Multiple sequence alignment - TraesCS5D01G051300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G051300 chr5D 100.000 9861 0 0 1 9861 49156003 49146143 0.000000e+00 18210.0
1 TraesCS5D01G051300 chr5D 83.055 2455 332 47 4512 6928 370826630 370829038 0.000000e+00 2152.0
2 TraesCS5D01G051300 chr5D 82.331 2145 319 38 4706 6803 334890597 334892728 0.000000e+00 1807.0
3 TraesCS5D01G051300 chr5D 86.150 1509 186 16 4554 6050 370838457 370839954 0.000000e+00 1607.0
4 TraesCS5D01G051300 chr5D 81.231 975 137 32 7798 8742 370841908 370842866 0.000000e+00 745.0
5 TraesCS5D01G051300 chr5D 85.009 587 77 5 7055 7633 370841161 370841744 3.970000e-163 586.0
6 TraesCS5D01G051300 chr5D 89.325 459 48 1 7176 7633 370829169 370829627 8.590000e-160 575.0
7 TraesCS5D01G051300 chr5D 80.400 801 115 34 6113 6881 370839983 370840773 1.110000e-158 571.0
8 TraesCS5D01G051300 chr5D 77.311 595 99 25 687 1265 370819558 370820132 1.600000e-82 318.0
9 TraesCS5D01G051300 chr5D 84.490 245 33 3 1032 1272 370832436 370832679 4.600000e-58 237.0
10 TraesCS5D01G051300 chr5D 82.692 156 26 1 3827 3982 525306932 525306778 4.800000e-28 137.0
11 TraesCS5D01G051300 chr5B 95.885 6610 247 17 3260 9861 51862362 51855770 0.000000e+00 10676.0
12 TraesCS5D01G051300 chr5B 80.894 4386 618 141 4581 8799 440210822 440215154 0.000000e+00 3254.0
13 TraesCS5D01G051300 chr5B 96.688 1600 46 7 1658 3256 51864451 51862858 0.000000e+00 2654.0
14 TraesCS5D01G051300 chr5B 83.004 1824 263 34 4433 6234 440184798 440186596 0.000000e+00 1607.0
15 TraesCS5D01G051300 chr5B 88.345 858 68 13 39 892 51867895 51867066 0.000000e+00 1002.0
16 TraesCS5D01G051300 chr5B 91.853 491 21 5 914 1390 51865845 51865360 0.000000e+00 667.0
17 TraesCS5D01G051300 chr5B 86.466 532 67 3 7103 7633 440234840 440235367 6.640000e-161 579.0
18 TraesCS5D01G051300 chr5B 81.148 732 103 25 6113 6826 440228352 440229066 1.120000e-153 555.0
19 TraesCS5D01G051300 chr5B 85.253 495 72 1 7141 7634 440188203 440188697 8.840000e-140 508.0
20 TraesCS5D01G051300 chr5B 80.321 686 93 28 6228 6880 440186635 440187311 1.930000e-131 481.0
21 TraesCS5D01G051300 chr5B 85.577 416 51 7 7805 8217 440235563 440235972 2.550000e-115 427.0
22 TraesCS5D01G051300 chr5B 80.996 542 75 13 8217 8742 440236058 440236587 1.190000e-108 405.0
23 TraesCS5D01G051300 chr5B 81.592 402 68 5 8411 8807 391757417 391757817 2.660000e-85 327.0
24 TraesCS5D01G051300 chr5B 86.486 222 25 3 1055 1272 440201201 440201421 1.280000e-58 239.0
25 TraesCS5D01G051300 chr5B 85.185 216 30 1 1057 1272 440220933 440221146 4.640000e-53 220.0
