AutoCloner

Multiple sequence alignment - TraesCS5D01G052700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G052700	chr5D	100.000	1896	0	0	612	2507	50622345	50620450	0.000000e+00	3502
1	TraesCS5D01G052700	chr5D	96.343	711	24	2	1711	2421	210873465	210872757	0.000000e+00	1168
2	TraesCS5D01G052700	chr5D	100.000	337	0	0	1	337	50622956	50622620	7.620000e-175	623
3	TraesCS5D01G052700	chr5D	83.473	357	37	6	1	337	210875605	210875251	1.870000e-81	313
4	TraesCS5D01G052700	chr2B	96.703	1092	34	1	629	1718	797476108	797475017	0.000000e+00	1816
5	TraesCS5D01G052700	chr2B	95.898	707	17	3	1711	2417	797467460	797466766	0.000000e+00	1134
6	TraesCS5D01G052700	chr2B	79.428	734	142	8	991	1718	25341821	25341091	6.190000e-141	510
7	TraesCS5D01G052700	chr2B	79.343	731	142	8	991	1715	457192987	457193714	2.880000e-139	505
8	TraesCS5D01G052700	chr2B	92.023	351	14	1	1	337	797476613	797476263	4.850000e-132	481
9	TraesCS5D01G052700	chr2D	97.493	718	14	4	1703	2418	77632295	77633010	0.000000e+00	1223
10	TraesCS5D01G052700	chr2D	95.545	651	28	1	1068	1718	77629415	77630064	0.000000e+00	1040
11	TraesCS5D01G052700	chr2D	97.831	461	10	0	612	1072	77604388	77604848	0.000000e+00	797
12	TraesCS5D01G052700	chr2D	91.714	350	16	1	1	337	77603893	77604242	8.120000e-130	473
13	TraesCS5D01G052700	chr1A	94.875	761	34	2	959	1718	534853854	534853098	0.000000e+00	1184
14	TraesCS5D01G052700	chr1A	95.184	706	31	3	1711	2416	534850892	534850190	0.000000e+00	1112
15	TraesCS5D01G052700	chr1A	87.153	288	36	1	618	904	534854141	534853854	2.400000e-85	326
16	TraesCS5D01G052700	chr1A	84.167	360	31	12	1	337	534854892	534854536	2.400000e-85	326
17	TraesCS5D01G052700	chr6B	95.904	708	26	3	1711	2418	87649157	87648453	0.000000e+00	1144
18	TraesCS5D01G052700	chr6B	97.150	421	12	0	612	1032	87650903	87650483	0.000000e+00	712
19	TraesCS5D01G052700	chr6B	88.889	351	25	1	1	337	87651579	87651229	1.070000e-113	420
20	TraesCS5D01G052700	chrUn	95.284	721	27	6	1703	2421	134504231	134504946	0.000000e+00	1136
21	TraesCS5D01G052700	chrUn	95.583	566	19	5	1703	2266	30595603	30596164	0.000000e+00	902
22	TraesCS5D01G052700	chrUn	95.230	566	21	5	1703	2266	30667391	30667952	0.000000e+00	891
23	TraesCS5D01G052700	chrUn	83.143	350	40	10	1	335	30666078	30666423	4.050000e-78	302
24	TraesCS5D01G052700	chrUn	82.857	350	40	13	1	335	30594278	30594622	1.890000e-76	296
25	TraesCS5D01G052700	chrUn	81.429	350	46	10	1	335	134502735	134503080	4.110000e-68	268
26	TraesCS5D01G052700	chr6D	95.105	715	26	5	1711	2421	985244	984535	0.000000e+00	1118
27	TraesCS5D01G052700	chr2A	97.533	608	13	1	612	1219	99153211	99152606	0.000000e+00	1038
