44.35 1.98
776 779 8.410141 TCGACATATGTGTTGTGAACATCTATA 58.590 33.333 14.43 0.00 44.35 1.31
819 822 9.766277 TTTGACATGTTTAAATTTGAGTTTTGC 57.234 25.926 0.00 0.00 0.00 3.68
820 823 8.484641 TGACATGTTTAAATTTGAGTTTTGCA 57.515 26.923 0.00 0.00 0.00 4.08
822 825 9.424659 GACATGTTTAAATTTGAGTTTTGCAAG 57.575 29.630 0.00 0.00 0.00 4.01
823 826 8.945057 ACATGTTTAAATTTGAGTTTTGCAAGT 58.055 25.926 0.00 0.00 0.00 3.16
825 828 9.771915 ATGTTTAAATTTGAGTTTTGCAAGTTG 57.228 25.926 0.00 0.00 0.00 3.16
826 829 8.233190 TGTTTAAATTTGAGTTTTGCAAGTTGG 58.767 29.630 4.75 0.00 0.00 3.77
828 831 9.436957 TTTAAATTTGAGTTTTGCAAGTTGGTA 57.563 25.926 4.75 0.00 0.00 3.25
829 832 9.606631 TTAAATTTGAGTTTTGCAAGTTGGTAT 57.393 25.926 4.75 0.00 0.00 2.73
830 833 7.713764 AATTTGAGTTTTGCAAGTTGGTATC 57.286 32.000 4.75 0.00 0.00 2.24
832 835 6.403866 TTGAGTTTTGCAAGTTGGTATCAT 57.596 33.333 4.75 0.00 0.00 2.45
833 836 5.771469 TGAGTTTTGCAAGTTGGTATCATG 58.229 37.500 4.75 0.00 0.00 3.07
834 837 5.138125 AGTTTTGCAAGTTGGTATCATGG 57.862 39.130 4.75 0.00 0.00 3.66
835 838 4.588528 AGTTTTGCAAGTTGGTATCATGGT 59.411 37.500 4.75 0.00 0.00 3.55
836 839 5.772672 AGTTTTGCAAGTTGGTATCATGGTA 59.227 36.000 4.75 0.00 0.00 3.25
837 840 6.437162 AGTTTTGCAAGTTGGTATCATGGTAT 59.563 34.615 4.75 0.00 0.00 2.73
838 841 6.449635 TTTGCAAGTTGGTATCATGGTATC 57.550 37.500 4.75 0.00 0.00 2.24
839 842 5.109500 TGCAAGTTGGTATCATGGTATCA 57.891 39.130 4.75 0.00 0.00 2.15
840 843 5.693961 TGCAAGTTGGTATCATGGTATCAT 58.306 37.500 0.00 0.00 0.00 2.45
855 858 7.755591 CATGGTATCATGTAAGCAATGGTATC 58.244 38.462 7.88 0.00 44.22 2.24
856 859 6.836242 TGGTATCATGTAAGCAATGGTATCA 58.164 36.000 0.00 0.00 0.00 2.15
857 860 6.710295 TGGTATCATGTAAGCAATGGTATCAC 59.290 38.462 0.00 0.00 0.00 3.06
858 861 6.149474 GGTATCATGTAAGCAATGGTATCACC 59.851 42.308 0.00 0.00 39.22 4.02
859 862 5.372343 TCATGTAAGCAATGGTATCACCT 57.628 39.130 0.00 0.00 39.58 4.00
860 863 5.754782 TCATGTAAGCAATGGTATCACCTT 58.245 37.500 0.00 0.00 39.58 3.50
861 864 6.186957 TCATGTAAGCAATGGTATCACCTTT 58.813 36.000 0.00 0.00 39.58 3.11
862 865 6.663093 TCATGTAAGCAATGGTATCACCTTTT 59.337 34.615 0.00 0.00 39.58 2.27
863 866 6.909550 TGTAAGCAATGGTATCACCTTTTT 57.090 33.333 0.00 0.00 39.58 1.94
885 888 2.925578 TTTTCGAGCATCAGCAATGG 57.074 45.000 1.83 0.00 45.49 3.16
887 890 2.689553 TTCGAGCATCAGCAATGGTA 57.310 45.000 4.07 0.00 45.93 3.25
888 891 2.916702 TCGAGCATCAGCAATGGTAT 57.083 45.000 4.07 0.00 45.93 2.73
889 892 2.759191 TCGAGCATCAGCAATGGTATC 58.241 47.619 4.07 0.00 45.93 2.24
890 893 2.102925 TCGAGCATCAGCAATGGTATCA 59.897 45.455 4.07 0.00 45.93 2.15
891 894 2.222678 CGAGCATCAGCAATGGTATCAC 59.777 50.000 4.07 0.00 45.93 3.06
892 895 2.551459 GAGCATCAGCAATGGTATCACC 59.449 50.000 4.07 0.00 45.93 4.02
893 896 2.174210 AGCATCAGCAATGGTATCACCT 59.826 45.455 2.35 0.00 44.17 4.00
894 897 2.292569 GCATCAGCAATGGTATCACCTG 59.707 50.000 0.00 0.00 38.96 4.00
895 898 3.812262 CATCAGCAATGGTATCACCTGA 58.188 45.455 5.58 5.58 39.58 3.86
896 899 4.395625 CATCAGCAATGGTATCACCTGAT 58.604 43.478 8.90 8.90 39.58 2.90
897 900 5.554070 CATCAGCAATGGTATCACCTGATA 58.446 41.667 12.63 0.00 39.58 2.15
898 901 8.000341 GCATCAGCAATGGTATCACCTGATAC 62.000 46.154 14.66 14.66 46.05 2.24
906 909 2.897823 ATCACCTGATACTTCCCCCT 57.102 50.000 0.00 0.00 32.01 4.79
907 910 2.176247 TCACCTGATACTTCCCCCTC 57.824 55.000 0.00 0.00 0.00 4.30
908 911 1.651770 TCACCTGATACTTCCCCCTCT 59.348 52.381 0.00 0.00 0.00 3.69
909 912 2.043227 CACCTGATACTTCCCCCTCTC 58.957 57.143 0.00 0.00 0.00 3.20
910 913 1.651770 ACCTGATACTTCCCCCTCTCA 59.348 52.381 0.00 0.00 0.00 3.27
911 914 2.045885 ACCTGATACTTCCCCCTCTCAA 59.954 50.000 0.00 0.00 0.00 3.02
912 915 2.436173 CCTGATACTTCCCCCTCTCAAC 59.564 54.545 0.00 0.00 0.00 3.18
913 916 3.107601 CTGATACTTCCCCCTCTCAACA 58.892 50.000 0.00 0.00 0.00 3.33
914 917 3.107601 TGATACTTCCCCCTCTCAACAG 58.892 50.000 0.00 0.00 0.00 3.16
915 918 1.952621 TACTTCCCCCTCTCAACAGG 58.047 55.000 0.00 0.00 0.00 4.00
916 919 1.301293 CTTCCCCCTCTCAACAGGC 59.699 63.158 0.00 0.00 31.23 4.85
928 931 3.152341 CTCAACAGGCTGACTTGGAATT 58.848 45.455 23.66 0.00 0.00 2.17
930 933 4.072131 TCAACAGGCTGACTTGGAATTAC 58.928 43.478 23.66 0.00 0.00 1.89
934 937 5.079643 ACAGGCTGACTTGGAATTACAAAT 58.920 37.500 23.66 0.00 0.00 2.32
936 939 5.865552 CAGGCTGACTTGGAATTACAAATTG 59.134 40.000 9.42 0.00 0.00 2.32
942 945 7.432869 TGACTTGGAATTACAAATTGTGGAAG 58.567 34.615 9.15 4.46 31.92 3.46
950 953 2.158475 ACAAATTGTGGAAGGGCAGAGA 60.158 45.455 0.00 0.00 0.00 3.10
951 954 2.892852 CAAATTGTGGAAGGGCAGAGAA 59.107 45.455 0.00 0.00 0.00 2.87
952 955 2.503895 ATTGTGGAAGGGCAGAGAAG 57.496 50.000 0.00 0.00 0.00 2.85
953 956 0.250901 TTGTGGAAGGGCAGAGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
1012 1381 0.922626 GAGCTCCCCCAATTCCTCTT 59.077 55.000 0.87 0.00 0.00 2.85
1200 1569 0.032615 CCTGCTCCTCCAGGTACTCT 60.033 60.000 0.10 0.00 45.87 3.24
1201 1570 1.110442 CTGCTCCTCCAGGTACTCTG 58.890 60.000 4.81 4.81 43.00 3.35
1202 1571 0.972983 TGCTCCTCCAGGTACTCTGC 60.973 60.000 5.98 0.00 42.05 4.26
1376 1746 2.959030 CCTCCTCGAGATTGACATACCA 59.041 50.000 15.71 0.00 0.00 3.25
1390 1760 1.210478 CATACCAGAGGAACACAGGGG 59.790 57.143 0.00 0.00 0.00 4.79
1469 1846 1.376553 GGCTCTGGTCTTCACTGCC 60.377 63.158 0.00 0.00 33.59 4.85
1482 1859 2.281761 CTGCCTGCGGGAACTGTT 60.282 61.111 18.31 0.00 36.83 3.16
1486 1863 1.071471 CCTGCGGGAACTGTTCAGT 59.929 57.895 21.01 0.00 36.83 3.41
1586 1969 0.392998 CCCATGGACTTGAGTTCCCG 60.393 60.000 15.22 0.00 0.00 5.14
1609 1992 3.827898 GGAGAGGCTGTCCGTCGG 61.828 72.222 15.65 4.39 37.47 4.79
1638 2021 1.215647 GCCTTCGACACGGATGAGT 59.784 57.895 0.00 0.00 0.00 3.41
1695 2078 3.112709 GCAACCGCTGTCGTCTCC 61.113 66.667 0.00 0.00 34.30 3.71