26 TraesCS5D01G051300 chr5B 84.181 177 26 2 1403 1577 447783041 447783217 4.740000e-38 171.0
27 TraesCS5D01G051300 chr5B 91.892 74 6 0 1590 1663 338585396 338585469 4.870000e-18 104.0
28 TraesCS5D01G051300 chr5A 92.578 7357 436 56 2014 9320 38781802 38774506 0.000000e+00 10460.0
29 TraesCS5D01G051300 chr5A 82.977 2385 334 28 4443 6797 473417817 473420159 0.000000e+00 2089.0
30 TraesCS5D01G051300 chr5A 90.860 1302 71 21 105 1401 38783732 38782474 0.000000e+00 1701.0
31 TraesCS5D01G051300 chr5A 85.828 1510 188 19 4554 6050 473619771 473621267 0.000000e+00 1580.0
32 TraesCS5D01G051300 chr5A 81.923 957 129 31 7798 8728 473623419 473624357 0.000000e+00 769.0
33 TraesCS5D01G051300 chr5A 88.491 530 43 11 9335 9861 38763802 38763288 8.410000e-175 625.0
34 TraesCS5D01G051300 chr5A 85.009 587 77 5 7055 7633 473622650 473623233 3.970000e-163 586.0
35 TraesCS5D01G051300 chr5A 82.203 708 94 28 6113 6801 473621296 473621990 1.850000e-161 580.0
36 TraesCS5D01G051300 chr5A 89.107 459 48 2 7176 7633 473429172 473429629 4.000000e-158 569.0
37 TraesCS5D01G051300 chr5A 84.656 567 77 7 7057 7622 473459351 473459908 3.110000e-154 556.0
38 TraesCS5D01G051300 chr5A 91.160 362 16 10 1615 1973 38782357 38782009 2.490000e-130 477.0
39 TraesCS5D01G051300 chr5A 77.840 537 75 33 746 1265 473454544 473455053 9.690000e-75 292.0
40 TraesCS5D01G051300 chr5A 87.293 181 21 2 1399 1577 458995801 458995621 1.300000e-48 206.0
41 TraesCS5D01G051300 chr5A 84.211 209 33 0 1064 1272 473613619 473613827 4.670000e-48 204.0
42 TraesCS5D01G051300 chr5A 86.441 177 21 3 1403 1578 522099112 522098938 3.640000e-44 191.0
43 TraesCS5D01G051300 chr5A 86.628 172 22 1 1397 1567 48354010 48354181 1.310000e-43 189.0
44 TraesCS5D01G051300 chr5A 85.876 177 22 3 1403 1578 522094930 522094756 1.690000e-42 185.0
45 TraesCS5D01G051300 chr4D 87.097 186 19 5 1396 1577 337415285 337415101 1.300000e-48 206.0
46 TraesCS5D01G051300 chr4D 86.503 163 22 0 2391 2553 80538539 80538701 7.870000e-41 180.0
47 TraesCS5D01G051300 chr4A 90.541 148 14 0 2386 2533 599432751 599432604 7.810000e-46 196.0
48 TraesCS5D01G051300 chr4A 80.240 167 31 2 3816 3982 122255334 122255170 3.740000e-24 124.0
49 TraesCS5D01G051300 chr4A 90.411 73 7 0 1590 1662 568513723 568513795 8.150000e-16 97.1
50 TraesCS5D01G051300 chr7D 87.500 168 19 2 1403 1568 203023217 203023384 1.010000e-44 193.0
51 TraesCS5D01G051300 chr7D 86.420 81 9 2 1590 1669 631289742 631289663 4.910000e-13 87.9
52 TraesCS5D01G051300 chr7B 85.083 181 25 2 1398 1577 6127282 6127103 6.080000e-42 183.0
53 TraesCS5D01G051300 chr7B 97.500 40 1 0 4315 4354 118893000 118893039 1.780000e-07 69.4
