Multiple sequence alignment - TraesCS5D01G054600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G054600 chr5D 100.000 2564 0 0 1 2564 51814079 51811516 0.000000e+00 4735.0
1 TraesCS5D01G054600 chr5D 97.436 39 1 0 2526 2564 182634546 182634584 1.650000e-07 67.6
2 TraesCS5D01G054600 chr5A 96.654 807 17 5 1735 2536 40838504 40837703 0.000000e+00 1332.0
3 TraesCS5D01G054600 chr5A 96.264 803 21 2 926 1719 40839290 40838488 0.000000e+00 1308.0
4 TraesCS5D01G054600 chr5A 95.000 40 2 0 2525 2564 698513731 698513692 2.130000e-06 63.9
5 TraesCS5D01G054600 chr5B 84.519 801 78 20 1744 2536 54715969 54715207 0.000000e+00 750.0
6 TraesCS5D01G054600 chr5B 82.264 857 76 31 1 805 696236611 696237443 0.000000e+00 671.0
7 TraesCS5D01G054600 chr5B 96.746 338 11 0 997 1334 54716919 54716582 4.790000e-157 564.0
8 TraesCS5D01G054600 chr5B 86.082 388 33 13 1332 1709 54716510 54716134 5.140000e-107 398.0
9 TraesCS5D01G054600 chr5B 100.000 34 0 0 2531 2564 496806883 496806850 2.130000e-06 63.9
10 TraesCS5D01G054600 chr2D 84.635 794 75 18 64 829 650890081 650889307 0.000000e+00 747.0
11 TraesCS5D01G054600 chr1B 85.802 655 73 12 1 643 623543577 623544223 0.000000e+00 676.0
12 TraesCS5D01G054600 chr1B 95.652 138 6 0 710 847 623544230 623544367 3.320000e-54 222.0
13 TraesCS5D01G054600 chr1B 92.623 122 7 2 724 843 61315091 61315212 9.430000e-40 174.0
14 TraesCS5D01G054600 chr1B 84.211 171 23 4 207 374 61314187 61314356 2.040000e-36 163.0
15 TraesCS5D01G054600 chr2A 82.374 834 79 25 67 848 581149606 581148789 0.000000e+00 664.0
16 TraesCS5D01G054600 chr2A 75.385 195 34 13 187 373 157528808 157528620 5.880000e-12 82.4
17 TraesCS5D01G054600 chr1A 82.252 817 87 21 81 846 516452406 516451597 0.000000e+00 652.0
18 TraesCS5D01G054600 chr1A 82.280 649 62 20 110 708 299513590 299514235 1.760000e-141 512.0
19 TraesCS5D01G054600 chr2B 81.193 654 92 19 209 842 729495837 729496479 4.930000e-137 497.0
20 TraesCS5D01G054600 chr2B 81.159 276 37 13 583 843 664368603 664368878 9.300000e-50 207.0
21 TraesCS5D01G054600 chr4A 88.020 409 36 8 926 1334 586439461 586439856 2.990000e-129 472.0
22 TraesCS5D01G054600 chr4A 84.133 271 31 8 2252 2512 586440632 586440900 4.230000e-63 252.0
23 TraesCS5D01G054600 chr4A 92.000 75 6 0 849 923 426438117 426438043 3.490000e-19 106.0
24 TraesCS5D01G054600 chr3B 80.757 634 70 24 64 652 696682229 696682855 5.030000e-122 448.0
25 TraesCS5D01G054600 chr3B 89.773 176 17 1 670 844 696683235 696683410 9.230000e-55 224.0
26 TraesCS5D01G054600 chr3B 90.278 72 7 0 849 920 223559480 223559551 7.550000e-16 95.3
