Multiple sequence alignment - TraesCS5D01G053300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G053300 chr5D 100.000 7037 0 0 1 7037 50973600 50980636 0.000000e+00 12995.0
1 TraesCS5D01G053300 chr5D 87.193 734 75 7 5041 5756 51322395 51323127 0.000000e+00 817.0
2 TraesCS5D01G053300 chr5D 87.243 729 75 6 5045 5756 51245790 51246517 0.000000e+00 815.0
3 TraesCS5D01G053300 chr5D 91.860 344 18 6 1 339 103193467 103193129 8.260000e-129 472.0
4 TraesCS5D01G053300 chr5D 90.881 329 30 0 5041 5369 51142730 51143058 6.480000e-120 442.0
5 TraesCS5D01G053300 chr5D 90.881 329 30 0 5041 5369 51162666 51162994 6.480000e-120 442.0
6 TraesCS5D01G053300 chr5D 86.607 224 26 4 6815 7037 387103127 387102907 1.960000e-60 244.0
7 TraesCS5D01G053300 chr5D 82.126 207 37 0 5768 5974 483825376 483825170 2.020000e-40 178.0
8 TraesCS5D01G053300 chr5D 91.667 60 5 0 5768 5827 483985846 483985787 4.520000e-12 84.2
9 TraesCS5D01G053300 chr5A 92.268 1940 108 14 2648 4555 40471809 40473738 0.000000e+00 2713.0
10 TraesCS5D01G053300 chr5A 88.871 1222 97 15 4539 5739 40474045 40475248 0.000000e+00 1467.0
11 TraesCS5D01G053300 chr5A 84.118 1190 157 20 3408 4567 634471666 634472853 0.000000e+00 1122.0
12 TraesCS5D01G053300 chr5A 87.500 448 43 5 2212 2653 40469689 40470129 8.150000e-139 505.0
13 TraesCS5D01G053300 chr5A 88.791 339 31 7 1649 1985 40468416 40468749 6.570000e-110 409.0
14 TraesCS5D01G053300 chr5A 90.393 229 15 3 941 1162 40468194 40468422 1.920000e-75 294.0
15 TraesCS5D01G053300 chr5A 88.202 178 12 3 5593 5761 40619530 40619707 3.330000e-48 204.0
16 TraesCS5D01G053300 chr5A 78.355 231 44 6 5988 6216 21693522 21693296 2.050000e-30 145.0
17 TraesCS5D01G053300 chr1A 94.877 1054 34 6 5985 7037 295576296 295575262 0.000000e+00 1629.0
18 TraesCS5D01G053300 chr1A 96.804 219 7 0 5768 5986 295576546 295576328 4.010000e-97 366.0
19 TraesCS5D01G053300 chr5B 95.227 880 26 9 1347 2214 54194287 54195162 0.000000e+00 1378.0
20 TraesCS5D01G053300 chr5B 94.165 874 34 10 4911 5767 54196597 54197470 0.000000e+00 1315.0
21 TraesCS5D01G053300 chr5B 91.073 885 52 10 2212 3080 54195259 54196132 0.000000e+00 1171.0
22 TraesCS5D01G053300 chr5B 87.466 734 74 8 5045 5761 54392615 54393347 0.000000e+00 830.0
23 TraesCS5D01G053300 chr5B 83.113 681 82 16 3918 4569 588928412 588929088 2.190000e-164 590.0
24 TraesCS5D01G053300 chr5B 85.464 399 28 4 934 1326 54193145 54193519 8.560000e-104 388.0
25 TraesCS5D01G053300 chr5B 88.571 105 9 3 225 328 692882030 692882132 2.670000e-24 124.0
26 TraesCS5D01G053300 chr3D 85.123 1183 144 14 3408 4571 608744880 608746049 0.000000e+00 1181.0
27 TraesCS5D01G053300 chr7D 84.635 1178 148 15 3411 4569 576641386 576640223 0.000000e+00 1142.0
28 TraesCS5D01G053300 chr7D 84.383 1191 151 17 3408 4569 178288609 178289793 0.000000e+00 1136.0
29 TraesCS5D01G053300 chr7D 84.452 1177 152 9 3411 4569 193415765 193414602 0.000000e+00 1131.0
30 TraesCS5D01G053300 chr7D 85.464 571 62 9 4019 4570 52474431 52474999 6.120000e-160 575.0
31 TraesCS5D01G053300 chr7D 84.384 365 47 4 3408 3772 32874509 32874863 4.040000e-92 350.0
32 TraesCS5D01G053300 chr7B 84.126 1178 153 18 3410 4568 687964511 687963349 0.000000e+00 1109.0
33 TraesCS5D01G053300 chr7B 82.710 1203 156 26 3411 4568 451358134 451356939 0.000000e+00 1022.0
34 TraesCS5D01G053300 chr6B 83.811 1186 154 20 3408 4568 599987353 599988525 0.000000e+00 1092.0
35 TraesCS5D01G053300 chr6B 84.281 668 81 9 3926 4573 55346621 55347284 1.290000e-176 630.0
36 TraesCS5D01G053300 chr6B 79.744 859 120 35 2200 3035 126313088 126312261 2.200000e-159 573.0
37 TraesCS5D01G053300 chr6B 83.622 519 67 13 1351 1856 95564860 95564347 8.260000e-129 472.0
38 TraesCS5D01G053300 chr6B 78.774 212 40 5 5773 5981 56042846 56042637 3.420000e-28 137.0
39 TraesCS5D01G053300 chr6B 86.364 88 12 0 1234 1321 95566758 95566671 5.810000e-16 97.1
40 TraesCS5D01G053300 chr2D 84.366 1081 140 14 3408 4473 92864454 92865520 0.000000e+00 1033.0
41 TraesCS5D01G053300 chr2D 83.533 753 83 11 5027 5757 192752921 192753654 0.000000e+00 665.0
42 TraesCS5D01G053300 chr2D 81.784 527 63 21 1331 1839 192748191 192748702 1.830000e-110 411.0
43 TraesCS5D01G053300 chr2D 82.984 382 40 11 967 1323 192747102 192747483 8.810000e-84 322.0
44 TraesCS5D01G053300 chr2D 87.892 223 23 4 6816 7037 519336555 519336336 7.000000e-65 259.0
45 TraesCS5D01G053300 chr2D 89.637 193 20 0 2212 2404 192751072 192751264 5.450000e-61 246.0
46 TraesCS5D01G053300 chr2D 81.696 224 22 12 1585 1796 648384206 648384422 1.210000e-37 169.0
47 TraesCS5D01G053300 chr7A 82.412 1194 172 22 3408 4573 119294365 119295548 0.000000e+00 1007.0
48 TraesCS5D01G053300 chr7A 90.476 126 9 2 1 123 80593099 80593224 5.650000e-36 163.0
49 TraesCS5D01G053300 chr7A 85.496 131 16 2 210 339 309801079 309800951 4.430000e-27 134.0
50 TraesCS5D01G053300 chr7A 90.000 100 9 1 237 336 690832296 690832198 2.060000e-25 128.0
51 TraesCS5D01G053300 chr3B 83.978 905 121 8 3408 4290 31729825 31730727 0.000000e+00 846.0
52 TraesCS5D01G053300 chr6D 83.986 843 112 11 4925 5756 41603512 41604342 0.000000e+00 787.0
53 TraesCS5D01G053300 chr6D 79.651 860 121 37 2200 3036 56126554 56125726 2.850000e-158 569.0
54 TraesCS5D01G053300 chr6D 83.452 423 47 16 1559 1972 41600731 41601139 8.620000e-99 372.0
55 TraesCS5D01G053300 chr6D 78.571 224 43 5 5764 5985 462849209 462848989 7.360000e-30 143.0
56 TraesCS5D01G053300 chr2A 82.593 856 90 25 4949 5757 205202151 205201308 0.000000e+00 701.0
57 TraesCS5D01G053300 chr2A 84.818 494 51 17 1337 1809 205207908 205207418 6.390000e-130 475.0
58 TraesCS5D01G053300 chr2A 88.614 202 23 0 2212 2413 205203932 205203731 5.450000e-61 246.0
59 TraesCS5D01G053300 chr6A 83.738 701 95 9 4922 5612 52155491 52156182 0.000000e+00 645.0
60 TraesCS5D01G053300 chr6A 83.731 670 87 13 3918 4569 569974211 569973546 1.300000e-171 614.0
61 TraesCS5D01G053300 chr6A 82.979 376 47 10 1563 1935 52152156 52152517 2.450000e-84 324.0
62 TraesCS5D01G053300 chr6A 76.938 516 90 22 5767 6261 12616996 12616489 4.180000e-67 267.0
63 TraesCS5D01G053300 chr6A 86.111 216 29 1 5766 5981 211633797 211633583 1.530000e-56 231.0
64 TraesCS5D01G053300 chr6A 85.385 130 16 1 5627 5756 52169719 52169845 1.590000e-26 132.0
65 TraesCS5D01G053300 chr6A 87.037 108 13 1 225 332 379187243 379187349 3.450000e-23 121.0
66 TraesCS5D01G053300 chr6A 90.110 91 9 0 1231 1321 52151245 52151335 1.240000e-22 119.0
67 TraesCS5D01G053300 chr1B 84.328 670 84 8 3918 4569 106769836 106769170 2.770000e-178 636.0
68 TraesCS5D01G053300 chr1B 86.355 535 58 9 4050 4569 10109374 10108840 2.850000e-158 569.0
69 TraesCS5D01G053300 chr1B 80.374 214 40 2 5768 5980 51229946 51230158 2.030000e-35 161.0
70 TraesCS5D01G053300 chr1B 88.393 112 11 2 225 336 404966997 404967106 4.430000e-27 134.0
71 TraesCS5D01G053300 chrUn 90.881 329 30 0 5041 5369 280936961 280937289 6.480000e-120 442.0
72 TraesCS5D01G053300 chrUn 79.861 288 22 19 1560 1822 30967880 30967604 2.020000e-40 178.0
73 TraesCS5D01G053300 chrUn 89.000 100 11 0 237 336 480942647 480942746 2.670000e-24 124.0
74 TraesCS5D01G053300 chr2B 82.342 521 58 22 1337 1839 247924199 247923695 8.440000e-114 422.0
75 TraesCS5D01G053300 chr2B 87.589 282 28 5 4291 4569 73382770 73382493 3.170000e-83 320.0
76 TraesCS5D01G053300 chr2B 83.395 271 39 4 2212 2479 247921125 247920858 5.450000e-61 246.0
77 TraesCS5D01G053300 chr2B 91.129 124 9 1 1 124 364952237 364952116 4.370000e-37 167.0
78 TraesCS5D01G053300 chr2B 87.970 133 15 1 208 340 188830805 188830674 9.450000e-34 156.0
79 TraesCS5D01G053300 chr3A 85.714 217 24 6 126 337 28595536 28595750 9.190000e-54 222.0
80 TraesCS5D01G053300 chr3A 93.548 124 8 0 1 124 28591826 28591949 1.210000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G053300 chr5D 50973600 50980636 7036 False 12995.000000 12995 100.000000 1 7037 1 chr5D.!!$F1 7036
1 TraesCS5D01G053300 chr5D 51322395 51323127 732 False 817.000000 817 87.193000 5041 5756 1 chr5D.!!$F5 715
2 TraesCS5D01G053300 chr5D 51245790 51246517 727 False 815.000000 815 87.243000 5045 5756 1 chr5D.!!$F4 711
3 TraesCS5D01G053300 chr5A 634471666 634472853 1187 False 1122.000000 1122 84.118000 3408 4567 1 chr5A.!!$F2 1159
4 TraesCS5D01G053300 chr5A 40468194 40475248 7054 False 1077.600000 2713 89.564600 941 5739 5 chr5A.!!$F3 4798