54 TraesCS5D01G051300 chr7B 90.244 41 2 2 4315 4354 695081754 695081793 1.800000e-02 52.8
55 TraesCS5D01G051300 chr7B 94.286 35 0 1 4320 4354 727180432 727180464 1.800000e-02 52.8
56 TraesCS5D01G051300 chr7B 100.000 28 0 0 4327 4354 746312330 746312303 1.800000e-02 52.8
57 TraesCS5D01G051300 chr6D 85.882 170 22 2 1398 1566 107770211 107770043 7.870000e-41 180.0
58 TraesCS5D01G051300 chr6D 87.248 149 19 0 2385 2533 427222355 427222503 4.740000e-38 171.0
59 TraesCS5D01G051300 chr6D 84.768 151 20 3 9706 9855 437173105 437173253 2.220000e-31 148.0
60 TraesCS5D01G051300 chr6D 92.958 71 5 0 1590 1660 319698074 319698004 4.870000e-18 104.0
61 TraesCS5D01G051300 chr1A 86.486 148 18 2 2386 2533 580506950 580506805 2.850000e-35 161.0
62 TraesCS5D01G051300 chr1A 86.486 148 18 2 2386 2533 580522487 580522342 2.850000e-35 161.0
63 TraesCS5D01G051300 chr1A 86.861 137 15 3 2394 2529 57736179 57736045 6.170000e-32 150.0
64 TraesCS5D01G051300 chr1A 79.333 150 29 1 44 193 346442939 346442792 4.870000e-18 104.0
65 TraesCS5D01G051300 chr2A 85.621 153 21 1 2382 2533 2801831 2801679 1.030000e-34 159.0
66 TraesCS5D01G051300 chr2A 77.348 181 36 5 3827 4006 699979157 699978981 1.750000e-17 102.0
67 TraesCS5D01G051300 chr2A 100.000 28 0 0 4327 4354 4840796 4840823 1.800000e-02 52.8
68 TraesCS5D01G051300 chr6B 85.430 151 20 2 9706 9855 661459884 661460033 1.330000e-33 156.0
69 TraesCS5D01G051300 chr6B 81.875 160 21 7 9706 9861 661428935 661429090 2.890000e-25 128.0
70 TraesCS5D01G051300 chr2B 79.518 166 32 2 3829 3994 572790044 572789881 6.260000e-22 117.0
71 TraesCS5D01G051300 chr7A 79.747 158 29 3 3850 4006 117754831 117754986 2.910000e-20 111.0
72 TraesCS5D01G051300 chr4B 78.689 183 26 11 3827 4006 619761840 619761668 1.050000e-19 110.0
73 TraesCS5D01G051300 chr1B 77.966 177 38 1 3817 3993 432461719 432461894 1.050000e-19 110.0
74 TraesCS5D01G051300 chr1B 87.671 73 9 0 1590 1662 667751338 667751410 1.760000e-12 86.1
75 TraesCS5D01G051300 chrUn 100.000 28 0 0 4327 4354 47300970 47300943 1.800000e-02 52.8
76 TraesCS5D01G051300 chrUn 100.000 28 0 0 4327 4354 47303049 47303076 1.800000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G051300 chr5D 49146143 49156003 9860 True 18210.000000 18210 100.000000 1 9861 1 chr5D.!!$R1 9860
1 TraesCS5D01G051300 chr5D 334890597 334892728 2131 False 1807.000000 1807 82.331000 4706 6803 1 chr5D.!!$F1 2097
2 TraesCS5D01G051300 chr5D 370826630 370832679 6049 False 988.000000 2152 85.623333 1032 7633 3 chr5D.!!$F3 6601
3 TraesCS5D01G051300 chr5D 370838457 370842866 4409 False 877.250000 1607 83.197500 4554 8742 4 chr5D.!!$F4 4188