28	TraesCS5D01G052700	chr2A	79.673	733	142	6	991	1718	728782498	728781768	2.860000e-144	521
29	TraesCS5D01G052700	chr2A	79.235	732	141	10	991	1715	748226287	748227014	1.340000e-137	499
30	TraesCS5D01G052700	chr2A	91.317	334	16	3	1	321	99153813	99153480	6.360000e-121	444
31	TraesCS5D01G052700	chr3B	85.687	524	57	8	1909	2424	592671084	592671597	1.020000e-148	536
32	TraesCS5D01G052700	chr7A	79.456	735	140	10	991	1718	660201502	660200772	6.190000e-141	510
33	TraesCS5D01G052700	chr7B	78.231	735	144	15	993	1718	44882554	44881827	8.170000e-125	457

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G052700	chr5D	50620450	50622956	2506	True	2062.500000	3502	100.00000	1	2507	2	chr5D.!!$R1	2506
1	TraesCS5D01G052700	chr5D	210872757	210875605	2848	True	740.500000	1168	89.90800	1	2421	2	chr5D.!!$R2	2420
2	TraesCS5D01G052700	chr2B	797475017	797476613	1596	True	1148.500000	1816	94.36300	1	1718	2	chr2B.!!$R3	1717
3	TraesCS5D01G052700	chr2B	797466766	797467460	694	True	1134.000000	1134	95.89800	1711	2417	1	chr2B.!!$R2	706
4	TraesCS5D01G052700	chr2B	25341091	25341821	730	True	510.000000	510	79.42800	991	1718	1	chr2B.!!$R1	727
5	TraesCS5D01G052700	chr2B	457192987	457193714	727	False	505.000000	505	79.34300	991	1715	1	chr2B.!!$F1	724
6	TraesCS5D01G052700	chr2D	77629415	77633010	3595	False	1131.500000	1223	96.51900	1068	2418	2	chr2D.!!$F2	1350
7	TraesCS5D01G052700	chr2D	77603893	77604848	955	False	635.000000	797	94.77250	1	1072	2	chr2D.!!$F1	1071
8	TraesCS5D01G052700	chr1A	534850190	534854892	4702	True	737.000000	1184	90.34475	1	2416	4	chr1A.!!$R1	2415
9	TraesCS5D01G052700	chr6B	87648453	87651579	3126	True	758.666667	1144	93.98100	1	2418	3	chr6B.!!$R1	2417
10	TraesCS5D01G052700	chrUn	134502735	134504946	2211	False	702.000000	1136	88.35650	1	2421	2	chrUn.!!$F3	2420
11	TraesCS5D01G052700	chrUn	30594278	30596164	1886	False	599.000000	902	89.22000	1	2266	2	chrUn.!!$F1	2265
12	TraesCS5D01G052700	chrUn	30666078	30667952	1874	False	596.500000	891	89.18650	1	2266	2	chrUn.!!$F2	2265
13	TraesCS5D01G052700	chr6D	984535	985244	709	True	1118.000000	1118	95.10500	1711	2421	1	chr6D.!!$R1	710
14	TraesCS5D01G052700	chr2A	99152606	99153813	1207	True	741.000000	1038	94.42500	1	1219	2	chr2A.!!$R2	1218
15	TraesCS5D01G052700	chr2A	728781768	728782498	730	True	521.000000	521	79.67300	991	1718	1	chr2A.!!$R1	727
16	TraesCS5D01G052700	chr2A	748226287	748227014	727	False	499.000000	499	79.23500	991	1715	1	chr2A.!!$F1	724
17	TraesCS5D01G052700	chr3B	592671084	592671597	513	False	536.000000	536	85.68700	1909	2424	1	chr3B.!!$F1	515
18	TraesCS5D01G052700	chr7A	660200772	660201502	730	True	510.000000	510	79.45600	991	1718	1	chr7A.!!$R1	727