5 TraesCS5D01G053300 chr1A 295575262 295576546 1284 True 997.500000 1629 95.840500 5768 7037 2 chr1A.!!$R1 1269
6 TraesCS5D01G053300 chr5B 54193145 54197470 4325 False 1063.000000 1378 91.482250 934 5767 4 chr5B.!!$F4 4833
7 TraesCS5D01G053300 chr5B 54392615 54393347 732 False 830.000000 830 87.466000 5045 5761 1 chr5B.!!$F1 716
8 TraesCS5D01G053300 chr5B 588928412 588929088 676 False 590.000000 590 83.113000 3918 4569 1 chr5B.!!$F2 651
9 TraesCS5D01G053300 chr3D 608744880 608746049 1169 False 1181.000000 1181 85.123000 3408 4571 1 chr3D.!!$F1 1163
10 TraesCS5D01G053300 chr7D 576640223 576641386 1163 True 1142.000000 1142 84.635000 3411 4569 1 chr7D.!!$R2 1158
11 TraesCS5D01G053300 chr7D 178288609 178289793 1184 False 1136.000000 1136 84.383000 3408 4569 1 chr7D.!!$F3 1161
12 TraesCS5D01G053300 chr7D 193414602 193415765 1163 True 1131.000000 1131 84.452000 3411 4569 1 chr7D.!!$R1 1158
13 TraesCS5D01G053300 chr7D 52474431 52474999 568 False 575.000000 575 85.464000 4019 4570 1 chr7D.!!$F2 551
14 TraesCS5D01G053300 chr7B 687963349 687964511 1162 True 1109.000000 1109 84.126000 3410 4568 1 chr7B.!!$R2 1158
15 TraesCS5D01G053300 chr7B 451356939 451358134 1195 True 1022.000000 1022 82.710000 3411 4568 1 chr7B.!!$R1 1157
16 TraesCS5D01G053300 chr6B 599987353 599988525 1172 False 1092.000000 1092 83.811000 3408 4568 1 chr6B.!!$F2 1160
17 TraesCS5D01G053300 chr6B 55346621 55347284 663 False 630.000000 630 84.281000 3926 4573 1 chr6B.!!$F1 647
18 TraesCS5D01G053300 chr6B 126312261 126313088 827 True 573.000000 573 79.744000 2200 3035 1 chr6B.!!$R2 835
19 TraesCS5D01G053300 chr6B 95564347 95566758 2411 True 284.550000 472 84.993000 1234 1856 2 chr6B.!!$R3 622
20 TraesCS5D01G053300 chr2D 92864454 92865520 1066 False 1033.000000 1033 84.366000 3408 4473 1 chr2D.!!$F1 1065
21 TraesCS5D01G053300 chr2D 192747102 192753654 6552 False 411.000000 665 84.484500 967 5757 4 chr2D.!!$F3 4790
22 TraesCS5D01G053300 chr7A 119294365 119295548 1183 False 1007.000000 1007 82.412000 3408 4573 1 chr7A.!!$F2 1165
23 TraesCS5D01G053300 chr3B 31729825 31730727 902 False 846.000000 846 83.978000 3408 4290 1 chr3B.!!$F1 882
24 TraesCS5D01G053300 chr6D 41600731 41604342 3611 False 579.500000 787 83.719000 1559 5756 2 chr6D.!!$F1 4197
25 TraesCS5D01G053300 chr6D 56125726 56126554 828 True 569.000000 569 79.651000 2200 3036 1 chr6D.!!$R1 836
26 TraesCS5D01G053300 chr2A 205201308 205207908 6600 True 474.000000 701 85.341667 1337 5757 3 chr2A.!!$R1 4420
27 TraesCS5D01G053300 chr6A 569973546 569974211 665 True 614.000000 614 83.731000 3918 4569 1 chr6A.!!$R3 651
28 TraesCS5D01G053300 chr6A 52151245 52156182 4937 False 362.666667 645 85.609000 1231 5612 3 chr6A.!!$F3 4381
29 TraesCS5D01G053300 chr6A 12616489 12616996 507 True 267.000000 267 76.938000 5767 6261 1 chr6A.!!$R1 494
30 TraesCS5D01G053300 chr1B 106769170 106769836 666 True 636.000000 636 84.328000 3918 4569 1 chr1B.!!$R2 651
31 TraesCS5D01G053300 chr1B 10108840 10109374 534 True 569.000000 569 86.355000 4050 4569 1 chr1B.!!$R1 519
32 TraesCS5D01G053300 chr2B 247920858 247924199 3341 True 334.000000 422 82.868500 1337 2479 2 chr2B.!!$R4 1142
33 TraesCS5D01G053300 chr3A 28591826 28595750 3924 False 203.500000 222 89.631000 1 337 2 chr3A.!!$F1 336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 4442 0.033504 ACCAGACACGAAGCGACAAT 59.966 50.000 0.00 0.0 0.00 2.71 F
923 4513 0.037139 TGCCGCTACCTTCGCTAAAA 60.037 50.000 0.00 0.0 0.00 1.52 F
1331 4971 1.009829 GCGAAGGTGCCTCTAACATG 58.990 55.000 0.00 0.0 0.00 3.21 F
2421 12692 1.067212 GGATGACGATAACAGCGAGGT 59.933 52.381 0.00 0.0 0.00 3.85 F
2435 12790 1.260206 CGAGGTTGAAGACGATGACG 58.740 55.000 0.00 0.0 45.75 4.35 F
3615 17163 1.274728 TCTGGACAAGCTCTCTCTTGC 59.725 52.381 3.67 0.0 45.43 4.01 F
4415 18071 0.687920 TGTTGGCTATGGTTGTCGGA 59.312 50.000 0.00 0.0 0.00 4.55 F
5639 20241 2.679349 GCAGGAGTAAGAAGAGCAAGGG 60.679 54.545 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 8145 1.417890 CGATCCAAACAGCCCCTAGAT 59.582 52.381 0.00 0.00 0.00 1.98 R
2050 12132 3.512724 CGACTTTAGTTCCACCCTAAGGA 59.487 47.826 0.00 0.00 36.73 3.36 R
3244 16772 0.667993 TTGCAAAGCGGGAGTTTCAG 59.332 50.000 0.00 0.00 31.00 3.02 R
3649 17197 0.179073 CATCAACCTGCCTAGACGGG 60.179 60.000 1.69 1.69 42.28 5.28 R
3682 17302 0.181350 CTATTCTCCACTGGGCCACC 59.819 60.000 0.00 0.00 37.24 4.61 R
5231 19792 0.183492 TGTTATCTCCATGCCCTGGC 59.817 55.000 0.00 0.00 45.52 4.85 R
5687 20289 0.249868 CAACGTGGCTGAGAACCTCA 60.250 55.000 0.00 0.00 38.25 3.86 R
6689 21328 1.282157 AGCCCAAGAATAAACGAGCCT 59.718 47.619 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 3.286751 GCCAGGTTGCAGCGTGAA 61.287 61.111 22.62 0.00 0.00 3.18
94 95 1.675641 GGTTGCAGCGTGAAGGGAT 60.676 57.895 0.00 0.00 0.00 3.85
95 96 1.503542 GTTGCAGCGTGAAGGGATG 59.496 57.895 0.00 0.00 0.00 3.51
98 99 2.825836 CAGCGTGAAGGGATGGGC 60.826 66.667 0.00 0.00 0.00 5.36
117 118 2.202743 GCCGAGATGCAGCGTGTA 60.203 61.111 0.00 0.00 0.00 2.90
136 3722 0.950555 ACGTACGCAGTGGTCGTAGA 60.951 55.000 16.72 0.00 45.73 2.59
139 3725 1.028330 TACGCAGTGGTCGTAGAGGG 61.028 60.000 0.00 0.00 45.73 4.30
140 3726 2.044555 CGCAGTGGTCGTAGAGGGA 61.045 63.158 0.00 0.00 36.95 4.20
149 3735 1.741706 GTCGTAGAGGGAACGTCATCA 59.258 52.381 0.00 0.00 46.86 3.07
155 3741 1.459592 GAGGGAACGTCATCACAAACG 59.540 52.381 0.00 0.00 43.49 3.60
181 3768 0.179240 CGCAGTGCACGAAGATGTTC 60.179 55.000 16.83 0.00 0.00 3.18
192 3779 0.249120 AAGATGTTCGCCCGATGACA 59.751 50.000 0.00 0.00 0.00 3.58
195 3782 1.261619 GATGTTCGCCCGATGACATTC 59.738 52.381 8.77 1.59 33.21 2.67
204 3791 1.372582 CGATGACATTCCACCACTGG 58.627 55.000 0.00 0.00 39.23 4.00
205 3792 1.098050 GATGACATTCCACCACTGGC 58.902 55.000 0.00 0.00 37.49 4.85
206 3793 0.700564 ATGACATTCCACCACTGGCT 59.299 50.000 0.00 0.00 37.49 4.75
207 3794 0.478072 TGACATTCCACCACTGGCTT 59.522 50.000 0.00 0.00 37.49 4.35
208 3795 1.702401 TGACATTCCACCACTGGCTTA 59.298 47.619 0.00 0.00 37.49 3.09
210 3797 1.004745 ACATTCCACCACTGGCTTAGG 59.995 52.381 0.00 0.00 37.49 2.69
219 3809 2.239654 CCACTGGCTTAGGAGGAATCAA 59.760 50.000 0.00 0.00 0.00 2.57
254 3844 2.101249 TCTTTTGCAAACTGAAGGCTGG 59.899 45.455 12.39 0.00 0.00 4.85
256 3846 2.074230 TTGCAAACTGAAGGCTGGCG 62.074 55.000 0.00 0.00 0.00 5.69
258 3848 1.283793 CAAACTGAAGGCTGGCGTG 59.716 57.895 0.00 0.00 0.00 5.34
262 3852 4.577677 TGAAGGCTGGCGTGGCAA 62.578 61.111 0.00 0.00 34.73 4.52
264 3854 4.269523 AAGGCTGGCGTGGCAAGA 62.270 61.111 4.11 0.00 29.58 3.02
279 3869 1.814394 GCAAGATGCTGATGTGGACAA 59.186 47.619 0.00 0.00 40.96 3.18
292 3882 2.293955 TGTGGACAATGTGCATGTTGAG 59.706 45.455 11.40 0.00 36.11 3.02
294 3884 2.815503 TGGACAATGTGCATGTTGAGAG 59.184 45.455 17.58 0.00 0.00 3.20
300 3890 4.713824 ATGTGCATGTTGAGAGAATTGG 57.286 40.909 0.00 0.00 0.00 3.16
302 3892 4.650734 TGTGCATGTTGAGAGAATTGGTA 58.349 39.130 0.00 0.00 0.00 3.25
317 3907 5.672194 AGAATTGGTAGTAGTGGGGATCAAT 59.328 40.000 0.00 0.00 0.00 2.57
323 3913 6.674861 TGGTAGTAGTGGGGATCAATTTCTTA 59.325 38.462 0.00 0.00 0.00 2.10
325 3915 7.715686 GGTAGTAGTGGGGATCAATTTCTTAAG 59.284 40.741 0.00 0.00 0.00 1.85
329 3919 7.651027 AGTGGGGATCAATTTCTTAAGAATG 57.349 36.000 18.37 14.35 33.54 2.67
343 3933 7.630242 TCTTAAGAATGTAAGATTTGCAGGG 57.370 36.000 1.68 0.00 35.61 4.45
344 3934 4.725790 AAGAATGTAAGATTTGCAGGGC 57.274 40.909 0.00 0.00 0.00 5.19
345 3935 3.700538 AGAATGTAAGATTTGCAGGGCA 58.299 40.909 0.00 0.00 36.47 5.36
346 3936 3.445096 AGAATGTAAGATTTGCAGGGCAC 59.555 43.478 0.00 0.00 38.71 5.01
347 3937 1.164411 TGTAAGATTTGCAGGGCACG 58.836 50.000 0.00 0.00 38.71 5.34
348 3938 0.179163 GTAAGATTTGCAGGGCACGC 60.179 55.000 0.00 0.00 38.71 5.34
349 3939 0.322456 TAAGATTTGCAGGGCACGCT 60.322 50.000 4.52 0.00 38.71 5.07
350 3940 0.322456 AAGATTTGCAGGGCACGCTA 60.322 50.000 4.52 0.00 38.71 4.26
351 3941 1.026718 AGATTTGCAGGGCACGCTAC 61.027 55.000 4.52 0.00 38.71 3.58
352 3942 1.303236 ATTTGCAGGGCACGCTACA 60.303 52.632 4.52 0.00 38.71 2.74
353 3943 0.680921 ATTTGCAGGGCACGCTACAT 60.681 50.000 4.52 0.00 38.71 2.29
354 3944 1.585267 TTTGCAGGGCACGCTACATG 61.585 55.000 4.52 0.00 38.71 3.21
355 3945 3.204827 GCAGGGCACGCTACATGG 61.205 66.667 0.00 0.00 0.00 3.66
356 3946 2.514592 CAGGGCACGCTACATGGG 60.515 66.667 0.00 0.00 0.00 4.00
