Multiple sequence alignment - TraesCS5D01G052500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G052500 chr5D 100.000 3033 0 0 1 3033 50568584 50571616 0.000000e+00 5602.0
1 TraesCS5D01G052500 chr5D 77.253 1587 234 60 841 2345 50635009 50636550 0.000000e+00 813.0
2 TraesCS5D01G052500 chr5D 79.965 1153 155 38 982 2079 42978161 42979292 0.000000e+00 780.0
3 TraesCS5D01G052500 chr5D 90.637 267 17 5 531 789 50653676 50653410 6.220000e-92 348.0
4 TraesCS5D01G052500 chr5D 91.701 241 12 5 553 789 50634765 50635001 8.110000e-86 327.0
5 TraesCS5D01G052500 chr5D 80.533 375 40 16 841 1190 50653402 50653036 1.080000e-64 257.0
6 TraesCS5D01G052500 chr5D 88.268 179 18 3 2854 3030 50636907 50637084 8.520000e-51 211.0
7 TraesCS5D01G052500 chr5D 79.273 275 17 15 442 676 42977809 42978083 4.050000e-34 156.0
8 TraesCS5D01G052500 chr5D 93.651 63 2 1 729 789 42978095 42978157 3.220000e-15 93.5
9 TraesCS5D01G052500 chr5A 79.668 1387 188 51 943 2262 39916070 39917429 0.000000e+00 913.0
10 TraesCS5D01G052500 chr5A 91.089 303 20 3 491 789 39915656 39915955 1.310000e-108 403.0
11 TraesCS5D01G052500 chr5B 79.908 1090 156 37 943 1983 53526843 53527918 0.000000e+00 741.0
12 TraesCS5D01G052500 chr5B 89.076 595 38 15 342 925 53526210 53526788 0.000000e+00 713.0
13 TraesCS5D01G052500 chr5B 80.740 784 116 23 2094 2853 53528081 53528853 2.030000e-161 579.0
14 TraesCS5D01G052500 chr5B 86.740 181 22 2 2854 3033 53534791 53534970 1.840000e-47 200.0
15 TraesCS5D01G052500 chr5B 74.675 308 54 20 7 307 523182221 523181931 6.870000e-22 115.0
16 TraesCS5D01G052500 chr7A 76.196 941 171 26 1054 1960 6297515 6298436 5.960000e-122 448.0
17 TraesCS5D01G052500 chr6B 80.667 150 16 8 165 313 574719287 574719424 1.490000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G052500 chr5D 50568584 50571616 3032 False 5602.000000 5602 100.000000 1 3033 1 chr5D.!!$F1 3032
1 TraesCS5D01G052500 chr5D 50634765 50637084 2319 False 450.333333 813 85.740667 553 3030 3 chr5D.!!$F3 2477
2 TraesCS5D01G052500 chr5D 42977809 42979292 1483 False 343.166667 780 84.296333 442 2079 3 chr5D.!!$F2 1637
3 TraesCS5D01G052500 chr5D 50653036 50653676 640 True 302.500000 348 85.585000 531 1190 2 chr5D.!!$R1 659
4 TraesCS5D01G052500 chr5A 39915656 39917429 1773 False 658.000000 913 85.378500 491 2262 2 chr5A.!!$F1 1771
5 TraesCS5D01G052500 chr5B 53526210 53528853 2643 False 677.666667 741 83.241333 342 2853 3 chr5B.!!$F2 2511
6 TraesCS5D01G052500 chr7A 6297515 6298436 921 False 448.000000 448 76.196000 1054 1960 1 chr7A.!!$F1 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.032017 TCTACTTCCTCCCCTCTGGC 60.032 60.0 0.00 0.0 0.0 4.85 F
1239 1403 0.241749 ACGACATGACGCCGTTTCTA 59.758 50.0 17.29 0.0 36.7 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1882 0.324943 ATGAAGGCGTAGTTGCAGGT 59.675 50.0 0.0 0.0 36.28 4.00 R
2551 2848 0.102481 GATACGGACGCCAGATGTGT 59.898 55.0 0.0 0.0 41.39 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.922364 GCCCCACCCTCCCCAAAA 61.922 66.667 0.00 0.00 0.00 2.44
45 46 2.119611 CCCCACCCTCCCCAAAAC 59.880 66.667 0.00 0.00 0.00 2.43
46 47 2.119611 CCCACCCTCCCCAAAACC 59.880 66.667 0.00 0.00 0.00 3.27
47 48 2.282887 CCACCCTCCCCAAAACCG 60.283 66.667 0.00 0.00 0.00 4.44
48 49 2.989253 CACCCTCCCCAAAACCGC 60.989 66.667 0.00 0.00 0.00 5.68
49 50 4.295199 ACCCTCCCCAAAACCGCC 62.295 66.667 0.00 0.00 0.00 6.13
89 90 2.290393 CCCCTGGCCATCCCTCTA 59.710 66.667 5.51 0.00 0.00 2.43
90 91 1.845205 CCCCTGGCCATCCCTCTAG 60.845 68.421 5.51 0.00 0.00 2.43
91 92 2.524204 CCCTGGCCATCCCTCTAGC 61.524 68.421 5.51 0.00 0.00 3.42
92 93 2.524204 CCTGGCCATCCCTCTAGCC 61.524 68.421 5.51 0.00 45.96 3.93
93 94 2.448542 TGGCCATCCCTCTAGCCC 60.449 66.667 0.00 0.00 45.14 5.19
94 95 3.253061 GGCCATCCCTCTAGCCCC 61.253 72.222 0.00 0.00 39.60 5.80
95 96 3.631046 GCCATCCCTCTAGCCCCG 61.631 72.222 0.00 0.00 0.00 5.73
96 97 3.631046 CCATCCCTCTAGCCCCGC 61.631 72.222 0.00 0.00 0.00 6.13
97 98 3.631046 CATCCCTCTAGCCCCGCC 61.631 72.222 0.00 0.00 0.00 6.13
98 99 3.851184 ATCCCTCTAGCCCCGCCT 61.851 66.667 0.00 0.00 0.00 5.52
99 100 4.860881 TCCCTCTAGCCCCGCCTG 62.861 72.222 0.00 0.00 0.00 4.85
111 112 2.978010 CGCCTGCGTCTGGGTTTT 60.978 61.111 2.83 0.00 34.35 2.43
112 113 2.551912 CGCCTGCGTCTGGGTTTTT 61.552 57.895 2.83 0.00 34.35 1.94
129 130 1.956297 TTTTCTCCGGCGAAGTTTCA 58.044 45.000 9.30 0.00 0.00 2.69
130 131 1.223187 TTTCTCCGGCGAAGTTTCAC 58.777 50.000 9.30 0.00 0.00 3.18
131 132 0.601841 TTCTCCGGCGAAGTTTCACC 60.602 55.000 9.30 0.00 0.00 4.02
132 133 1.301401 CTCCGGCGAAGTTTCACCA 60.301 57.895 9.30 0.00 29.86 4.17
133 134 0.673644 CTCCGGCGAAGTTTCACCAT 60.674 55.000 9.30 0.00 29.86 3.55
134 135 0.672401 TCCGGCGAAGTTTCACCATC 60.672 55.000 9.30 0.00 29.86 3.51
135 136 1.644786 CCGGCGAAGTTTCACCATCC 61.645 60.000 9.30 0.00 29.86 3.51
136 137 1.644786 CGGCGAAGTTTCACCATCCC 61.645 60.000 0.00 0.00 29.86 3.85
137 138 1.313091 GGCGAAGTTTCACCATCCCC 61.313 60.000 0.00 0.00 29.86 4.81
138 139 0.322546 GCGAAGTTTCACCATCCCCT 60.323 55.000 0.00 0.00 0.00 4.79
139 140 1.886655 GCGAAGTTTCACCATCCCCTT 60.887 52.381 0.00 0.00 0.00 3.95
140 141 2.084546 CGAAGTTTCACCATCCCCTTC 58.915 52.381 0.00 0.00 0.00 3.46
141 142 2.447443 GAAGTTTCACCATCCCCTTCC 58.553 52.381 0.00 0.00 0.00 3.46
142 143 1.760405 AGTTTCACCATCCCCTTCCT 58.240 50.000 0.00 0.00 0.00 3.36
143 144 1.355720 AGTTTCACCATCCCCTTCCTG 59.644 52.381 0.00 0.00 0.00 3.86
144 145 0.039618 TTTCACCATCCCCTTCCTGC 59.960 55.000 0.00 0.00 0.00 4.85
145 146 1.863155 TTCACCATCCCCTTCCTGCC 61.863 60.000 0.00 0.00 0.00 4.85
146 147 3.411517 ACCATCCCCTTCCTGCCG 61.412 66.667 0.00 0.00 0.00 5.69
147 148 4.883354 CCATCCCCTTCCTGCCGC 62.883 72.222 0.00 0.00 0.00 6.53
148 149 4.883354 CATCCCCTTCCTGCCGCC 62.883 72.222 0.00 0.00 0.00 6.13
154 155 4.785453 CTTCCTGCCGCCCTCCAC 62.785 72.222 0.00 0.00 0.00 4.02
164 165 4.371231 CCCTCCACCCCCTTCCCT 62.371 72.222 0.00 0.00 0.00 4.20
165 166 2.792222 CCTCCACCCCCTTCCCTA 59.208 66.667 0.00 0.00 0.00 3.53
166 167 1.084084 CCTCCACCCCCTTCCCTAA 59.916 63.158 0.00 0.00 0.00 2.69
167 168 0.988678 CCTCCACCCCCTTCCCTAAG 60.989 65.000 0.00 0.00 0.00 2.18
168 169 0.044244 CTCCACCCCCTTCCCTAAGA 59.956 60.000 0.00 0.00 34.37 2.10
169 170 0.728843 TCCACCCCCTTCCCTAAGAT 59.271 55.000 0.00 0.00 34.37 2.40
170 171 1.948976 TCCACCCCCTTCCCTAAGATA 59.051 52.381 0.00 0.00 34.37 1.98
171 172 2.090153 TCCACCCCCTTCCCTAAGATAG 60.090 54.545 0.00 0.00 34.37 2.08
172 173 2.090153 CCACCCCCTTCCCTAAGATAGA 60.090 54.545 0.00 0.00 34.37 1.98
173 174 3.441658 CCACCCCCTTCCCTAAGATAGAT 60.442 52.174 0.00 0.00 34.37 1.98
174 175 3.584848 CACCCCCTTCCCTAAGATAGATG 59.415 52.174 0.00 0.00 34.37 2.90
175 176 3.185455 CCCCCTTCCCTAAGATAGATGG 58.815 54.545 0.00 0.00 34.37 3.51
176 177 3.441658 CCCCCTTCCCTAAGATAGATGGT 60.442 52.174 0.00 0.00 34.37 3.55