19	TraesCS5D01G052700	chr7B	44881827	44882554	727	True	457.000000	457	78.23100	993	1718	1	chr7B.!!$R1	725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
329	366	1.078848	CCTGTCCTTTGCCTCTCCG	60.079	63.158	0.0	0.0	0.0	4.63	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1642	1818	1.813513	ACCACGAAAGGAATGCTCTG	58.186	50.0	0.0	0.0	0.0	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
229	260	3.887868	GCGGCGGCGATTTGGATT	61.888	61.111	36.87	0.00	0.00	3.01
329	366	1.078848	CCTGTCCTTTGCCTCTCCG	60.079	63.158	0.00	0.00	0.00	4.63
816	977	6.112734	TCTCTGTTTGTTTGCAACTTCTCTA	58.887	36.000	0.00	0.00	33.82	2.43
878	1039	7.394016	TGTACTTCTGCCATGAGAAAATAAGA	58.606	34.615	0.00	0.00	31.52	2.10
881	1042	8.181904	ACTTCTGCCATGAGAAAATAAGAAAA	57.818	30.769	0.00	0.00	31.52	2.29
1045	1206	6.578545	GCTAATATTTGCGGTTGTGTCATATG	59.421	38.462	6.13	0.00	0.00	1.78
1100	1261	5.589050	AGTCTAGAAAAAGAAAAAGGCGTGT	59.411	36.000	0.00	0.00	0.00	4.49
1288	1453	8.279970	AGATACGATTCATTTGTCCATTGAAA	57.720	30.769	0.00	0.00	33.45	2.69
1313	1478	5.358922	ACAAGTTGCTATGTTTTTGCACAT	58.641	33.333	1.81	0.00	40.61	3.21
1642	1818	3.455327	GAGCCTCCGTAACAAAGGATAC	58.545	50.000	0.00	0.00	35.75	2.24
1643	1819	2.835764	AGCCTCCGTAACAAAGGATACA	59.164	45.455	0.00	0.00	35.75	2.29
1648	1824	3.512329	TCCGTAACAAAGGATACAGAGCA	59.488	43.478	0.00	0.00	41.41	4.26
1696	1872	3.638160	ACAACTCAAAATGTGATGGCAGT	59.362	39.130	0.00	0.00	35.07	4.40
1729	4337	4.937620	TGATCTTCGGTTGAGAATCCAAAG	59.062	41.667	0.00	0.00	0.00	2.77
1799	4407	3.617263	GGTTGCTAGGTATGTGAAGAACG	59.383	47.826	0.00	0.00	0.00	3.95
1870	4478	4.883585	GCATGACCTCTTTTGATATGACCA	59.116	41.667	0.00	0.00	0.00	4.02
2179	4798	6.012337	TGCTGAAATTACATATTGGAGGGA	57.988	37.500	0.00	0.00	0.00	4.20
2342	4961	2.494073	TCCCTCACAACCAAACAACAAC	59.506	45.455	0.00	0.00	0.00	3.32
2424	5043	0.538746	CCAAACGCCACCTTAGGGTT	60.539	55.000	2.32	0.00	44.73	4.11
2425	5044	0.596082	CAAACGCCACCTTAGGGTTG	59.404	55.000	2.32	0.00	44.73	3.77
2426	5045	0.475044	AAACGCCACCTTAGGGTTGA	59.525	50.000	2.32	0.00	44.73	3.18
2427	5046	0.475044	AACGCCACCTTAGGGTTGAA	59.525	50.000	2.32	0.00	44.73	2.69
2428	5047	0.036306	ACGCCACCTTAGGGTTGAAG	59.964	55.000	2.32	0.00	44.73	3.02
2429	5048	0.676782	CGCCACCTTAGGGTTGAAGG	60.677	60.000	2.32	0.00	44.73	3.46
2430	5049	0.323451	GCCACCTTAGGGTTGAAGGG	60.323	60.000	2.32	0.00	46.68	3.95
2431	5050	0.323451	CCACCTTAGGGTTGAAGGGC	60.323	60.000	2.32	0.00	46.68	5.19
2432	5051	0.404040	CACCTTAGGGTTGAAGGGCA	59.596	55.000	2.32	0.00	46.68	5.36
2433	5052	1.154430	ACCTTAGGGTTGAAGGGCAA	58.846	50.000	2.32	0.00	46.68	4.52
2439	5058	3.365535	GTTGAAGGGCAACGGCAT	58.634	55.556	0.00	0.00	46.50	4.40