1697 2080 2.022129 CAACCGCTGTCGTCTCCAC 61.022 63.158 0.00 0.00 0.00 4.02
1715 2098 2.738846 CCACAAGATCAAAGTCCACTCG 59.261 50.000 0.00 0.00 0.00 4.18
1756 2139 3.112709 GAGCGACGACTGTTGGGC 61.113 66.667 0.00 2.86 0.00 5.36
1885 2268 2.126031 GGACTTCTCGTGCCCGTC 60.126 66.667 0.00 0.00 35.01 4.79
1996 2383 1.509463 GTCCGGTGCGTCATCTGTA 59.491 57.895 0.00 0.00 0.00 2.74
2003 2390 1.135257 GTGCGTCATCTGTACTGCTCT 60.135 52.381 0.00 0.00 0.00 4.09
2004 2391 2.097629 GTGCGTCATCTGTACTGCTCTA 59.902 50.000 0.00 0.00 0.00 2.43
2005 2392 2.952310 TGCGTCATCTGTACTGCTCTAT 59.048 45.455 0.00 0.00 0.00 1.98
2006 2393 4.023963 GTGCGTCATCTGTACTGCTCTATA 60.024 45.833 0.00 0.00 0.00 1.31
2075 3219 4.149747 GGTATGTTGCCAAATTGTTGTTCG 59.850 41.667 0.00 0.00 32.40 3.95
2242 3392 1.229428 CTTATGCACCATTCGCGGAT 58.771 50.000 6.13 0.00 0.00 4.18
2353 3503 4.098960 GTGGTGTCGAATCTACTTGGGATA 59.901 45.833 0.00 0.00 0.00 2.59
2390 3540 4.935808 AGAAGCTTAAGGTGGACATAAACG 59.064 41.667 8.16 0.00 0.00 3.60
2418 3568 3.997021 ACGGTAATTCTTCACTTCAGCTG 59.003 43.478 7.63 7.63 0.00 4.24
2439 3591 9.557061 CAGCTGCCTGATATATACATTTATGAT 57.443 33.333 0.00 0.00 41.77 2.45
2507 3688 8.774890 ATAAGTTAATTGCATTTGACATTGCA 57.225 26.923 15.81 8.96 46.51 4.08
2541 3725 7.697691 ACAAAGAATCAACAGTACTTCACTTG 58.302 34.615 0.00 0.00 34.26 3.16
2731 3915 6.071784 CCTCTGATGAAAACAATGACCATGAA 60.072 38.462 0.00 0.00 0.00 2.57
2782 3966 3.330701 AGAGGATGCAAGGAAACCTACAA 59.669 43.478 0.00 0.00 31.13 2.41
2999 4186 9.730420 GTTCAATTAACATGTTTACTGTTCTGT 57.270 29.630 17.78 0.00 37.89 3.41
3036 4224 7.465353 AATGTGTTGATGTGGATTAACATGA 57.535 32.000 0.00 0.00 39.49 3.07
3056 4244 7.972301 ACATGATTGGTTTTAAATTTCCCAGA 58.028 30.769 0.00 0.00 0.00 3.86
3099 4289 4.503643 CCTGCATGTTCCTTTGGTTGAATT 60.504 41.667 0.00 0.00 0.00 2.17
3106 4296 7.169158 TGTTCCTTTGGTTGAATTGATATCC 57.831 36.000 0.00 0.00 0.00 2.59
3109 4299 6.252233 TCCTTTGGTTGAATTGATATCCACA 58.748 36.000 0.00 0.00 0.00 4.17
3125 4315 4.613265 TCCACACCCCTATTGACTAGTA 57.387 45.455 0.00 0.00 0.00 1.82
3126 4316 4.284178 TCCACACCCCTATTGACTAGTAC 58.716 47.826 0.00 0.00 0.00 2.73
3137 4327 6.938030 CCTATTGACTAGTACTCCCTCTGTAG 59.062 46.154 0.00 0.00 0.00 2.74
3138 4328 5.775813 TTGACTAGTACTCCCTCTGTAGT 57.224 43.478 0.00 0.00 0.00 2.73
3140 4330 4.535294 TGACTAGTACTCCCTCTGTAGTGT 59.465 45.833 0.00 0.00 0.00 3.55
3143 4333 7.025520 ACTAGTACTCCCTCTGTAGTGTAAA 57.974 40.000 0.00 0.00 0.00 2.01
3145 4335 7.946776 ACTAGTACTCCCTCTGTAGTGTAAAAA 59.053 37.037 0.00 0.00 0.00 1.94
3169 4359 5.152623 TGTCTTACATTTGAGACAGAGGG 57.847 43.478 2.55 0.00 45.26 4.30
3170 4360 4.838423 TGTCTTACATTTGAGACAGAGGGA 59.162 41.667 2.55 0.00 45.26 4.20
3172 4362 5.046950 GTCTTACATTTGAGACAGAGGGAGT 60.047 44.000 0.00 0.00 41.45 3.85
3173 4363 3.692257 ACATTTGAGACAGAGGGAGTG 57.308 47.619 0.00 0.00 0.00 3.51
3179 4469 4.171878 TGAGACAGAGGGAGTGGTATAG 57.828 50.000 0.00 0.00 0.00 1.31
3184 4474 4.436079 ACAGAGGGAGTGGTATAGGTTTT 58.564 43.478 0.00 0.00 0.00 2.43
3185 4475 4.225267 ACAGAGGGAGTGGTATAGGTTTTG 59.775 45.833 0.00 0.00 0.00 2.44
3192 4482 5.883673 GGAGTGGTATAGGTTTTGCATTACA 59.116 40.000 0.00 0.00 0.00 2.41
3195 4485 9.116067 GAGTGGTATAGGTTTTGCATTACATAA 57.884 33.333 0.00 0.00 0.00 1.90
3253 4547 8.265055 CAGAGGTATATTTAGGTGAAGACCAAA 58.735 37.037 0.00 0.00 45.98 3.28
3297 4593 2.158310 TGACAGGACTCCAGGAGAGAAA 60.158 50.000 24.45 0.00 46.50 2.52
3338 4855 2.820787 CTCGACCACTTCCAAGACTACT 59.179 50.000 0.00 0.00 0.00 2.57
3339 4856 2.818432 TCGACCACTTCCAAGACTACTC 59.182 50.000 0.00 0.00 0.00 2.59
3340 4857 2.820787 CGACCACTTCCAAGACTACTCT 59.179 50.000 0.00 0.00 0.00 3.24
3341 4858 4.008330 CGACCACTTCCAAGACTACTCTA 58.992 47.826 0.00 0.00 0.00 2.43
3342 4859 4.142643 CGACCACTTCCAAGACTACTCTAC 60.143 50.000 0.00 0.00 0.00 2.59
3370 4887 3.530535 GCTGAAGAAGATCAAGAGGGAC 58.469 50.000 0.00 0.00 0.00 4.46
3416 4943 2.505407 CTCCCACCATGTTATCAGACCA 59.495 50.000 0.00 0.00 0.00 4.02
3417 4944 2.916269 TCCCACCATGTTATCAGACCAA 59.084 45.455 0.00 0.00 0.00 3.67
3466 4995 9.934190 GTTTGTGATTCTAATTGCAACAAAATT 57.066 25.926 0.00 0.00 0.00 1.82
3479 5008 9.934190 ATTGCAACAAAATTTATTCTTGTTCAC 57.066 25.926 0.00 0.75 40.40 3.18
3494 5023 6.323197 CTTGTTCACAAGTTTGAGCTTTTC 57.677 37.500 11.00 0.00 46.11 2.29
3496 5025 6.751514 TGTTCACAAGTTTGAGCTTTTCTA 57.248 33.333 0.00 0.00 0.00 2.10
3499 5028 7.540745 TGTTCACAAGTTTGAGCTTTTCTAAAC 59.459 33.333 0.00 0.00 34.21 2.01
3540 5078 2.225142 TGGAGTAACAGAGTCCTGAGCT 60.225 50.000 0.00 0.00 46.77 4.09
3541 5079 2.829120 GGAGTAACAGAGTCCTGAGCTT 59.171 50.000 0.00 0.00 43.64 3.74
3542 5080 3.119280 GGAGTAACAGAGTCCTGAGCTTC 60.119 52.174 0.00 0.00 43.64 3.86
3543 5081 2.829120 AGTAACAGAGTCCTGAGCTTCC 59.171 50.000 0.00 0.00 43.02 3.46
3544 5082 2.022718 AACAGAGTCCTGAGCTTCCT 57.977 50.000 0.00 0.00 43.02 3.36
3545 5083 2.022718 ACAGAGTCCTGAGCTTCCTT 57.977 50.000 0.00 0.00 43.02 3.36
3546 5084 2.334023 ACAGAGTCCTGAGCTTCCTTT 58.666 47.619 0.00 0.00 43.02 3.11
3547 5085 2.038295 ACAGAGTCCTGAGCTTCCTTTG 59.962 50.000 0.00 0.00 43.02 2.77
3548 5086 1.627834 AGAGTCCTGAGCTTCCTTTGG 59.372 52.381 0.00 0.00 0.00 3.28
3549 5087 1.625818 GAGTCCTGAGCTTCCTTTGGA 59.374 52.381 0.00 0.00 0.00 3.53
3550 5088 1.349357 AGTCCTGAGCTTCCTTTGGAC 59.651 52.381 0.00 0.00 40.73 4.02
3551 5089 1.072331 GTCCTGAGCTTCCTTTGGACA 59.928 52.381 0.00 0.00 40.43 4.02
3552 5090 1.349026 TCCTGAGCTTCCTTTGGACAG 59.651 52.381 0.00 0.00 0.00 3.51
3553 5091 1.163554 CTGAGCTTCCTTTGGACAGC 58.836 55.000 10.56 10.56 36.68 4.40
3617 5155 2.333291 TGCACTGCACTGGTTGATG 58.667 52.632 0.00 0.00 31.71 3.07
3650 5188 4.900635 AACACTAACAAGGCTCTGTTTG 57.099 40.909 16.37 16.18 40.08 2.93