177 178 3.584848 CCCCTTCCCTAAGATAGATGGTG 59.415 52.174 0.00 0.00 34.37 4.17
178 179 3.584848 CCCTTCCCTAAGATAGATGGTGG 59.415 52.174 0.00 0.00 34.37 4.61
179 180 3.584848 CCTTCCCTAAGATAGATGGTGGG 59.415 52.174 0.00 0.00 34.37 4.61
180 181 3.275848 TCCCTAAGATAGATGGTGGGG 57.724 52.381 0.00 0.00 34.27 4.96
181 182 2.527057 TCCCTAAGATAGATGGTGGGGT 59.473 50.000 0.00 0.00 34.63 4.95
182 183 3.735984 TCCCTAAGATAGATGGTGGGGTA 59.264 47.826 0.00 0.00 34.63 3.69
183 184 4.097418 CCCTAAGATAGATGGTGGGGTAG 58.903 52.174 0.00 0.00 0.00 3.18
184 185 3.515901 CCTAAGATAGATGGTGGGGTAGC 59.484 52.174 0.00 0.00 0.00 3.58
185 186 2.031495 AGATAGATGGTGGGGTAGCC 57.969 55.000 1.07 1.07 0.00 3.93
186 187 1.509961 AGATAGATGGTGGGGTAGCCT 59.490 52.381 11.48 0.00 0.00 4.58
187 188 1.625818 GATAGATGGTGGGGTAGCCTG 59.374 57.143 11.48 0.00 0.00 4.85
188 189 0.341961 TAGATGGTGGGGTAGCCTGT 59.658 55.000 11.48 0.00 0.00 4.00
189 190 0.550147 AGATGGTGGGGTAGCCTGTT 60.550 55.000 11.48 0.00 0.00 3.16
190 191 1.209621 GATGGTGGGGTAGCCTGTTA 58.790 55.000 11.48 0.00 0.00 2.41
191 192 1.141053 GATGGTGGGGTAGCCTGTTAG 59.859 57.143 11.48 0.00 0.00 2.34
192 193 0.178885 TGGTGGGGTAGCCTGTTAGT 60.179 55.000 11.48 0.00 0.00 2.24
193 194 0.252197 GGTGGGGTAGCCTGTTAGTG 59.748 60.000 11.48 0.00 0.00 2.74
194 195 1.272807 GTGGGGTAGCCTGTTAGTGA 58.727 55.000 11.48 0.00 0.00 3.41
195 196 1.207329 GTGGGGTAGCCTGTTAGTGAG 59.793 57.143 11.48 0.00 0.00 3.51
196 197 0.178301 GGGGTAGCCTGTTAGTGAGC 59.822 60.000 11.48 0.00 0.00 4.26
197 198 1.196012 GGGTAGCCTGTTAGTGAGCT 58.804 55.000 2.95 0.00 39.37 4.09
198 199 1.137282 GGGTAGCCTGTTAGTGAGCTC 59.863 57.143 6.82 6.82 36.79 4.09
199 200 1.137282 GGTAGCCTGTTAGTGAGCTCC 59.863 57.143 12.15 2.40 36.79 4.70
200 201 2.104170 GTAGCCTGTTAGTGAGCTCCT 58.896 52.381 12.15 10.46 36.79 3.69
201 202 1.650528 AGCCTGTTAGTGAGCTCCTT 58.349 50.000 12.15 1.41 0.00 3.36
202 203 1.552792 AGCCTGTTAGTGAGCTCCTTC 59.447 52.381 12.15 1.80 0.00 3.46
203 204 1.552792 GCCTGTTAGTGAGCTCCTTCT 59.447 52.381 12.15 9.59 0.00 2.85
204 205 2.027653 GCCTGTTAGTGAGCTCCTTCTT 60.028 50.000 12.15 0.00 0.00 2.52
205 206 3.558109 GCCTGTTAGTGAGCTCCTTCTTT 60.558 47.826 12.15 0.00 0.00 2.52
206 207 4.249661 CCTGTTAGTGAGCTCCTTCTTTC 58.750 47.826 12.15 4.98 0.00 2.62
207 208 4.020662 CCTGTTAGTGAGCTCCTTCTTTCT 60.021 45.833 12.15 1.28 0.00 2.52
208 209 5.186021 CCTGTTAGTGAGCTCCTTCTTTCTA 59.814 44.000 12.15 0.37 0.00 2.10
209 210 6.026947 TGTTAGTGAGCTCCTTCTTTCTAC 57.973 41.667 12.15 0.00 0.00 2.59
210 211 5.775701 TGTTAGTGAGCTCCTTCTTTCTACT 59.224 40.000 12.15 7.02 0.00 2.57
211 212 6.267928 TGTTAGTGAGCTCCTTCTTTCTACTT 59.732 38.462 12.15 0.00 0.00 2.24
212 213 5.400066 AGTGAGCTCCTTCTTTCTACTTC 57.600 43.478 12.15 0.00 0.00 3.01
213 214 4.221924 AGTGAGCTCCTTCTTTCTACTTCC 59.778 45.833 12.15 0.00 0.00 3.46
214 215 4.221924 GTGAGCTCCTTCTTTCTACTTCCT 59.778 45.833 12.15 0.00 0.00 3.36
215 216 4.464597 TGAGCTCCTTCTTTCTACTTCCTC 59.535 45.833 12.15 0.00 0.00 3.71
216 217 3.772572 AGCTCCTTCTTTCTACTTCCTCC 59.227 47.826 0.00 0.00 0.00 4.30
217 218 3.118555 GCTCCTTCTTTCTACTTCCTCCC 60.119 52.174 0.00 0.00 0.00 4.30
218 219 3.451890 TCCTTCTTTCTACTTCCTCCCC 58.548 50.000 0.00 0.00 0.00 4.81
219 220 3.079226 TCCTTCTTTCTACTTCCTCCCCT 59.921 47.826 0.00 0.00 0.00 4.79
220 221 3.452990 CCTTCTTTCTACTTCCTCCCCTC 59.547 52.174 0.00 0.00 0.00 4.30
221 222 4.358214 CTTCTTTCTACTTCCTCCCCTCT 58.642 47.826 0.00 0.00 0.00 3.69
222 223 3.714144 TCTTTCTACTTCCTCCCCTCTG 58.286 50.000 0.00 0.00 0.00 3.35
223 224 2.552093 TTCTACTTCCTCCCCTCTGG 57.448 55.000 0.00 0.00 0.00 3.86
224 225 0.032017 TCTACTTCCTCCCCTCTGGC 60.032 60.000 0.00 0.00 0.00 4.85
225 226 1.003051 TACTTCCTCCCCTCTGGCC 59.997 63.158 0.00 0.00 0.00 5.36
226 227 1.528341 TACTTCCTCCCCTCTGGCCT 61.528 60.000 3.32 0.00 0.00 5.19
227 228 2.041265 TTCCTCCCCTCTGGCCTC 59.959 66.667 3.32 0.00 0.00 4.70
228 229 3.642741 TTCCTCCCCTCTGGCCTCC 62.643 68.421 3.32 0.00 0.00 4.30
230 231 4.101077 CTCCCCTCTGGCCTCCCT 62.101 72.222 3.32 0.00 0.00 4.20
231 232 4.095400 TCCCCTCTGGCCTCCCTC 62.095 72.222 3.32 0.00 0.00 4.30
233 234 4.421554 CCCTCTGGCCTCCCTCCA 62.422 72.222 3.32 0.00 0.00 3.86
239 240 4.475135 GGCCTCCCTCCAGCGAAC 62.475 72.222 0.00 0.00 0.00 3.95
240 241 3.394836 GCCTCCCTCCAGCGAACT 61.395 66.667 0.00 0.00 0.00 3.01
241 242 2.960688 GCCTCCCTCCAGCGAACTT 61.961 63.158 0.00 0.00 0.00 2.66
242 243 1.219393 CCTCCCTCCAGCGAACTTC 59.781 63.158 0.00 0.00 0.00 3.01
243 244 1.261238 CCTCCCTCCAGCGAACTTCT 61.261 60.000 0.00 0.00 0.00 2.85
244 245 0.610687 CTCCCTCCAGCGAACTTCTT 59.389 55.000 0.00 0.00 0.00 2.52
245 246 0.608640 TCCCTCCAGCGAACTTCTTC 59.391 55.000 0.00 0.00 0.00 2.87
253 254 3.442996 CGAACTTCTTCGGCCATCT 57.557 52.632 2.24 0.00 44.73 2.90
254 255 1.281899 CGAACTTCTTCGGCCATCTC 58.718 55.000 2.24 0.00 44.73 2.75
255 256 1.404181 CGAACTTCTTCGGCCATCTCA 60.404 52.381 2.24 0.00 44.73 3.27
256 257 2.699954 GAACTTCTTCGGCCATCTCAA 58.300 47.619 2.24 0.00 0.00 3.02
257 258 2.859165 ACTTCTTCGGCCATCTCAAA 57.141 45.000 2.24 0.00 0.00 2.69
258 259 3.140325 ACTTCTTCGGCCATCTCAAAA 57.860 42.857 2.24 0.00 0.00 2.44
259 260 3.690460 ACTTCTTCGGCCATCTCAAAAT 58.310 40.909 2.24 0.00 0.00 1.82
260 261 3.691609 ACTTCTTCGGCCATCTCAAAATC 59.308 43.478 2.24 0.00 0.00 2.17
261 262 2.279741 TCTTCGGCCATCTCAAAATCG 58.720 47.619 2.24 0.00 0.00 3.34
262 263 2.093711 TCTTCGGCCATCTCAAAATCGA 60.094 45.455 2.24 0.00 0.00 3.59
263 264 1.651987 TCGGCCATCTCAAAATCGAC 58.348 50.000 2.24 0.00 0.00 4.20
264 265 1.207089 TCGGCCATCTCAAAATCGACT 59.793 47.619 2.24 0.00 0.00 4.18
265 266 2.009774 CGGCCATCTCAAAATCGACTT 58.990 47.619 2.24 0.00 0.00 3.01
266 267 2.030946 CGGCCATCTCAAAATCGACTTC 59.969 50.000 2.24 0.00 0.00 3.01
267 268 3.274288 GGCCATCTCAAAATCGACTTCT 58.726 45.455 0.00 0.00 0.00 2.85
268 269 3.311048 GGCCATCTCAAAATCGACTTCTC 59.689 47.826 0.00 0.00 0.00 2.87
269 270 3.000724 GCCATCTCAAAATCGACTTCTCG 59.999 47.826 0.00 0.00 41.65 4.04
283 284 7.507672 TCGACTTCTCGAAAGCTAAAATTAG 57.492 36.000 0.00 0.00 46.04 1.73
284 285 7.088905 TCGACTTCTCGAAAGCTAAAATTAGT 58.911 34.615 0.00 0.00 46.04 2.24
285 286 7.272948 TCGACTTCTCGAAAGCTAAAATTAGTC 59.727 37.037 0.00 0.00 46.04 2.59
286 287 7.279470 ACTTCTCGAAAGCTAAAATTAGTCG 57.721 36.000 0.00 4.28 33.32 4.18
287 288 7.088905 ACTTCTCGAAAGCTAAAATTAGTCGA 58.911 34.615 11.46 11.46 35.10 4.20
288 289 6.866179 TCTCGAAAGCTAAAATTAGTCGAC 57.134 37.500 7.70 7.70 33.63 4.20
289 290 6.618811 TCTCGAAAGCTAAAATTAGTCGACT 58.381 36.000 23.66 23.66 33.63 4.18
290 291 6.527023 TCTCGAAAGCTAAAATTAGTCGACTG 59.473 38.462 28.12 10.31 33.63 3.51
291 292 6.384224 TCGAAAGCTAAAATTAGTCGACTGA 58.616 36.000 28.12 20.78 33.63 3.41
292 293 6.307318 TCGAAAGCTAAAATTAGTCGACTGAC 59.693 38.462 28.12 6.80 45.86 3.51
329 330 8.682710 TGTGGAGAATAAAAATGTATTACTGCC 58.317 33.333 0.00 0.00 0.00 4.85