27 TraesCS5D01G054600 chr3B 97.500 40 0 1 2526 2564 527239935 527239974 1.650000e-07 67.6
28 TraesCS5D01G054600 chr3B 93.023 43 3 0 2522 2564 593935120 593935162 2.130000e-06 63.9
29 TraesCS5D01G054600 chr4B 89.859 355 22 9 976 1326 24855476 24855820 6.510000e-121 444.0
30 TraesCS5D01G054600 chr4B 89.296 355 24 9 976 1329 25266911 25266570 1.410000e-117 433.0
31 TraesCS5D01G054600 chr4B 83.764 271 33 7 2252 2512 25265844 25265575 1.970000e-61 246.0
32 TraesCS5D01G054600 chr4B 83.395 271 34 7 2252 2512 24856515 24856784 9.170000e-60 241.0
33 TraesCS5D01G054600 chr4D 89.766 342 20 9 988 1329 14986962 14986636 8.480000e-115 424.0
34 TraesCS5D01G054600 chr4D 83.212 274 32 9 2252 2516 14985883 14985615 3.300000e-59 239.0
35 TraesCS5D01G054600 chr4D 95.000 40 2 0 2525 2564 509670288 509670249 2.130000e-06 63.9
36 TraesCS5D01G054600 chr7D 84.709 412 42 11 321 721 10684491 10684892 2.390000e-105 392.0
37 TraesCS5D01G054600 chr7D 84.390 410 34 15 81 465 178129163 178129567 2.410000e-100 375.0
38 TraesCS5D01G054600 chr7D 83.558 371 34 7 64 409 15213202 15212834 3.180000e-84 322.0
39 TraesCS5D01G054600 chr7D 100.000 44 0 0 805 848 5431016 5430973 5.880000e-12 82.4
40 TraesCS5D01G054600 chr7D 95.000 40 2 0 2525 2564 544559092 544559131 2.130000e-06 63.9
41 TraesCS5D01G054600 chr6D 83.202 381 27 13 64 421 26358635 26358269 5.330000e-82 315.0
42 TraesCS5D01G054600 chr3A 81.122 392 55 12 251 633 573838626 573839007 1.930000e-76 296.0
43 TraesCS5D01G054600 chr3A 81.974 233 31 7 64 293 623873675 623873451 1.210000e-43 187.0
44 TraesCS5D01G054600 chr3A 82.812 192 19 5 654 844 573840378 573840556 2.640000e-35 159.0
45 TraesCS5D01G054600 chr1D 82.817 355 34 12 64 394 467364962 467365313 2.500000e-75 292.0
46 TraesCS5D01G054600 chr1D 80.109 367 40 17 84 422 61913235 61913596 2.550000e-60 243.0
47 TraesCS5D01G054600 chr1D 89.873 79 7 1 849 926 459832850 459832772 1.620000e-17 100.0
48 TraesCS5D01G054600 chr1D 100.000 30 0 0 737 766 61914100 61914129 3.560000e-04 56.5
49 TraesCS5D01G054600 chr7B 80.513 390 39 15 64 419 641386374 641385988 5.440000e-67 265.0
50 TraesCS5D01G054600 chr3D 92.000 75 6 0 849 923 80479653 80479727 3.490000e-19 106.0
51 TraesCS5D01G054600 chr3D 95.349 43 2 0 2522 2564 481970970 481970928 4.580000e-08 69.4
52 TraesCS5D01G054600 chr3D 100.000 36 0 0 2529 2564 2721138 2721103 1.650000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G054600 chr5D 51811516 51814079 2563 True 4735.000000 4735 100.000000 1 2564 1 chr5D.!!$R1 2563
1 TraesCS5D01G054600 chr5A 40837703 40839290 1587 True 1320.000000 1332 96.459000 926 2536 2 chr5A.!!$R2 1610