2440	5059	1.080569	GTTGAAGGGCAACGGCATG	60.081	57.895	0.00	0.00	46.50	4.06
2441	5060	2.929903	TTGAAGGGCAACGGCATGC	61.930	57.895	9.90	9.90	45.67	4.06
2449	5068	2.497107	GCAACGGCATGCAATAAGAT	57.503	45.000	21.36	0.00	45.70	2.40
2450	5069	2.121786	GCAACGGCATGCAATAAGATG	58.878	47.619	21.36	10.46	45.70	2.90
2451	5070	2.734670	CAACGGCATGCAATAAGATGG	58.265	47.619	21.36	0.00	0.00	3.51
2452	5071	1.321474	ACGGCATGCAATAAGATGGG	58.679	50.000	21.36	0.00	0.00	4.00
2453	5072	1.321474	CGGCATGCAATAAGATGGGT	58.679	50.000	21.36	0.00	0.00	4.51
2454	5073	1.682854	CGGCATGCAATAAGATGGGTT	59.317	47.619	21.36	0.00	0.00	4.11
2455	5074	2.544277	CGGCATGCAATAAGATGGGTTG	60.544	50.000	21.36	0.00	0.00	3.77
2456	5075	2.224113	GGCATGCAATAAGATGGGTTGG	60.224	50.000	21.36	0.00	0.00	3.77
2457	5076	2.431782	GCATGCAATAAGATGGGTTGGT	59.568	45.455	14.21	0.00	0.00	3.67
2458	5077	3.738899	GCATGCAATAAGATGGGTTGGTG	60.739	47.826	14.21	0.00	0.00	4.17
2459	5078	3.168035	TGCAATAAGATGGGTTGGTGT	57.832	42.857	0.00	0.00	0.00	4.16
2460	5079	3.505386	TGCAATAAGATGGGTTGGTGTT	58.495	40.909	0.00	0.00	0.00	3.32
2461	5080	3.257873	TGCAATAAGATGGGTTGGTGTTG	59.742	43.478	0.00	0.00	0.00	3.33
2462	5081	3.509575	GCAATAAGATGGGTTGGTGTTGA	59.490	43.478	0.00	0.00	0.00	3.18
2463	5082	4.380867	GCAATAAGATGGGTTGGTGTTGAG	60.381	45.833	0.00	0.00	0.00	3.02
2464	5083	1.620822	AAGATGGGTTGGTGTTGAGC	58.379	50.000	0.00	0.00	0.00	4.26
2465	5084	0.773644	AGATGGGTTGGTGTTGAGCT	59.226	50.000	0.00	0.00	0.00	4.09
2466	5085	0.883833	GATGGGTTGGTGTTGAGCTG	59.116	55.000	0.00	0.00	0.00	4.24
2467	5086	0.478072	ATGGGTTGGTGTTGAGCTGA	59.522	50.000	0.00	0.00	0.00	4.26
2468	5087	0.179020	TGGGTTGGTGTTGAGCTGAG	60.179	55.000	0.00	0.00	0.00	3.35
2469	5088	1.518903	GGGTTGGTGTTGAGCTGAGC	61.519	60.000	0.00	0.00	0.00	4.26
2470	5089	1.571460	GTTGGTGTTGAGCTGAGCG	59.429	57.895	0.00	0.00	0.00	5.03
2471	5090	1.146041	TTGGTGTTGAGCTGAGCGT	59.854	52.632	0.00	0.00	0.00	5.07
2472	5091	1.159713	TTGGTGTTGAGCTGAGCGTG	61.160	55.000	0.00	0.00	0.00	5.34
2473	5092	1.300931	GGTGTTGAGCTGAGCGTGA	60.301	57.895	0.00	0.00	0.00	4.35
2474	5093	1.560860	GGTGTTGAGCTGAGCGTGAC	61.561	60.000	0.00	0.00	0.00	3.67
2475	5094	1.661509	TGTTGAGCTGAGCGTGACG	60.662	57.895	0.00	0.00	0.00	4.35
2476	5095	1.661821	GTTGAGCTGAGCGTGACGT	60.662	57.895	6.91	0.00	0.00	4.34
2477	5096	1.661509	TTGAGCTGAGCGTGACGTG	60.662	57.895	6.91	0.00	0.00	4.49
2478	5097	2.049985	GAGCTGAGCGTGACGTGT	60.050	61.111	6.91	0.00	0.00	4.49
2479	5098	2.049985	AGCTGAGCGTGACGTGTC	60.050	61.111	6.91	4.65	0.00	3.67
2480	5099	3.106407	GCTGAGCGTGACGTGTCC	61.106	66.667	6.91	0.00	0.00	4.02
2481	5100	2.801162	CTGAGCGTGACGTGTCCG	60.801	66.667	6.91	2.46	40.83	4.79