330 331 7.855904 GTGGAGAATAAAAATGTATTACTGCCG 59.144 37.037 0.00 0.00 0.00 5.69
331 332 7.771361 TGGAGAATAAAAATGTATTACTGCCGA 59.229 33.333 0.00 0.00 0.00 5.54
332 333 8.617809 GGAGAATAAAAATGTATTACTGCCGAA 58.382 33.333 0.00 0.00 0.00 4.30
333 334 9.651718 GAGAATAAAAATGTATTACTGCCGAAG 57.348 33.333 0.00 0.00 0.00 3.79
334 335 9.391006 AGAATAAAAATGTATTACTGCCGAAGA 57.609 29.630 0.00 0.00 0.00 2.87
335 336 9.434559 GAATAAAAATGTATTACTGCCGAAGAC 57.565 33.333 0.00 0.00 0.00 3.01
336 337 8.732746 ATAAAAATGTATTACTGCCGAAGACT 57.267 30.769 0.00 0.00 0.00 3.24
337 338 7.448748 AAAAATGTATTACTGCCGAAGACTT 57.551 32.000 0.00 0.00 0.00 3.01
338 339 6.663944 AAATGTATTACTGCCGAAGACTTC 57.336 37.500 5.03 5.03 0.00 3.01
405 406 5.204292 TCCTGCTGTCTAGTTATCAGATGT 58.796 41.667 0.00 0.00 0.00 3.06
418 419 6.828785 AGTTATCAGATGTATTTTCGGCCTTT 59.171 34.615 0.00 0.00 0.00 3.11
420 421 4.584874 TCAGATGTATTTTCGGCCTTTCA 58.415 39.130 0.00 0.00 0.00 2.69
421 422 4.635765 TCAGATGTATTTTCGGCCTTTCAG 59.364 41.667 0.00 0.00 0.00 3.02
423 424 5.584649 CAGATGTATTTTCGGCCTTTCAGTA 59.415 40.000 0.00 0.00 0.00 2.74
424 425 6.260936 CAGATGTATTTTCGGCCTTTCAGTAT 59.739 38.462 0.00 0.00 0.00 2.12
425 426 6.828785 AGATGTATTTTCGGCCTTTCAGTATT 59.171 34.615 0.00 0.00 0.00 1.89
547 562 1.734465 GTCCCTTGACTTGATTCGCAG 59.266 52.381 0.00 0.00 38.53 5.18
596 615 5.066893 TGAAAATTGTGAGGCTGCTATCATC 59.933 40.000 10.42 5.04 0.00 2.92
603 639 1.615883 AGGCTGCTATCATCCTACGTG 59.384 52.381 0.00 0.00 37.08 4.49
629 676 1.334960 GCCTTCGTCAACCAATGTGTG 60.335 52.381 0.00 0.00 0.00 3.82
687 742 5.473504 CCTGGCTTGTTAAGATGTGTTTACT 59.526 40.000 0.00 0.00 0.00 2.24
833 898 7.187824 AGGCTAGTAGAGTGATGAATTTTGA 57.812 36.000 0.00 0.00 0.00 2.69
834 899 7.044798 AGGCTAGTAGAGTGATGAATTTTGAC 58.955 38.462 0.00 0.00 0.00 3.18
835 900 7.044798 GGCTAGTAGAGTGATGAATTTTGACT 58.955 38.462 0.00 0.00 0.00 3.41
836 901 7.550906 GGCTAGTAGAGTGATGAATTTTGACTT 59.449 37.037 0.00 0.00 0.00 3.01
849 914 4.893424 TTTTGACTTTTGAGTCTTCCCG 57.107 40.909 7.92 0.00 39.41 5.14
850 915 2.543777 TGACTTTTGAGTCTTCCCGG 57.456 50.000 0.00 0.00 39.41 5.73
853 918 1.985895 ACTTTTGAGTCTTCCCGGGAT 59.014 47.619 27.48 9.62 0.00 3.85
893 960 5.834204 ACTCCCTGCGTAGTTAATTAGATCT 59.166 40.000 0.00 0.00 0.00 2.75
925 992 8.553459 AAGTAATGAACAAGACCAGTTAGATG 57.447 34.615 0.00 0.00 0.00 2.90
926 993 7.106239 AGTAATGAACAAGACCAGTTAGATGG 58.894 38.462 0.00 0.00 46.47 3.51
927 994 5.762179 ATGAACAAGACCAGTTAGATGGA 57.238 39.130 0.00 0.00 43.57 3.41
928 995 5.560722 TGAACAAGACCAGTTAGATGGAA 57.439 39.130 0.00 0.00 43.57 3.53
930 997 5.071788 TGAACAAGACCAGTTAGATGGAAGT 59.928 40.000 0.00 0.00 43.57 3.01
931 998 5.568620 ACAAGACCAGTTAGATGGAAGTT 57.431 39.130 0.00 0.00 43.57 2.66
932 999 6.681729 ACAAGACCAGTTAGATGGAAGTTA 57.318 37.500 0.00 0.00 43.57 2.24
933 1000 7.074653 ACAAGACCAGTTAGATGGAAGTTAA 57.925 36.000 0.00 0.00 43.57 2.01
934 1001 7.514721 ACAAGACCAGTTAGATGGAAGTTAAA 58.485 34.615 0.00 0.00 43.57 1.52
936 1003 8.846211 CAAGACCAGTTAGATGGAAGTTAAAAA 58.154 33.333 0.00 0.00 43.57 1.94
977 1092 4.472702 GACGCCCAGTCGTAACTC 57.527 61.111 0.00 0.00 43.42 3.01
1014 1130 6.183360 GCTCGCCCTTTGTATTTAAGAGAATT 60.183 38.462 0.00 0.00 0.00 2.17
1015 1131 7.316544 TCGCCCTTTGTATTTAAGAGAATTC 57.683 36.000 0.00 0.00 0.00 2.17
1016 1132 7.110155 TCGCCCTTTGTATTTAAGAGAATTCT 58.890 34.615 7.95 7.95 34.29 2.40
1051 1182 2.476185 GCCGAGATTGAACGAACAATGG 60.476 50.000 14.06 10.98 40.03 3.16
1094 1231 2.960384 TGCTATTGCCATTAGCTGCATT 59.040 40.909 16.90 0.00 42.08 3.56
1213 1356 3.849951 GCCCGGGCTTCGAGATCA 61.850 66.667 38.76 0.00 42.43 2.92
1222 1368 1.257415 GCTTCGAGATCATCTGCAACG 59.743 52.381 0.00 0.00 0.00 4.10
1239 1403 0.241749 ACGACATGACGCCGTTTCTA 59.758 50.000 17.29 0.00 36.70 2.10
1244 1408 2.507769 GACGCCGTTTCTACCGGG 60.508 66.667 6.32 0.00 45.57 5.73
1250 1414 4.747529 GTTTCTACCGGGCGCCGT 62.748 66.667 22.54 16.60 46.80 5.68
1251 1415 4.006357 TTTCTACCGGGCGCCGTT 62.006 61.111 22.54 9.51 46.80 4.44
1253 1417 3.938019 TTCTACCGGGCGCCGTTTC 62.938 63.158 22.54 5.16 46.80 2.78
1285 1467 2.280797 GCGTGCTGAACCTGACCA 60.281 61.111 0.00 0.00 0.00 4.02
1344 1532 3.084579 CATCAGTGCTTCGACGCC 58.915 61.111 11.76 2.96 0.00 5.68
1385 1588 2.125512 GTTCGACGGCAGGCTGAT 60.126 61.111 20.86 1.75 0.00 2.90
1389 1592 2.821366 GACGGCAGGCTGATGGTG 60.821 66.667 20.86 4.53 0.00 4.17
1424 1627 1.252215 TACCGCATCTCCAACACCGA 61.252 55.000 0.00 0.00 0.00 4.69
1438 1641 1.336056 ACACCGAGAACGAGCTCTTTC 60.336 52.381 21.95 21.95 42.66 2.62
1475 1678 3.506096 CGTCTACGCCGGCAGAGA 61.506 66.667 28.98 24.18 0.00 3.10
1498 1711 0.588252 CAAGGTCCAGAACGCAACAG 59.412 55.000 0.00 0.00 0.00 3.16
1522 1735 2.820037 GCTACTTCAGCGGGTGCC 60.820 66.667 1.51 0.00 44.31 5.01
1535 1748 2.437359 GTGCCTGGCCTACTGCAG 60.437 66.667 17.53 13.48 43.89 4.41
1538 1751 2.437359 CCTGGCCTACTGCAGCAC 60.437 66.667 15.27 0.00 43.89 4.40
1598 1811 1.738099 GCTGCCACGTCGACATCTT 60.738 57.895 17.16 0.00 0.00 2.40
1623 1839 0.613572 TGCTCACCGACACCAGGATA 60.614 55.000 0.00 0.00 0.00 2.59
1630 1846 1.553248 CCGACACCAGGATAAGGTTCA 59.447 52.381 0.00 0.00 37.23 3.18
1703 1922 4.675976 TCGTGGAGAGGAAAAACTACAA 57.324 40.909 0.00 0.00 0.00 2.41
1709 1928 4.451435 GGAGAGGAAAAACTACAACTTCCG 59.549 45.833 0.00 0.00 41.87 4.30
1738 1957 2.282958 TGAAGAGGACGCCGGAGT 60.283 61.111 11.88 11.88 0.00 3.85
1740 1959 2.282958 AAGAGGACGCCGGAGTCA 60.283 61.111 34.59 0.00 42.62 3.41
1804 2026 1.004320 ATCCGCAACCGCAGTAACA 60.004 52.632 0.00 0.00 38.40 2.41
1805 2027 1.019278 ATCCGCAACCGCAGTAACAG 61.019 55.000 0.00 0.00 38.40 3.16
1886 2108 1.994779 CTGCGAAAATTCCACCAATGC 59.005 47.619 0.00 0.00 0.00 3.56
1910 2132 3.489355 TGGGGTATATCTGCAAATGCTG 58.511 45.455 6.97 6.45 42.66 4.41
1914 2136 4.768968 GGGTATATCTGCAAATGCTGGAAT 59.231 41.667 11.61 8.34 42.66 3.01
1973 2195 5.751028 GCACAGGTAAGAGCAATTCTAGTAG 59.249 44.000 0.00 0.00 34.14 2.57
1974 2196 6.628398 GCACAGGTAAGAGCAATTCTAGTAGT 60.628 42.308 0.00 0.00 34.14 2.73
1975 2197 7.416438 GCACAGGTAAGAGCAATTCTAGTAGTA 60.416 40.741 0.00 0.00 34.14 1.82
1979 2210 7.503230 AGGTAAGAGCAATTCTAGTAGTACTCC 59.497 40.741 5.96 0.00 34.14 3.85
1986 2217 6.771749 GCAATTCTAGTAGTACTCCCTAGTGA 59.228 42.308 20.62 14.50 36.36 3.41
1996 2227 4.970860 ACTCCCTAGTGACGTAGCTATA 57.029 45.455 0.00 0.00 33.57 1.31
2124 2407 4.561500 TCACCCGAACTCCATAAAATCA 57.438 40.909 0.00 0.00 0.00 2.57
2143 2426 4.799564 TCAGCCAGTTTGAAGTTTTTGT 57.200 36.364 0.00 0.00 0.00 2.83
2159 2442 8.981724 AAGTTTTTGTCTTAAAAAGTCACTCC 57.018 30.769 5.87 0.00 33.16 3.85
2162 2445 7.455641 TTTTGTCTTAAAAAGTCACTCCACA 57.544 32.000 0.00 0.00 0.00 4.17
2164 2447 7.639113 TTGTCTTAAAAAGTCACTCCACAAT 57.361 32.000 0.00 0.00 0.00 2.71
2167 2450 7.771361 TGTCTTAAAAAGTCACTCCACAATGTA 59.229 33.333 0.00 0.00 0.00 2.29