3758 5384 4.989797 TGTTGTTTGCATGTTCATGGAATC 59.010 37.500 17.49 16.59 32.06 2.52
3771 5397 0.266453 TGGAATCGGGGGATGGAGTA 59.734 55.000 0.00 0.00 0.00 2.59
3773 5399 1.348036 GGAATCGGGGGATGGAGTAAG 59.652 57.143 0.00 0.00 0.00 2.34
3774 5400 1.348036 GAATCGGGGGATGGAGTAAGG 59.652 57.143 0.00 0.00 0.00 2.69
3790 5416 5.163195 GGAGTAAGGGAGAATAGCCAATTCA 60.163 44.000 10.95 0.00 45.58 2.57
3791 5417 6.466470 GGAGTAAGGGAGAATAGCCAATTCAT 60.466 42.308 10.95 0.00 45.58 2.57
3799 5425 6.127786 GGAGAATAGCCAATTCATATTCCTGC 60.128 42.308 10.95 0.00 45.58 4.85
3800 5426 5.713861 AGAATAGCCAATTCATATTCCTGCC 59.286 40.000 10.95 0.00 45.58 4.85
3809 5435 5.645056 TTCATATTCCTGCCTGGATGTAA 57.355 39.130 0.00 0.00 45.68 2.41
3810 5436 4.973168 TCATATTCCTGCCTGGATGTAAC 58.027 43.478 0.00 0.00 45.68 2.50
3858 5484 8.506168 AAAAGTGTTTGAAGATTGTAGAGTGA 57.494 30.769 0.00 0.00 0.00 3.41
3875 5502 7.882791 TGTAGAGTGATGTACATGTTTGGAATT 59.117 33.333 14.43 0.00 0.00 2.17
3909 5537 9.745323 CACAACAGTGCATATATTATTACGATG 57.255 33.333 0.00 0.00 0.00 3.84
3910 5538 9.705290 ACAACAGTGCATATATTATTACGATGA 57.295 29.630 0.00 0.00 0.00 2.92
3911 5539 9.958285 CAACAGTGCATATATTATTACGATGAC 57.042 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.738847 AGAACACCCAAAAAGATGATGAAATT 58.261 30.769 0.00 0.00 0.00 1.82
77 78 5.683876 TTCTTTGGGATGTTGTTTTTCCA 57.316 34.783 0.00 0.00 0.00 3.53
78 79 6.456315 CGTTTTCTTTGGGATGTTGTTTTTCC 60.456 38.462 0.00 0.00 0.00 3.13
79 80 6.456315 CCGTTTTCTTTGGGATGTTGTTTTTC 60.456 38.462 0.00 0.00 0.00 2.29
94 95 4.092821 GCACTTCTTTTTGCCGTTTTCTTT 59.907 37.500 0.00 0.00 32.21 2.52
103 104 0.951558 TCTCCGCACTTCTTTTTGCC 59.048 50.000 0.00 0.00 35.14 4.52
110 111 1.460504 TATCGTGTCTCCGCACTTCT 58.539 50.000 0.00 0.00 37.24 2.85
112 113 2.735134 GTTTTATCGTGTCTCCGCACTT 59.265 45.455 0.00 0.00 37.24 3.16
118 119 2.265683 GTCGGGTTTTATCGTGTCTCC 58.734 52.381 0.00 0.00 0.00 3.71
119 120 2.950433 TGTCGGGTTTTATCGTGTCTC 58.050 47.619 0.00 0.00 0.00 3.36
120 121 3.389925 TTGTCGGGTTTTATCGTGTCT 57.610 42.857 0.00 0.00 0.00 3.41
125 126 2.081462 AGGCTTTGTCGGGTTTTATCG 58.919 47.619 0.00 0.00 0.00 2.92
147 148 7.624360 TTATCCTTTGTTTGTGCCTACATAG 57.376 36.000 0.00 0.00 36.53 2.23
150 151 6.716934 TTTTATCCTTTGTTTGTGCCTACA 57.283 33.333 0.00 0.00 34.31 2.74
171 174 8.408043 TCATGAGTCCAAACTATGTGATTTTT 57.592 30.769 0.00 0.00 35.28 1.94
174 177 7.571919 AGATCATGAGTCCAAACTATGTGATT 58.428 34.615 0.09 0.00 35.28 2.57
183 186 5.453480 GGGGTAGTAGATCATGAGTCCAAAC 60.453 48.000 0.09 0.00 0.00 2.93
195 198 3.048563 GGGACGGGGGTAGTAGATC 57.951 63.158 0.00 0.00 0.00 2.75
222 225 4.572175 TGGCACAAATTACAAAGGGGACC 61.572 47.826 0.00 0.00 45.14 4.46
223 226 2.630580 TGGCACAAATTACAAAGGGGAC 59.369 45.455 0.00 0.00 31.92 4.46
224 227 2.964209 TGGCACAAATTACAAAGGGGA 58.036 42.857 0.00 0.00 31.92 4.81
232 235 8.134261 ATTTGGTCAAAAATTGGCACAAATTAC 58.866 29.630 13.46 0.00 40.17 1.89
233 236 8.230472 ATTTGGTCAAAAATTGGCACAAATTA 57.770 26.923 13.46 0.00 40.17 1.40
234 237 7.110043 ATTTGGTCAAAAATTGGCACAAATT 57.890 28.000 13.46 0.00 40.17 1.82
235 238 6.712179 ATTTGGTCAAAAATTGGCACAAAT 57.288 29.167 13.46 13.46 39.27 2.32
236 239 7.814264 ATATTTGGTCAAAAATTGGCACAAA 57.186 28.000 11.12 11.12 38.66 2.83
237 240 7.814264 AATATTTGGTCAAAAATTGGCACAA 57.186 28.000 0.00 0.00 37.40 3.33
238 241 7.814264 AAATATTTGGTCAAAAATTGGCACA 57.186 28.000 0.00 0.00 36.88 4.57
239 242 9.605955 GTTAAATATTTGGTCAAAAATTGGCAC 57.394 29.630 11.05 0.00 36.88 5.01
240 243 9.566432 AGTTAAATATTTGGTCAAAAATTGGCA 57.434 25.926 11.05 0.00 36.88 4.92
296 299 9.483916 TGTTCAAATACGAATCCAACGATATAT 57.516 29.630 0.00 0.00 34.70 0.86
297 300 8.874744 TGTTCAAATACGAATCCAACGATATA 57.125 30.769 0.00 0.00 34.70 0.86
298 301 7.780008 TGTTCAAATACGAATCCAACGATAT 57.220 32.000 0.00 0.00 34.70 1.63
299 302 7.780008 ATGTTCAAATACGAATCCAACGATA 57.220 32.000 0.00 0.00 34.70 2.92
300 303 6.677781 ATGTTCAAATACGAATCCAACGAT 57.322 33.333 0.00 0.00 34.70 3.73
301 304 6.814644 ACTATGTTCAAATACGAATCCAACGA 59.185 34.615 0.00 0.00 34.70 3.85
302 305 7.000575 ACTATGTTCAAATACGAATCCAACG 57.999 36.000 0.00 0.00 0.00 4.10
303 306 9.274065 GAAACTATGTTCAAATACGAATCCAAC 57.726 33.333 0.00 0.00 0.00 3.77
304 307 8.455682 GGAAACTATGTTCAAATACGAATCCAA 58.544 33.333 0.00 0.00 0.00 3.53
305 308 7.608376 TGGAAACTATGTTCAAATACGAATCCA 59.392 33.333 0.00 0.00 0.00 3.41
306 309 7.981142 TGGAAACTATGTTCAAATACGAATCC 58.019 34.615 0.00 0.00 0.00 3.01
308 311 9.787532 CATTGGAAACTATGTTCAAATACGAAT 57.212 29.630 0.00 0.00 38.53 3.34
309 312 9.004717 TCATTGGAAACTATGTTCAAATACGAA 57.995 29.630 0.00 0.00 43.01 3.85
310 313 8.554835 TCATTGGAAACTATGTTCAAATACGA 57.445 30.769 0.00 0.00 43.01 3.43
385 388 9.866936 CCTCATTGTATTTTGTGTCAAATTTTG 57.133 29.630 2.59 2.59 0.00 2.44
386 389 9.829507 TCCTCATTGTATTTTGTGTCAAATTTT 57.170 25.926 0.00 0.00 0.00 1.82
388 391 9.643693 GATCCTCATTGTATTTTGTGTCAAATT 57.356 29.630 0.00 0.00 0.00 1.82
389 392 8.805175 TGATCCTCATTGTATTTTGTGTCAAAT 58.195 29.630 0.00 0.00 0.00 2.32
390 393 8.175925 TGATCCTCATTGTATTTTGTGTCAAA 57.824 30.769 0.00 0.00 0.00 2.69
391 394 7.757941 TGATCCTCATTGTATTTTGTGTCAA 57.242 32.000 0.00 0.00 0.00 3.18
392 395 7.757941 TTGATCCTCATTGTATTTTGTGTCA 57.242 32.000 0.00 0.00 0.00 3.58
400 403 9.699410 TCTTGGTTTATTGATCCTCATTGTATT 57.301 29.630 0.00 0.00 0.00 1.89
401 404 9.125026 GTCTTGGTTTATTGATCCTCATTGTAT 57.875 33.333 0.00 0.00 0.00 2.29
402 405 7.279981 CGTCTTGGTTTATTGATCCTCATTGTA 59.720 37.037 0.00 0.00 0.00 2.41
403 406 6.094048 CGTCTTGGTTTATTGATCCTCATTGT 59.906 38.462 0.00 0.00 0.00 2.71
404 407 6.316140 TCGTCTTGGTTTATTGATCCTCATTG 59.684 38.462 0.00 0.00 0.00 2.82
405 408 6.414732 TCGTCTTGGTTTATTGATCCTCATT 58.585 36.000 0.00 0.00 0.00 2.57