4 TraesCS5D01G051300 chr5D 370819558 370820132 574 False 318.000000 318 77.311000 687 1265 1 chr5D.!!$F2 578
5 TraesCS5D01G051300 chr5B 51855770 51867895 12125 True 3749.750000 10676 93.192750 39 9861 4 chr5B.!!$R1 9822
6 TraesCS5D01G051300 chr5B 440210822 440215154 4332 False 3254.000000 3254 80.894000 4581 8799 1 chr5B.!!$F4 4218
7 TraesCS5D01G051300 chr5B 440184798 440188697 3899 False 865.333333 1607 82.859333 4433 7634 3 chr5B.!!$F8 3201
8 TraesCS5D01G051300 chr5B 440228352 440229066 714 False 555.000000 555 81.148000 6113 6826 1 chr5B.!!$F6 713
9 TraesCS5D01G051300 chr5B 440234840 440236587 1747 False 470.333333 579 84.346333 7103 8742 3 chr5B.!!$F9 1639
10 TraesCS5D01G051300 chr5A 38774506 38783732 9226 True 4212.666667 10460 91.532667 105 9320 3 chr5A.!!$R5 9215
11 TraesCS5D01G051300 chr5A 473417817 473420159 2342 False 2089.000000 2089 82.977000 4443 6797 1 chr5A.!!$F2 2354
12 TraesCS5D01G051300 chr5A 473619771 473624357 4586 False 878.750000 1580 83.740750 4554 8728 4 chr5A.!!$F7 4174
13 TraesCS5D01G051300 chr5A 38763288 38763802 514 True 625.000000 625 88.491000 9335 9861 1 chr5A.!!$R1 526
14 TraesCS5D01G051300 chr5A 473459351 473459908 557 False 556.000000 556 84.656000 7057 7622 1 chr5A.!!$F5 565
15 TraesCS5D01G051300 chr5A 473454544 473455053 509 False 292.000000 292 77.840000 746 1265 1 chr5A.!!$F4 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 356 0.246635 CCCTTCAGGACGTGTACTGG 59.753 60.000 12.15 0.00 41.86 4.00 F
1076 2322 0.036590 GGCATTGCCCAAAACACCAT 59.963 50.000 17.28 0.00 44.06 3.55 F
1424 3543 0.042131 ATCTACAACCGGACCCCTCA 59.958 55.000 9.46 0.00 0.00 3.86 F
1540 3659 0.106719 CTGACCGGCAACCCCATATT 60.107 55.000 0.00 0.00 0.00 1.28 F
1543 3662 0.106719 ACCGGCAACCCCATATTCAG 60.107 55.000 0.00 0.00 0.00 3.02 F
1547 3666 0.396974 GCAACCCCATATTCAGCCCA 60.397 55.000 0.00 0.00 0.00 5.36 F
1882 4002 0.512952 GATGGCATCATCCGCGTTAC 59.487 55.000 22.23 0.00 42.92 2.50 F
3742 6530 1.187974 CTGGCATTTCTGATTGGGCA 58.812 50.000 0.00 0.00 0.00 5.36 F
4333 7122 1.665679 CTGTTCAACACTGCGACACTT 59.334 47.619 0.00 0.00 0.00 3.16 F
5052 7854 1.070601 CCATATCGCAGTGTCATCCCA 59.929 52.381 0.00 0.00 0.00 4.37 F
5850 8658 0.320421 TTAGAGTTGGTGTGCGCTCC 60.320 55.000 9.73 11.44 0.00 4.70 F
7158 11288 1.545136 TCGTGCATTGCATTGTTCCAT 59.455 42.857 15.49 0.00 41.91 3.41 F
8254 12768 3.126001 TCACAAACTAAGCCTGACAGG 57.874 47.619 17.83 17.83 38.80 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 3524 0.042131 TGAGGGGTCCGGTTGTAGAT 59.958 55.000 0.00 0.00 0.00 1.98 R