2490	5109	2.662596	ACGTGTCCGTCCATGCAT	59.337	55.556	0.00	0.00	46.28	3.96
2491	5110	1.741401	ACGTGTCCGTCCATGCATG	60.741	57.895	20.19	20.19	46.28	4.06
2492	5111	2.793946	GTGTCCGTCCATGCATGC	59.206	61.111	21.69	11.82	0.00	4.06
2493	5112	2.039974	GTGTCCGTCCATGCATGCA	61.040	57.895	25.04	25.04	0.00	3.96
2494	5113	1.077572	TGTCCGTCCATGCATGCAT	60.078	52.632	27.46	27.46	37.08	3.96
2505	5124	3.135457	CATGCATGCACGGGCTGA	61.135	61.111	25.37	0.00	41.91	4.26
2506	5125	3.136123	ATGCATGCACGGGCTGAC	61.136	61.111	25.37	0.00	41.91	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
273	310	3.283751	ACGAGGAGGAGTAAGATCTGTG	58.716	50.000	0.00	0.00	0.00	3.66
816	977	6.014156	ACAGCAGTTTATACCTTGAGAAGAGT	60.014	38.462	0.00	0.00	0.00	3.24
1045	1206	2.610433	TGTCATCATCGAGACAAGCAC	58.390	47.619	2.98	0.00	41.42	4.40
1100	1261	6.846988	TCTATTGGCCCATAACATATGACAA	58.153	36.000	10.38	0.00	0.00	3.18
1288	1453	5.641209	TGTGCAAAAACATAGCAACTTGTTT	59.359	32.000	0.00	0.00	45.39	2.83
1313	1478	3.755112	TCCTAACATTGTGTCCAACGA	57.245	42.857	0.00	0.00	32.26	3.85
1642	1818	1.813513	ACCACGAAAGGAATGCTCTG	58.186	50.000	0.00	0.00	0.00	3.35
1643	1819	2.832129	TCTACCACGAAAGGAATGCTCT	59.168	45.455	0.00	0.00	0.00	4.09
1648	1824	5.045869	TGGATCTTTCTACCACGAAAGGAAT	60.046	40.000	11.90	1.69	46.16	3.01
1696	1872	4.752604	TCAACCGAAGATCAAAATCAACGA	59.247	37.500	0.00	0.00	35.94	3.85
1729	4337	2.663119	GAGTTGAAACGCCATTGCAATC	59.337	45.455	9.53	0.00	37.32	2.67
1799	4407	3.122369	CATCCATTGGAGGGAAGGC	57.878	57.895	11.78	0.00	38.09	4.35
1870	4478	7.453126	TCATACAACCCAAAGTCCATATTGTTT	59.547	33.333	0.00	0.00	31.63	2.83
2179	4798	7.503566	CCATTTTGTATGAGGTGGTGAGATTAT	59.496	37.037	0.00	0.00	0.00	1.28
2385	5004	2.357009	GGTTCACGAGCGAAGATACCTA	59.643	50.000	0.00	0.00	0.00	3.08
2424	5043	3.372730	GCATGCCGTTGCCCTTCA	61.373	61.111	6.36	0.00	36.60	3.02
2425	5044	2.229690	ATTGCATGCCGTTGCCCTTC	62.230	55.000	16.68	0.00	42.06	3.46
2426	5045	0.969917	TATTGCATGCCGTTGCCCTT	60.970	50.000	16.68	0.00	42.06	3.95
2427	5046	0.969917	TTATTGCATGCCGTTGCCCT	60.970	50.000	16.68	0.00	42.06	5.19
2428	5047	0.528249	CTTATTGCATGCCGTTGCCC	60.528	55.000	16.68	0.00	42.06	5.36
2429	5048	0.455410	TCTTATTGCATGCCGTTGCC	59.545	50.000	16.68	0.00	42.06	4.52
2430	5049	2.121786	CATCTTATTGCATGCCGTTGC	58.878	47.619	16.68	0.00	43.07	4.17
2431	5050	2.544277	CCCATCTTATTGCATGCCGTTG	60.544	50.000	16.68	1.81	0.00	4.10
2432	5051	1.682854	CCCATCTTATTGCATGCCGTT	59.317	47.619	16.68	2.05	0.00	4.44
2433	5052	1.321474	CCCATCTTATTGCATGCCGT	58.679	50.000	16.68	6.17	0.00	5.68
2434	5053	1.321474	ACCCATCTTATTGCATGCCG	58.679	50.000	16.68	0.00	0.00	5.69
2435	5054	2.224113	CCAACCCATCTTATTGCATGCC	60.224	50.000	16.68	0.00	0.00	4.40