357 3947 4.489771 AGGGCACGCTACATGGGC 62.490 66.667 0.00 0.00 0.00 5.36
364 3954 4.175337 GCTACATGGGCCGGCTCA 62.175 66.667 35.14 35.14 0.00 4.26
365 3955 2.831770 CTACATGGGCCGGCTCAT 59.168 61.111 36.42 36.42 37.69 2.90
366 3956 1.302033 CTACATGGGCCGGCTCATC 60.302 63.158 38.95 15.99 34.41 2.92
367 3957 1.762522 CTACATGGGCCGGCTCATCT 61.763 60.000 38.95 29.92 34.41 2.90
368 3958 0.471022 TACATGGGCCGGCTCATCTA 60.471 55.000 38.95 28.71 34.41 1.98
369 3959 1.130054 ACATGGGCCGGCTCATCTAT 61.130 55.000 38.95 23.87 34.41 1.98
370 3960 0.675837 CATGGGCCGGCTCATCTATG 60.676 60.000 38.95 25.69 34.41 2.23
371 3961 1.845627 ATGGGCCGGCTCATCTATGG 61.846 60.000 36.42 0.00 29.90 2.74
372 3962 2.359230 GGCCGGCTCATCTATGGC 60.359 66.667 28.56 0.41 44.98 4.40
373 3963 2.746359 GCCGGCTCATCTATGGCT 59.254 61.111 22.15 0.00 42.44 4.75
374 3964 1.072159 GCCGGCTCATCTATGGCTT 59.928 57.895 22.15 0.00 42.44 4.35
375 3965 0.536006 GCCGGCTCATCTATGGCTTT 60.536 55.000 22.15 0.00 42.44 3.51
376 3966 1.517242 CCGGCTCATCTATGGCTTTC 58.483 55.000 0.00 0.00 0.00 2.62
377 3967 1.071385 CCGGCTCATCTATGGCTTTCT 59.929 52.381 0.00 0.00 0.00 2.52
378 3968 2.486191 CCGGCTCATCTATGGCTTTCTT 60.486 50.000 0.00 0.00 0.00 2.52
379 3969 2.805099 CGGCTCATCTATGGCTTTCTTC 59.195 50.000 0.00 0.00 0.00 2.87
380 3970 3.494048 CGGCTCATCTATGGCTTTCTTCT 60.494 47.826 0.00 0.00 0.00 2.85
381 3971 4.459330 GGCTCATCTATGGCTTTCTTCTT 58.541 43.478 0.00 0.00 0.00 2.52
382 3972 4.514816 GGCTCATCTATGGCTTTCTTCTTC 59.485 45.833 0.00 0.00 0.00 2.87
383 3973 5.121811 GCTCATCTATGGCTTTCTTCTTCA 58.878 41.667 0.00 0.00 0.00 3.02
384 3974 5.764192 GCTCATCTATGGCTTTCTTCTTCAT 59.236 40.000 0.00 0.00 0.00 2.57
385 3975 6.262720 GCTCATCTATGGCTTTCTTCTTCATT 59.737 38.462 0.00 0.00 0.00 2.57
386 3976 7.201803 GCTCATCTATGGCTTTCTTCTTCATTT 60.202 37.037 0.00 0.00 0.00 2.32
387 3977 8.218338 TCATCTATGGCTTTCTTCTTCATTTC 57.782 34.615 0.00 0.00 0.00 2.17
388 3978 8.051535 TCATCTATGGCTTTCTTCTTCATTTCT 58.948 33.333 0.00 0.00 0.00 2.52
389 3979 8.684520 CATCTATGGCTTTCTTCTTCATTTCTT 58.315 33.333 0.00 0.00 0.00 2.52
390 3980 8.641498 TCTATGGCTTTCTTCTTCATTTCTTT 57.359 30.769 0.00 0.00 0.00 2.52
391 3981 8.734386 TCTATGGCTTTCTTCTTCATTTCTTTC 58.266 33.333 0.00 0.00 0.00 2.62
392 3982 6.966534 TGGCTTTCTTCTTCATTTCTTTCT 57.033 33.333 0.00 0.00 0.00 2.52
393 3983 6.974965 TGGCTTTCTTCTTCATTTCTTTCTC 58.025 36.000 0.00 0.00 0.00 2.87
394 3984 6.015940 TGGCTTTCTTCTTCATTTCTTTCTCC 60.016 38.462 0.00 0.00 0.00 3.71
395 3985 6.082984 GCTTTCTTCTTCATTTCTTTCTCCG 58.917 40.000 0.00 0.00 0.00 4.63
396 3986 6.560253 TTTCTTCTTCATTTCTTTCTCCGG 57.440 37.500 0.00 0.00 0.00 5.14
397 3987 5.228945 TCTTCTTCATTTCTTTCTCCGGT 57.771 39.130 0.00 0.00 0.00 5.28
398 3988 5.621193 TCTTCTTCATTTCTTTCTCCGGTT 58.379 37.500 0.00 0.00 0.00 4.44
399 3989 6.062095 TCTTCTTCATTTCTTTCTCCGGTTT 58.938 36.000 0.00 0.00 0.00 3.27
400 3990 5.689383 TCTTCATTTCTTTCTCCGGTTTG 57.311 39.130 0.00 0.00 0.00 2.93
401 3991 5.130350 TCTTCATTTCTTTCTCCGGTTTGT 58.870 37.500 0.00 0.00 0.00 2.83
402 3992 5.592688 TCTTCATTTCTTTCTCCGGTTTGTT 59.407 36.000 0.00 0.00 0.00 2.83
403 3993 6.768861 TCTTCATTTCTTTCTCCGGTTTGTTA 59.231 34.615 0.00 0.00 0.00 2.41
404 3994 6.554334 TCATTTCTTTCTCCGGTTTGTTAG 57.446 37.500 0.00 0.00 0.00 2.34
405 3995 6.292923 TCATTTCTTTCTCCGGTTTGTTAGA 58.707 36.000 0.00 0.00 0.00 2.10
406 3996 6.426937 TCATTTCTTTCTCCGGTTTGTTAGAG 59.573 38.462 0.00 0.00 0.00 2.43
407 3997 4.267349 TCTTTCTCCGGTTTGTTAGAGG 57.733 45.455 0.00 0.00 0.00 3.69
408 3998 2.467566 TTCTCCGGTTTGTTAGAGGC 57.532 50.000 0.00 0.00 0.00 4.70
409 3999 1.640917 TCTCCGGTTTGTTAGAGGCT 58.359 50.000 0.00 0.00 0.00 4.58
410 4000 1.975680 TCTCCGGTTTGTTAGAGGCTT 59.024 47.619 0.00 0.00 0.00 4.35
411 4001 2.370849 TCTCCGGTTTGTTAGAGGCTTT 59.629 45.455 0.00 0.00 0.00 3.51
412 4002 3.146847 CTCCGGTTTGTTAGAGGCTTTT 58.853 45.455 0.00 0.00 0.00 2.27
413 4003 2.882137 TCCGGTTTGTTAGAGGCTTTTG 59.118 45.455 0.00 0.00 0.00 2.44
414 4004 2.621526 CCGGTTTGTTAGAGGCTTTTGT 59.378 45.455 0.00 0.00 0.00 2.83
415 4005 3.550030 CCGGTTTGTTAGAGGCTTTTGTG 60.550 47.826 0.00 0.00 0.00 3.33
416 4006 3.550030 CGGTTTGTTAGAGGCTTTTGTGG 60.550 47.826 0.00 0.00 0.00 4.17
417 4007 3.383505 GGTTTGTTAGAGGCTTTTGTGGT 59.616 43.478 0.00 0.00 0.00 4.16
418 4008 4.142026 GGTTTGTTAGAGGCTTTTGTGGTT 60.142 41.667 0.00 0.00 0.00 3.67
419 4009 5.416083 GTTTGTTAGAGGCTTTTGTGGTTT 58.584 37.500 0.00 0.00 0.00 3.27
420 4010 4.911514 TGTTAGAGGCTTTTGTGGTTTC 57.088 40.909 0.00 0.00 0.00 2.78
421 4011 3.634910 TGTTAGAGGCTTTTGTGGTTTCC 59.365 43.478 0.00 0.00 0.00 3.13
422 4012 2.452600 AGAGGCTTTTGTGGTTTCCA 57.547 45.000 0.00 0.00 0.00 3.53
423 4013 2.745968 AGAGGCTTTTGTGGTTTCCAA 58.254 42.857 0.00 0.00 34.18 3.53
424 4014 2.430694 AGAGGCTTTTGTGGTTTCCAAC 59.569 45.455 0.00 0.00 34.18 3.77
433 4023 2.637521 GGTTTCCAACCGGTCTTCC 58.362 57.895 8.04 1.26 42.62 3.46
434 4024 0.109913 GGTTTCCAACCGGTCTTCCT 59.890 55.000 8.04 0.00 42.62 3.36
435 4025 1.520494 GTTTCCAACCGGTCTTCCTC 58.480 55.000 8.04 0.00 0.00 3.71
436 4026 1.071857 GTTTCCAACCGGTCTTCCTCT 59.928 52.381 8.04 0.00 0.00 3.69
437 4027 1.430992 TTCCAACCGGTCTTCCTCTT 58.569 50.000 8.04 0.00 0.00 2.85
438 4028 0.685097 TCCAACCGGTCTTCCTCTTG 59.315 55.000 8.04 0.00 0.00 3.02
439 4029 0.396811 CCAACCGGTCTTCCTCTTGT 59.603 55.000 8.04 0.00 0.00 3.16
440 4030 1.608283 CCAACCGGTCTTCCTCTTGTC 60.608 57.143 8.04 0.00 0.00 3.18
441 4031 1.344763 CAACCGGTCTTCCTCTTGTCT 59.655 52.381 8.04 0.00 0.00 3.41
442 4032 1.258676 ACCGGTCTTCCTCTTGTCTC 58.741 55.000 0.00 0.00 0.00 3.36
443 4033 1.203075 ACCGGTCTTCCTCTTGTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
444 4034 1.896465 CCGGTCTTCCTCTTGTCTCTT 59.104 52.381 0.00 0.00 0.00 2.85
445 4035 2.300437 CCGGTCTTCCTCTTGTCTCTTT 59.700 50.000 0.00 0.00 0.00 2.52
446 4036 3.244249 CCGGTCTTCCTCTTGTCTCTTTT 60.244 47.826 0.00 0.00 0.00 2.27
447 4037 3.991121 CGGTCTTCCTCTTGTCTCTTTTC 59.009 47.826 0.00 0.00 0.00 2.29
448 4038 4.320023 GGTCTTCCTCTTGTCTCTTTTCC 58.680 47.826 0.00 0.00 0.00 3.13
449 4039 4.041075 GGTCTTCCTCTTGTCTCTTTTCCT 59.959 45.833 0.00 0.00 0.00 3.36
450 4040 4.994217 GTCTTCCTCTTGTCTCTTTTCCTG 59.006 45.833 0.00 0.00 0.00 3.86
451 4041 3.409026 TCCTCTTGTCTCTTTTCCTGC 57.591 47.619 0.00 0.00 0.00 4.85
452 4042 2.705658 TCCTCTTGTCTCTTTTCCTGCA 59.294 45.455 0.00 0.00 0.00 4.41
453 4043 3.072944 CCTCTTGTCTCTTTTCCTGCAG 58.927 50.000 6.78 6.78 0.00 4.41
454 4044 3.072944 CTCTTGTCTCTTTTCCTGCAGG 58.927 50.000 27.87 27.87 0.00 4.85
455 4045 2.705658 TCTTGTCTCTTTTCCTGCAGGA 59.294 45.455 32.00 32.00 43.73 3.86
456 4046 3.328931 TCTTGTCTCTTTTCCTGCAGGAT 59.671 43.478 35.42 0.00 44.98 3.24
457 4047 3.795688 TGTCTCTTTTCCTGCAGGATT 57.204 42.857 35.42 0.00 44.98 3.01
458 4048 4.104383 TGTCTCTTTTCCTGCAGGATTT 57.896 40.909 35.42 0.00 44.98 2.17
459 4049 4.074970 TGTCTCTTTTCCTGCAGGATTTC 58.925 43.478 35.42 20.03 44.98 2.17
460 4050 3.126000 GTCTCTTTTCCTGCAGGATTTCG 59.874 47.826 35.42 22.42 44.98 3.46
461 4051 3.007940 TCTCTTTTCCTGCAGGATTTCGA 59.992 43.478 35.42 24.91 44.98 3.71
462 4052 3.074412 TCTTTTCCTGCAGGATTTCGAC 58.926 45.455 35.42 0.00 44.98 4.20
463 4053 2.859165 TTTCCTGCAGGATTTCGACT 57.141 45.000 35.42 0.00 44.98 4.18
464 4054 2.099141 TTCCTGCAGGATTTCGACTG 57.901 50.000 35.42 4.52 44.98 3.51
465 4055 0.250234 TCCTGCAGGATTTCGACTGG 59.750 55.000 32.00 2.15 39.78 4.00
466 4056 0.036010 CCTGCAGGATTTCGACTGGT 60.036 55.000 29.88 0.00 37.39 4.00
467 4057 1.611673 CCTGCAGGATTTCGACTGGTT 60.612 52.381 29.88 0.00 37.39 3.67
468 4058 2.154462 CTGCAGGATTTCGACTGGTTT 58.846 47.619 5.57 0.00 35.30 3.27
469 4059 2.554032 CTGCAGGATTTCGACTGGTTTT 59.446 45.455 5.57 0.00 35.30 2.43
470 4060 2.955660 TGCAGGATTTCGACTGGTTTTT 59.044 40.909 3.29 0.00 35.30 1.94
471 4061 4.138290 TGCAGGATTTCGACTGGTTTTTA 58.862 39.130 3.29 0.00 35.30 1.52
472 4062 4.764823 TGCAGGATTTCGACTGGTTTTTAT 59.235 37.500 3.29 0.00 35.30 1.40
473 4063 5.242838 TGCAGGATTTCGACTGGTTTTTATT 59.757 36.000 3.29 0.00 35.30 1.40
474 4064 6.156519 GCAGGATTTCGACTGGTTTTTATTT 58.843 36.000 3.29 0.00 35.30 1.40
475 4065 6.645003 GCAGGATTTCGACTGGTTTTTATTTT 59.355 34.615 3.29 0.00 35.30 1.82
476 4066 7.810759 GCAGGATTTCGACTGGTTTTTATTTTA 59.189 33.333 3.29 0.00 35.30 1.52
477 4067 9.855021 CAGGATTTCGACTGGTTTTTATTTTAT 57.145 29.630 0.00 0.00 0.00 1.40