2172 2455 3.786553 AGTCACTCCACAATGTACCCTA 58.213 45.455 0.00 0.00 0.00 3.53
2185 2468 4.357313 TGTACCCTATAACCAACCCTCT 57.643 45.455 0.00 0.00 0.00 3.69
2186 2469 4.702196 TGTACCCTATAACCAACCCTCTT 58.298 43.478 0.00 0.00 0.00 2.85
2192 2475 5.368523 CCCTATAACCAACCCTCTTCATACA 59.631 44.000 0.00 0.00 0.00 2.29
2208 2491 9.276590 CTCTTCATACATGTAATATTTGGAGCA 57.723 33.333 10.14 0.00 0.00 4.26
2227 2510 4.908966 GCATACTGCAAAATCCACAAAC 57.091 40.909 0.00 0.00 44.26 2.93
2233 2516 4.887071 ACTGCAAAATCCACAAACAGACTA 59.113 37.500 0.00 0.00 0.00 2.59
2234 2517 5.536161 ACTGCAAAATCCACAAACAGACTAT 59.464 36.000 0.00 0.00 0.00 2.12
2244 2527 7.227873 TCCACAAACAGACTATGTATTTGGAA 58.772 34.615 0.00 0.00 43.00 3.53
2252 2535 6.094048 CAGACTATGTATTTGGAAGTTGGTGG 59.906 42.308 0.00 0.00 0.00 4.61
2258 2541 4.664688 ATTTGGAAGTTGGTGGAGAGAT 57.335 40.909 0.00 0.00 0.00 2.75
2263 2546 7.451731 TTGGAAGTTGGTGGAGAGATTATAT 57.548 36.000 0.00 0.00 0.00 0.86
2287 2570 5.374921 AGCTCTCTTCATCCATATTGGTTG 58.625 41.667 0.00 0.00 39.03 3.77
2288 2571 4.518211 GCTCTCTTCATCCATATTGGTTGG 59.482 45.833 5.10 0.00 37.71 3.77
2299 2582 5.372363 TCCATATTGGTTGGTGGACATCTAT 59.628 40.000 0.00 0.00 39.03 1.98
2331 2620 7.430760 AGTTGTTGGAGAGAATATAGAGCTT 57.569 36.000 0.00 0.00 0.00 3.74
2350 2639 8.845413 AGAGCTTTCTTCATCCATATATTGAC 57.155 34.615 0.00 0.00 0.00 3.18
2357 2646 2.851263 TCCATATATTGACACCCGGC 57.149 50.000 0.00 0.00 0.00 6.13
2362 2651 0.463116 ATATTGACACCCGGCGAACC 60.463 55.000 9.30 0.00 0.00 3.62
2370 2659 1.747367 CCCGGCGAACCAAGCATAA 60.747 57.895 9.30 0.00 36.08 1.90
2382 2671 4.079253 ACCAAGCATAACTTAGGTGGTTG 58.921 43.478 14.71 14.71 45.73 3.77
2404 2697 3.119352 GGATTCTTTGTGGTGGAATCAGC 60.119 47.826 14.15 0.00 43.92 4.26
2407 2700 0.482446 TTTGTGGTGGAATCAGCCCT 59.518 50.000 0.00 0.00 40.42 5.19
2412 2705 2.040442 TGGAATCAGCCCTCCCGA 59.960 61.111 0.00 0.00 0.00 5.14
2413 2706 2.066393 TGGAATCAGCCCTCCCGAG 61.066 63.158 0.00 0.00 0.00 4.63
2417 2710 1.961180 AATCAGCCCTCCCGAGTTCG 61.961 60.000 0.00 0.00 39.44 3.95
2419 2712 2.756283 AGCCCTCCCGAGTTCGAG 60.756 66.667 2.59 0.00 43.02 4.04
2426 2719 0.107312 TCCCGAGTTCGAGTCCTAGG 60.107 60.000 0.82 0.82 43.02 3.02
2427 2720 0.394080 CCCGAGTTCGAGTCCTAGGT 60.394 60.000 9.08 0.00 43.02 3.08
2428 2721 1.461559 CCGAGTTCGAGTCCTAGGTT 58.538 55.000 9.08 0.00 43.02 3.50
2434 2727 1.568504 TCGAGTCCTAGGTTTGGCAT 58.431 50.000 9.08 0.00 0.00 4.40
2436 2729 1.207089 CGAGTCCTAGGTTTGGCATGA 59.793 52.381 9.08 0.00 0.00 3.07
2455 2748 3.860641 TGAGTGCTCGCATATTTTCTGA 58.139 40.909 0.00 0.00 0.00 3.27
2461 2754 7.934457 AGTGCTCGCATATTTTCTGAATTTAT 58.066 30.769 0.00 0.00 0.00 1.40
2482 2777 8.506168 TTTATTCAGGTTCTTCGATGCTATTT 57.494 30.769 0.00 0.00 0.00 1.40
2483 2778 9.607988 TTTATTCAGGTTCTTCGATGCTATTTA 57.392 29.630 0.00 0.00 0.00 1.40
2484 2779 9.607988 TTATTCAGGTTCTTCGATGCTATTTAA 57.392 29.630 0.00 0.00 0.00 1.52
2486 2781 9.778741 ATTCAGGTTCTTCGATGCTATTTAATA 57.221 29.630 0.00 0.00 0.00 0.98
2487 2782 8.818141 TCAGGTTCTTCGATGCTATTTAATAG 57.182 34.615 7.56 7.56 35.94 1.73
2488 2783 8.421784 TCAGGTTCTTCGATGCTATTTAATAGT 58.578 33.333 12.82 0.00 35.29 2.12
2501 2798 5.982890 ATTTAATAGTGTATGGCATGCCC 57.017 39.130 33.44 18.85 34.56 5.36
2502 2799 1.896220 AATAGTGTATGGCATGCCCG 58.104 50.000 33.44 0.00 35.87 6.13
2503 2800 1.055849 ATAGTGTATGGCATGCCCGA 58.944 50.000 33.44 18.71 35.87 5.14
2514 2811 1.743772 GCATGCCCGACAACTATGAGT 60.744 52.381 6.36 0.00 0.00 3.41
2515 2812 1.935873 CATGCCCGACAACTATGAGTG 59.064 52.381 0.00 0.00 0.00 3.51
2516 2813 0.249120 TGCCCGACAACTATGAGTGG 59.751 55.000 0.00 0.00 0.00 4.00
2521 2818 3.132289 CCCGACAACTATGAGTGGTATGT 59.868 47.826 0.00 0.00 31.13 2.29
2522 2819 4.112634 CCGACAACTATGAGTGGTATGTG 58.887 47.826 0.00 0.00 31.13 3.21
2531 2828 3.724478 TGAGTGGTATGTGGAGAGGAAT 58.276 45.455 0.00 0.00 0.00 3.01
2543 2840 4.410555 GTGGAGAGGAATATTTCAGGACCT 59.589 45.833 0.00 0.00 0.00 3.85
2551 2848 7.182060 AGGAATATTTCAGGACCTTTTGCTTA 58.818 34.615 0.00 0.00 0.00 3.09
2555 2852 3.569194 TCAGGACCTTTTGCTTACACA 57.431 42.857 0.00 0.00 0.00 3.72
2557 2854 4.072131 TCAGGACCTTTTGCTTACACATC 58.928 43.478 0.00 0.00 0.00 3.06
2560 2857 3.191371 GGACCTTTTGCTTACACATCTGG 59.809 47.826 0.00 0.00 0.00 3.86
2562 2859 2.414559 CCTTTTGCTTACACATCTGGCG 60.415 50.000 0.00 0.00 0.00 5.69
2564 2861 1.438651 TTGCTTACACATCTGGCGTC 58.561 50.000 0.00 0.00 0.00 5.19
2566 2863 1.421410 GCTTACACATCTGGCGTCCG 61.421 60.000 0.00 0.00 0.00 4.79
2570 2867 0.102481 ACACATCTGGCGTCCGTATC 59.898 55.000 0.00 0.00 0.00 2.24
2576 2873 1.206132 TCTGGCGTCCGTATCAATGTT 59.794 47.619 0.00 0.00 0.00 2.71
2583 2880 3.078837 GTCCGTATCAATGTTGGTTGGT 58.921 45.455 0.00 0.00 0.00 3.67
2584 2881 4.255301 GTCCGTATCAATGTTGGTTGGTA 58.745 43.478 0.00 0.00 0.00 3.25
2592 2889 1.961793 TGTTGGTTGGTAGCACTCAC 58.038 50.000 0.00 0.00 0.00 3.51
2598 2895 2.434359 GGTAGCACTCACCACCGC 60.434 66.667 0.00 0.00 36.01 5.68
2599 2896 2.657237 GTAGCACTCACCACCGCT 59.343 61.111 0.00 0.00 38.51 5.52
2610 2907 4.308458 CACCGCTGACCCGTTCCA 62.308 66.667 0.00 0.00 0.00 3.53
2611 2908 4.003788 ACCGCTGACCCGTTCCAG 62.004 66.667 0.00 0.00 0.00 3.86
2613 2910 2.579201 CGCTGACCCGTTCCAGAT 59.421 61.111 0.00 0.00 32.37 2.90
2625 2922 2.028476 CGTTCCAGATCCTACCACACAA 60.028 50.000 0.00 0.00 0.00 3.33
2638 2935 1.836604 ACACAACATGGTTGCCCCC 60.837 57.895 8.89 0.00 0.00 5.40
2639 2936 2.600173 ACAACATGGTTGCCCCCG 60.600 61.111 8.89 0.00 0.00 5.73
2662 2959 0.899717 GAGCTTCCCACCATTTGCCA 60.900 55.000 0.00 0.00 0.00 4.92
2665 2962 1.856629 CTTCCCACCATTTGCCAGAT 58.143 50.000 0.00 0.00 0.00 2.90
2667 2964 0.703488 TCCCACCATTTGCCAGATCA 59.297 50.000 0.00 0.00 0.00 2.92
2674 2971 0.611618 ATTTGCCAGATCACCGCCAA 60.612 50.000 0.00 0.00 0.00 4.52
2675 2972 0.611618 TTTGCCAGATCACCGCCAAT 60.612 50.000 0.00 0.00 0.00 3.16
2676 2973 1.314534 TTGCCAGATCACCGCCAATG 61.315 55.000 0.00 0.00 0.00 2.82
2717 3016 1.519719 GCCTGTCTCTGCCACTAGG 59.480 63.158 0.00 0.00 38.23 3.02
2747 3049 1.447489 CGACTTGCTGAGGAGGCTG 60.447 63.158 0.00 0.00 0.00 4.85
2748 3050 1.881903 CGACTTGCTGAGGAGGCTGA 61.882 60.000 0.00 0.00 0.00 4.26
2759 3061 2.029844 GAGGCTGAAGTCACGCACC 61.030 63.158 0.00 0.00 0.00 5.01
2760 3062 3.414700 GGCTGAAGTCACGCACCG 61.415 66.667 5.51 0.00 0.00 4.94
2764 3066 4.681978 GAAGTCACGCACCGGCCT 62.682 66.667 0.00 0.00 36.38 5.19
2767 3069 4.681978 GTCACGCACCGGCCTTCT 62.682 66.667 0.00 0.00 36.38 2.85
2768 3070 4.680237 TCACGCACCGGCCTTCTG 62.680 66.667 0.00 0.00 36.38 3.02
2769 3071 4.988598 CACGCACCGGCCTTCTGT 62.989 66.667 0.00 0.00 36.38 3.41
2773 3075 1.675641 GCACCGGCCTTCTGTCATT 60.676 57.895 0.00 0.00 0.00 2.57
2789 3091 4.608269 TGTCATTGCCAATTCCATCCTTA 58.392 39.130 0.00 0.00 0.00 2.69
2805 3107 2.700897 TCCTTAGTGCCATCTAGCTTCC 59.299 50.000 0.00 0.00 0.00 3.46