406 409 5.989477 TCGTCTTGGTTTATTGATCCTCAT 58.011 37.500 0.00 0.00 0.00 2.90
407 410 5.414789 TCGTCTTGGTTTATTGATCCTCA 57.585 39.130 0.00 0.00 0.00 3.86
408 411 6.316390 ACATTCGTCTTGGTTTATTGATCCTC 59.684 38.462 0.00 0.00 0.00 3.71
409 412 6.180472 ACATTCGTCTTGGTTTATTGATCCT 58.820 36.000 0.00 0.00 0.00 3.24
410 413 6.436843 ACATTCGTCTTGGTTTATTGATCC 57.563 37.500 0.00 0.00 0.00 3.36
411 414 8.197988 ACTACATTCGTCTTGGTTTATTGATC 57.802 34.615 0.00 0.00 0.00 2.92
412 415 9.661563 TTACTACATTCGTCTTGGTTTATTGAT 57.338 29.630 0.00 0.00 0.00 2.57
413 416 8.928733 GTTACTACATTCGTCTTGGTTTATTGA 58.071 33.333 0.00 0.00 0.00 2.57
414 417 8.932791 AGTTACTACATTCGTCTTGGTTTATTG 58.067 33.333 0.00 0.00 0.00 1.90
415 418 9.148104 GAGTTACTACATTCGTCTTGGTTTATT 57.852 33.333 0.00 0.00 0.00 1.40
416 419 8.529476 AGAGTTACTACATTCGTCTTGGTTTAT 58.471 33.333 0.00 0.00 0.00 1.40
417 420 7.889469 AGAGTTACTACATTCGTCTTGGTTTA 58.111 34.615 0.00 0.00 0.00 2.01
418 421 6.756221 AGAGTTACTACATTCGTCTTGGTTT 58.244 36.000 0.00 0.00 0.00 3.27
419 422 6.015688 TGAGAGTTACTACATTCGTCTTGGTT 60.016 38.462 0.00 0.00 0.00 3.67
420 423 5.475909 TGAGAGTTACTACATTCGTCTTGGT 59.524 40.000 0.00 0.00 0.00 3.67
421 424 5.950883 TGAGAGTTACTACATTCGTCTTGG 58.049 41.667 0.00 0.00 0.00 3.61
422 425 6.861572 TGTTGAGAGTTACTACATTCGTCTTG 59.138 38.462 0.00 0.00 0.00 3.02
423 426 6.978338 TGTTGAGAGTTACTACATTCGTCTT 58.022 36.000 0.00 0.00 0.00 3.01
424 427 6.349445 CCTGTTGAGAGTTACTACATTCGTCT 60.349 42.308 0.00 0.00 0.00 4.18
425 428 5.800941 CCTGTTGAGAGTTACTACATTCGTC 59.199 44.000 0.00 0.00 0.00 4.20
426 429 5.336531 CCCTGTTGAGAGTTACTACATTCGT 60.337 44.000 0.00 0.00 0.00 3.85
427 430 5.103000 CCCTGTTGAGAGTTACTACATTCG 58.897 45.833 0.00 0.00 0.00 3.34
428 431 6.282199 TCCCTGTTGAGAGTTACTACATTC 57.718 41.667 0.00 0.00 0.00 2.67
429 432 6.681729 TTCCCTGTTGAGAGTTACTACATT 57.318 37.500 0.00 0.00 0.00 2.71
430 433 6.681729 TTTCCCTGTTGAGAGTTACTACAT 57.318 37.500 0.00 0.00 0.00 2.29
431 434 6.488769 TTTTCCCTGTTGAGAGTTACTACA 57.511 37.500 0.00 0.00 0.00 2.74
432 435 7.981102 ATTTTTCCCTGTTGAGAGTTACTAC 57.019 36.000 0.00 0.00 0.00 2.73
433 436 9.886132 GATATTTTTCCCTGTTGAGAGTTACTA 57.114 33.333 0.00 0.00 0.00 1.82
434 437 8.383175 TGATATTTTTCCCTGTTGAGAGTTACT 58.617 33.333 0.00 0.00 0.00 2.24
435 438 8.561738 TGATATTTTTCCCTGTTGAGAGTTAC 57.438 34.615 0.00 0.00 0.00 2.50
436 439 7.829211 CCTGATATTTTTCCCTGTTGAGAGTTA 59.171 37.037 0.00 0.00 0.00 2.24
448 451 6.365520 ACTGGTATCACCTGATATTTTTCCC 58.634 40.000 8.97 0.00 39.29 3.97
450 453 7.283329 AGGACTGGTATCACCTGATATTTTTC 58.717 38.462 8.97 0.00 39.29 2.29
451 454 7.213178 AGGACTGGTATCACCTGATATTTTT 57.787 36.000 8.97 0.00 39.29 1.94
453 456 6.831664 AAGGACTGGTATCACCTGATATTT 57.168 37.500 8.97 0.00 39.29 1.40
454 457 7.306013 TCTAAGGACTGGTATCACCTGATATT 58.694 38.462 8.97 3.59 39.29 1.28
455 458 6.864421 TCTAAGGACTGGTATCACCTGATAT 58.136 40.000 8.97 0.00 39.29 1.63
456 459 6.275692 TCTAAGGACTGGTATCACCTGATA 57.724 41.667 8.97 0.00 39.29 2.15
460 463 5.144159 TCATCTAAGGACTGGTATCACCT 57.856 43.478 0.00 0.00 39.58 4.00
462 465 6.493802 TGGTATCATCTAAGGACTGGTATCAC 59.506 42.308 0.00 0.00 0.00 3.06
464 467 7.397476 TCATGGTATCATCTAAGGACTGGTATC 59.603 40.741 0.00 0.00 0.00 2.24
465 468 7.248976 TCATGGTATCATCTAAGGACTGGTAT 58.751 38.462 0.00 0.00 0.00 2.73
468 471 6.617782 ATCATGGTATCATCTAAGGACTGG 57.382 41.667 0.00 0.00 0.00 4.00
469 472 7.179160 TGGTATCATGGTATCATCTAAGGACTG 59.821 40.741 0.00 0.00 0.00 3.51
470 473 7.248976 TGGTATCATGGTATCATCTAAGGACT 58.751 38.462 0.00 0.00 0.00 3.85
471 474 7.482169 TGGTATCATGGTATCATCTAAGGAC 57.518 40.000 0.00 0.00 0.00 3.85
472 475 7.734865 AGTTGGTATCATGGTATCATCTAAGGA 59.265 37.037 7.89 0.00 0.00 3.36
473 476 7.911651 AGTTGGTATCATGGTATCATCTAAGG 58.088 38.462 7.89 0.00 0.00 2.69
474 477 9.212641 CAAGTTGGTATCATGGTATCATCTAAG 57.787 37.037 9.73 3.66 0.00 2.18
475 478 7.661437 GCAAGTTGGTATCATGGTATCATCTAA 59.339 37.037 9.73 0.00 0.00 2.10
476 479 7.161404 GCAAGTTGGTATCATGGTATCATCTA 58.839 38.462 9.73 0.00 0.00 1.98
477 480 6.000219 GCAAGTTGGTATCATGGTATCATCT 59.000 40.000 0.00 1.74 0.00 2.90
478 481 5.764686 TGCAAGTTGGTATCATGGTATCATC 59.235 40.000 0.00 0.00 0.00 2.92
479 482 5.693961 TGCAAGTTGGTATCATGGTATCAT 58.306 37.500 0.00 0.00 0.00 2.45
480 483 5.109500 TGCAAGTTGGTATCATGGTATCA 57.891 39.130 4.75 0.00 0.00 2.15
481 484 6.449635 TTTGCAAGTTGGTATCATGGTATC 57.550 37.500 4.75 0.00 0.00 2.24
482 485 6.437162 AGTTTTGCAAGTTGGTATCATGGTAT 59.563 34.615 4.75 0.00 0.00 2.73
483 486 5.772672 AGTTTTGCAAGTTGGTATCATGGTA 59.227 36.000 4.75 0.00 0.00 3.25
484 487 4.588528 AGTTTTGCAAGTTGGTATCATGGT 59.411 37.500 4.75 0.00 0.00 3.55
485 488 5.138125 AGTTTTGCAAGTTGGTATCATGG 57.862 39.130 4.75 0.00 0.00 3.66
486 489 5.771469 TGAGTTTTGCAAGTTGGTATCATG 58.229 37.500 4.75 0.00 0.00 3.07
487 490 6.403866 TTGAGTTTTGCAAGTTGGTATCAT 57.596 33.333 4.75 0.00 0.00 2.45
488 491 5.843673 TTGAGTTTTGCAAGTTGGTATCA 57.156 34.783 4.75 0.00 0.00 2.15
489 492 7.713764 AATTTGAGTTTTGCAAGTTGGTATC 57.286 32.000 4.75 0.00 0.00 2.24
490 493 9.606631 TTAAATTTGAGTTTTGCAAGTTGGTAT 57.393 25.926 4.75 0.00 0.00 2.73
491 494 9.436957 TTTAAATTTGAGTTTTGCAAGTTGGTA 57.563 25.926 4.75 0.00 0.00 3.25
492 495 7.913674 TTAAATTTGAGTTTTGCAAGTTGGT 57.086 28.000 4.75 0.00 0.00 3.67
493 496 8.233190 TGTTTAAATTTGAGTTTTGCAAGTTGG 58.767 29.630 4.75 0.00 0.00 3.77
494 497 9.771915 ATGTTTAAATTTGAGTTTTGCAAGTTG 57.228 25.926 0.00 0.00 0.00 3.16
495 498 9.771915 CATGTTTAAATTTGAGTTTTGCAAGTT 57.228 25.926 0.00 0.00 0.00 2.66
496 499 8.945057 ACATGTTTAAATTTGAGTTTTGCAAGT 58.055 25.926 0.00 0.00 0.00 3.16
497 500 9.424659 GACATGTTTAAATTTGAGTTTTGCAAG 57.575 29.630 0.00 0.00 0.00 4.01