2 TraesCS5D01G054600 chr5B 696236611 696237443 832 False 671.000000 671 82.264000 1 805 1 chr5B.!!$F1 804
3 TraesCS5D01G054600 chr5B 54715207 54716919 1712 True 570.666667 750 89.115667 997 2536 3 chr5B.!!$R2 1539
4 TraesCS5D01G054600 chr2D 650889307 650890081 774 True 747.000000 747 84.635000 64 829 1 chr2D.!!$R1 765
5 TraesCS5D01G054600 chr1B 623543577 623544367 790 False 449.000000 676 90.727000 1 847 2 chr1B.!!$F2 846
6 TraesCS5D01G054600 chr2A 581148789 581149606 817 True 664.000000 664 82.374000 67 848 1 chr2A.!!$R2 781
7 TraesCS5D01G054600 chr1A 516451597 516452406 809 True 652.000000 652 82.252000 81 846 1 chr1A.!!$R1 765
8 TraesCS5D01G054600 chr1A 299513590 299514235 645 False 512.000000 512 82.280000 110 708 1 chr1A.!!$F1 598
9 TraesCS5D01G054600 chr2B 729495837 729496479 642 False 497.000000 497 81.193000 209 842 1 chr2B.!!$F2 633
10 TraesCS5D01G054600 chr4A 586439461 586440900 1439 False 362.000000 472 86.076500 926 2512 2 chr4A.!!$F1 1586
11 TraesCS5D01G054600 chr3B 696682229 696683410 1181 False 336.000000 448 85.265000 64 844 2 chr3B.!!$F4 780
12 TraesCS5D01G054600 chr4B 24855476 24856784 1308 False 342.500000 444 86.627000 976 2512 2 chr4B.!!$F1 1536
13 TraesCS5D01G054600 chr4B 25265575 25266911 1336 True 339.500000 433 86.530000 976 2512 2 chr4B.!!$R1 1536
14 TraesCS5D01G054600 chr4D 14985615 14986962 1347 True 331.500000 424 86.489000 988 2516 2 chr4D.!!$R2 1528
15 TraesCS5D01G054600 chr3A 573838626 573840556 1930 False 227.500000 296 81.967000 251 844 2 chr3A.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 2098 0.03779 TGCTGCCCATTTTAAACGCC 60.038 50.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 3545 1.365699 CCAACCTAATTCACCCGACG 58.634 55.0 0.0 0.0 0.0 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 256 8.773404 TTCAAATTTTGTTCGGGAGTTTAAAA 57.227 26.923 8.89 0.00 0.00 1.52
300 366 4.278170 TCATGCTTCGAATTTTGTTCTGGT 59.722 37.500 0.00 0.00 0.00 4.00
533 632 2.520979 TCGAAAAGTGTTTGCGGTTTG 58.479 42.857 0.07 0.00 0.00 2.93
535 634 3.112580 CGAAAAGTGTTTGCGGTTTGAT 58.887 40.909 0.00 0.00 0.00 2.57
536 635 3.061271 CGAAAAGTGTTTGCGGTTTGATG 60.061 43.478 0.00 0.00 0.00 3.07
622 723 3.243267 CGTGGTTGGTTTGGTTCTTAAGG 60.243 47.826 1.85 0.00 0.00 2.69
627 728 6.183360 TGGTTGGTTTGGTTCTTAAGGATTTC 60.183 38.462 1.85 0.00 0.00 2.17
643 1379 4.531732 AGGATTTCTGCTGCCCATTTTAAA 59.468 37.500 0.00 0.00 0.00 1.52
647 2098 0.037790 TGCTGCCCATTTTAAACGCC 60.038 50.000 0.00 0.00 0.00 5.68
648 2099 0.246360 GCTGCCCATTTTAAACGCCT 59.754 50.000 0.00 0.00 0.00 5.52
652 2103 1.337728 GCCCATTTTAAACGCCTGCTT 60.338 47.619 0.00 0.00 0.00 3.91