2808 3110 0.543749 AGTGCCATCTAGCTTCCACC 59.456 55.000 0.00 0.00 0.00 4.61
2817 3119 1.550524 CTAGCTTCCACCTGTGCTACA 59.449 52.381 0.00 0.00 37.02 2.74
2850 3152 3.299340 GAGCTAACTCTCGTTGGTGAA 57.701 47.619 0.00 0.00 40.03 3.18
2857 3264 2.158957 ACTCTCGTTGGTGAAAAGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
2859 3266 2.807967 TCTCGTTGGTGAAAAGCTCATG 59.192 45.455 0.00 0.00 36.14 3.07
2865 3272 2.095110 TGGTGAAAAGCTCATGCATTCG 60.095 45.455 0.00 0.00 42.74 3.34
2867 3274 1.135315 TGAAAAGCTCATGCATTCGGC 60.135 47.619 0.00 1.47 42.74 5.54
2871 3278 1.226773 GCTCATGCATTCGGCCAAC 60.227 57.895 2.24 0.00 43.89 3.77
2883 3290 3.175133 GGCCAACGATGACCTTGAT 57.825 52.632 0.00 0.00 0.00 2.57
2897 3304 4.081862 TGACCTTGATACTTAGGGTGTTCG 60.082 45.833 0.00 0.00 35.79 3.95
2899 3306 4.715297 ACCTTGATACTTAGGGTGTTCGAT 59.285 41.667 0.00 0.00 35.79 3.59
2907 3314 0.321653 AGGGTGTTCGATGACTTGCC 60.322 55.000 0.00 0.00 0.00 4.52
2936 3343 7.257722 AGGTATATTTGCCTCAAATTTGTTCG 58.742 34.615 17.47 7.62 40.60 3.95
2942 3349 7.778470 TTTGCCTCAAATTTGTTCGTATTTT 57.222 28.000 17.47 0.00 0.00 1.82
2956 3363 6.810182 TGTTCGTATTTTGTAGTCTAGCTTCC 59.190 38.462 0.00 0.00 0.00 3.46
2965 3372 7.719871 TTGTAGTCTAGCTTCCTGTAGATTT 57.280 36.000 0.00 0.00 0.00 2.17
2969 3376 4.568760 GTCTAGCTTCCTGTAGATTTGTGC 59.431 45.833 0.00 0.00 0.00 4.57
2993 3400 6.675026 CAGATGGCATATGATTCACGATTTT 58.325 36.000 16.87 0.00 0.00 1.82
3016 3424 1.980765 GGATGCCATCATGGTAGAGGA 59.019 52.381 5.31 0.00 40.46 3.71
3017 3425 2.027377 GGATGCCATCATGGTAGAGGAG 60.027 54.545 5.31 0.00 40.46 3.69
3022 3430 4.263905 TGCCATCATGGTAGAGGAGTTTTT 60.264 41.667 5.31 0.00 40.46 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.922364 TTTTGGGGAGGGTGGGGC 61.922 66.667 0.00 0.00 0.00 5.80
28 29 2.119611 GTTTTGGGGAGGGTGGGG 59.880 66.667 0.00 0.00 0.00 4.96
29 30 2.119611 GGTTTTGGGGAGGGTGGG 59.880 66.667 0.00 0.00 0.00 4.61
30 31 2.282887 CGGTTTTGGGGAGGGTGG 60.283 66.667 0.00 0.00 0.00 4.61
31 32 2.989253 GCGGTTTTGGGGAGGGTG 60.989 66.667 0.00 0.00 0.00 4.61
32 33 4.295199 GGCGGTTTTGGGGAGGGT 62.295 66.667 0.00 0.00 0.00 4.34
72 73 1.845205 CTAGAGGGATGGCCAGGGG 60.845 68.421 13.05 0.00 35.15 4.79
73 74 2.524204 GCTAGAGGGATGGCCAGGG 61.524 68.421 13.05 0.00 35.15 4.45
74 75 2.524204 GGCTAGAGGGATGGCCAGG 61.524 68.421 13.05 0.00 45.62 4.45
75 76 3.155750 GGCTAGAGGGATGGCCAG 58.844 66.667 13.05 0.00 45.62 4.85
77 78 3.253061 GGGGCTAGAGGGATGGCC 61.253 72.222 0.00 0.00 45.59 5.36
78 79 3.631046 CGGGGCTAGAGGGATGGC 61.631 72.222 0.00 0.00 0.00 4.40
79 80 3.631046 GCGGGGCTAGAGGGATGG 61.631 72.222 0.00 0.00 0.00 3.51
80 81 3.631046 GGCGGGGCTAGAGGGATG 61.631 72.222 0.00 0.00 0.00 3.51
81 82 3.851184 AGGCGGGGCTAGAGGGAT 61.851 66.667 0.00 0.00 0.00 3.85
82 83 4.860881 CAGGCGGGGCTAGAGGGA 62.861 72.222 0.00 0.00 0.00 4.20
94 95 2.551912 AAAAACCCAGACGCAGGCG 61.552 57.895 12.71 12.71 46.03 5.52
95 96 3.443588 AAAAACCCAGACGCAGGC 58.556 55.556 0.00 0.00 0.00 4.85
109 110 2.032426 GTGAAACTTCGCCGGAGAAAAA 59.968 45.455 21.43 0.00 0.00 1.94
110 111 1.600485 GTGAAACTTCGCCGGAGAAAA 59.400 47.619 21.43 0.28 0.00 2.29
111 112 1.223187 GTGAAACTTCGCCGGAGAAA 58.777 50.000 21.43 3.54 0.00 2.52
112 113 0.601841 GGTGAAACTTCGCCGGAGAA 60.602 55.000 19.99 19.99 46.63 2.87
113 114 1.005394 GGTGAAACTTCGCCGGAGA 60.005 57.895 5.05 3.81 46.63 3.71
114 115 3.562635 GGTGAAACTTCGCCGGAG 58.437 61.111 5.05 0.00 46.63 4.63
119 120 0.322546 AGGGGATGGTGAAACTTCGC 60.323 55.000 0.00 0.00 36.74 4.70
120 121 2.084546 GAAGGGGATGGTGAAACTTCG 58.915 52.381 0.00 0.00 36.74 3.79
121 122 2.041755 AGGAAGGGGATGGTGAAACTTC 59.958 50.000 0.00 0.00 36.74 3.01
122 123 2.073776 AGGAAGGGGATGGTGAAACTT 58.926 47.619 0.00 0.00 36.74 2.66
123 124 1.355720 CAGGAAGGGGATGGTGAAACT 59.644 52.381 0.00 0.00 36.74 2.66
124 125 1.839424 CAGGAAGGGGATGGTGAAAC 58.161 55.000 0.00 0.00 0.00 2.78
125 126 0.039618 GCAGGAAGGGGATGGTGAAA 59.960 55.000 0.00 0.00 0.00 2.69
126 127 1.691219 GCAGGAAGGGGATGGTGAA 59.309 57.895 0.00 0.00 0.00 3.18
127 128 2.308722 GGCAGGAAGGGGATGGTGA 61.309 63.158 0.00 0.00 0.00 4.02
128 129 2.276740 GGCAGGAAGGGGATGGTG 59.723 66.667 0.00 0.00 0.00 4.17
129 130 3.411517 CGGCAGGAAGGGGATGGT 61.412 66.667 0.00 0.00 0.00 3.55
130 131 4.883354 GCGGCAGGAAGGGGATGG 62.883 72.222 0.00 0.00 0.00 3.51
131 132 4.883354 GGCGGCAGGAAGGGGATG 62.883 72.222 3.07 0.00 0.00 3.51
137 138 4.785453 GTGGAGGGCGGCAGGAAG 62.785 72.222 12.47 0.00 0.00 3.46
147 148 2.501943 TTAGGGAAGGGGGTGGAGGG 62.502 65.000 0.00 0.00 0.00 4.30
148 149 0.988678 CTTAGGGAAGGGGGTGGAGG 60.989 65.000 0.00 0.00 0.00 4.30
149 150 0.044244 TCTTAGGGAAGGGGGTGGAG 59.956 60.000 0.00 0.00 33.09 3.86
150 151 0.728843 ATCTTAGGGAAGGGGGTGGA 59.271 55.000 0.00 0.00 33.09 4.02
151 152 2.090153 TCTATCTTAGGGAAGGGGGTGG 60.090 54.545 0.00 0.00 33.09 4.61
152 153 3.346146 TCTATCTTAGGGAAGGGGGTG 57.654 52.381 0.00 0.00 33.09 4.61
153 154 3.441658 CCATCTATCTTAGGGAAGGGGGT 60.442 52.174 0.00 0.00 33.09 4.95
154 155 3.185455 CCATCTATCTTAGGGAAGGGGG 58.815 54.545 0.00 0.00 33.09 5.40
155 156 3.584848 CACCATCTATCTTAGGGAAGGGG 59.415 52.174 0.00 0.00 33.09 4.79
156 157 3.584848 CCACCATCTATCTTAGGGAAGGG 59.415 52.174 0.00 0.00 33.09 3.95
157 158 3.584848 CCCACCATCTATCTTAGGGAAGG 59.415 52.174 0.00 0.00 36.96 3.46
158 159 3.584848 CCCCACCATCTATCTTAGGGAAG 59.415 52.174 0.00 0.00 36.96 3.46
159 160 3.050564 ACCCCACCATCTATCTTAGGGAA 60.051 47.826 0.00 0.00 36.96 3.97
160 161 2.527057 ACCCCACCATCTATCTTAGGGA 59.473 50.000 0.00 0.00 36.96 4.20
161 162 2.991580 ACCCCACCATCTATCTTAGGG 58.008 52.381 0.00 0.00 39.33 3.53
162 163 3.515901 GCTACCCCACCATCTATCTTAGG 59.484 52.174 0.00 0.00 0.00 2.69
163 164 3.515901 GGCTACCCCACCATCTATCTTAG 59.484 52.174 0.00 0.00 0.00 2.18
164 165 3.144125 AGGCTACCCCACCATCTATCTTA 59.856 47.826 0.00 0.00 35.39 2.10
165 166 2.089925 AGGCTACCCCACCATCTATCTT 60.090 50.000 0.00 0.00 35.39 2.40
166 167 1.509961 AGGCTACCCCACCATCTATCT 59.490 52.381 0.00 0.00 35.39 1.98
167 168 1.625818 CAGGCTACCCCACCATCTATC 59.374 57.143 0.00 0.00 35.39 2.08
168 169 1.061346 ACAGGCTACCCCACCATCTAT 60.061 52.381 0.00 0.00 35.39 1.98
169 170 0.341961 ACAGGCTACCCCACCATCTA 59.658 55.000 0.00 0.00 35.39 1.98
170 171 0.550147 AACAGGCTACCCCACCATCT 60.550 55.000 0.00 0.00 35.39 2.90
171 172 1.141053 CTAACAGGCTACCCCACCATC 59.859 57.143 0.00 0.00 35.39 3.51
172 173 1.213296 CTAACAGGCTACCCCACCAT 58.787 55.000 0.00 0.00 35.39 3.55
173 174 0.178885 ACTAACAGGCTACCCCACCA 60.179 55.000 0.00 0.00 35.39 4.17
174 175 0.252197 CACTAACAGGCTACCCCACC 59.748 60.000 0.00 0.00 35.39 4.61
175 176 1.207329 CTCACTAACAGGCTACCCCAC 59.793 57.143 0.00 0.00 35.39 4.61
176 177 1.568504 CTCACTAACAGGCTACCCCA 58.431 55.000 0.00 0.00 35.39 4.96
177 178 0.178301 GCTCACTAACAGGCTACCCC 59.822 60.000 0.00 0.00 0.00 4.95