498 501 8.939929 TGACATGTTTAAATTTGAGTTTTGCAA 58.060 25.926 0.00 0.00 0.00 4.08
499 502 8.484641 TGACATGTTTAAATTTGAGTTTTGCA 57.515 26.923 0.00 0.00 0.00 4.08
500 503 9.766277 TTTGACATGTTTAAATTTGAGTTTTGC 57.234 25.926 0.00 0.00 0.00 3.68
539 542 9.358406 ACATATGTATTGTGAACATCCATGATT 57.642 29.630 6.56 0.00 38.49 2.57
540 543 8.929260 ACATATGTATTGTGAACATCCATGAT 57.071 30.769 6.56 0.00 38.49 2.45
541 544 7.171337 CGACATATGTATTGTGAACATCCATGA 59.829 37.037 8.71 0.00 38.49 3.07
542 545 7.171337 TCGACATATGTATTGTGAACATCCATG 59.829 37.037 8.71 0.00 38.49 3.66
543 546 7.171508 GTCGACATATGTATTGTGAACATCCAT 59.828 37.037 11.55 0.00 38.49 3.41
544 547 6.478673 GTCGACATATGTATTGTGAACATCCA 59.521 38.462 11.55 0.00 38.49 3.41
545 548 6.478673 TGTCGACATATGTATTGTGAACATCC 59.521 38.462 15.76 0.00 38.49 3.51
546 549 7.463469 TGTCGACATATGTATTGTGAACATC 57.537 36.000 15.76 0.00 38.49 3.06
547 550 7.201609 GGTTGTCGACATATGTATTGTGAACAT 60.202 37.037 20.80 0.00 40.57 2.71
548 551 6.091577 GGTTGTCGACATATGTATTGTGAACA 59.908 38.462 20.80 3.28 0.00 3.18
549 552 6.456449 GGGTTGTCGACATATGTATTGTGAAC 60.456 42.308 20.80 9.27 0.00 3.18
550 553 5.583061 GGGTTGTCGACATATGTATTGTGAA 59.417 40.000 20.80 0.00 0.00 3.18
551 554 5.113383 GGGTTGTCGACATATGTATTGTGA 58.887 41.667 20.80 0.00 0.00 3.58
552 555 4.272504 GGGGTTGTCGACATATGTATTGTG 59.727 45.833 20.80 0.00 0.00 3.33
553 556 4.163458 AGGGGTTGTCGACATATGTATTGT 59.837 41.667 20.80 0.00 0.00 2.71
554 557 4.703897 AGGGGTTGTCGACATATGTATTG 58.296 43.478 20.80 2.10 0.00 1.90
555 558 6.488769 TTAGGGGTTGTCGACATATGTATT 57.511 37.500 20.80 5.04 0.00 1.89
556 559 6.488769 TTTAGGGGTTGTCGACATATGTAT 57.511 37.500 20.80 6.98 0.00 2.29
557 560 5.936187 TTTAGGGGTTGTCGACATATGTA 57.064 39.130 20.80 0.00 0.00 2.29
558 561 4.829872 TTTAGGGGTTGTCGACATATGT 57.170 40.909 20.80 8.43 0.00 2.29
584 587 9.102757 CCTTCTCTATTTCGAATTTTGATCTGA 57.897 33.333 0.00 0.00 0.00 3.27
585 588 9.102757 TCCTTCTCTATTTCGAATTTTGATCTG 57.897 33.333 0.00 0.00 0.00 2.90
586 589 9.323985 CTCCTTCTCTATTTCGAATTTTGATCT 57.676 33.333 0.00 0.00 0.00 2.75
587 590 9.319143 TCTCCTTCTCTATTTCGAATTTTGATC 57.681 33.333 0.00 0.00 0.00 2.92
588 591 9.672673 TTCTCCTTCTCTATTTCGAATTTTGAT 57.327 29.630 0.00 0.00 0.00 2.57
589 592 9.502091 TTTCTCCTTCTCTATTTCGAATTTTGA 57.498 29.630 0.00 0.00 0.00 2.69
590 593 9.766277 CTTTCTCCTTCTCTATTTCGAATTTTG 57.234 33.333 0.00 0.00 0.00 2.44
591 594 9.726438 TCTTTCTCCTTCTCTATTTCGAATTTT 57.274 29.630 0.00 0.00 0.00 1.82
592 595 9.726438 TTCTTTCTCCTTCTCTATTTCGAATTT 57.274 29.630 0.00 0.00 0.00 1.82
593 596 9.726438 TTTCTTTCTCCTTCTCTATTTCGAATT 57.274 29.630 0.00 0.00 0.00 2.17
594 597 9.726438 TTTTCTTTCTCCTTCTCTATTTCGAAT 57.274 29.630 0.00 0.00 0.00 3.34
595 598 9.555727 TTTTTCTTTCTCCTTCTCTATTTCGAA 57.444 29.630 0.00 0.00 0.00 3.71
620 623 9.048446 CACTTTTCATGATGGATTTGTCTTTTT 57.952 29.630 0.00 0.00 0.00 1.94
621 624 8.206189 ACACTTTTCATGATGGATTTGTCTTTT 58.794 29.630 0.00 0.00 0.00 2.27
622 625 7.729116 ACACTTTTCATGATGGATTTGTCTTT 58.271 30.769 0.00 0.00 0.00 2.52
623 626 7.014518 TGACACTTTTCATGATGGATTTGTCTT 59.985 33.333 16.89 0.00 32.63 3.01
624 627 6.491062 TGACACTTTTCATGATGGATTTGTCT 59.509 34.615 16.89 0.00 32.63 3.41
625 628 6.680810 TGACACTTTTCATGATGGATTTGTC 58.319 36.000 0.00 6.06 0.00 3.18
626 629 6.653526 TGACACTTTTCATGATGGATTTGT 57.346 33.333 0.00 0.00 0.00 2.83
627 630 7.949903 TTTGACACTTTTCATGATGGATTTG 57.050 32.000 0.00 0.00 0.00 2.32
628 631 8.423349 TCTTTTGACACTTTTCATGATGGATTT 58.577 29.630 0.00 0.00 0.00 2.17
629 632 7.954835 TCTTTTGACACTTTTCATGATGGATT 58.045 30.769 0.00 0.00 0.00 3.01
630 633 7.528996 TCTTTTGACACTTTTCATGATGGAT 57.471 32.000 0.00 0.00 0.00 3.41
631 634 6.957920 TCTTTTGACACTTTTCATGATGGA 57.042 33.333 0.00 0.00 0.00 3.41
632 635 7.380602 GTCTTCTTTTGACACTTTTCATGATGG 59.619 37.037 0.00 0.00 34.80 3.51
633 636 7.916977 TGTCTTCTTTTGACACTTTTCATGATG 59.083 33.333 0.00 0.00 39.23 3.07
634 637 7.999679 TGTCTTCTTTTGACACTTTTCATGAT 58.000 30.769 0.00 0.00 39.23 2.45
635 638 7.389803 TGTCTTCTTTTGACACTTTTCATGA 57.610 32.000 0.00 0.00 39.23 3.07
636 639 8.464770 TTTGTCTTCTTTTGACACTTTTCATG 57.535 30.769 0.00 0.00 43.13 3.07
637 640 9.143631 CTTTTGTCTTCTTTTGACACTTTTCAT 57.856 29.630 0.00 0.00 43.13 2.57
638 641 8.141268 ACTTTTGTCTTCTTTTGACACTTTTCA 58.859 29.630 0.00 0.00 43.13 2.69
639 642 8.520835 ACTTTTGTCTTCTTTTGACACTTTTC 57.479 30.769 0.00 0.00 43.13 2.29
640 643 8.887036 AACTTTTGTCTTCTTTTGACACTTTT 57.113 26.923 0.00 0.00 43.13 2.27
641 644 9.626045 CTAACTTTTGTCTTCTTTTGACACTTT 57.374 29.630 0.00 0.00 43.13 2.66
642 645 9.010029 TCTAACTTTTGTCTTCTTTTGACACTT 57.990 29.630 0.00 0.00 43.13 3.16
643 646 8.561738 TCTAACTTTTGTCTTCTTTTGACACT 57.438 30.769 0.00 0.00 43.13 3.55
644 647 9.788960 ATTCTAACTTTTGTCTTCTTTTGACAC 57.211 29.630 0.00 0.00 43.13 3.67
645 648 9.787532 CATTCTAACTTTTGTCTTCTTTTGACA 57.212 29.630 0.00 0.00 41.94 3.58
646 649 8.746751 GCATTCTAACTTTTGTCTTCTTTTGAC 58.253 33.333 0.00 0.00 35.21 3.18
647 650 7.920682 GGCATTCTAACTTTTGTCTTCTTTTGA 59.079 33.333 0.00 0.00 0.00 2.69
648 651 7.706179 TGGCATTCTAACTTTTGTCTTCTTTTG 59.294 33.333 0.00 0.00 0.00 2.44
649 652 7.706607 GTGGCATTCTAACTTTTGTCTTCTTTT 59.293 33.333 0.00 0.00 0.00 2.27
650 653 7.068716 AGTGGCATTCTAACTTTTGTCTTCTTT 59.931 33.333 0.00 0.00 0.00 2.52
651 654 6.547510 AGTGGCATTCTAACTTTTGTCTTCTT 59.452 34.615 0.00 0.00 0.00 2.52
652 655 6.064717 AGTGGCATTCTAACTTTTGTCTTCT 58.935 36.000 0.00 0.00 0.00 2.85
653 656 6.319141 AGTGGCATTCTAACTTTTGTCTTC 57.681 37.500 0.00 0.00 0.00 2.87
654 657 8.409358 AATAGTGGCATTCTAACTTTTGTCTT 57.591 30.769 0.00 0.00 0.00 3.01
655 658 7.665559 TGAATAGTGGCATTCTAACTTTTGTCT 59.334 33.333 0.00 0.00 36.16 3.41