664 2115 2.094338 ACGCCTGCTTAAGTGGTAGTAC 60.094 50.000 14.92 0.00 0.00 2.73
668 2473 4.732938 GCCTGCTTAAGTGGTAGTACTACG 60.733 50.000 23.40 11.15 34.53 3.51
680 2485 3.198863 AGTACTACGACTTGTGAAGCG 57.801 47.619 0.00 0.00 35.30 4.68
708 2513 2.542020 TGTGTTCGAATCCTGCTTGA 57.458 45.000 0.00 0.00 0.00 3.02
848 2654 2.220586 GGCAGATAGGAGCTCCCCC 61.221 68.421 29.54 17.76 36.42 5.40
849 2655 2.578714 GCAGATAGGAGCTCCCCCG 61.579 68.421 29.54 14.29 36.42 5.73
850 2656 1.152440 CAGATAGGAGCTCCCCCGT 60.152 63.158 29.54 13.43 36.42 5.28
851 2657 1.152440 AGATAGGAGCTCCCCCGTG 60.152 63.158 29.54 0.00 36.42 4.94
852 2658 2.844839 ATAGGAGCTCCCCCGTGC 60.845 66.667 29.54 2.09 36.42 5.34
924 2730 2.033448 CCCGTTTGGCCAGCTACA 59.967 61.111 5.11 0.00 0.00 2.74
935 2741 1.649390 CCAGCTACACGAGAGCGAGT 61.649 60.000 0.00 0.00 44.98 4.18
959 2765 1.800315 CGAATCTCGACGCAACGGT 60.800 57.895 0.00 0.00 43.74 4.83
1107 2941 4.175337 CGGGGGATCGTGGTGCAT 62.175 66.667 0.00 0.00 0.00 3.96
1116 2950 1.078214 CGTGGTGCATGTGAGGGAT 60.078 57.895 0.00 0.00 0.00 3.85
1424 3341 3.433306 CCAACAAGGATGTGGGTTAGA 57.567 47.619 0.00 0.00 44.55 2.10
1425 3342 3.761897 CCAACAAGGATGTGGGTTAGAA 58.238 45.455 0.00 0.00 44.55 2.10
1429 3346 5.520748 ACAAGGATGTGGGTTAGAATTCT 57.479 39.130 13.56 13.56 38.69 2.40
1569 3548 8.391106 ACATGAAGCAGATTTTACTAATTCGTC 58.609 33.333 0.00 0.00 0.00 4.20
1790 3907 8.718734 GGTCACTTTAACGATCTACAAAAGATT 58.281 33.333 11.36 0.00 45.35 2.40
2028 4188 1.521457 GAATGTGATCCGCGCTCCA 60.521 57.895 5.56 0.78 0.00 3.86
2037 4197 1.865865 TCCGCGCTCCATTCTAAATC 58.134 50.000 5.56 0.00 0.00 2.17
2062 4222 6.916360 TTTGAAGTTCTATTTTGCCCTGAT 57.084 33.333 4.17 0.00 0.00 2.90
2230 4390 5.934625 CCTATAGGCATGGTCAAATGTAGAC 59.065 44.000 5.67 0.00 35.29 2.59
2308 4469 4.598036 ATTGTCCCATTTCCTGATGACT 57.402 40.909 0.00 0.00 31.50 3.41
2517 4690 8.164070 ACTGAGGAGGTTAATTTAAGTTGATGT 58.836 33.333 0.00 0.00 0.00 3.06
2518 4691 8.561738 TGAGGAGGTTAATTTAAGTTGATGTC 57.438 34.615 0.00 0.00 0.00 3.06
2536 4709 6.609533 TGATGTCGAGTGTTAGAAAGTACTC 58.390 40.000 0.00 0.00 36.95 2.59
2537 4710 5.368256 TGTCGAGTGTTAGAAAGTACTCC 57.632 43.478 0.00 0.00 36.97 3.85
2538 4711 4.217118 TGTCGAGTGTTAGAAAGTACTCCC 59.783 45.833 0.00 0.00 36.97 4.30
2539 4712 4.458642 GTCGAGTGTTAGAAAGTACTCCCT 59.541 45.833 0.00 0.00 36.97 4.20
2540 4713 4.699257 TCGAGTGTTAGAAAGTACTCCCTC 59.301 45.833 0.00 0.00 36.97 4.30
2541 4714 4.701171 CGAGTGTTAGAAAGTACTCCCTCT 59.299 45.833 0.00 1.59 36.97 3.69
2542 4715 5.392165 CGAGTGTTAGAAAGTACTCCCTCTG 60.392 48.000 0.00 0.00 36.97 3.35