178 179 1.137282 GAGCTCACTAACAGGCTACCC 59.863 57.143 9.40 0.00 35.01 3.69
179 180 1.137282 GGAGCTCACTAACAGGCTACC 59.863 57.143 17.19 0.00 35.01 3.18
180 181 2.104170 AGGAGCTCACTAACAGGCTAC 58.896 52.381 17.19 0.00 36.02 3.58
181 182 2.534042 AGGAGCTCACTAACAGGCTA 57.466 50.000 17.19 0.00 35.01 3.93
182 183 1.552792 GAAGGAGCTCACTAACAGGCT 59.447 52.381 17.19 0.00 37.77 4.58
183 184 1.552792 AGAAGGAGCTCACTAACAGGC 59.447 52.381 17.19 0.00 0.00 4.85
184 185 3.971245 AAGAAGGAGCTCACTAACAGG 57.029 47.619 17.19 0.00 0.00 4.00
185 186 5.146010 AGAAAGAAGGAGCTCACTAACAG 57.854 43.478 17.19 0.00 0.00 3.16
186 187 5.775701 AGTAGAAAGAAGGAGCTCACTAACA 59.224 40.000 17.19 0.00 0.00 2.41
187 188 6.275494 AGTAGAAAGAAGGAGCTCACTAAC 57.725 41.667 17.19 8.26 0.00 2.34
188 189 6.071278 GGAAGTAGAAAGAAGGAGCTCACTAA 60.071 42.308 17.19 0.00 0.00 2.24
189 190 5.419471 GGAAGTAGAAAGAAGGAGCTCACTA 59.581 44.000 17.19 4.42 0.00 2.74
190 191 4.221924 GGAAGTAGAAAGAAGGAGCTCACT 59.778 45.833 17.19 7.49 0.00 3.41
191 192 4.221924 AGGAAGTAGAAAGAAGGAGCTCAC 59.778 45.833 17.19 5.01 0.00 3.51
192 193 4.421131 AGGAAGTAGAAAGAAGGAGCTCA 58.579 43.478 17.19 0.00 0.00 4.26
193 194 4.142026 GGAGGAAGTAGAAAGAAGGAGCTC 60.142 50.000 4.71 4.71 0.00 4.09
194 195 3.772572 GGAGGAAGTAGAAAGAAGGAGCT 59.227 47.826 0.00 0.00 0.00 4.09
195 196 3.118555 GGGAGGAAGTAGAAAGAAGGAGC 60.119 52.174 0.00 0.00 0.00 4.70
196 197 3.452990 GGGGAGGAAGTAGAAAGAAGGAG 59.547 52.174 0.00 0.00 0.00 3.69
197 198 3.079226 AGGGGAGGAAGTAGAAAGAAGGA 59.921 47.826 0.00 0.00 0.00 3.36
198 199 3.452990 GAGGGGAGGAAGTAGAAAGAAGG 59.547 52.174 0.00 0.00 0.00 3.46
199 200 4.161377 CAGAGGGGAGGAAGTAGAAAGAAG 59.839 50.000 0.00 0.00 0.00 2.85
200 201 4.097418 CAGAGGGGAGGAAGTAGAAAGAA 58.903 47.826 0.00 0.00 0.00 2.52
201 202 3.566775 CCAGAGGGGAGGAAGTAGAAAGA 60.567 52.174 0.00 0.00 40.01 2.52
202 203 2.769095 CCAGAGGGGAGGAAGTAGAAAG 59.231 54.545 0.00 0.00 40.01 2.62
203 204 2.834113 CCAGAGGGGAGGAAGTAGAAA 58.166 52.381 0.00 0.00 40.01 2.52
204 205 1.622725 GCCAGAGGGGAGGAAGTAGAA 60.623 57.143 0.00 0.00 40.01 2.10
205 206 0.032017 GCCAGAGGGGAGGAAGTAGA 60.032 60.000 0.00 0.00 40.01 2.59
206 207 1.051556 GGCCAGAGGGGAGGAAGTAG 61.052 65.000 0.00 0.00 40.01 2.57
207 208 1.003051 GGCCAGAGGGGAGGAAGTA 59.997 63.158 0.00 0.00 40.01 2.24
208 209 2.285743 GGCCAGAGGGGAGGAAGT 60.286 66.667 0.00 0.00 40.01 3.01
209 210 2.041928 AGGCCAGAGGGGAGGAAG 59.958 66.667 5.01 0.00 40.01 3.46
210 211 2.041265 GAGGCCAGAGGGGAGGAA 59.959 66.667 5.01 0.00 40.01 3.36
211 212 4.095400 GGAGGCCAGAGGGGAGGA 62.095 72.222 5.01 0.00 40.01 3.71
213 214 4.101077 AGGGAGGCCAGAGGGGAG 62.101 72.222 5.01 0.00 40.01 4.30
214 215 4.095400 GAGGGAGGCCAGAGGGGA 62.095 72.222 5.01 0.00 40.01 4.81
216 217 4.421554 TGGAGGGAGGCCAGAGGG 62.422 72.222 5.01 0.00 37.18 4.30
222 223 4.475135 GTTCGCTGGAGGGAGGCC 62.475 72.222 0.00 0.00 38.26 5.19
223 224 2.860972 GAAGTTCGCTGGAGGGAGGC 62.861 65.000 0.00 0.00 38.26 4.70
224 225 1.219393 GAAGTTCGCTGGAGGGAGG 59.781 63.158 0.00 0.00 38.26 4.30
225 226 0.610687 AAGAAGTTCGCTGGAGGGAG 59.389 55.000 0.00 0.00 38.26 4.30
226 227 0.608640 GAAGAAGTTCGCTGGAGGGA 59.391 55.000 0.00 0.00 35.07 4.20
227 228 3.145228 GAAGAAGTTCGCTGGAGGG 57.855 57.895 0.00 0.00 0.00 4.30
236 237 2.386661 TGAGATGGCCGAAGAAGTTC 57.613 50.000 0.00 0.00 0.00 3.01
237 238 2.859165 TTGAGATGGCCGAAGAAGTT 57.141 45.000 0.00 0.00 0.00 2.66
238 239 2.859165 TTTGAGATGGCCGAAGAAGT 57.141 45.000 0.00 0.00 0.00 3.01
239 240 3.242543 CGATTTTGAGATGGCCGAAGAAG 60.243 47.826 0.00 0.00 0.00 2.85
240 241 2.677836 CGATTTTGAGATGGCCGAAGAA 59.322 45.455 0.00 0.00 0.00 2.52
241 242 2.093711 TCGATTTTGAGATGGCCGAAGA 60.094 45.455 0.00 0.00 0.00 2.87
242 243 2.030946 GTCGATTTTGAGATGGCCGAAG 59.969 50.000 0.00 0.00 0.00 3.79
243 244 2.006888 GTCGATTTTGAGATGGCCGAA 58.993 47.619 0.00 0.00 0.00 4.30
244 245 1.207089 AGTCGATTTTGAGATGGCCGA 59.793 47.619 0.00 0.00 0.00 5.54
245 246 1.656652 AGTCGATTTTGAGATGGCCG 58.343 50.000 0.00 0.00 0.00 6.13
246 247 3.274288 AGAAGTCGATTTTGAGATGGCC 58.726 45.455 0.00 0.00 0.00 5.36
247 248 4.528531 GAGAAGTCGATTTTGAGATGGC 57.471 45.455 0.00 0.00 0.00 4.40
258 259 7.760340 ACTAATTTTAGCTTTCGAGAAGTCGAT 59.240 33.333 0.00 0.00 43.28 3.59
259 260 7.088905 ACTAATTTTAGCTTTCGAGAAGTCGA 58.911 34.615 0.00 0.00 42.70 4.20
260 261 7.279470 ACTAATTTTAGCTTTCGAGAAGTCG 57.721 36.000 0.00 0.00 39.76 4.18
261 262 7.272948 TCGACTAATTTTAGCTTTCGAGAAGTC 59.727 37.037 0.00 0.00 33.63 3.01
262 263 7.062022 GTCGACTAATTTTAGCTTTCGAGAAGT 59.938 37.037 8.70 0.00 36.86 3.01
263 264 7.273815 AGTCGACTAATTTTAGCTTTCGAGAAG 59.726 37.037 18.46 3.79 36.86 2.85
264 265 7.061905 CAGTCGACTAATTTTAGCTTTCGAGAA 59.938 37.037 19.57 0.00 36.86 2.87
265 266 6.527023 CAGTCGACTAATTTTAGCTTTCGAGA 59.473 38.462 19.57 0.00 36.86 4.04
266 267 6.527023 TCAGTCGACTAATTTTAGCTTTCGAG 59.473 38.462 19.57 0.00 36.86 4.04
267 268 6.307318 GTCAGTCGACTAATTTTAGCTTTCGA 59.693 38.462 19.57 2.95 39.22 3.71
268 269 6.089016 TGTCAGTCGACTAATTTTAGCTTTCG 59.911 38.462 19.57 0.26 43.06 3.46
269 270 7.347508 TGTCAGTCGACTAATTTTAGCTTTC 57.652 36.000 19.57 0.00 43.06 2.62
270 271 7.907214 ATGTCAGTCGACTAATTTTAGCTTT 57.093 32.000 19.57 0.00 43.06 3.51
271 272 7.907214 AATGTCAGTCGACTAATTTTAGCTT 57.093 32.000 19.57 0.07 43.06 3.74
272 273 7.907214 AAATGTCAGTCGACTAATTTTAGCT 57.093 32.000 19.57 0.00 43.06 3.32
273 274 7.846592 GCTAAATGTCAGTCGACTAATTTTAGC 59.153 37.037 31.63 31.63 41.99 3.09
274 275 9.088512 AGCTAAATGTCAGTCGACTAATTTTAG 57.911 33.333 25.55 25.78 43.06 1.85
275 276 8.997621 AGCTAAATGTCAGTCGACTAATTTTA 57.002 30.769 25.55 20.41 43.06 1.52
276 277 7.907214 AGCTAAATGTCAGTCGACTAATTTT 57.093 32.000 25.55 20.40 43.06 1.82
277 278 8.997621 TTAGCTAAATGTCAGTCGACTAATTT 57.002 30.769 24.56 24.56 43.06 1.82
278 279 9.035607 CATTAGCTAAATGTCAGTCGACTAATT 57.964 33.333 19.57 15.02 43.06 1.40
279 280 8.581057 CATTAGCTAAATGTCAGTCGACTAAT 57.419 34.615 19.57 9.65 43.06 1.73
280 281 7.987268 CATTAGCTAAATGTCAGTCGACTAA 57.013 36.000 19.57 0.00 43.06 2.24
303 304 8.682710 GGCAGTAATACATTTTTATTCTCCACA 58.317 33.333 0.00 0.00 0.00 4.17
304 305 7.855904 CGGCAGTAATACATTTTTATTCTCCAC 59.144 37.037 0.00 0.00 0.00 4.02
305 306 7.771361 TCGGCAGTAATACATTTTTATTCTCCA 59.229 33.333 0.00 0.00 0.00 3.86
306 307 8.149973 TCGGCAGTAATACATTTTTATTCTCC 57.850 34.615 0.00 0.00 0.00 3.71
307 308 9.651718 CTTCGGCAGTAATACATTTTTATTCTC 57.348 33.333 0.00 0.00 0.00 2.87
308 309 9.391006 TCTTCGGCAGTAATACATTTTTATTCT 57.609 29.630 0.00 0.00 0.00 2.40
309 310 9.434559 GTCTTCGGCAGTAATACATTTTTATTC 57.565 33.333 0.00 0.00 0.00 1.75
310 311 9.174166 AGTCTTCGGCAGTAATACATTTTTATT 57.826 29.630 0.00 0.00 0.00 1.40
311 312 8.732746 AGTCTTCGGCAGTAATACATTTTTAT 57.267 30.769 0.00 0.00 0.00 1.40
312 313 8.556213 AAGTCTTCGGCAGTAATACATTTTTA 57.444 30.769 0.00 0.00 0.00 1.52