569 4159 9.672673 TTTCCAAGTTTGAAAAATTTATGGACA 57.327 25.926 0.00 0.00 0.00 4.02
570 4160 9.844257 TTCCAAGTTTGAAAAATTTATGGACAT 57.156 25.926 0.00 0.00 0.00 3.06
571 4161 9.844257 TCCAAGTTTGAAAAATTTATGGACATT 57.156 25.926 0.00 0.00 0.00 2.71
589 4179 9.962809 ATGGACATTTTGTTAAATCCATGATTT 57.037 25.926 2.82 7.19 39.76 2.17
590 4180 9.790344 TGGACATTTTGTTAAATCCATGATTTT 57.210 25.926 7.31 0.00 41.64 1.82
750 4340 9.643652 TTTTCAAAATTGTGAACATTTAATCGC 57.356 25.926 10.70 0.00 37.24 4.58
751 4341 7.936950 TCAAAATTGTGAACATTTAATCGCA 57.063 28.000 0.00 0.00 34.48 5.10
752 4342 8.357796 TCAAAATTGTGAACATTTAATCGCAA 57.642 26.923 0.00 5.50 46.45 4.85
753 4343 8.272176 TCAAAATTGTGAACATTTAATCGCAAC 58.728 29.630 0.00 0.00 45.57 4.17
754 4344 7.706281 AAATTGTGAACATTTAATCGCAACA 57.294 28.000 5.22 0.00 45.57 3.33
755 4345 7.887996 AATTGTGAACATTTAATCGCAACAT 57.112 28.000 5.22 0.00 45.57 2.71
756 4346 8.978564 AATTGTGAACATTTAATCGCAACATA 57.021 26.923 5.22 0.00 45.57 2.29
757 4347 9.585099 AATTGTGAACATTTAATCGCAACATAT 57.415 25.926 5.22 0.00 45.57 1.78
782 4372 9.883142 ATATTTAAGAAATTCAAAAATCGGGCA 57.117 25.926 8.25 0.00 32.38 5.36
783 4373 8.791327 ATTTAAGAAATTCAAAAATCGGGCAT 57.209 26.923 0.00 0.00 0.00 4.40
784 4374 7.593875 TTAAGAAATTCAAAAATCGGGCATG 57.406 32.000 0.00 0.00 0.00 4.06
785 4375 5.404466 AGAAATTCAAAAATCGGGCATGA 57.596 34.783 0.00 0.00 0.00 3.07
786 4376 5.792741 AGAAATTCAAAAATCGGGCATGAA 58.207 33.333 0.00 0.00 34.80 2.57
787 4377 5.639082 AGAAATTCAAAAATCGGGCATGAAC 59.361 36.000 0.00 0.00 33.29 3.18
788 4378 3.311486 TTCAAAAATCGGGCATGAACC 57.689 42.857 0.00 0.00 0.00 3.62
789 4379 2.524306 TCAAAAATCGGGCATGAACCT 58.476 42.857 0.00 0.00 0.00 3.50
790 4380 2.896685 TCAAAAATCGGGCATGAACCTT 59.103 40.909 0.00 0.00 0.00 3.50
791 4381 3.323403 TCAAAAATCGGGCATGAACCTTT 59.677 39.130 0.00 0.00 0.00 3.11
792 4382 4.064388 CAAAAATCGGGCATGAACCTTTT 58.936 39.130 0.00 0.00 0.00 2.27
793 4383 4.350368 AAAATCGGGCATGAACCTTTTT 57.650 36.364 0.00 4.56 0.00 1.94
816 4406 5.913137 TTTAGGCAACATGAACCTATTGG 57.087 39.130 0.00 0.00 35.99 3.16
817 4407 3.456380 AGGCAACATGAACCTATTGGT 57.544 42.857 0.00 0.00 45.63 3.67
818 4408 3.091545 AGGCAACATGAACCTATTGGTG 58.908 45.455 0.00 0.00 43.43 4.17
825 4415 4.301505 ACCTATTGGTGCGCACAG 57.698 55.556 38.60 27.07 46.51 3.66
826 4416 2.040544 ACCTATTGGTGCGCACAGC 61.041 57.895 38.60 24.27 46.51 4.40
835 4425 4.700365 GCGCACAGCCGGAAAACC 62.700 66.667 5.05 0.00 40.81 3.27
836 4426 3.283684 CGCACAGCCGGAAAACCA 61.284 61.111 5.05 0.00 0.00 3.67
837 4427 2.644992 GCACAGCCGGAAAACCAG 59.355 61.111 5.05 0.00 0.00 4.00
838 4428 1.896660 GCACAGCCGGAAAACCAGA 60.897 57.895 5.05 0.00 0.00 3.86
839 4429 1.949257 CACAGCCGGAAAACCAGAC 59.051 57.895 5.05 0.00 0.00 3.51
840 4430 0.817634 CACAGCCGGAAAACCAGACA 60.818 55.000 5.05 0.00 0.00 3.41
841 4431 0.818040 ACAGCCGGAAAACCAGACAC 60.818 55.000 5.05 0.00 0.00 3.67
842 4432 1.597027 AGCCGGAAAACCAGACACG 60.597 57.895 5.05 0.00 0.00 4.49
843 4433 1.595929 GCCGGAAAACCAGACACGA 60.596 57.895 5.05 0.00 0.00 4.35
844 4434 1.161563 GCCGGAAAACCAGACACGAA 61.162 55.000 5.05 0.00 0.00 3.85
845 4435 0.865769 CCGGAAAACCAGACACGAAG 59.134 55.000 0.00 0.00 0.00 3.79
846 4436 0.234884 CGGAAAACCAGACACGAAGC 59.765 55.000 0.00 0.00 0.00 3.86
847 4437 0.234884 GGAAAACCAGACACGAAGCG 59.765 55.000 0.00 0.00 0.00 4.68
848 4438 1.214367 GAAAACCAGACACGAAGCGA 58.786 50.000 0.00 0.00 0.00 4.93
849 4439 0.935196 AAAACCAGACACGAAGCGAC 59.065 50.000 0.00 0.00 0.00 5.19
850 4440 0.179094 AAACCAGACACGAAGCGACA 60.179 50.000 0.00 0.00 0.00 4.35
851 4441 0.179094 AACCAGACACGAAGCGACAA 60.179 50.000 0.00 0.00 0.00 3.18
852 4442 0.033504 ACCAGACACGAAGCGACAAT 59.966 50.000 0.00 0.00 0.00 2.71
853 4443 0.439985 CCAGACACGAAGCGACAATG 59.560 55.000 0.00 0.00 0.00 2.82
854 4444 0.439985 CAGACACGAAGCGACAATGG 59.560 55.000 0.00 0.00 0.00 3.16
855 4445 0.670546 AGACACGAAGCGACAATGGG 60.671 55.000 0.00 0.00 0.00 4.00
856 4446 2.240612 GACACGAAGCGACAATGGGC 62.241 60.000 0.00 0.00 0.00 5.36
857 4447 2.746277 ACGAAGCGACAATGGGCC 60.746 61.111 0.00 0.00 0.00 5.80
858 4448 2.745884 CGAAGCGACAATGGGCCA 60.746 61.111 9.61 9.61 0.00 5.36
859 4449 2.753966 CGAAGCGACAATGGGCCAG 61.754 63.158 13.78 0.82 0.00 4.85
860 4450 3.056313 GAAGCGACAATGGGCCAGC 62.056 63.158 13.78 9.76 0.00 4.85
871 4461 3.357079 GGCCAGCCCATAATCGCG 61.357 66.667 0.00 0.00 0.00 5.87
872 4462 2.591715 GCCAGCCCATAATCGCGT 60.592 61.111 5.77 0.00 0.00 6.01
873 4463 2.896801 GCCAGCCCATAATCGCGTG 61.897 63.158 5.77 0.00 0.00 5.34
874 4464 2.253758 CCAGCCCATAATCGCGTGG 61.254 63.158 5.77 6.20 35.22 4.94
875 4465 1.227527 CAGCCCATAATCGCGTGGA 60.228 57.895 14.52 0.00 37.72 4.02
876 4466 0.813610 CAGCCCATAATCGCGTGGAA 60.814 55.000 14.52 0.00 37.72 3.53
877 4467 0.814010 AGCCCATAATCGCGTGGAAC 60.814 55.000 14.52 6.69 37.72 3.62
878 4468 1.092921 GCCCATAATCGCGTGGAACA 61.093 55.000 14.52 0.00 37.72 3.18
892 4482 2.532843 TGGAACACTACAGGAGTACCC 58.467 52.381 0.00 0.00 35.64 3.69
893 4483 1.829849 GGAACACTACAGGAGTACCCC 59.170 57.143 0.00 0.00 35.64 4.95
894 4484 2.559252 GGAACACTACAGGAGTACCCCT 60.559 54.545 0.00 0.00 35.64 4.79
901 4491 2.990066 CAGGAGTACCCCTGTCAATC 57.010 55.000 15.07 0.00 46.62 2.67
902 4492 1.486726 CAGGAGTACCCCTGTCAATCC 59.513 57.143 15.07 0.00 46.62 3.01
903 4493 0.837940 GGAGTACCCCTGTCAATCCC 59.162 60.000 0.00 0.00 0.00 3.85
904 4494 1.625508 GGAGTACCCCTGTCAATCCCT 60.626 57.143 0.00 0.00 0.00 4.20
905 4495 1.486726 GAGTACCCCTGTCAATCCCTG 59.513 57.143 0.00 0.00 0.00 4.45
906 4496 0.107165 GTACCCCTGTCAATCCCTGC 60.107 60.000 0.00 0.00 0.00 4.85
907 4497 1.279025 TACCCCTGTCAATCCCTGCC 61.279 60.000 0.00 0.00 0.00 4.85
908 4498 2.124570 CCCTGTCAATCCCTGCCG 60.125 66.667 0.00 0.00 0.00 5.69
909 4499 2.825836 CCTGTCAATCCCTGCCGC 60.826 66.667 0.00 0.00 0.00 6.53
910 4500 2.270205 CTGTCAATCCCTGCCGCT 59.730 61.111 0.00 0.00 0.00 5.52
911 4501 1.522092 CTGTCAATCCCTGCCGCTA 59.478 57.895 0.00 0.00 0.00 4.26
912 4502 0.811616 CTGTCAATCCCTGCCGCTAC 60.812 60.000 0.00 0.00 0.00 3.58
913 4503 1.523938 GTCAATCCCTGCCGCTACC 60.524 63.158 0.00 0.00 0.00 3.18
914 4504 1.689233 TCAATCCCTGCCGCTACCT 60.689 57.895 0.00 0.00 0.00 3.08
915 4505 1.224592 CAATCCCTGCCGCTACCTT 59.775 57.895 0.00 0.00 0.00 3.50
916 4506 0.815615 CAATCCCTGCCGCTACCTTC 60.816 60.000 0.00 0.00 0.00 3.46
917 4507 2.311688 AATCCCTGCCGCTACCTTCG 62.312 60.000 0.00 0.00 0.00 3.79
919 4509 4.148825 CCTGCCGCTACCTTCGCT 62.149 66.667 0.00 0.00 0.00 4.93
920 4510 2.782222 CCTGCCGCTACCTTCGCTA 61.782 63.158 0.00 0.00 0.00 4.26
921 4511 1.141019 CTGCCGCTACCTTCGCTAA 59.859 57.895 0.00 0.00 0.00 3.09
922 4512 0.459585 CTGCCGCTACCTTCGCTAAA 60.460 55.000 0.00 0.00 0.00 1.85
923 4513 0.037139 TGCCGCTACCTTCGCTAAAA 60.037 50.000 0.00 0.00 0.00 1.52
924 4514 1.081094 GCCGCTACCTTCGCTAAAAA 58.919 50.000 0.00 0.00 0.00 1.94
1076 4672 9.189723 GAAATCAAACTCCAAGAATGAGAAAAG 57.810 33.333 0.00 0.00 33.95 2.27
1182 4802 2.878406 CAAGAAGCCCAAGAACGAGAAA 59.122 45.455 0.00 0.00 0.00 2.52
1291 4931 3.204418 GGACCGACCCTAGGTTCG 58.796 66.667 20.96 20.96 43.01 3.95
1321 4961 2.436824 GGAAGGAGGCGAAGGTGC 60.437 66.667 0.00 0.00 0.00 5.01
1331 4971 1.009829 GCGAAGGTGCCTCTAACATG 58.990 55.000 0.00 0.00 0.00 3.21
1343 7544 3.865745 CCTCTAACATGGCTACAAGAACG 59.134 47.826 0.00 0.00 0.00 3.95
1349 7550 3.689649 ACATGGCTACAAGAACGATTTCC 59.310 43.478 0.00 0.00 31.28 3.13
1433 7648 1.855295 TGCCAGTACGGGTCTTATGA 58.145 50.000 13.86 0.00 34.06 2.15
1438 7653 4.495422 CCAGTACGGGTCTTATGATATGC 58.505 47.826 3.54 0.00 0.00 3.14
1503 7718 2.940410 ACGGGACACTTTGTTAGTTGTG 59.060 45.455 0.00 0.00 33.85 3.33
2050 12132 1.139853 GCAGGGGATCTGAATTCGAGT 59.860 52.381 0.04 0.00 46.18 4.18
2072 12154 3.512724 TCCTTAGGGTGGAACTAAAGTCG 59.487 47.826 0.00 0.00 36.74 4.18
2266 12516 6.994496 ACTTGTATATGGTGATGACATCTTGG 59.006 38.462 16.25 0.00 0.00 3.61
2421 12692 1.067212 GGATGACGATAACAGCGAGGT 59.933 52.381 0.00 0.00 0.00 3.85
2435 12790 1.260206 CGAGGTTGAAGACGATGACG 58.740 55.000 0.00 0.00 45.75 4.35
2553 12908 7.147846 ACCAATAAGGCACAGAGATATTTTTGG 60.148 37.037 0.00 0.00 43.14 3.28
2645 14691 6.235231 ACCATACTCCATAATCTTCACGTT 57.765 37.500 0.00 0.00 0.00 3.99
2646 14692 6.049149 ACCATACTCCATAATCTTCACGTTG 58.951 40.000 0.00 0.00 0.00 4.10
2651 14697 7.360575 ACTCCATAATCTTCACGTTGTTAAC 57.639 36.000 0.00 0.00 0.00 2.01