2543 4716 5.395611 AGTGTTAGAAAGTACTCCCTCTGT 58.604 41.667 0.00 0.00 0.00 3.41
2544 4717 6.550163 AGTGTTAGAAAGTACTCCCTCTGTA 58.450 40.000 0.00 0.00 0.00 2.74
2545 4718 7.008941 AGTGTTAGAAAGTACTCCCTCTGTAA 58.991 38.462 0.00 0.00 0.00 2.41
2546 4719 7.508296 AGTGTTAGAAAGTACTCCCTCTGTAAA 59.492 37.037 0.00 0.00 0.00 2.01
2547 4720 7.598118 GTGTTAGAAAGTACTCCCTCTGTAAAC 59.402 40.741 0.00 2.14 0.00 2.01
2548 4721 7.288389 TGTTAGAAAGTACTCCCTCTGTAAACA 59.712 37.037 0.00 4.50 0.00 2.83
2549 4722 6.742559 AGAAAGTACTCCCTCTGTAAACAA 57.257 37.500 0.00 0.00 0.00 2.83
2550 4723 7.133133 AGAAAGTACTCCCTCTGTAAACAAA 57.867 36.000 0.00 0.00 0.00 2.83
2551 4724 7.746703 AGAAAGTACTCCCTCTGTAAACAAAT 58.253 34.615 0.00 0.00 0.00 2.32
2552 4725 8.877195 AGAAAGTACTCCCTCTGTAAACAAATA 58.123 33.333 0.00 0.00 0.00 1.40
2553 4726 9.668497 GAAAGTACTCCCTCTGTAAACAAATAT 57.332 33.333 0.00 0.00 0.00 1.28
2559 4732 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
2560 4733 7.857456 TCCCTCTGTAAACAAATATAAGAGCA 58.143 34.615 0.00 0.00 0.00 4.26
2561 4734 8.494433 TCCCTCTGTAAACAAATATAAGAGCAT 58.506 33.333 0.00 0.00 0.00 3.79
2562 4735 9.125026 CCCTCTGTAAACAAATATAAGAGCATT 57.875 33.333 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 200 4.303282 CCGAACAAAATTTGAAACCCGAT 58.697 39.130 13.19 0.00 0.00 4.18
326 393 5.599999 TTTTGGAATCTCCCGAACAAAAA 57.400 34.783 0.00 0.00 35.03 1.94
510 609 3.219052 ACCGCAAACACTTTTCGAAAA 57.781 38.095 21.35 21.35 0.00 2.29
533 632 8.099364 TGGAGAAAAAGTGAATTCTGTACATC 57.901 34.615 7.05 0.00 36.08 3.06
535 634 7.873719 TTGGAGAAAAAGTGAATTCTGTACA 57.126 32.000 7.05 0.00 36.08 2.90
536 635 9.750125 ATTTTGGAGAAAAAGTGAATTCTGTAC 57.250 29.630 7.05 0.00 41.00 2.90
622 723 4.327087 CGTTTAAAATGGGCAGCAGAAATC 59.673 41.667 0.00 0.00 0.00 2.17
627 728 1.349234 GCGTTTAAAATGGGCAGCAG 58.651 50.000 0.00 0.00 0.00 4.24
643 1379 0.974383 ACTACCACTTAAGCAGGCGT 59.026 50.000 13.05 8.67 0.00 5.68
647 2098 5.353678 AGTCGTAGTACTACCACTTAAGCAG 59.646 44.000 22.93 8.66 34.60 4.24
648 2099 5.248640 AGTCGTAGTACTACCACTTAAGCA 58.751 41.667 22.93 0.66 34.60 3.91
652 2103 6.230472 TCACAAGTCGTAGTACTACCACTTA 58.770 40.000 32.29 21.06 42.66 2.24
664 2115 1.002250 ACGCGCTTCACAAGTCGTAG 61.002 55.000 5.73 0.00 37.79 3.51
668 2473 2.159272 GACCACGCGCTTCACAAGTC 62.159 60.000 5.73 0.00 0.00 3.01
680 2485 0.865769 ATTCGAACACAAGACCACGC 59.134 50.000 0.00 0.00 0.00 5.34
725 2530 0.458716 AAGAAACTAGAGCGCTCGCC 60.459 55.000 30.39 16.50 43.17 5.54
907 2713 2.033448 TGTAGCTGGCCAAACGGG 59.967 61.111 7.01 0.00 40.85 5.28
908 2714 2.677003 CGTGTAGCTGGCCAAACGG 61.677 63.158 7.01 0.00 0.00 4.44