656 659 7.750903 GTGAATAGTGGCATTCTAACTTTTGTC 59.249 37.037 0.00 0.00 36.16 3.18
657 660 7.230510 TGTGAATAGTGGCATTCTAACTTTTGT 59.769 33.333 0.00 0.00 36.16 2.83
658 661 7.592938 TGTGAATAGTGGCATTCTAACTTTTG 58.407 34.615 0.00 0.00 36.16 2.44
659 662 7.759489 TGTGAATAGTGGCATTCTAACTTTT 57.241 32.000 0.00 0.00 36.16 2.27
660 663 7.944729 ATGTGAATAGTGGCATTCTAACTTT 57.055 32.000 0.00 0.00 36.16 2.66
661 664 9.060347 CATATGTGAATAGTGGCATTCTAACTT 57.940 33.333 0.00 0.00 36.16 2.66
662 665 8.432013 TCATATGTGAATAGTGGCATTCTAACT 58.568 33.333 1.90 0.00 36.16 2.24
663 666 8.607441 TCATATGTGAATAGTGGCATTCTAAC 57.393 34.615 1.90 0.00 36.16 2.34
701 704 9.796120 AAAATTCGAAATACACAAAGAGAAACA 57.204 25.926 0.00 0.00 0.00 2.83
705 708 9.825972 GATCAAAATTCGAAATACACAAAGAGA 57.174 29.630 0.00 0.00 0.00 3.10
706 709 9.831737 AGATCAAAATTCGAAATACACAAAGAG 57.168 29.630 0.00 0.00 0.00 2.85
708 711 9.611284 TCAGATCAAAATTCGAAATACACAAAG 57.389 29.630 0.00 0.00 0.00 2.77
737 740 5.413213 CACATATGTCGACAACCCCTAAAAA 59.587 40.000 24.13 0.00 0.00 1.94
738 741 4.938832 CACATATGTCGACAACCCCTAAAA 59.061 41.667 24.13 0.00 0.00 1.52
739 742 4.020039 ACACATATGTCGACAACCCCTAAA 60.020 41.667 24.13 0.00 31.55 1.85
740 743 3.516300 ACACATATGTCGACAACCCCTAA 59.484 43.478 24.13 2.71 31.55 2.69
741 744 3.101437 ACACATATGTCGACAACCCCTA 58.899 45.455 24.13 10.40 31.55 3.53
742 745 1.906574 ACACATATGTCGACAACCCCT 59.093 47.619 24.13 8.19 31.55 4.79
743 746 2.396590 ACACATATGTCGACAACCCC 57.603 50.000 24.13 0.00 31.55 4.95
744 747 3.071479 ACAACACATATGTCGACAACCC 58.929 45.455 24.13 0.00 38.45 4.11
745 748 3.743911 TCACAACACATATGTCGACAACC 59.256 43.478 24.13 0.00 38.45 3.77
746 749 4.983215 TCACAACACATATGTCGACAAC 57.017 40.909 24.13 0.00 38.45 3.32
748 751 4.372656 TGTTCACAACACATATGTCGACA 58.627 39.130 22.48 22.48 38.45 4.35
749 752 4.983215 TGTTCACAACACATATGTCGAC 57.017 40.909 9.11 9.11 38.45 4.20
750 753 5.478407 AGATGTTCACAACACATATGTCGA 58.522 37.500 5.07 0.00 45.50 4.20
751 754 5.784750 AGATGTTCACAACACATATGTCG 57.215 39.130 5.07 4.65 45.50 4.35
793 796 9.766277 GCAAAACTCAAATTTAAACATGTCAAA 57.234 25.926 0.00 3.30 0.00 2.69
794 797 8.939929 TGCAAAACTCAAATTTAAACATGTCAA 58.060 25.926 0.00 0.00 0.00 3.18
795 798 8.484641 TGCAAAACTCAAATTTAAACATGTCA 57.515 26.923 0.00 0.00 0.00 3.58
796 799 9.424659 CTTGCAAAACTCAAATTTAAACATGTC 57.575 29.630 0.00 0.00 0.00 3.06
799 802 9.771915 CAACTTGCAAAACTCAAATTTAAACAT 57.228 25.926 0.00 0.00 0.00 2.71
804 807 9.255304 GATACCAACTTGCAAAACTCAAATTTA 57.745 29.630 0.00 0.00 0.00 1.40
809 812 5.843673 TGATACCAACTTGCAAAACTCAA 57.156 34.783 0.00 0.00 0.00 3.02
811 814 5.163513 CCATGATACCAACTTGCAAAACTC 58.836 41.667 0.00 0.00 0.00 3.01
812 815 4.588528 ACCATGATACCAACTTGCAAAACT 59.411 37.500 0.00 0.00 0.00 2.66
813 816 4.881920 ACCATGATACCAACTTGCAAAAC 58.118 39.130 0.00 0.00 0.00 2.43
814 817 6.435591 TGATACCATGATACCAACTTGCAAAA 59.564 34.615 0.00 0.00 0.00 2.44
815 818 5.948758 TGATACCATGATACCAACTTGCAAA 59.051 36.000 0.00 0.00 0.00 3.68
816 819 5.504853 TGATACCATGATACCAACTTGCAA 58.495 37.500 0.00 0.00 0.00 4.08
817 820 5.109500 TGATACCATGATACCAACTTGCA 57.891 39.130 0.00 0.00 0.00 4.08
832 835 6.710295 GTGATACCATTGCTTACATGATACCA 59.290 38.462 0.00 0.00 0.00 3.25
833 836 6.149474 GGTGATACCATTGCTTACATGATACC 59.851 42.308 0.00 0.00 38.42 2.73
834 837 6.936900 AGGTGATACCATTGCTTACATGATAC 59.063 38.462 0.00 0.00 41.95 2.24
835 838 7.078249 AGGTGATACCATTGCTTACATGATA 57.922 36.000 0.00 0.00 41.95 2.15
836 839 5.945310 AGGTGATACCATTGCTTACATGAT 58.055 37.500 0.00 0.00 41.95 2.45
837 840 5.372343 AGGTGATACCATTGCTTACATGA 57.628 39.130 0.00 0.00 41.95 3.07
838 841 6.455360 AAAGGTGATACCATTGCTTACATG 57.545 37.500 0.28 0.00 41.95 3.21
839 842 7.480760 AAAAAGGTGATACCATTGCTTACAT 57.519 32.000 0.28 0.00 41.95 2.29
840 843 6.909550 AAAAAGGTGATACCATTGCTTACA 57.090 33.333 0.28 0.00 41.95 2.41
865 868 2.557924 ACCATTGCTGATGCTCGAAAAA 59.442 40.909 0.00 0.00 40.48 1.94
866 869 2.161855 ACCATTGCTGATGCTCGAAAA 58.838 42.857 0.00 0.00 40.48 2.29
867 870 1.825090 ACCATTGCTGATGCTCGAAA 58.175 45.000 0.00 0.00 40.48 3.46
868 871 2.689553 TACCATTGCTGATGCTCGAA 57.310 45.000 0.00 0.00 40.48 3.71
869 872 2.102925 TGATACCATTGCTGATGCTCGA 59.897 45.455 0.00 0.00 40.48 4.04
870 873 2.222678 GTGATACCATTGCTGATGCTCG 59.777 50.000 0.00 0.00 40.48 5.03
871 874 2.551459 GGTGATACCATTGCTGATGCTC 59.449 50.000 0.00 0.00 38.42 4.26
872 875 2.174210 AGGTGATACCATTGCTGATGCT 59.826 45.455 0.28 0.00 41.95 3.79
873 876 2.292569 CAGGTGATACCATTGCTGATGC 59.707 50.000 0.28 0.00 41.95 3.91
874 877 3.812262 TCAGGTGATACCATTGCTGATG 58.188 45.455 0.28 0.00 41.95 3.07
875 878 4.719026 ATCAGGTGATACCATTGCTGAT 57.281 40.909 0.28 0.00 41.95 2.90
876 879 4.960938 GTATCAGGTGATACCATTGCTGA 58.039 43.478 16.32 0.00 46.87 4.26
886 889 3.471306 AGAGGGGGAAGTATCAGGTGATA 59.529 47.826 0.00 0.00 36.05 2.15
887 890 2.251338 AGAGGGGGAAGTATCAGGTGAT 59.749 50.000 0.00 0.00 38.51 3.06
888 891 1.651770 AGAGGGGGAAGTATCAGGTGA 59.348 52.381 0.00 0.00 0.00 4.02
889 892 2.043227 GAGAGGGGGAAGTATCAGGTG 58.957 57.143 0.00 0.00 0.00 4.00
890 893 1.651770 TGAGAGGGGGAAGTATCAGGT 59.348 52.381 0.00 0.00 0.00 4.00
891 894 2.436173 GTTGAGAGGGGGAAGTATCAGG 59.564 54.545 0.00 0.00 0.00 3.86
892 895 3.107601 TGTTGAGAGGGGGAAGTATCAG 58.892 50.000 0.00 0.00 0.00 2.90
893 896 3.107601 CTGTTGAGAGGGGGAAGTATCA 58.892 50.000 0.00 0.00 0.00 2.15
894 897 2.436173 CCTGTTGAGAGGGGGAAGTATC 59.564 54.545 0.00 0.00 0.00 2.24
895 898 2.482494 CCTGTTGAGAGGGGGAAGTAT 58.518 52.381 0.00 0.00 0.00 2.12
896 899 1.952621 CCTGTTGAGAGGGGGAAGTA 58.047 55.000 0.00 0.00 0.00 2.24
897 900 1.492993 GCCTGTTGAGAGGGGGAAGT 61.493 60.000 0.00 0.00 33.17 3.01
898 901 1.204113 AGCCTGTTGAGAGGGGGAAG 61.204 60.000 0.00 0.00 33.17 3.46