2652 14698 7.159372 ACTCCATAATCTTCACGTTGTTAACT 58.841 34.615 7.22 0.00 0.00 2.24
2653 14699 7.660208 ACTCCATAATCTTCACGTTGTTAACTT 59.340 33.333 7.22 0.00 0.00 2.66
2654 14700 8.025243 TCCATAATCTTCACGTTGTTAACTTC 57.975 34.615 7.22 0.00 0.00 3.01
2775 15466 6.016777 GTCCATCCATCTTTCATATGAACCAC 60.017 42.308 17.76 0.13 33.13 4.16
2776 15467 5.829391 CCATCCATCTTTCATATGAACCACA 59.171 40.000 17.76 2.62 33.13 4.17
2793 15965 6.096141 TGAACCACACATGAAAATGTTACTGT 59.904 34.615 0.00 0.00 31.37 3.55
2887 16075 3.809832 GCAACTGCGAATCACCTATACAT 59.190 43.478 0.00 0.00 0.00 2.29
2898 16086 8.515414 CGAATCACCTATACATGACTCTTGATA 58.485 37.037 0.00 0.00 0.00 2.15
2934 16122 4.505922 TGAAAACGGCAAATGTGTTTGATC 59.494 37.500 5.17 0.00 46.03 2.92
3244 16772 4.406003 TCCTAGTTACAAGGAGCCTGATTC 59.594 45.833 0.00 0.00 38.24 2.52
3284 16812 3.326747 ACCTAGCAAAGTTAAGCTCACG 58.673 45.455 6.06 0.00 42.05 4.35
3328 16859 4.158025 TCGTAAGATCTTGAGGTGGAAGTC 59.842 45.833 18.47 0.00 45.01 3.01
3438 16970 2.505982 CGATGGAATCCACGCCCT 59.494 61.111 3.09 0.00 41.39 5.19
3541 17089 1.548269 GCAGTCCACTCTAGCAACTCT 59.452 52.381 0.00 0.00 0.00 3.24
3542 17090 2.416701 GCAGTCCACTCTAGCAACTCTC 60.417 54.545 0.00 0.00 0.00 3.20
3545 17093 3.085533 GTCCACTCTAGCAACTCTCAGA 58.914 50.000 0.00 0.00 0.00 3.27
3615 17163 1.274728 TCTGGACAAGCTCTCTCTTGC 59.725 52.381 3.67 0.00 45.43 4.01
3649 17197 3.807538 TCCACTCCTACGTCGCGC 61.808 66.667 0.00 0.00 0.00 6.86
3681 17301 1.412343 GGTTGATGTTGTTGGTGGCTT 59.588 47.619 0.00 0.00 0.00 4.35
3682 17302 2.472816 GTTGATGTTGTTGGTGGCTTG 58.527 47.619 0.00 0.00 0.00 4.01
3683 17303 1.039068 TGATGTTGTTGGTGGCTTGG 58.961 50.000 0.00 0.00 0.00 3.61
3684 17304 1.039856 GATGTTGTTGGTGGCTTGGT 58.960 50.000 0.00 0.00 0.00 3.67
3685 17305 0.752054 ATGTTGTTGGTGGCTTGGTG 59.248 50.000 0.00 0.00 0.00 4.17
3686 17306 1.326213 TGTTGTTGGTGGCTTGGTGG 61.326 55.000 0.00 0.00 0.00 4.61
3687 17307 2.430610 TTGTTGGTGGCTTGGTGGC 61.431 57.895 0.00 0.00 42.18 5.01
3705 17325 1.839894 CCCAGTGGAGAATAGGGGC 59.160 63.158 11.95 0.00 35.83 5.80
3762 17382 2.863739 GACAACTCGTCATCGATGTCA 58.136 47.619 24.09 3.86 46.42 3.58
3796 17416 2.358125 CCATTGCCGTGGTCGTCA 60.358 61.111 0.00 0.00 34.46 4.35
3890 17510 2.514824 GGAGGTTGGCTCATCGGC 60.515 66.667 0.00 0.00 38.97 5.54
3969 17600 1.819903 TCCATCGTGTCGGTGTTATCA 59.180 47.619 1.94 0.00 36.10 2.15
3987 17618 3.639672 TCAGTGGCTGATGATGTTGAT 57.360 42.857 0.00 0.00 35.39 2.57
4012 17643 4.024048 CGGTCAATACATTGGTGCCTAATC 60.024 45.833 2.26 0.00 38.30 1.75
4281 17921 1.547372 GCTGCTTGATGGTTGGTCATT 59.453 47.619 0.00 0.00 0.00 2.57
4290 17930 5.734720 TGATGGTTGGTCATTAGTCTCTTC 58.265 41.667 0.00 0.00 0.00 2.87
4321 17976 0.964860 TCATGGATTTGGTGGTGCCG 60.965 55.000 0.00 0.00 41.21 5.69
4415 18071 0.687920 TGTTGGCTATGGTTGTCGGA 59.312 50.000 0.00 0.00 0.00 4.55
4421 18077 3.214328 GGCTATGGTTGTCGGATTGATT 58.786 45.455 0.00 0.00 0.00 2.57
4456 18112 3.677148 GCTTGCATGCTCTGTGAGTAGTA 60.677 47.826 20.33 0.00 31.39 1.82
4478 18134 4.211125 ACACATGTGGTTGGTTTGTATCA 58.789 39.130 28.64 0.00 34.19 2.15
4559 18235 3.130633 GCAAATCTTTTGCCTCCGTTTT 58.869 40.909 12.74 0.00 39.38 2.43
4663 18674 5.726980 TGAGAGCCTAACATTGCAAAATT 57.273 34.783 1.71 3.29 0.00 1.82
4669 18680 5.934043 AGCCTAACATTGCAAAATTTCTTCC 59.066 36.000 1.71 0.00 0.00 3.46
4677 18688 8.584157 ACATTGCAAAATTTCTTCCTACATACA 58.416 29.630 1.71 0.00 0.00 2.29
4748 18759 8.075574 TGCTGTTCTTACAAAATCACATAACTG 58.924 33.333 0.00 0.00 32.92 3.16
4773 18784 3.851098 GTTTGCTGTTGTTACAAACCCA 58.149 40.909 0.00 0.00 44.60 4.51
4774 18785 3.791973 TTGCTGTTGTTACAAACCCAG 57.208 42.857 0.00 4.66 32.92 4.45
4800 18811 3.213206 ACTGTCAGGACAAGCATTCAA 57.787 42.857 4.53 0.00 41.33 2.69
4819 18830 9.534565 GCATTCAACACTAGTGAATAATAGAGA 57.465 33.333 29.30 9.61 31.84 3.10
5231 19792 2.738846 CTGACGAGGAACAAAGTGATGG 59.261 50.000 0.00 0.00 0.00 3.51
5313 19874 3.191581 AGAGAAAGAGCATCGAGACGAAA 59.808 43.478 0.00 0.00 42.67 3.46
5478 20048 5.833131 AGAAGTTAGGCCAATCAAGAAACAA 59.167 36.000 5.01 0.00 0.00 2.83
5632 20234 5.790593 ACATAAAACGCAGGAGTAAGAAGA 58.209 37.500 0.00 0.00 0.00 2.87
5639 20241 2.679349 GCAGGAGTAAGAAGAGCAAGGG 60.679 54.545 0.00 0.00 0.00 3.95
5668 20270 4.065088 CGAGGACAAACTTCCTGAAATCA 58.935 43.478 0.00 0.00 46.80 2.57
5687 20289 9.399797 TGAAATCAATATTAGCACAGATGACTT 57.600 29.630 0.00 0.00 0.00 3.01
5710 20312 1.300620 TTCTCAGCCACGTTGACGG 60.301 57.895 8.52 0.00 44.95 4.79
5761 20363 3.104512 CCCCAGTACAAGAGGTATCACA 58.895 50.000 0.00 0.00 33.76 3.58
5801 20403 0.671781 GATCACGAGCACACAGGCTT 60.672 55.000 0.00 0.00 45.99 4.35
5820 20422 1.956629 TTCGGAATCTGTCCCGCTCC 61.957 60.000 0.00 0.00 44.60 4.70
6075 20711 0.462759 GCTGCCGCTCTGGTTCTATT 60.463 55.000 0.00 0.00 41.21 1.73
6104 20740 4.700365 GGCGGCGAAACCACAAGC 62.700 66.667 12.98 0.00 39.03 4.01
6108 20744 1.507141 CGGCGAAACCACAAGCTCTT 61.507 55.000 0.00 0.00 39.03 2.85
6162 20798 2.159282 GGAGTTCTTGATGCAGCCATTG 60.159 50.000 0.00 0.00 0.00 2.82
6170 20806 1.133790 GATGCAGCCATTGAACAGGTC 59.866 52.381 0.00 0.00 0.00 3.85
6261 20899 4.785453 TGCCGGTGTGTGTGTGCA 62.785 61.111 1.90 0.00 0.00 4.57
6262 20900 4.250431 GCCGGTGTGTGTGTGCAC 62.250 66.667 10.75 10.75 45.44 4.57
6276 20914 2.431683 GCACAGGCAGGGAGTGAA 59.568 61.111 0.00 0.00 40.72 3.18
6277 20915 1.673665 GCACAGGCAGGGAGTGAAG 60.674 63.158 0.00 0.00 40.72 3.02
6286 20924 2.158696 GCAGGGAGTGAAGATAAGCCAT 60.159 50.000 0.00 0.00 0.00 4.40
6372 21010 2.823924 TTTAGGCTCGCACACAAGTA 57.176 45.000 0.00 0.00 0.00 2.24
6456 21094 8.372521 CACAACTAAATTTGATAAATTGCGGAC 58.627 33.333 0.00 0.00 40.05 4.79
6479 21117 7.288810 ACAAATAGTTGTGGTTGTCATGATT 57.711 32.000 7.92 0.00 46.40 2.57
6615 21254 3.370978 TCAATTCGCTTCAGGTCGATTTC 59.629 43.478 0.00 0.00 34.48 2.17
6646 21285 0.924090 GATCCGACACGAATCACAGC 59.076 55.000 0.00 0.00 0.00 4.40
6718 21357 2.514458 ATTCTTGGGCTTCATTCGGT 57.486 45.000 0.00 0.00 0.00 4.69
6747 21386 9.017509 TGAGCTCTTCAGTTCAATTATCAATTT 57.982 29.630 16.19 0.00 36.96 1.82
6833 21472 9.566432 AGTCATATTCAGTTTCTCTTTGTTCTT 57.434 29.630 0.00 0.00 0.00 2.52
6874 21513 3.251004 GCCTTCAGTTTTGTGTAGGTCTG 59.749 47.826 0.00 0.00 0.00 3.51
6945 21584 5.009631 CCTCATTTTGTCCTATGGTGTTCA 58.990 41.667 0.00 0.00 0.00 3.18
6963 21602 7.550551 TGGTGTTCAGTCTTTCATTCTATCATC 59.449 37.037 0.00 0.00 0.00 2.92
7011 21650 7.147897 CCTTTAGTTTCAGGGTTCTCTGTTTTT 60.148 37.037 0.00 0.00 36.25 1.94
7019 21658 4.399303 AGGGTTCTCTGTTTTTCACTGTTG 59.601 41.667 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.043816 TGATCTGTAGCTGGCTAGGC 58.956 55.000 9.85 9.85 0.00 3.93
14 15 1.405463 CACGTGATCTGTAGCTGGCTA 59.595 52.381 10.90 0.00 0.00 3.93
20 21 0.721718 GTTGGCACGTGATCTGTAGC 59.278 55.000 22.23 0.00 0.00 3.58
89 90 4.804420 TCTCGGCAGCCCATCCCT 62.804 66.667 5.63 0.00 0.00 4.20
117 118 0.950555 TCTACGACCACTGCGTACGT 60.951 55.000 17.90 0.00 42.62 3.57
124 125 0.170561 CGTTCCCTCTACGACCACTG 59.829 60.000 0.00 0.00 41.33 3.66
136 3722 1.508632 CGTTTGTGATGACGTTCCCT 58.491 50.000 0.00 0.00 34.75 4.20
149 3735 2.395360 ACTGCGCACACACGTTTGT 61.395 52.632 5.66 0.44 35.84 2.83
181 3768 2.180204 GGTGGAATGTCATCGGGCG 61.180 63.158 0.00 0.00 0.00 6.13
204 3791 6.101997 CCAATTGTTTTGATTCCTCCTAAGC 58.898 40.000 4.43 0.00 0.00 3.09
205 3792 7.232118 ACCAATTGTTTTGATTCCTCCTAAG 57.768 36.000 4.43 0.00 0.00 2.18
206 3793 7.441017 CAACCAATTGTTTTGATTCCTCCTAA 58.559 34.615 4.43 0.00 34.00 2.69
207 3794 6.518200 GCAACCAATTGTTTTGATTCCTCCTA 60.518 38.462 17.17 0.00 38.17 2.94
208 3795 5.742838 GCAACCAATTGTTTTGATTCCTCCT 60.743 40.000 17.17 0.00 38.17 3.69
210 3797 5.299949 AGCAACCAATTGTTTTGATTCCTC 58.700 37.500 17.17 3.03 38.17 3.71
219 3809 4.260170 TGCAAAAGAGCAACCAATTGTTT 58.740 34.783 4.43 0.00 42.46 2.83
254 3844 1.063649 CATCAGCATCTTGCCACGC 59.936 57.895 0.00 0.00 46.52 5.34
256 3846 0.454600 CCACATCAGCATCTTGCCAC 59.545 55.000 0.00 0.00 46.52 5.01
258 3848 0.737219 GTCCACATCAGCATCTTGCC 59.263 55.000 0.00 0.00 46.52 4.52
262 3852 3.014623 CACATTGTCCACATCAGCATCT 58.985 45.455 0.00 0.00 0.00 2.90
264 3854 1.475280 GCACATTGTCCACATCAGCAT 59.525 47.619 0.00 0.00 0.00 3.79
279 3869 4.084287 ACCAATTCTCTCAACATGCACAT 58.916 39.130 0.00 0.00 0.00 3.21
292 3882 4.654262 TGATCCCCACTACTACCAATTCTC 59.346 45.833 0.00 0.00 0.00 2.87