313 314 7.448748 AAGTCTTCGGCAGTAATACATTTTT 57.551 32.000 0.00 0.00 0.00 1.94
314 315 7.073342 GAAGTCTTCGGCAGTAATACATTTT 57.927 36.000 0.00 0.00 0.00 1.82
315 316 6.663944 GAAGTCTTCGGCAGTAATACATTT 57.336 37.500 0.00 0.00 0.00 2.32
330 331 2.506438 CCGACGGGCGAAGTCTTC 60.506 66.667 3.94 2.18 44.57 2.87
385 386 9.534565 GAAAATACATCTGATAACTAGACAGCA 57.465 33.333 0.00 0.00 0.00 4.41
438 439 1.681780 TTGCCATAAAGGGAAGGCTCG 60.682 52.381 0.00 0.00 43.52 5.03
502 504 4.088648 CGTACTAAACGTTAATCCGTCGT 58.911 43.478 0.00 0.00 46.72 4.34
543 558 2.159841 CGATGTTTGGAACACTACTGCG 60.160 50.000 0.00 0.00 45.50 5.18
547 562 2.063266 TCGCGATGTTTGGAACACTAC 58.937 47.619 3.71 0.00 45.50 2.73
596 615 2.046892 AAGGCTGCTGCACGTAGG 60.047 61.111 17.89 0.00 41.91 3.18
603 639 2.558313 GTTGACGAAGGCTGCTGC 59.442 61.111 7.10 7.10 38.76 5.25
668 715 7.490962 TGGTCAGTAAACACATCTTAACAAG 57.509 36.000 0.00 0.00 0.00 3.16
790 855 4.262617 GCCTATTAAGGTGGGCTATTAGC 58.737 47.826 7.16 7.16 45.64 3.09
833 898 1.430992 TCCCGGGAAGACTCAAAAGT 58.569 50.000 24.50 0.00 38.88 2.66
834 899 2.359900 CATCCCGGGAAGACTCAAAAG 58.640 52.381 30.84 3.47 0.00 2.27
835 900 1.004277 CCATCCCGGGAAGACTCAAAA 59.996 52.381 30.84 0.00 0.00 2.44
836 901 0.618458 CCATCCCGGGAAGACTCAAA 59.382 55.000 30.84 0.00 0.00 2.69
838 903 2.367202 GCCATCCCGGGAAGACTCA 61.367 63.158 30.84 1.65 34.06 3.41
839 904 1.910580 TTGCCATCCCGGGAAGACTC 61.911 60.000 30.84 15.62 40.79 3.36
849 914 2.057137 TGATAGCTTGTTGCCATCCC 57.943 50.000 0.00 0.00 44.23 3.85
850 915 3.019564 AGTTGATAGCTTGTTGCCATCC 58.980 45.455 0.00 0.00 44.23 3.51
853 918 2.436417 GGAGTTGATAGCTTGTTGCCA 58.564 47.619 0.00 0.00 44.23 4.92
902 969 7.103641 TCCATCTAACTGGTCTTGTTCATTAC 58.896 38.462 0.00 0.00 37.57 1.89
937 1004 9.840427 CGTCCTTGAATTGAAAATTGTAACTAT 57.160 29.630 0.00 0.00 0.00 2.12
938 1005 7.806014 GCGTCCTTGAATTGAAAATTGTAACTA 59.194 33.333 0.00 0.00 0.00 2.24
939 1006 6.640907 GCGTCCTTGAATTGAAAATTGTAACT 59.359 34.615 0.00 0.00 0.00 2.24
971 1086 1.067071 AGCCCTGCACTTACGAGTTAC 60.067 52.381 0.00 0.00 32.54 2.50
972 1087 1.203994 GAGCCCTGCACTTACGAGTTA 59.796 52.381 0.00 0.00 32.54 2.24
973 1088 0.037232 GAGCCCTGCACTTACGAGTT 60.037 55.000 0.00 0.00 32.54 3.01
974 1089 1.592223 GAGCCCTGCACTTACGAGT 59.408 57.895 0.00 0.00 36.25 4.18
975 1090 1.517257 CGAGCCCTGCACTTACGAG 60.517 63.158 0.00 0.00 0.00 4.18
976 1091 2.571757 CGAGCCCTGCACTTACGA 59.428 61.111 0.00 0.00 0.00 3.43
977 1092 3.188786 GCGAGCCCTGCACTTACG 61.189 66.667 0.00 0.00 0.00 3.18
999 1115 6.127535 ACCGTCCGAGAATTCTCTTAAATACA 60.128 38.462 28.28 5.06 40.75 2.29
1023 1145 1.060122 CGTTCAATCTCGGCGGTTAAC 59.940 52.381 7.21 0.00 0.00 2.01
1030 1152 2.476185 CCATTGTTCGTTCAATCTCGGC 60.476 50.000 5.24 0.00 36.10 5.54
1035 1166 2.505866 GACGCCATTGTTCGTTCAATC 58.494 47.619 3.33 0.00 39.22 2.67
1051 1182 1.439353 AACATCCATGCCATCGACGC 61.439 55.000 0.00 0.00 0.00 5.19
1213 1356 1.361668 GGCGTCATGTCGTTGCAGAT 61.362 55.000 13.66 0.00 0.00 2.90
1222 1368 0.997196 GGTAGAAACGGCGTCATGTC 59.003 55.000 15.17 8.93 0.00 3.06
1249 1413 3.047877 CACGGGCTCGGTGGAAAC 61.048 66.667 12.42 0.00 41.39 2.78
1368 1571 2.125512 ATCAGCCTGCCGTCGAAC 60.126 61.111 0.00 0.00 0.00 3.95
1385 1588 2.594303 CGCCCAGCTTGTTCACCA 60.594 61.111 0.00 0.00 0.00 4.17
1389 1592 1.574702 GGTACACGCCCAGCTTGTTC 61.575 60.000 3.96 0.00 37.78 3.18
1424 1627 1.548269 CCAGGAGAAAGAGCTCGTTCT 59.452 52.381 35.31 35.31 45.02 3.01
1438 1641 2.674380 GGTGTTGCAGCCCAGGAG 60.674 66.667 0.00 0.00 0.00 3.69
1475 1678 1.371558 GCGTTCTGGACCTTGGACT 59.628 57.895 0.00 0.00 0.00 3.85
1522 1735 1.744368 CTGTGCTGCAGTAGGCCAG 60.744 63.158 16.64 10.84 43.89 4.85
1561 1774 1.815421 ATCCGATGTTGCCGCACTC 60.815 57.895 0.00 0.00 0.00 3.51
1571 1784 2.512286 CGTGGCAGCATCCGATGT 60.512 61.111 10.10 0.00 0.00 3.06
1623 1839 0.598065 GACGCCATTTGCTGAACCTT 59.402 50.000 0.00 0.00 38.05 3.50
1657 1876 3.431725 GTAGTTGCAGGTGGGCGC 61.432 66.667 0.00 0.00 36.28 6.53
1661 1880 1.298859 GAAGGCGTAGTTGCAGGTGG 61.299 60.000 0.00 0.00 36.28 4.61
1663 1882 0.324943 ATGAAGGCGTAGTTGCAGGT 59.675 50.000 0.00 0.00 36.28 4.00
1695 1914 0.604511 CGGCCCGGAAGTTGTAGTTT 60.605 55.000 0.73 0.00 0.00 2.66
1696 1915 1.004200 CGGCCCGGAAGTTGTAGTT 60.004 57.895 0.73 0.00 0.00 2.24
1709 1928 3.798954 CTCTTCAGATCGGCGGCCC 62.799 68.421 14.55 0.00 0.00 5.80
1740 1959 4.473520 CATCGCTTGGCCGGGTCT 62.474 66.667 2.18 0.00 0.00 3.85
1804 2026 4.335647 CTCGGGGCACAACAGGCT 62.336 66.667 0.00 0.00 0.00 4.58
1826 2048 1.883084 GCGTATCCTGGCGTCTTGG 60.883 63.158 0.00 0.00 0.00 3.61
1871 2093 2.093553 CCCATCGCATTGGTGGAATTTT 60.094 45.455 0.00 0.00 34.94 1.82
1872 2094 1.481772 CCCATCGCATTGGTGGAATTT 59.518 47.619 0.00 0.00 34.94 1.82
1886 2108 3.127548 GCATTTGCAGATATACCCCATCG 59.872 47.826 0.00 0.00 41.59 3.84
1910 2132 1.095807 GTTGCCCTCGTAGCCATTCC 61.096 60.000 0.00 0.00 0.00 3.01
1914 2136 3.712907 GGGTTGCCCTCGTAGCCA 61.713 66.667 0.00 0.00 41.34 4.75
1935 2157 1.802960 CCTGTGCATCCATCGATAAGC 59.197 52.381 0.00 0.41 0.00 3.09
1973 2195 2.916640 AGCTACGTCACTAGGGAGTAC 58.083 52.381 0.00 0.00 33.32 2.73
1974 2196 4.970860 ATAGCTACGTCACTAGGGAGTA 57.029 45.455 0.00 0.00 33.32 2.59
1975 2197 3.860968 ATAGCTACGTCACTAGGGAGT 57.139 47.619 0.00 0.00 35.80 3.85
1979 2210 6.144175 GCTTTTCTATAGCTACGTCACTAGG 58.856 44.000 0.00 0.00 35.74 3.02
1986 2217 5.531122 TCATGGCTTTTCTATAGCTACGT 57.469 39.130 0.00 0.00 38.67 3.57
1996 2227 2.905415 TGGACCATCATGGCTTTTCT 57.095 45.000 2.52 0.00 42.67 2.52
2084 2355 4.082787 GGTGAAAATCAGGAATTTCTCGCA 60.083 41.667 10.26 0.00 36.54 5.10
2088 2359 4.662278 TCGGGTGAAAATCAGGAATTTCT 58.338 39.130 10.26 0.00 36.54 2.52
2124 2407 5.405935 AAGACAAAAACTTCAAACTGGCT 57.594 34.783 0.00 0.00 0.00 4.75
2143 2426 7.227910 GGTACATTGTGGAGTGACTTTTTAAGA 59.772 37.037 0.00 0.00 0.00 2.10
2159 2442 4.885325 GGGTTGGTTATAGGGTACATTGTG 59.115 45.833 0.00 0.00 0.00 3.33
2162 2445 5.294473 AGAGGGTTGGTTATAGGGTACATT 58.706 41.667 0.00 0.00 0.00 2.71
2164 2447 4.357313 AGAGGGTTGGTTATAGGGTACA 57.643 45.455 0.00 0.00 0.00 2.90
2167 2450 3.810623 TGAAGAGGGTTGGTTATAGGGT 58.189 45.455 0.00 0.00 0.00 4.34
2172 2455 6.327386 ACATGTATGAAGAGGGTTGGTTAT 57.673 37.500 0.00 0.00 0.00 1.89
2208 2491 5.536161 AGTCTGTTTGTGGATTTTGCAGTAT 59.464 36.000 0.00 0.00 0.00 2.12
2210 2493 3.701040 AGTCTGTTTGTGGATTTTGCAGT 59.299 39.130 0.00 0.00 0.00 4.40
2219 2502 6.774673 TCCAAATACATAGTCTGTTTGTGGA 58.225 36.000 6.84 6.84 45.61 4.02
2221 2504 8.099364 ACTTCCAAATACATAGTCTGTTTGTG 57.901 34.615 0.00 0.00 39.39 3.33
2225 2508 7.174946 CACCAACTTCCAAATACATAGTCTGTT 59.825 37.037 0.00 0.00 39.39 3.16
2227 2510 6.094048 CCACCAACTTCCAAATACATAGTCTG 59.906 42.308 0.00 0.00 0.00 3.51
2233 2516 5.014123 TCTCTCCACCAACTTCCAAATACAT 59.986 40.000 0.00 0.00 0.00 2.29