899 902 1.151810 AGCCTGTTGAGAGGGGGAA 60.152 57.895 0.00 0.00 33.17 3.97
900 903 1.920325 CAGCCTGTTGAGAGGGGGA 60.920 63.158 0.00 0.00 33.17 4.81
901 904 1.920325 TCAGCCTGTTGAGAGGGGG 60.920 63.158 0.00 0.00 33.17 5.40
902 905 1.197430 AGTCAGCCTGTTGAGAGGGG 61.197 60.000 0.00 0.00 33.17 4.79
903 906 0.689623 AAGTCAGCCTGTTGAGAGGG 59.310 55.000 0.00 0.00 33.17 4.30
904 907 1.610102 CCAAGTCAGCCTGTTGAGAGG 60.610 57.143 0.00 0.00 36.03 3.69
905 908 1.345741 TCCAAGTCAGCCTGTTGAGAG 59.654 52.381 0.00 0.00 0.00 3.20
906 909 1.423584 TCCAAGTCAGCCTGTTGAGA 58.576 50.000 0.00 0.00 0.00 3.27
907 910 2.260844 TTCCAAGTCAGCCTGTTGAG 57.739 50.000 0.00 0.00 0.00 3.02
908 911 2.957402 ATTCCAAGTCAGCCTGTTGA 57.043 45.000 0.00 0.00 0.00 3.18
909 912 3.820467 TGTAATTCCAAGTCAGCCTGTTG 59.180 43.478 0.00 0.00 0.00 3.33
910 913 4.098914 TGTAATTCCAAGTCAGCCTGTT 57.901 40.909 0.00 0.00 0.00 3.16
911 914 3.788227 TGTAATTCCAAGTCAGCCTGT 57.212 42.857 0.00 0.00 0.00 4.00
912 915 5.649782 ATTTGTAATTCCAAGTCAGCCTG 57.350 39.130 0.00 0.00 0.00 4.85
913 916 5.539955 ACAATTTGTAATTCCAAGTCAGCCT 59.460 36.000 0.00 0.00 0.00 4.58
914 917 5.634859 CACAATTTGTAATTCCAAGTCAGCC 59.365 40.000 0.86 0.00 0.00 4.85
915 918 5.634859 CCACAATTTGTAATTCCAAGTCAGC 59.365 40.000 0.86 0.00 0.00 4.26
916 919 6.980593 TCCACAATTTGTAATTCCAAGTCAG 58.019 36.000 0.86 0.00 0.00 3.51
928 931 3.073798 TCTCTGCCCTTCCACAATTTGTA 59.926 43.478 0.86 0.00 0.00 2.41
930 933 2.517959 TCTCTGCCCTTCCACAATTTG 58.482 47.619 0.00 0.00 0.00 2.32
934 937 0.250901 GCTTCTCTGCCCTTCCACAA 60.251 55.000 0.00 0.00 0.00 3.33
936 939 0.392327 GAGCTTCTCTGCCCTTCCAC 60.392 60.000 0.00 0.00 0.00 4.02
942 945 0.813210 CCGATTGAGCTTCTCTGCCC 60.813 60.000 0.00 0.00 0.00 5.36
950 953 2.048603 GCTTGGGCCGATTGAGCTT 61.049 57.895 0.00 0.00 0.00 3.74
951 954 2.439156 GCTTGGGCCGATTGAGCT 60.439 61.111 0.00 0.00 0.00 4.09
1077 1446 4.016706 CGGAGGGTTGAGGCGGTT 62.017 66.667 0.00 0.00 0.00 4.44
1123 1492 2.511145 CTGAGAGGAAGCGCTGGC 60.511 66.667 12.58 6.29 40.37 4.85
1124 1493 0.459934 CTTCTGAGAGGAAGCGCTGG 60.460 60.000 12.58 0.00 36.68 4.85
1125 1494 0.459934 CCTTCTGAGAGGAAGCGCTG 60.460 60.000 12.58 0.00 40.76 5.18
1126 1495 1.896694 CCTTCTGAGAGGAAGCGCT 59.103 57.895 2.64 2.64 40.76 5.92
1135 1504 1.607756 ACTCTGCCGCCTTCTGAGA 60.608 57.895 0.00 0.00 34.76 3.27
1272 1641 1.135333 GAAGGAGAGCTCGGTAAGGTG 59.865 57.143 8.37 0.00 35.33 4.00
1376 1746 2.203788 TCGCCCCTGTGTTCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
1390 1760 2.514824 GGGCAGGGTCAATCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
1469 1846 1.230635 CCACTGAACAGTTCCCGCAG 61.231 60.000 10.93 4.65 40.20 5.18
1586 1969 1.003233 GGACAGCCTCTCCAACACC 60.003 63.158 0.00 0.00 0.00 4.16
1618 2001 2.126071 CATCCGTGTCGAAGGCGT 60.126 61.111 0.00 0.00 38.98 5.68
1619 2002 1.874019 CTCATCCGTGTCGAAGGCG 60.874 63.158 0.00 0.00 39.35 5.52
1620 2003 0.389948 AACTCATCCGTGTCGAAGGC 60.390 55.000 0.00 0.00 0.00 4.35
1621 2004 2.080286 AAACTCATCCGTGTCGAAGG 57.920 50.000 0.00 0.00 0.00 3.46
1630 2013 0.861837 GCGCTGGATAAACTCATCCG 59.138 55.000 0.00 0.00 46.51 4.18
1638 2021 1.153168 GAGGGCAGCGCTGGATAAA 60.153 57.895 36.47 0.00 0.00 1.40
1683 2066 0.109086 ATCTTGTGGAGACGACAGCG 60.109 55.000 0.00 0.00 44.79 5.18
1688 2071 3.306088 GGACTTTGATCTTGTGGAGACGA 60.306 47.826 0.00 0.00 37.17 4.20
1695 2078 3.430218 GTCGAGTGGACTTTGATCTTGTG 59.570 47.826 0.00 0.00 42.62 3.33
1697 2080 2.663602 CGTCGAGTGGACTTTGATCTTG 59.336 50.000 3.67 0.00 43.79 3.02
1715 2098 1.272781 CAAGCTCCTCAATCGTCGTC 58.727 55.000 0.00 0.00 0.00 4.20
1756 2139 0.230515 CATGATGTCGATGCCGTTCG 59.769 55.000 0.00 0.00 40.46 3.95
1794 2177 3.509184 TCCATCCTGATCGATAGCTTCAG 59.491 47.826 0.00 1.43 42.25 3.02
1885 2268 1.003112 TCGTCCCCGACATTTTGGG 60.003 57.895 0.00 0.00 45.80 4.12
1996 2383 7.310361 GGAGCAGAGGAAAATATATAGAGCAGT 60.310 40.741 0.00 0.00 0.00 4.40
2004 2391 9.205513 ACAAATTTGGAGCAGAGGAAAATATAT 57.794 29.630 21.74 0.00 0.00 0.86
2005 2392 8.593945 ACAAATTTGGAGCAGAGGAAAATATA 57.406 30.769 21.74 0.00 0.00 0.86
2006 2393 7.486407 ACAAATTTGGAGCAGAGGAAAATAT 57.514 32.000 21.74 0.00 0.00 1.28
2075 3219 3.434940 AGGGGGAAAATCACAGTACAC 57.565 47.619 0.00 0.00 0.00 2.90
2242 3392 5.952347 TGCTATCTCTTCACTGAAGTTCCTA 59.048 40.000 16.75 6.04 40.24 2.94
2353 3503 6.543831 CCTTAAGCTTCTGTATAAAGGTGCAT 59.456 38.462 0.00 2.48 34.84 3.96
2390 3540 7.129109 TGAAGTGAAGAATTACCGTGAATTC 57.871 36.000 9.98 9.98 43.35 2.17
2439 3591 8.094548 TCTAGCACTTTAGCTAAACAGATTTCA 58.905 33.333 14.96 0.00 45.69 2.69
2496 3677 7.550551 TCTTTGTAACCAAAATGCAATGTCAAA 59.449 29.630 0.00 0.00 39.95 2.69
2499 3680 7.475771 TTCTTTGTAACCAAAATGCAATGTC 57.524 32.000 0.00 0.00 39.95 3.06
2500 3681 7.714377 TGATTCTTTGTAACCAAAATGCAATGT 59.286 29.630 0.00 0.00 39.95 2.71
2501 3682 8.085720 TGATTCTTTGTAACCAAAATGCAATG 57.914 30.769 0.00 0.00 39.95 2.82
2502 3683 8.558700 GTTGATTCTTTGTAACCAAAATGCAAT 58.441 29.630 0.00 0.00 39.95 3.56
2504 3685 7.044181 TGTTGATTCTTTGTAACCAAAATGCA 58.956 30.769 0.00 0.00 39.95 3.96
2505 3686 7.224557 ACTGTTGATTCTTTGTAACCAAAATGC 59.775 33.333 0.00 0.00 39.95 3.56
2506 3687 8.647143 ACTGTTGATTCTTTGTAACCAAAATG 57.353 30.769 0.00 0.00 39.95 2.32
2507 3688 9.744468 GTACTGTTGATTCTTTGTAACCAAAAT 57.256 29.630 0.00 0.00 39.95 1.82
2508 3689 8.962679 AGTACTGTTGATTCTTTGTAACCAAAA 58.037 29.630 0.00 0.00 39.95 2.44
2509 3690 8.514330 AGTACTGTTGATTCTTTGTAACCAAA 57.486 30.769 0.00 0.00 38.22 3.28
2510 3691 8.514330 AAGTACTGTTGATTCTTTGTAACCAA 57.486 30.769 0.00 0.00 0.00 3.67
2541 3725 1.732259 CACTCCCGTGCACTGAAATAC 59.268 52.381 16.19 0.00 33.82 1.89
2731 3915 4.415596 TGGTAAATTCTCAGGGTGCAATT 58.584 39.130 0.00 0.00 0.00 2.32