294 3884 5.367945 TTGATCCCCACTACTACCAATTC 57.632 43.478 0.00 0.00 0.00 2.17
300 3890 8.483758 TCTTAAGAAATTGATCCCCACTACTAC 58.516 37.037 1.68 0.00 0.00 2.73
302 3892 7.510675 TCTTAAGAAATTGATCCCCACTACT 57.489 36.000 1.68 0.00 0.00 2.57
317 3907 8.522830 CCCTGCAAATCTTACATTCTTAAGAAA 58.477 33.333 21.26 4.81 40.62 2.52
323 3913 4.082026 GTGCCCTGCAAATCTTACATTCTT 60.082 41.667 0.00 0.00 41.47 2.52
325 3915 3.731867 CGTGCCCTGCAAATCTTACATTC 60.732 47.826 0.00 0.00 41.47 2.67
329 3919 0.179163 GCGTGCCCTGCAAATCTTAC 60.179 55.000 0.00 0.00 41.47 2.34
337 3927 2.436469 CATGTAGCGTGCCCTGCA 60.436 61.111 0.00 0.00 35.60 4.41
338 3928 3.204827 CCATGTAGCGTGCCCTGC 61.205 66.667 0.00 0.00 0.00 4.85
339 3929 2.514592 CCCATGTAGCGTGCCCTG 60.515 66.667 0.00 0.00 0.00 4.45
340 3930 4.489771 GCCCATGTAGCGTGCCCT 62.490 66.667 0.00 0.00 0.00 5.19
347 3937 3.482232 ATGAGCCGGCCCATGTAGC 62.482 63.158 24.02 3.04 0.00 3.58
348 3938 1.302033 GATGAGCCGGCCCATGTAG 60.302 63.158 29.68 0.00 0.00 2.74
349 3939 0.471022 TAGATGAGCCGGCCCATGTA 60.471 55.000 29.68 25.31 0.00 2.29
350 3940 1.130054 ATAGATGAGCCGGCCCATGT 61.130 55.000 29.68 26.50 0.00 3.21
351 3941 0.675837 CATAGATGAGCCGGCCCATG 60.676 60.000 29.68 11.84 0.00 3.66
352 3942 1.681666 CATAGATGAGCCGGCCCAT 59.318 57.895 24.90 24.90 0.00 4.00
353 3943 2.519622 CCATAGATGAGCCGGCCCA 61.520 63.158 26.15 20.75 0.00 5.36
354 3944 2.348998 CCATAGATGAGCCGGCCC 59.651 66.667 26.15 13.59 0.00 5.80
355 3945 2.359230 GCCATAGATGAGCCGGCC 60.359 66.667 26.15 15.80 36.73 6.13
356 3946 0.536006 AAAGCCATAGATGAGCCGGC 60.536 55.000 21.89 21.89 43.31 6.13
357 3947 1.071385 AGAAAGCCATAGATGAGCCGG 59.929 52.381 0.00 0.00 0.00 6.13
358 3948 2.540265 AGAAAGCCATAGATGAGCCG 57.460 50.000 0.00 0.00 0.00 5.52
359 3949 4.084011 AGAAGAAAGCCATAGATGAGCC 57.916 45.455 0.00 0.00 0.00 4.70
360 3950 5.121811 TGAAGAAGAAAGCCATAGATGAGC 58.878 41.667 0.00 0.00 0.00 4.26
361 3951 7.804843 AATGAAGAAGAAAGCCATAGATGAG 57.195 36.000 0.00 0.00 0.00 2.90
362 3952 8.051535 AGAAATGAAGAAGAAAGCCATAGATGA 58.948 33.333 0.00 0.00 0.00 2.92
363 3953 8.223177 AGAAATGAAGAAGAAAGCCATAGATG 57.777 34.615 0.00 0.00 0.00 2.90
364 3954 8.820153 AAGAAATGAAGAAGAAAGCCATAGAT 57.180 30.769 0.00 0.00 0.00 1.98
365 3955 8.641498 AAAGAAATGAAGAAGAAAGCCATAGA 57.359 30.769 0.00 0.00 0.00 1.98
366 3956 8.738106 AGAAAGAAATGAAGAAGAAAGCCATAG 58.262 33.333 0.00 0.00 0.00 2.23
367 3957 8.641498 AGAAAGAAATGAAGAAGAAAGCCATA 57.359 30.769 0.00 0.00 0.00 2.74
368 3958 7.309683 GGAGAAAGAAATGAAGAAGAAAGCCAT 60.310 37.037 0.00 0.00 0.00 4.40
369 3959 6.015940 GGAGAAAGAAATGAAGAAGAAAGCCA 60.016 38.462 0.00 0.00 0.00 4.75
370 3960 6.385843 GGAGAAAGAAATGAAGAAGAAAGCC 58.614 40.000 0.00 0.00 0.00 4.35
371 3961 6.082984 CGGAGAAAGAAATGAAGAAGAAAGC 58.917 40.000 0.00 0.00 0.00 3.51
372 3962 6.205658 ACCGGAGAAAGAAATGAAGAAGAAAG 59.794 38.462 9.46 0.00 0.00 2.62
373 3963 6.062095 ACCGGAGAAAGAAATGAAGAAGAAA 58.938 36.000 9.46 0.00 0.00 2.52
374 3964 5.621193 ACCGGAGAAAGAAATGAAGAAGAA 58.379 37.500 9.46 0.00 0.00 2.52
375 3965 5.228945 ACCGGAGAAAGAAATGAAGAAGA 57.771 39.130 9.46 0.00 0.00 2.87
376 3966 5.948992 AACCGGAGAAAGAAATGAAGAAG 57.051 39.130 9.46 0.00 0.00 2.85
377 3967 5.592688 ACAAACCGGAGAAAGAAATGAAGAA 59.407 36.000 9.46 0.00 0.00 2.52
378 3968 5.130350 ACAAACCGGAGAAAGAAATGAAGA 58.870 37.500 9.46 0.00 0.00 2.87
379 3969 5.438761 ACAAACCGGAGAAAGAAATGAAG 57.561 39.130 9.46 0.00 0.00 3.02
380 3970 5.845391 AACAAACCGGAGAAAGAAATGAA 57.155 34.783 9.46 0.00 0.00 2.57
381 3971 6.292923 TCTAACAAACCGGAGAAAGAAATGA 58.707 36.000 9.46 0.00 0.00 2.57
382 3972 6.348540 CCTCTAACAAACCGGAGAAAGAAATG 60.349 42.308 9.46 0.00 0.00 2.32
383 3973 5.705905 CCTCTAACAAACCGGAGAAAGAAAT 59.294 40.000 9.46 0.00 0.00 2.17
384 3974 5.061179 CCTCTAACAAACCGGAGAAAGAAA 58.939 41.667 9.46 0.00 0.00 2.52
385 3975 4.638304 CCTCTAACAAACCGGAGAAAGAA 58.362 43.478 9.46 0.00 0.00 2.52
386 3976 3.556423 GCCTCTAACAAACCGGAGAAAGA 60.556 47.826 9.46 2.01 0.00 2.52
387 3977 2.742589 GCCTCTAACAAACCGGAGAAAG 59.257 50.000 9.46 0.00 0.00 2.62
388 3978 2.370849 AGCCTCTAACAAACCGGAGAAA 59.629 45.455 9.46 0.00 0.00 2.52
389 3979 1.975680 AGCCTCTAACAAACCGGAGAA 59.024 47.619 9.46 0.00 0.00 2.87
390 3980 1.640917 AGCCTCTAACAAACCGGAGA 58.359 50.000 9.46 0.00 0.00 3.71
391 3981 2.474410 AAGCCTCTAACAAACCGGAG 57.526 50.000 9.46 0.00 0.00 4.63
392 3982 2.882137 CAAAAGCCTCTAACAAACCGGA 59.118 45.455 9.46 0.00 0.00 5.14
393 3983 2.621526 ACAAAAGCCTCTAACAAACCGG 59.378 45.455 0.00 0.00 0.00 5.28
394 3984 3.550030 CCACAAAAGCCTCTAACAAACCG 60.550 47.826 0.00 0.00 0.00 4.44
395 3985 3.383505 ACCACAAAAGCCTCTAACAAACC 59.616 43.478 0.00 0.00 0.00 3.27
396 3986 4.649088 ACCACAAAAGCCTCTAACAAAC 57.351 40.909 0.00 0.00 0.00 2.93
397 3987 5.394773 GGAAACCACAAAAGCCTCTAACAAA 60.395 40.000 0.00 0.00 0.00 2.83
398 3988 4.098807 GGAAACCACAAAAGCCTCTAACAA 59.901 41.667 0.00 0.00 0.00 2.83
399 3989 3.634910 GGAAACCACAAAAGCCTCTAACA 59.365 43.478 0.00 0.00 0.00 2.41
400 3990 3.634910 TGGAAACCACAAAAGCCTCTAAC 59.365 43.478 0.00 0.00 0.00 2.34
401 3991 3.904717 TGGAAACCACAAAAGCCTCTAA 58.095 40.909 0.00 0.00 0.00 2.10
402 3992 3.586470 TGGAAACCACAAAAGCCTCTA 57.414 42.857 0.00 0.00 0.00 2.43
403 3993 2.430694 GTTGGAAACCACAAAAGCCTCT 59.569 45.455 0.00 0.00 42.21 3.69
404 3994 2.821546 GTTGGAAACCACAAAAGCCTC 58.178 47.619 0.00 0.00 42.21 4.70
405 3995 2.979814 GTTGGAAACCACAAAAGCCT 57.020 45.000 0.00 0.00 42.21 4.58
417 4007 1.430992 AGAGGAAGACCGGTTGGAAA 58.569 50.000 9.42 0.00 41.83 3.13
418 4008 1.071699 CAAGAGGAAGACCGGTTGGAA 59.928 52.381 9.42 0.00 41.83 3.53
419 4009 0.685097 CAAGAGGAAGACCGGTTGGA 59.315 55.000 9.42 0.00 41.83 3.53
420 4010 0.396811 ACAAGAGGAAGACCGGTTGG 59.603 55.000 9.42 0.00 41.83 3.77
421 4011 1.344763 AGACAAGAGGAAGACCGGTTG 59.655 52.381 9.42 2.14 41.83 3.77
422 4012 1.619332 GAGACAAGAGGAAGACCGGTT 59.381 52.381 9.42 0.00 41.83 4.44
423 4013 1.203075 AGAGACAAGAGGAAGACCGGT 60.203 52.381 6.92 6.92 41.83 5.28
424 4014 1.551452 AGAGACAAGAGGAAGACCGG 58.449 55.000 0.00 0.00 41.83 5.28
425 4015 3.669251 AAAGAGACAAGAGGAAGACCG 57.331 47.619 0.00 0.00 41.83 4.79
426 4016 4.041075 AGGAAAAGAGACAAGAGGAAGACC 59.959 45.833 0.00 0.00 0.00 3.85
427 4017 4.994217 CAGGAAAAGAGACAAGAGGAAGAC 59.006 45.833 0.00 0.00 0.00 3.01
428 4018 4.503991 GCAGGAAAAGAGACAAGAGGAAGA 60.504 45.833 0.00 0.00 0.00 2.87
429 4019 3.750652 GCAGGAAAAGAGACAAGAGGAAG 59.249 47.826 0.00 0.00 0.00 3.46
430 4020 3.136443 TGCAGGAAAAGAGACAAGAGGAA 59.864 43.478 0.00 0.00 0.00 3.36
431 4021 2.705658 TGCAGGAAAAGAGACAAGAGGA 59.294 45.455 0.00 0.00 0.00 3.71
432 4022 3.072944 CTGCAGGAAAAGAGACAAGAGG 58.927 50.000 5.57 0.00 0.00 3.69
433 4023 3.072944 CCTGCAGGAAAAGAGACAAGAG 58.927 50.000 29.88 0.00 37.39 2.85
434 4024 2.705658 TCCTGCAGGAAAAGAGACAAGA 59.294 45.455 33.41 5.30 42.18 3.02
435 4025 3.131709 TCCTGCAGGAAAAGAGACAAG 57.868 47.619 33.41 1.90 42.18 3.16
447 4037 0.036010 ACCAGTCGAAATCCTGCAGG 60.036 55.000 27.87 27.87 0.00 4.85
448 4038 1.813513 AACCAGTCGAAATCCTGCAG 58.186 50.000 6.78 6.78 0.00 4.41
449 4039 2.270352 AAACCAGTCGAAATCCTGCA 57.730 45.000 0.00 0.00 0.00 4.41
450 4040 3.643159 AAAAACCAGTCGAAATCCTGC 57.357 42.857 0.00 0.00 0.00 4.85
451 4041 9.855021 ATAAAATAAAAACCAGTCGAAATCCTG 57.145 29.630 0.00 0.00 0.00 3.86
543 4133 9.672673 TGTCCATAAATTTTTCAAACTTGGAAA 57.327 25.926 0.00 0.00 33.97 3.13
544 4134 9.844257 ATGTCCATAAATTTTTCAAACTTGGAA 57.156 25.926 0.00 0.00 0.00 3.53
545 4135 9.844257 AATGTCCATAAATTTTTCAAACTTGGA 57.156 25.926 0.00 0.00 0.00 3.53
563 4153 9.962809 AAATCATGGATTTAACAAAATGTCCAT 57.037 25.926 2.53 0.00 40.00 3.41
564 4154 9.790344 AAAATCATGGATTTAACAAAATGTCCA 57.210 25.926 4.77 0.00 40.77 4.02
724 4314 9.643652 GCGATTAAATGTTCACAATTTTGAAAA 57.356 25.926 8.56 4.18 37.24 2.29
725 4315 8.820933 TGCGATTAAATGTTCACAATTTTGAAA 58.179 25.926 8.56 1.16 37.24 2.69
726 4316 8.357796 TGCGATTAAATGTTCACAATTTTGAA 57.642 26.923 2.88 2.88 32.94 2.69
727 4317 7.936950 TGCGATTAAATGTTCACAATTTTGA 57.063 28.000 0.00 0.00 0.00 2.69
728 4318 8.060679 TGTTGCGATTAAATGTTCACAATTTTG 58.939 29.630 0.00 0.00 0.00 2.44
729 4319 8.136057 TGTTGCGATTAAATGTTCACAATTTT 57.864 26.923 0.00 0.00 0.00 1.82
730 4320 7.706281 TGTTGCGATTAAATGTTCACAATTT 57.294 28.000 0.00 0.00 0.00 1.82
731 4321 7.887996 ATGTTGCGATTAAATGTTCACAATT 57.112 28.000 0.00 0.00 0.00 2.32