2436	5055	2.431782	ACCAACCCATCTTATTGCATGC	59.568	45.455	11.82	11.82	0.00	4.06
2437	5056	3.448301	ACACCAACCCATCTTATTGCATG	59.552	43.478	0.00	0.00	0.00	4.06
2438	5057	3.711863	ACACCAACCCATCTTATTGCAT	58.288	40.909	0.00	0.00	0.00	3.96
2439	5058	3.168035	ACACCAACCCATCTTATTGCA	57.832	42.857	0.00	0.00	0.00	4.08
2440	5059	3.509575	TCAACACCAACCCATCTTATTGC	59.490	43.478	0.00	0.00	0.00	3.56
2441	5060	4.380867	GCTCAACACCAACCCATCTTATTG	60.381	45.833	0.00	0.00	0.00	1.90
2442	5061	3.763897	GCTCAACACCAACCCATCTTATT	59.236	43.478	0.00	0.00	0.00	1.40
2443	5062	3.010584	AGCTCAACACCAACCCATCTTAT	59.989	43.478	0.00	0.00	0.00	1.73
2444	5063	2.375174	AGCTCAACACCAACCCATCTTA	59.625	45.455	0.00	0.00	0.00	2.10
2445	5064	1.145738	AGCTCAACACCAACCCATCTT	59.854	47.619	0.00	0.00	0.00	2.40
2446	5065	0.773644	AGCTCAACACCAACCCATCT	59.226	50.000	0.00	0.00	0.00	2.90
2447	5066	0.883833	CAGCTCAACACCAACCCATC	59.116	55.000	0.00	0.00	0.00	3.51
2448	5067	0.478072	TCAGCTCAACACCAACCCAT	59.522	50.000	0.00	0.00	0.00	4.00
2449	5068	0.179020	CTCAGCTCAACACCAACCCA	60.179	55.000	0.00	0.00	0.00	4.51
2450	5069	1.518903	GCTCAGCTCAACACCAACCC	61.519	60.000	0.00	0.00	0.00	4.11
2451	5070	1.845809	CGCTCAGCTCAACACCAACC	61.846	60.000	0.00	0.00	0.00	3.77
2452	5071	1.160329	ACGCTCAGCTCAACACCAAC	61.160	55.000	0.00	0.00	0.00	3.77
2453	5072	1.146041	ACGCTCAGCTCAACACCAA	59.854	52.632	0.00	0.00	0.00	3.67
2454	5073	1.595109	CACGCTCAGCTCAACACCA	60.595	57.895	0.00	0.00	0.00	4.17
2455	5074	1.300931	TCACGCTCAGCTCAACACC	60.301	57.895	0.00	0.00	0.00	4.16
2456	5075	1.856012	GTCACGCTCAGCTCAACAC	59.144	57.895	0.00	0.00	0.00	3.32
2457	5076	1.661509	CGTCACGCTCAGCTCAACA	60.662	57.895	0.00	0.00	0.00	3.33
2458	5077	1.661821	ACGTCACGCTCAGCTCAAC	60.662	57.895	0.00	0.00	0.00	3.18
2459	5078	1.661509	CACGTCACGCTCAGCTCAA	60.662	57.895	0.00	0.00	0.00	3.02
2460	5079	2.050077	CACGTCACGCTCAGCTCA	60.050	61.111	0.00	0.00	0.00	4.26
2461	5080	2.049985	ACACGTCACGCTCAGCTC	60.050	61.111	0.00	0.00	0.00	4.09
2462	5081	2.049985	GACACGTCACGCTCAGCT	60.050	61.111	0.00	0.00	0.00	4.24
2463	5082	3.106407	GGACACGTCACGCTCAGC	61.106	66.667	0.00	0.00	0.00	4.26
2464	5083	2.801162	CGGACACGTCACGCTCAG	60.801	66.667	0.00	0.00	34.81	3.35
2475	5094	1.378882	ATGCATGCATGGACGGACAC	61.379	55.000	31.74	9.08	35.03	3.67
2476	5095	1.077572	ATGCATGCATGGACGGACA	60.078	52.632	31.74	15.78	35.03	4.02
2477	5096	3.831883	ATGCATGCATGGACGGAC	58.168	55.556	31.74	10.52	35.03	4.79
2488	5107	3.135457	TCAGCCCGTGCATGCATG	61.135	61.111	29.36	29.36	41.13	4.06
2489	5108	3.136123	GTCAGCCCGTGCATGCAT	61.136	61.111	25.64	3.87	41.13	3.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.