909 2715 1.626654 CTCGTGTAGCTGGCCAAACG 61.627 60.000 7.01 12.18 0.00 3.60
910 2716 0.320421 TCTCGTGTAGCTGGCCAAAC 60.320 55.000 7.01 6.22 0.00 2.93
911 2717 0.037326 CTCTCGTGTAGCTGGCCAAA 60.037 55.000 7.01 0.00 0.00 3.28
912 2718 1.591703 CTCTCGTGTAGCTGGCCAA 59.408 57.895 7.01 0.00 0.00 4.52
913 2719 3.006756 GCTCTCGTGTAGCTGGCCA 62.007 63.158 4.71 4.71 37.01 5.36
914 2720 2.202810 GCTCTCGTGTAGCTGGCC 60.203 66.667 0.00 0.00 37.01 5.36
915 2721 2.580867 CGCTCTCGTGTAGCTGGC 60.581 66.667 0.00 0.00 37.85 4.85
916 2722 1.063327 CTCGCTCTCGTGTAGCTGG 59.937 63.158 0.00 0.00 37.85 4.85
917 2723 0.247894 GACTCGCTCTCGTGTAGCTG 60.248 60.000 0.00 0.00 41.72 4.24
918 2724 1.697772 CGACTCGCTCTCGTGTAGCT 61.698 60.000 0.00 0.00 41.72 3.32
919 2725 1.297012 CGACTCGCTCTCGTGTAGC 60.297 63.158 0.00 0.00 41.72 3.58
920 2726 0.025256 GACGACTCGCTCTCGTGTAG 59.975 60.000 6.59 0.00 44.28 2.74
921 2727 1.357258 GGACGACTCGCTCTCGTGTA 61.357 60.000 6.59 0.00 44.28 2.90
922 2728 2.678956 GGACGACTCGCTCTCGTGT 61.679 63.158 6.59 0.00 44.28 4.49
923 2729 2.098680 GGACGACTCGCTCTCGTG 59.901 66.667 6.59 0.00 44.28 4.35
924 2730 3.126225 GGGACGACTCGCTCTCGT 61.126 66.667 0.00 2.09 46.86 4.18
1107 2941 1.379916 CAGGTTGCCATCCCTCACA 59.620 57.895 0.00 0.00 0.00 3.58
1424 3341 6.108687 TCATCAAACATCTGCTACGAGAATT 58.891 36.000 0.00 0.00 0.00 2.17
1425 3342 5.664457 TCATCAAACATCTGCTACGAGAAT 58.336 37.500 0.00 0.00 0.00 2.40
1429 3346 5.447683 GCATTTCATCAAACATCTGCTACGA 60.448 40.000 0.00 0.00 0.00 3.43
1566 3545 1.365699 CCAACCTAATTCACCCGACG 58.634 55.000 0.00 0.00 0.00 5.12
1569 3548 2.489040 GGCCAACCTAATTCACCCG 58.511 57.895 0.00 0.00 0.00 5.28
1738 3725 9.667107 CAAACTGTCATTCCCTTTACTAGATTA 57.333 33.333 0.00 0.00 0.00 1.75
1790 3907 4.407296 AGCCAACATTCAAGGGTTTAAACA 59.593 37.500 19.57 0.00 0.00 2.83
2037 4197 6.690530 TCAGGGCAAAATAGAACTTCAAATG 58.309 36.000 0.00 0.00 0.00 2.32
2116 4276 8.006741 CAAAACTAATTTGGTGTTGTAGATGC 57.993 34.615 7.46 0.00 43.85 3.91
2213 4373 4.142600 GGTCTTGTCTACATTTGACCATGC 60.143 45.833 17.78 0.00 39.09 4.06
2230 4390 5.468746 TGATTTTTGTCCTAAGTCGGTCTTG 59.531 40.000 0.00 0.00 37.56 3.02
2308 4469 5.366477 TCACTATGAGATTCAGTATGCCCAA 59.634 40.000 0.00 0.00 34.76 4.12
2464 4632 9.130312 GACAATATAGGACACGATTAGATTGTC 57.870 37.037 12.53 12.53 43.11 3.18
2517 4690 4.660168 AGGGAGTACTTTCTAACACTCGA 58.340 43.478 0.00 0.00 38.62 4.04
2518 4691 4.701171 AGAGGGAGTACTTTCTAACACTCG 59.299 45.833 0.00 0.00 38.62 4.18
2536 4709 8.682936 ATGCTCTTATATTTGTTTACAGAGGG 57.317 34.615 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.