756 4346 9.883142 TGCCCGATTTTTGAATTTCTTAAATAT 57.117 25.926 0.00 0.00 0.00 1.28
757 4347 9.883142 ATGCCCGATTTTTGAATTTCTTAAATA 57.117 25.926 0.00 0.00 0.00 1.40
758 4348 8.667463 CATGCCCGATTTTTGAATTTCTTAAAT 58.333 29.630 0.00 4.01 0.00 1.40
759 4349 7.875041 TCATGCCCGATTTTTGAATTTCTTAAA 59.125 29.630 0.00 0.00 0.00 1.52
760 4350 7.382110 TCATGCCCGATTTTTGAATTTCTTAA 58.618 30.769 0.00 0.00 0.00 1.85
761 4351 6.929625 TCATGCCCGATTTTTGAATTTCTTA 58.070 32.000 0.00 0.00 0.00 2.10
762 4352 5.792741 TCATGCCCGATTTTTGAATTTCTT 58.207 33.333 0.00 0.00 0.00 2.52
763 4353 5.404466 TCATGCCCGATTTTTGAATTTCT 57.596 34.783 0.00 0.00 0.00 2.52
764 4354 5.163864 GGTTCATGCCCGATTTTTGAATTTC 60.164 40.000 0.00 0.00 0.00 2.17
765 4355 4.694982 GGTTCATGCCCGATTTTTGAATTT 59.305 37.500 0.00 0.00 0.00 1.82
766 4356 4.020307 AGGTTCATGCCCGATTTTTGAATT 60.020 37.500 0.00 0.00 0.00 2.17
767 4357 3.515104 AGGTTCATGCCCGATTTTTGAAT 59.485 39.130 0.00 0.00 0.00 2.57
768 4358 2.896685 AGGTTCATGCCCGATTTTTGAA 59.103 40.909 0.00 0.00 0.00 2.69
769 4359 2.524306 AGGTTCATGCCCGATTTTTGA 58.476 42.857 0.00 0.00 0.00 2.69
770 4360 3.317603 AAGGTTCATGCCCGATTTTTG 57.682 42.857 0.00 0.00 0.00 2.44
771 4361 4.350368 AAAAGGTTCATGCCCGATTTTT 57.650 36.364 0.00 0.00 0.00 1.94
772 4362 4.350368 AAAAAGGTTCATGCCCGATTTT 57.650 36.364 11.41 11.41 0.00 1.82
792 4382 6.696411 CCAATAGGTTCATGTTGCCTAAAAA 58.304 36.000 13.56 0.00 38.25 1.94
793 4383 6.279513 CCAATAGGTTCATGTTGCCTAAAA 57.720 37.500 13.56 0.00 38.25 1.52
794 4384 5.913137 CCAATAGGTTCATGTTGCCTAAA 57.087 39.130 13.56 0.00 38.25 1.85
809 4399 2.764314 GGCTGTGCGCACCAATAGG 61.764 63.158 35.72 19.10 41.67 2.57
810 4400 2.793946 GGCTGTGCGCACCAATAG 59.206 61.111 35.72 26.49 41.67 1.73
811 4401 3.124270 CGGCTGTGCGCACCAATA 61.124 61.111 35.72 17.72 41.67 1.90
816 4406 3.959975 TTTTCCGGCTGTGCGCAC 61.960 61.111 33.11 33.11 41.67 5.34
817 4407 3.959975 GTTTTCCGGCTGTGCGCA 61.960 61.111 5.66 5.66 41.67 6.09
818 4408 4.700365 GGTTTTCCGGCTGTGCGC 62.700 66.667 0.00 0.00 38.13 6.09
819 4409 3.254014 CTGGTTTTCCGGCTGTGCG 62.254 63.158 0.00 0.00 44.36 5.34
820 4410 1.896660 TCTGGTTTTCCGGCTGTGC 60.897 57.895 0.00 0.00 45.57 4.57
821 4411 0.817634 TGTCTGGTTTTCCGGCTGTG 60.818 55.000 0.00 0.00 45.57 3.66
822 4412 0.818040 GTGTCTGGTTTTCCGGCTGT 60.818 55.000 0.00 0.00 45.57 4.40
823 4413 1.841663 CGTGTCTGGTTTTCCGGCTG 61.842 60.000 0.00 0.00 45.57 4.85
824 4414 1.597027 CGTGTCTGGTTTTCCGGCT 60.597 57.895 0.00 0.00 45.57 5.52
825 4415 1.161563 TTCGTGTCTGGTTTTCCGGC 61.162 55.000 0.00 0.00 45.57 6.13
827 4417 0.234884 GCTTCGTGTCTGGTTTTCCG 59.765 55.000 0.00 0.00 44.36 4.30
828 4418 0.234884 CGCTTCGTGTCTGGTTTTCC 59.765 55.000 0.00 0.00 41.14 3.13
829 4419 1.070776 GTCGCTTCGTGTCTGGTTTTC 60.071 52.381 0.00 0.00 0.00 2.29
830 4420 0.935196 GTCGCTTCGTGTCTGGTTTT 59.065 50.000 0.00 0.00 0.00 2.43
831 4421 0.179094 TGTCGCTTCGTGTCTGGTTT 60.179 50.000 0.00 0.00 0.00 3.27
832 4422 0.179094 TTGTCGCTTCGTGTCTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
833 4423 0.033504 ATTGTCGCTTCGTGTCTGGT 59.966 50.000 0.00 0.00 0.00 4.00
834 4424 0.439985 CATTGTCGCTTCGTGTCTGG 59.560 55.000 0.00 0.00 0.00 3.86
835 4425 0.439985 CCATTGTCGCTTCGTGTCTG 59.560 55.000 0.00 0.00 0.00 3.51
836 4426 0.670546 CCCATTGTCGCTTCGTGTCT 60.671 55.000 0.00 0.00 0.00 3.41
837 4427 1.787847 CCCATTGTCGCTTCGTGTC 59.212 57.895 0.00 0.00 0.00 3.67
838 4428 2.325082 GCCCATTGTCGCTTCGTGT 61.325 57.895 0.00 0.00 0.00 4.49
839 4429 2.480555 GCCCATTGTCGCTTCGTG 59.519 61.111 0.00 0.00 0.00 4.35
840 4430 2.746277 GGCCCATTGTCGCTTCGT 60.746 61.111 0.00 0.00 0.00 3.85
841 4431 2.745884 TGGCCCATTGTCGCTTCG 60.746 61.111 0.00 0.00 0.00 3.79
842 4432 3.056313 GCTGGCCCATTGTCGCTTC 62.056 63.158 0.00 0.00 0.00 3.86
843 4433 3.064324 GCTGGCCCATTGTCGCTT 61.064 61.111 0.00 0.00 0.00 4.68
854 4444 3.357079 CGCGATTATGGGCTGGCC 61.357 66.667 14.23 14.23 0.00 5.36
855 4445 2.591715 ACGCGATTATGGGCTGGC 60.592 61.111 15.93 0.00 0.00 4.85
856 4446 2.253758 CCACGCGATTATGGGCTGG 61.254 63.158 15.93 1.82 31.83 4.85
857 4447 0.813610 TTCCACGCGATTATGGGCTG 60.814 55.000 15.93 0.00 36.56 4.85
858 4448 0.814010 GTTCCACGCGATTATGGGCT 60.814 55.000 15.93 0.00 36.56 5.19
859 4449 1.092921 TGTTCCACGCGATTATGGGC 61.093 55.000 15.93 7.51 36.56 5.36
860 4450 0.655733 GTGTTCCACGCGATTATGGG 59.344 55.000 15.93 4.14 36.56 4.00
861 4451 1.651987 AGTGTTCCACGCGATTATGG 58.348 50.000 15.93 10.71 39.64 2.74
862 4452 3.183754 TGTAGTGTTCCACGCGATTATG 58.816 45.455 15.93 0.00 39.64 1.90
863 4453 3.444916 CTGTAGTGTTCCACGCGATTAT 58.555 45.455 15.93 0.00 39.64 1.28
864 4454 2.416296 CCTGTAGTGTTCCACGCGATTA 60.416 50.000 15.93 0.00 39.64 1.75
865 4455 1.671850 CCTGTAGTGTTCCACGCGATT 60.672 52.381 15.93 0.00 39.64 3.34
866 4456 0.108804 CCTGTAGTGTTCCACGCGAT 60.109 55.000 15.93 0.00 39.64 4.58
867 4457 1.174078 TCCTGTAGTGTTCCACGCGA 61.174 55.000 15.93 0.00 39.64 5.87
868 4458 0.732880 CTCCTGTAGTGTTCCACGCG 60.733 60.000 3.53 3.53 39.64 6.01
869 4459 0.317479 ACTCCTGTAGTGTTCCACGC 59.683 55.000 0.00 0.00 39.64 5.34
870 4460 2.094854 GGTACTCCTGTAGTGTTCCACG 60.095 54.545 0.00 0.00 39.39 4.94
871 4461 2.233186 GGGTACTCCTGTAGTGTTCCAC 59.767 54.545 0.00 0.00 39.39 4.02
872 4462 2.532843 GGGTACTCCTGTAGTGTTCCA 58.467 52.381 0.00 0.00 39.39 3.53
873 4463 1.829849 GGGGTACTCCTGTAGTGTTCC 59.170 57.143 3.84 0.00 39.39 3.62
874 4464 2.496470 CAGGGGTACTCCTGTAGTGTTC 59.504 54.545 30.77 0.00 46.89 3.18
875 4465 2.537143 CAGGGGTACTCCTGTAGTGTT 58.463 52.381 30.77 0.00 46.89 3.32
876 4466 2.233305 CAGGGGTACTCCTGTAGTGT 57.767 55.000 30.77 0.00 46.89 3.55
883 4473 1.625508 GGGATTGACAGGGGTACTCCT 60.626 57.143 9.09 9.09 37.71 3.69
884 4474 0.837940 GGGATTGACAGGGGTACTCC 59.162 60.000 2.47 2.47 0.00 3.85
885 4475 1.486726 CAGGGATTGACAGGGGTACTC 59.513 57.143 0.00 0.00 0.00 2.59
886 4476 1.584724 CAGGGATTGACAGGGGTACT 58.415 55.000 0.00 0.00 0.00 2.73
887 4477 0.107165 GCAGGGATTGACAGGGGTAC 60.107 60.000 0.00 0.00 0.00 3.34
888 4478 1.279025 GGCAGGGATTGACAGGGGTA 61.279 60.000 0.00 0.00 33.76 3.69
889 4479 2.616458 GGCAGGGATTGACAGGGGT 61.616 63.158 0.00 0.00 33.76 4.95
890 4480 2.276740 GGCAGGGATTGACAGGGG 59.723 66.667 0.00 0.00 33.76 4.79
891 4481 2.124570 CGGCAGGGATTGACAGGG 60.125 66.667 0.00 0.00 32.77 4.45
892 4482 1.971505 TAGCGGCAGGGATTGACAGG 61.972 60.000 1.45 0.00 32.77 4.00
893 4483 0.811616 GTAGCGGCAGGGATTGACAG 60.812 60.000 1.45 0.00 32.77 3.51
894 4484 1.220749 GTAGCGGCAGGGATTGACA 59.779 57.895 1.45 0.00 32.77 3.58
895 4485 1.523938 GGTAGCGGCAGGGATTGAC 60.524 63.158 1.45 0.00 0.00 3.18
896 4486 1.271840 AAGGTAGCGGCAGGGATTGA 61.272 55.000 1.45 0.00 0.00 2.57
897 4487 0.815615 GAAGGTAGCGGCAGGGATTG 60.816 60.000 1.45 0.00 0.00 2.67
898 4488 1.527370 GAAGGTAGCGGCAGGGATT 59.473 57.895 1.45 0.00 0.00 3.01
899 4489 2.797278 CGAAGGTAGCGGCAGGGAT 61.797 63.158 1.45 0.00 0.00 3.85
900 4490 3.458163 CGAAGGTAGCGGCAGGGA 61.458 66.667 1.45 0.00 0.00 4.20
902 4492 2.292794 TTAGCGAAGGTAGCGGCAGG 62.293 60.000 1.45 0.00 43.18 4.85
903 4493 0.459585 TTTAGCGAAGGTAGCGGCAG 60.460 55.000 1.45 0.00 43.18 4.85
904 4494 0.037139 TTTTAGCGAAGGTAGCGGCA 60.037 50.000 1.45 0.00 43.18 5.69
905 4495 1.081094 TTTTTAGCGAAGGTAGCGGC 58.919 50.000 0.00 0.00 43.18 6.53
929 4519 1.751437 GAGTAGCGGCAGGGATTTTT 58.249 50.000 1.45 0.00 0.00 1.94
930 4520 0.462047 CGAGTAGCGGCAGGGATTTT 60.462 55.000 1.45 0.00 36.03 1.82
931 4521 1.144057 CGAGTAGCGGCAGGGATTT 59.856 57.895 1.45 0.00 36.03 2.17
932 4522 2.815308 CGAGTAGCGGCAGGGATT 59.185 61.111 1.45 0.00 36.03 3.01
1076 4672 0.957888 GTGCTTCTCCTTCCTGTGCC 60.958 60.000 0.00 0.00 0.00 5.01
1176 4796 0.801251 CAGCCTCAGCCTTTTTCTCG 59.199 55.000 0.00 0.00 41.25 4.04
1182 4802 1.682257 GGTCTCAGCCTCAGCCTTT 59.318 57.895 0.00 0.00 41.25 3.11
1212 4852 4.415332 TCGTCTCCGCGCTTCACC 62.415 66.667 5.56 0.00 0.00 4.02
1213 4853 2.876645 CTCGTCTCCGCGCTTCAC 60.877 66.667 5.56 0.00 0.00 3.18
1214 4854 3.040414 CTCTCGTCTCCGCGCTTCA 62.040 63.158 5.56 0.00 0.00 3.02
1215 4855 2.277628 CTCTCGTCTCCGCGCTTC 60.278 66.667 5.56 0.00 0.00 3.86
1216 4856 3.816524 CCTCTCGTCTCCGCGCTT 61.817 66.667 5.56 0.00 0.00 4.68
1217 4857 4.779966 TCCTCTCGTCTCCGCGCT 62.780 66.667 5.56 0.00 0.00 5.92
1218 4858 3.587933 ATCCTCTCGTCTCCGCGC 61.588 66.667 0.00 0.00 0.00 6.86
1219 4859 2.111932 CTCATCCTCTCGTCTCCGCG 62.112 65.000 0.00 0.00 0.00 6.46