2234 2517 4.349636 TCTCTCCACCAACTTCCAAATACA 59.650 41.667 0.00 0.00 0.00 2.29
2244 2527 7.245292 AGAGCTATATAATCTCTCCACCAACT 58.755 38.462 7.88 0.00 32.11 3.16
2263 2546 6.464892 CCAACCAATATGGATGAAGAGAGCTA 60.465 42.308 8.09 0.00 42.23 3.32
2276 2559 3.902218 AGATGTCCACCAACCAATATGG 58.098 45.455 0.00 0.00 45.02 2.74
2306 2589 8.540507 AAGCTCTATATTCTCTCCAACAACTA 57.459 34.615 0.00 0.00 0.00 2.24
2312 2601 8.311395 TGAAGAAAGCTCTATATTCTCTCCAA 57.689 34.615 0.00 0.00 32.45 3.53
2326 2615 8.502387 GTGTCAATATATGGATGAAGAAAGCTC 58.498 37.037 0.00 0.00 0.00 4.09
2328 2617 7.308830 GGGTGTCAATATATGGATGAAGAAAGC 60.309 40.741 0.00 0.00 0.00 3.51
2331 2620 6.230472 CGGGTGTCAATATATGGATGAAGAA 58.770 40.000 0.00 0.00 0.00 2.52
2357 2646 3.374058 CCACCTAAGTTATGCTTGGTTCG 59.626 47.826 0.00 0.00 36.87 3.95
2362 2651 4.331968 TCCAACCACCTAAGTTATGCTTG 58.668 43.478 0.00 0.00 38.05 4.01
2370 2659 4.827284 CACAAAGAATCCAACCACCTAAGT 59.173 41.667 0.00 0.00 0.00 2.24
2382 2671 3.119352 GCTGATTCCACCACAAAGAATCC 60.119 47.826 8.93 0.00 43.36 3.01
2404 2697 2.416432 GGACTCGAACTCGGGAGGG 61.416 68.421 5.89 0.00 43.86 4.30
2407 2700 0.107312 CCTAGGACTCGAACTCGGGA 60.107 60.000 1.05 0.00 43.86 5.14
2412 2705 1.275573 GCCAAACCTAGGACTCGAACT 59.724 52.381 17.98 0.00 0.00 3.01
2413 2706 1.001633 TGCCAAACCTAGGACTCGAAC 59.998 52.381 17.98 0.00 0.00 3.95
2417 2710 2.237392 ACTCATGCCAAACCTAGGACTC 59.763 50.000 17.98 0.08 0.00 3.36
2419 2712 2.359900 CACTCATGCCAAACCTAGGAC 58.640 52.381 17.98 0.00 0.00 3.85
2434 2727 3.860641 TCAGAAAATATGCGAGCACTCA 58.139 40.909 0.00 0.00 0.00 3.41
2436 2729 5.824904 AATTCAGAAAATATGCGAGCACT 57.175 34.783 0.00 0.00 0.00 4.40
2455 2748 8.682936 ATAGCATCGAAGAACCTGAATAAATT 57.317 30.769 0.00 0.00 43.58 1.82
2461 2754 9.261180 CTATTAAATAGCATCGAAGAACCTGAA 57.739 33.333 0.00 0.00 43.58 3.02
2475 2770 6.150976 GGCATGCCATACACTATTAAATAGCA 59.849 38.462 32.08 0.00 34.63 3.49
2482 2777 2.635427 TCGGGCATGCCATACACTATTA 59.365 45.455 36.56 7.25 37.98 0.98
2483 2778 1.419762 TCGGGCATGCCATACACTATT 59.580 47.619 36.56 0.00 37.98 1.73
2484 2779 1.055849 TCGGGCATGCCATACACTAT 58.944 50.000 36.56 0.00 37.98 2.12
2486 2781 1.153168 GTCGGGCATGCCATACACT 60.153 57.895 36.56 0.00 37.98 3.55
2487 2782 1.029408 TTGTCGGGCATGCCATACAC 61.029 55.000 36.56 24.94 37.98 2.90
2488 2783 1.029408 GTTGTCGGGCATGCCATACA 61.029 55.000 36.56 32.57 37.98 2.29
2501 2798 4.112634 CCACATACCACTCATAGTTGTCG 58.887 47.826 0.00 0.00 0.00 4.35
2502 2799 5.127194 TCTCCACATACCACTCATAGTTGTC 59.873 44.000 0.00 0.00 0.00 3.18
2503 2800 5.023452 TCTCCACATACCACTCATAGTTGT 58.977 41.667 0.00 0.00 0.00 3.32
2514 2811 6.183361 CCTGAAATATTCCTCTCCACATACCA 60.183 42.308 0.00 0.00 0.00 3.25
2515 2812 6.043243 TCCTGAAATATTCCTCTCCACATACC 59.957 42.308 0.00 0.00 0.00 2.73
2516 2813 6.931840 GTCCTGAAATATTCCTCTCCACATAC 59.068 42.308 0.00 0.00 0.00 2.39
2521 2818 4.635473 AGGTCCTGAAATATTCCTCTCCA 58.365 43.478 0.00 0.00 0.00 3.86
2522 2819 5.638530 AAGGTCCTGAAATATTCCTCTCC 57.361 43.478 0.00 0.00 0.00 3.71
2531 2828 6.065374 TGTGTAAGCAAAAGGTCCTGAAATA 58.935 36.000 0.00 0.00 0.00 1.40
2543 2840 2.225491 GACGCCAGATGTGTAAGCAAAA 59.775 45.455 0.00 0.00 37.96 2.44
2551 2848 0.102481 GATACGGACGCCAGATGTGT 59.898 55.000 0.00 0.00 41.39 3.72
2555 2852 1.412710 ACATTGATACGGACGCCAGAT 59.587 47.619 0.00 0.00 0.00 2.90
2557 2854 1.327460 CAACATTGATACGGACGCCAG 59.673 52.381 0.00 0.00 0.00 4.85
2560 2857 1.365699 ACCAACATTGATACGGACGC 58.634 50.000 0.00 0.00 0.00 5.19
2562 2859 3.078837 ACCAACCAACATTGATACGGAC 58.921 45.455 0.00 0.00 0.00 4.79
2564 2861 3.064820 GCTACCAACCAACATTGATACGG 59.935 47.826 0.00 0.00 0.00 4.02
2566 2863 4.700213 AGTGCTACCAACCAACATTGATAC 59.300 41.667 0.00 0.00 0.00 2.24
2570 2867 2.884012 TGAGTGCTACCAACCAACATTG 59.116 45.455 0.00 0.00 0.00 2.82
2576 2873 2.534038 TGGTGAGTGCTACCAACCA 58.466 52.632 0.00 0.00 44.79 3.67
2583 2880 1.906333 TCAGCGGTGGTGAGTGCTA 60.906 57.895 15.67 0.00 35.04 3.49
2584 2881 3.233980 TCAGCGGTGGTGAGTGCT 61.234 61.111 15.67 0.00 35.04 4.40
2610 2907 3.634397 CCATGTTGTGTGGTAGGATCT 57.366 47.619 0.00 0.00 31.96 2.75
2631 2928 3.842925 GAAGCTCACACGGGGGCAA 62.843 63.158 0.00 0.00 0.00 4.52
2674 2971 1.886313 CGAGCTCTTGATGCGGCAT 60.886 57.895 16.65 16.65 35.28 4.40
2675 2972 2.302199 ATCGAGCTCTTGATGCGGCA 62.302 55.000 12.85 4.58 32.65 5.69
2676 2973 1.593750 ATCGAGCTCTTGATGCGGC 60.594 57.895 12.85 0.00 32.65 6.53
2682 2979 1.219124 GCCCACATCGAGCTCTTGA 59.781 57.895 12.85 2.64 0.00 3.02
2747 3049 4.681978 AGGCCGGTGCGTGACTTC 62.682 66.667 1.90 0.00 38.85 3.01
2748 3050 4.250305 AAGGCCGGTGCGTGACTT 62.250 61.111 1.90 0.00 38.85 3.01
2759 3061 3.190878 GGCAATGACAGAAGGCCG 58.809 61.111 0.00 0.00 34.56 6.13
2760 3062 1.188863 ATTGGCAATGACAGAAGGCC 58.811 50.000 12.82 0.00 44.82 5.19
2764 3066 3.448301 GGATGGAATTGGCAATGACAGAA 59.552 43.478 14.47 2.23 0.00 3.02
2767 3069 3.104519 AGGATGGAATTGGCAATGACA 57.895 42.857 14.47 15.57 0.00 3.58
2768 3070 4.646492 ACTAAGGATGGAATTGGCAATGAC 59.354 41.667 14.47 10.24 0.00 3.06
2769 3071 4.646040 CACTAAGGATGGAATTGGCAATGA 59.354 41.667 14.47 1.28 0.00 2.57
2773 3075 2.378038 GCACTAAGGATGGAATTGGCA 58.622 47.619 0.00 0.00 0.00 4.92
2789 3091 0.543749 GGTGGAAGCTAGATGGCACT 59.456 55.000 0.00 0.00 34.17 4.40
2805 3107 0.807667 GGCGAGATGTAGCACAGGTG 60.808 60.000 0.00 0.00 34.54 4.00
2808 3110 1.517361 TGGGCGAGATGTAGCACAG 59.483 57.895 0.00 0.00 42.46 3.66
2817 3119 3.733507 TAGCTCGGGTGGGCGAGAT 62.734 63.158 0.00 0.00 34.48 2.75
2842 3144 2.798976 TGCATGAGCTTTTCACCAAC 57.201 45.000 0.00 0.00 42.74 3.77
2844 3146 2.095110 CGAATGCATGAGCTTTTCACCA 60.095 45.455 0.00 0.00 42.74 4.17
2850 3152 0.966875 TGGCCGAATGCATGAGCTTT 60.967 50.000 0.00 0.00 43.89 3.51
2867 3274 5.050490 CCTAAGTATCAAGGTCATCGTTGG 58.950 45.833 0.00 0.00 39.15 3.77
2871 3278 4.099573 ACACCCTAAGTATCAAGGTCATCG 59.900 45.833 0.00 0.00 0.00 3.84
2878 3285 5.749109 GTCATCGAACACCCTAAGTATCAAG 59.251 44.000 0.00 0.00 0.00 3.02
2880 3287 4.954202 AGTCATCGAACACCCTAAGTATCA 59.046 41.667 0.00 0.00 0.00 2.15
2883 3290 4.619863 GCAAGTCATCGAACACCCTAAGTA 60.620 45.833 0.00 0.00 0.00 2.24
2897 3304 2.736670 ATACCTTGGGGCAAGTCATC 57.263 50.000 0.00 0.00 39.58 2.92
2899 3306 4.277476 CAAATATACCTTGGGGCAAGTCA 58.723 43.478 0.00 0.00 39.58 3.41
2907 3314 6.484364 AATTTGAGGCAAATATACCTTGGG 57.516 37.500 5.88 0.00 42.32 4.12
2936 3343 8.684520 TCTACAGGAAGCTAGACTACAAAATAC 58.315 37.037 0.00 0.00 0.00 1.89
2942 3349 6.663953 ACAAATCTACAGGAAGCTAGACTACA 59.336 38.462 0.00 0.00 0.00 2.74
2956 3363 3.687572 GCCATCTGCACAAATCTACAG 57.312 47.619 0.00 0.00 40.77 2.74
2969 3376 5.874895 AATCGTGAATCATATGCCATCTG 57.125 39.130 0.00 0.00 0.00 2.90
2993 3400 3.435457 CCTCTACCATGATGGCATCCAAA 60.435 47.826 23.92 6.74 42.67 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.