2772 3956 8.609176 GTTTTCCCTCAAAATTTTGTAGGTTTC 58.391 33.333 28.46 18.90 36.35 2.78
2963 4149 9.868277 AAACATGTTAATTGAACTGTTCTGAAA 57.132 25.926 20.18 7.98 37.90 2.69
2999 4186 3.567585 TCAACACATTTCAATCAAGCGGA 59.432 39.130 0.00 0.00 0.00 5.54
3099 4289 4.566837 AGTCAATAGGGGTGTGGATATCA 58.433 43.478 4.83 0.00 0.00 2.15
3106 4296 4.341520 GGAGTACTAGTCAATAGGGGTGTG 59.658 50.000 0.00 0.00 35.63 3.82
3109 4299 3.798422 AGGGAGTACTAGTCAATAGGGGT 59.202 47.826 0.00 0.00 35.63 4.95
3149 4339 5.047021 CACTCCCTCTGTCTCAAATGTAAGA 60.047 44.000 0.00 0.00 0.00 2.10
3150 4340 5.174395 CACTCCCTCTGTCTCAAATGTAAG 58.826 45.833 0.00 0.00 0.00 2.34
3152 4342 3.515502 CCACTCCCTCTGTCTCAAATGTA 59.484 47.826 0.00 0.00 0.00 2.29
3153 4343 2.304180 CCACTCCCTCTGTCTCAAATGT 59.696 50.000 0.00 0.00 0.00 2.71
3154 4344 2.304180 ACCACTCCCTCTGTCTCAAATG 59.696 50.000 0.00 0.00 0.00 2.32
3155 4345 2.625639 ACCACTCCCTCTGTCTCAAAT 58.374 47.619 0.00 0.00 0.00 2.32
3156 4346 2.103153 ACCACTCCCTCTGTCTCAAA 57.897 50.000 0.00 0.00 0.00 2.69
3157 4347 2.992847 TACCACTCCCTCTGTCTCAA 57.007 50.000 0.00 0.00 0.00 3.02
3158 4348 3.117474 CCTATACCACTCCCTCTGTCTCA 60.117 52.174 0.00 0.00 0.00 3.27
3159 4349 3.117436 ACCTATACCACTCCCTCTGTCTC 60.117 52.174 0.00 0.00 0.00 3.36
3160 4350 2.860041 ACCTATACCACTCCCTCTGTCT 59.140 50.000 0.00 0.00 0.00 3.41
3161 4351 3.315880 ACCTATACCACTCCCTCTGTC 57.684 52.381 0.00 0.00 0.00 3.51
3162 4352 3.778622 AACCTATACCACTCCCTCTGT 57.221 47.619 0.00 0.00 0.00 3.41
3163 4353 4.770795 CAAAACCTATACCACTCCCTCTG 58.229 47.826 0.00 0.00 0.00 3.35
3165 4355 3.054655 TGCAAAACCTATACCACTCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
3168 4358 5.883673 TGTAATGCAAAACCTATACCACTCC 59.116 40.000 0.00 0.00 0.00 3.85
3169 4359 6.995511 TGTAATGCAAAACCTATACCACTC 57.004 37.500 0.00 0.00 0.00 3.51
3170 4360 9.640952 ATTATGTAATGCAAAACCTATACCACT 57.359 29.630 0.00 0.00 0.00 4.00
3179 4469 9.338622 ACCTCTACTATTATGTAATGCAAAACC 57.661 33.333 0.00 0.00 0.00 3.27
3184 4474 9.363401 ACTACACCTCTACTATTATGTAATGCA 57.637 33.333 0.00 0.00 0.00 3.96
3185 4475 9.843334 GACTACACCTCTACTATTATGTAATGC 57.157 37.037 0.00 0.00 0.00 3.56
3237 4530 4.781775 TCACCTTTGGTCTTCACCTAAA 57.218 40.909 0.00 0.00 44.17 1.85
3265 4560 3.644606 CCTGTCAGCTGGGGCAGT 61.645 66.667 22.61 0.00 41.70 4.40
3270 4565 1.897225 CTGGAGTCCTGTCAGCTGGG 61.897 65.000 15.13 7.58 34.83 4.45
3338 4855 6.292150 TGATCTTCTTCAGCGATAGAGTAGA 58.708 40.000 0.00 0.00 39.76 2.59
3339 4856 6.552859 TGATCTTCTTCAGCGATAGAGTAG 57.447 41.667 0.00 0.00 39.76 2.57
3340 4857 6.768381 TCTTGATCTTCTTCAGCGATAGAGTA 59.232 38.462 0.00 0.00 39.76 2.59
3341 4858 5.592282 TCTTGATCTTCTTCAGCGATAGAGT 59.408 40.000 0.00 0.00 39.76 3.24
3342 4859 6.070897 TCTTGATCTTCTTCAGCGATAGAG 57.929 41.667 0.00 0.00 39.76 2.43
3370 4887 1.493871 AGGAGATGGCCAGATCTTTGG 59.506 52.381 13.05 0.00 41.35 3.28
3416 4943 3.243359 TCATTTCTTTCTGGGCAGGTT 57.757 42.857 0.00 0.00 0.00 3.50
3417 4944 2.978156 TCATTTCTTTCTGGGCAGGT 57.022 45.000 0.00 0.00 0.00 4.00
3479 5008 4.441087 GGCGTTTAGAAAAGCTCAAACTTG 59.559 41.667 11.72 0.00 41.97 3.16
3485 5014 1.796459 GACGGCGTTTAGAAAAGCTCA 59.204 47.619 16.19 0.00 41.97 4.26
3486 5015 1.128136 GGACGGCGTTTAGAAAAGCTC 59.872 52.381 16.19 0.00 41.97 4.09
3487 5016 1.154197 GGACGGCGTTTAGAAAAGCT 58.846 50.000 16.19 0.00 41.97 3.74
3488 5017 1.154197 AGGACGGCGTTTAGAAAAGC 58.846 50.000 16.19 4.57 41.65 3.51
3489 5018 3.367025 CACTAGGACGGCGTTTAGAAAAG 59.633 47.826 27.83 16.23 0.00 2.27
3492 5021 1.403249 GCACTAGGACGGCGTTTAGAA 60.403 52.381 27.83 9.50 0.00 2.10
3493 5022 0.171903 GCACTAGGACGGCGTTTAGA 59.828 55.000 27.83 10.82 0.00 2.10
3494 5023 0.108992 TGCACTAGGACGGCGTTTAG 60.109 55.000 16.19 20.48 0.00 1.85
3496 5025 0.949105 CTTGCACTAGGACGGCGTTT 60.949 55.000 16.19 8.73 0.00 3.60
3499 5028 1.805945 GACTTGCACTAGGACGGCG 60.806 63.158 4.80 4.80 0.00 6.46
3540 5078 1.075601 ATCCCAGCTGTCCAAAGGAA 58.924 50.000 13.81 0.00 31.38 3.36
3541 5079 1.004745 GAATCCCAGCTGTCCAAAGGA 59.995 52.381 13.81 11.23 0.00 3.36
3542 5080 1.467920 GAATCCCAGCTGTCCAAAGG 58.532 55.000 13.81 5.49 0.00 3.11
3543 5081 1.467920 GGAATCCCAGCTGTCCAAAG 58.532 55.000 13.81 0.00 0.00 2.77
3544 5082 0.039618 GGGAATCCCAGCTGTCCAAA 59.960 55.000 14.67 0.00 44.65 3.28
3545 5083 1.691219 GGGAATCCCAGCTGTCCAA 59.309 57.895 14.67 0.91 44.65 3.53
3546 5084 2.669133 CGGGAATCCCAGCTGTCCA 61.669 63.158 19.81 1.61 45.83 4.02
3547 5085 2.190578 CGGGAATCCCAGCTGTCC 59.809 66.667 19.81 12.63 45.83 4.02
3553 5091 2.515523 CTGCAGCGGGAATCCCAG 60.516 66.667 19.81 12.13 45.83 4.45
3613 5151 7.557724 TGTTAGTGTTATTCCGAATACCATCA 58.442 34.615 2.11 0.00 0.00 3.07
3617 5155 6.238293 GCCTTGTTAGTGTTATTCCGAATACC 60.238 42.308 0.00 0.00 0.00 2.73
3650 5188 5.392767 TCTTGGCTCGAATATCTACATCC 57.607 43.478 0.00 0.00 0.00 3.51
3758 5384 1.074775 TCCCTTACTCCATCCCCCG 60.075 63.158 0.00 0.00 0.00 5.73
3771 5397 6.950619 GGAATATGAATTGGCTATTCTCCCTT 59.049 38.462 19.63 9.85 42.63 3.95
3773 5399 6.376581 CAGGAATATGAATTGGCTATTCTCCC 59.623 42.308 19.63 13.40 42.63 4.30
3774 5400 6.127786 GCAGGAATATGAATTGGCTATTCTCC 60.128 42.308 19.63 17.19 42.63 3.71
3799 5425 9.927668 ATAATTTCAAGTTTTGTTACATCCAGG 57.072 29.630 0.00 0.00 0.00 4.45
3836 5462 7.220030 ACATCACTCTACAATCTTCAAACACT 58.780 34.615 0.00 0.00 0.00 3.55
3838 5464 8.147704 TGTACATCACTCTACAATCTTCAAACA 58.852 33.333 0.00 0.00 0.00 2.83
3858 5484 9.253832 TGGAGAATAAATTCCAAACATGTACAT 57.746 29.630 1.41 1.41 40.41 2.29
3909 5537 9.926751 CATGATTGTATTGTAGATTGACAAGTC 57.073 33.333 0.00 0.00 42.38 3.01
3910 5538 9.671279 TCATGATTGTATTGTAGATTGACAAGT 57.329 29.630 0.00 0.00 42.38 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.