1220 4860 1.652012 CTCATCCTCTCGTCTCCGC 59.348 63.158 0.00 0.00 0.00 5.54
1221 4861 1.791103 GCCTCATCCTCTCGTCTCCG 61.791 65.000 0.00 0.00 0.00 4.63
1291 4931 3.038417 CTTCCGCGGCATCGATCC 61.038 66.667 23.51 0.00 39.00 3.36
1321 4961 3.865745 CGTTCTTGTAGCCATGTTAGAGG 59.134 47.826 0.00 0.00 0.00 3.69
1326 4966 4.156008 GGAAATCGTTCTTGTAGCCATGTT 59.844 41.667 0.00 0.00 33.92 2.71
1327 4967 3.689649 GGAAATCGTTCTTGTAGCCATGT 59.310 43.478 0.00 0.00 33.92 3.21
1328 4968 3.689161 TGGAAATCGTTCTTGTAGCCATG 59.311 43.478 0.00 0.00 33.92 3.66
1329 4969 3.950397 TGGAAATCGTTCTTGTAGCCAT 58.050 40.909 0.00 0.00 33.92 4.40
1331 4971 3.751698 AGTTGGAAATCGTTCTTGTAGCC 59.248 43.478 0.00 0.00 33.92 3.93
1343 7544 7.913674 AGATCAAGAGTTGTAGTTGGAAATC 57.086 36.000 0.00 0.00 0.00 2.17
1386 7588 4.141287 ACTAACATGCAGTAAGTTGCCAA 58.859 39.130 0.00 0.00 43.43 4.52
1388 7590 4.766404 AACTAACATGCAGTAAGTTGCC 57.234 40.909 0.00 0.00 43.43 4.52
1889 8129 7.567622 ACAGCCCCTAGATGTTTTATAAGTCTA 59.432 37.037 0.00 0.00 0.00 2.59
1903 8145 1.417890 CGATCCAAACAGCCCCTAGAT 59.582 52.381 0.00 0.00 0.00 1.98
2050 12132 3.512724 CGACTTTAGTTCCACCCTAAGGA 59.487 47.826 0.00 0.00 36.73 3.36
2072 12154 5.990996 TGATGGGATTGCTTTCAAAGTTTTC 59.009 36.000 0.00 0.00 35.56 2.29
2421 12692 4.370364 TCATCATCGTCATCGTCTTCAA 57.630 40.909 0.00 0.00 38.33 2.69
2435 12790 4.761235 ATTCGCCATCAACATCATCATC 57.239 40.909 0.00 0.00 0.00 2.92
2775 15466 5.752472 TGGCAAACAGTAACATTTTCATGTG 59.248 36.000 0.00 0.00 43.34 3.21
2776 15467 5.911752 TGGCAAACAGTAACATTTTCATGT 58.088 33.333 0.00 0.00 46.34 3.21
2887 16075 7.665974 TCAAGAACTCAGTACTATCAAGAGTCA 59.334 37.037 11.90 0.00 38.51 3.41
2898 16086 3.808174 GCCGTTTTCAAGAACTCAGTACT 59.192 43.478 0.00 0.00 0.00 2.73
2934 16122 5.233050 CCATAGAGTCACGAATAAACTGCAG 59.767 44.000 13.48 13.48 0.00 4.41
3244 16772 0.667993 TTGCAAAGCGGGAGTTTCAG 59.332 50.000 0.00 0.00 31.00 3.02
3284 16812 3.565764 TCTGGTTCATCATCATCCCAC 57.434 47.619 0.00 0.00 0.00 4.61
3328 16859 1.558756 AGCTGACCTGATCCTCTTTGG 59.441 52.381 0.00 0.00 37.10 3.28
3438 16970 0.179111 CGATGAAGCGCCTTGTAGGA 60.179 55.000 2.29 0.00 37.67 2.94
3541 17089 0.610174 AAATCAGCAGCTCGGTCTGA 59.390 50.000 8.65 6.88 40.62 3.27
3542 17090 0.725686 CAAATCAGCAGCTCGGTCTG 59.274 55.000 0.00 1.27 37.15 3.51
3545 17093 0.250467 ACACAAATCAGCAGCTCGGT 60.250 50.000 0.00 0.00 0.00 4.69
3595 17143 1.274728 GCAAGAGAGAGCTTGTCCAGA 59.725 52.381 0.00 0.00 45.41 3.86
3649 17197 0.179073 CATCAACCTGCCTAGACGGG 60.179 60.000 1.69 1.69 42.28 5.28
3652 17200 3.059352 ACAACATCAACCTGCCTAGAC 57.941 47.619 0.00 0.00 0.00 2.59
3681 17301 0.548926 TATTCTCCACTGGGCCACCA 60.549 55.000 0.00 0.00 46.94 4.17
3682 17302 0.181350 CTATTCTCCACTGGGCCACC 59.819 60.000 0.00 0.00 37.24 4.61
3683 17303 0.181350 CCTATTCTCCACTGGGCCAC 59.819 60.000 0.00 0.00 0.00 5.01
3684 17304 0.988145 CCCTATTCTCCACTGGGCCA 60.988 60.000 5.85 5.85 0.00 5.36
3685 17305 1.709994 CCCCTATTCTCCACTGGGCC 61.710 65.000 0.00 0.00 36.66 5.80
3686 17306 1.839894 CCCCTATTCTCCACTGGGC 59.160 63.158 0.00 0.00 36.66 5.36
3687 17307 1.839894 GCCCCTATTCTCCACTGGG 59.160 63.158 0.00 0.00 37.68 4.45
3688 17308 1.048724 TCGCCCCTATTCTCCACTGG 61.049 60.000 0.00 0.00 0.00 4.00
3705 17325 5.062809 GGAGAAACAAGCATAGAACTCTTCG 59.937 44.000 0.00 0.00 34.02 3.79
3817 17437 2.076863 ACATAGTTGTTGAAGCTCGGC 58.923 47.619 0.00 0.00 29.55 5.54
3890 17510 2.832201 GTCCCTCTACCGGGGTCG 60.832 72.222 6.32 0.00 44.78 4.79
3969 17600 2.022195 GCATCAACATCATCAGCCACT 58.978 47.619 0.00 0.00 0.00 4.00
3987 17618 0.808125 GCACCAATGTATTGACCGCA 59.192 50.000 6.18 0.00 40.14 5.69
4012 17643 2.278330 GCTGGTTGGGCTCCAAAGG 61.278 63.158 8.06 3.89 45.73 3.11
4281 17921 3.176924 AGACAAGCCAGGAAGAGACTA 57.823 47.619 0.00 0.00 0.00 2.59
4290 17930 2.431954 ATCCATGAAGACAAGCCAGG 57.568 50.000 0.00 0.00 0.00 4.45
4321 17976 1.880819 TAACTCGGCCGAAGACCACC 61.881 60.000 30.53 0.00 0.00 4.61
4415 18071 3.424703 AGCCCATAAGCGCATAATCAAT 58.575 40.909 11.47 0.00 38.01 2.57
4421 18077 0.465278 TGCAAGCCCATAAGCGCATA 60.465 50.000 11.47 0.97 38.01 3.14
4435 18091 2.969990 ACTACTCACAGAGCATGCAAG 58.030 47.619 21.98 11.41 32.04 4.01
4456 18112 4.211125 TGATACAAACCAACCACATGTGT 58.789 39.130 23.79 9.81 0.00 3.72
4677 18688 7.663081 CCAGCTGTTCCAAGAACATACATATAT 59.337 37.037 13.81 0.00 0.00 0.86
4687 18698 2.262423 ACTCCAGCTGTTCCAAGAAC 57.738 50.000 13.81 0.47 0.00 3.01
4748 18759 3.512033 TTGTAACAACAGCAAACCCAC 57.488 42.857 0.00 0.00 0.00 4.61
4759 18770 4.157105 AGTTGACACTGGGTTTGTAACAAC 59.843 41.667 0.00 0.00 35.29 3.32
4773 18784 2.743183 GCTTGTCCTGACAGTTGACACT 60.743 50.000 12.45 0.00 42.94 3.55
4774 18785 1.599542 GCTTGTCCTGACAGTTGACAC 59.400 52.381 12.45 1.85 42.94 3.67
4792 18803 9.539825 CTCTATTATTCACTAGTGTTGAATGCT 57.460 33.333 21.99 9.13 34.55 3.79
4871 18887 5.782893 AAAACAGTAATTTGGCACAGCTA 57.217 34.783 0.00 0.00 42.39 3.32
4898 18914 7.653713 AGAACAAGTGTACAAAGAGTCTACATG 59.346 37.037 0.00 0.00 0.00 3.21
4899 18915 7.727181 AGAACAAGTGTACAAAGAGTCTACAT 58.273 34.615 0.00 0.00 0.00 2.29
5231 19792 0.183492 TGTTATCTCCATGCCCTGGC 59.817 55.000 0.00 0.00 45.52 4.85
5313 19874 0.321653 GGTGCGTCTCCCAGACAATT 60.322 55.000 4.60 0.00 45.30 2.32
5478 20048 3.680777 TTCCCTTTGGTCTTCACCTTT 57.319 42.857 0.00 0.00 44.17 3.11
5632 20234 1.071471 CCTCGACACAACCCTTGCT 59.929 57.895 0.00 0.00 0.00 3.91
5639 20241 2.287103 GGAAGTTTGTCCTCGACACAAC 59.713 50.000 4.94 3.57 42.60 3.32
5668 20270 6.893583 ACCTCAAGTCATCTGTGCTAATATT 58.106 36.000 0.00 0.00 0.00 1.28
5687 20289 0.249868 CAACGTGGCTGAGAACCTCA 60.250 55.000 0.00 0.00 38.25 3.86
5710 20312 5.498393 AGGATCCAATGCATACAGATGATC 58.502 41.667 15.82 5.68 34.73 2.92
5761 20363 0.759436 ATTCCTCCGCGTCCCACTAT 60.759 55.000 4.92 0.00 0.00 2.12
5820 20422 4.755191 AAACGAATCACGACGACATATG 57.245 40.909 0.00 0.00 45.77 1.78
5871 20473 2.457598 TCTATTCCACCTCGTCTGCTT 58.542 47.619 0.00 0.00 0.00 3.91
6100 20736 2.485814 GTCAGCAACCCTAAAGAGCTTG 59.514 50.000 0.00 0.00 32.35 4.01
6101 20737 2.373502 AGTCAGCAACCCTAAAGAGCTT 59.626 45.455 0.00 0.00 32.35 3.74
6104 20740 3.513515 AGAGAGTCAGCAACCCTAAAGAG 59.486 47.826 0.00 0.00 0.00 2.85
6108 20744 1.276421 GCAGAGAGTCAGCAACCCTAA 59.724 52.381 0.00 0.00 0.00 2.69
6162 20798 4.202264 ACATGGATAGATTCGGACCTGTTC 60.202 45.833 0.00 0.00 0.00 3.18
6170 20806 3.062763 GCACAGACATGGATAGATTCGG 58.937 50.000 0.00 0.00 0.00 4.30
6261 20899 2.254152 TATCTTCACTCCCTGCCTGT 57.746 50.000 0.00 0.00 0.00 4.00
6262 20900 2.744494 GCTTATCTTCACTCCCTGCCTG 60.744 54.545 0.00 0.00 0.00 4.85
6263 20901 1.488393 GCTTATCTTCACTCCCTGCCT 59.512 52.381 0.00 0.00 0.00 4.75
6264 20902 1.475930 GGCTTATCTTCACTCCCTGCC 60.476 57.143 0.00 0.00 0.00 4.85
6265 20903 1.210478 TGGCTTATCTTCACTCCCTGC 59.790 52.381 0.00 0.00 0.00 4.85
6267 20905 3.906846 CCTATGGCTTATCTTCACTCCCT 59.093 47.826 0.00 0.00 0.00 4.20
6268 20906 3.558109 GCCTATGGCTTATCTTCACTCCC 60.558 52.174 0.73 0.00 46.69 4.30
6269 20907 3.669536 GCCTATGGCTTATCTTCACTCC 58.330 50.000 0.73 0.00 46.69 3.85
6286 20924 5.453903 GCTCTATGGAGTTTTCAGATGCCTA 60.454 44.000 8.00 0.00 41.38 3.93
6396 21034 3.247006 ACATACGCCAGAGATTCGTTT 57.753 42.857 0.00 0.00 37.61 3.60
6449 21087 2.577700 ACCACAACTATTTGTCCGCAA 58.422 42.857 0.00 0.00 44.57 4.85
6456 21094 6.089820 GCAATCATGACAACCACAACTATTTG 59.910 38.462 0.00 0.00 38.83 2.32
6581 21220 5.469760 TGAAGCGAATTGAAAGACAGATCAA 59.530 36.000 0.00 0.00 39.66 2.57
6583 21222 5.447010 CCTGAAGCGAATTGAAAGACAGATC 60.447 44.000 0.00 0.00 0.00 2.75
6615 21254 1.471287 TGTCGGATCGGACAGTTACAG 59.529 52.381 26.87 0.00 41.76 2.74
6689 21328 1.282157 AGCCCAAGAATAAACGAGCCT 59.718 47.619 0.00 0.00 0.00 4.58
6694 21333 4.342772 CGAATGAAGCCCAAGAATAAACG 58.657 43.478 0.00 0.00 0.00 3.60
6718 21357 7.333323 TGATAATTGAACTGAAGAGCTCATGA 58.667 34.615 17.77 0.00 32.14 3.07
6747 21386 9.477484 GACTGAACTAAACTGAAGATTCACTAA 57.523 33.333 0.00 0.00 32.90 2.24
6821 21460 3.967326 TGGGAGACTGAAGAACAAAGAGA 59.033 43.478 0.00 0.00 0.00 3.10
6833 21472 2.356125 GGCAAGCTAATTGGGAGACTGA 60.356 50.000 0.00 0.00 39.47 3.41
6874 21513 6.317088 TGAATTTCTTCATTGATCGAAGCAC 58.683 36.000 0.00 0.00 39.80 4.40
6963 21602 6.628185 AGGCAAGCTAATGAAGAAAAGATTG 58.372 36.000 0.00 0.00 38.15 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.