2038 4325 1.071699 AGTGTTGGCACCGATGTTAGT 59.928 47.619 0.00 0.00 46.35 2.24 R
3338 6124 3.146066 GGTGCATGTCTTTGTACAGGAA 58.854 45.455 0.00 0.00 33.05 3.36 R
3536 6322 7.629157 TGGTTCTAGATTGTTATGGATGTTGA 58.371 34.615 0.00 0.00 0.00 3.18 R
3626 6414 6.074409 CGTTGCACTTTTTCTATGAAAATGCA 60.074 34.615 20.54 20.54 39.00 3.96 R
3742 6530 9.003658 CAAGATACAAGTCAAAAGTATGAACCT 57.996 33.333 0.00 0.00 0.00 3.50 R
4042 6830 1.135315 CAACTCAGGCGGCGATTTG 59.865 57.895 12.98 14.90 0.00 2.32 R
4874 7676 0.109086 CGAGTCATCTGGTGTCGCTT 60.109 55.000 0.00 0.00 0.00 4.68 R
5260 8062 3.007182 CCAAGAACACCATTCATTGCCTT 59.993 43.478 0.00 0.00 0.00 4.35 R
6637 9571 0.527565 GGGACCATGCACATGTTCAC 59.472 55.000 0.00 2.82 37.11 3.18 R
7348 11482 3.766545 TCCATTCTTTTGGAGTTCCTGG 58.233 45.455 0.00 0.00 40.90 4.45 R
8859 13416 0.606604 CTACTGTGTGGTAGCCGGTT 59.393 55.000 1.90 0.00 33.80 4.44 R
9692 14266 1.194218 TTCTCATGGTCGGCTCATCA 58.806 50.000 0.00 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.189287 CGCTCTTGCAGTATTTTCACCTT 59.811 43.478 0.00 0.00 39.64 3.50
63 64 4.616835 GCTCTTGCAGTATTTTCACCTTGG 60.617 45.833 0.00 0.00 39.41 3.61
67 68 3.193267 TGCAGTATTTTCACCTTGGCATC 59.807 43.478 0.00 0.00 0.00 3.91
70 71 3.440173 AGTATTTTCACCTTGGCATCGTG 59.560 43.478 7.87 7.87 0.00 4.35
79 80 2.472816 CTTGGCATCGTGTTTGCTTTT 58.527 42.857 0.00 0.00 40.03 2.27
91 92 5.108065 CGTGTTTGCTTTTGATCGCAATTAA 60.108 36.000 6.58 0.00 44.60 1.40
99 100 8.128582 TGCTTTTGATCGCAATTAACTTATAGG 58.871 33.333 0.00 0.00 33.25 2.57
100 101 7.113544 GCTTTTGATCGCAATTAACTTATAGGC 59.886 37.037 0.00 0.00 33.25 3.93
132 133 9.757227 CTGATAAACCTCTATAAGAGTCAAAGG 57.243 37.037 3.42 0.00 40.72 3.11
159 160 8.037758 TCATTTTCTAAAGCTCTCTCTCGAATT 58.962 33.333 0.00 0.00 0.00 2.17
266 267 1.480954 GTCTTCGAGGGCATGGTCTTA 59.519 52.381 0.00 0.00 0.00 2.10
294 297 1.795170 GCACATGTTGGCGTGGAAGT 61.795 55.000 0.00 0.00 35.99 3.01
317 320 1.148867 TGGGCCCCTCTCAAATTCAAA 59.851 47.619 22.27 0.00 0.00 2.69
329 332 6.272318 TCTCAAATTCAAACTTTTCGCATGT 58.728 32.000 0.00 0.00 0.00 3.21
332 335 2.679355 TCAAACTTTTCGCATGTCCG 57.321 45.000 0.00 0.00 0.00 4.79
333 336 1.265635 TCAAACTTTTCGCATGTCCGG 59.734 47.619 0.00 0.00 0.00 5.14
336 339 3.051392 CTTTTCGCATGTCCGGCCC 62.051 63.158 0.00 0.00 0.00 5.80
337 340 3.561120 TTTTCGCATGTCCGGCCCT 62.561 57.895 0.00 0.00 0.00 5.19
338 341 3.561120 TTTCGCATGTCCGGCCCTT 62.561 57.895 0.00 0.00 0.00 3.95
339 342 3.969250 TTCGCATGTCCGGCCCTTC 62.969 63.158 0.00 0.00 0.00 3.46
340 343 4.776322 CGCATGTCCGGCCCTTCA 62.776 66.667 0.00 0.00 0.00 3.02
341 344 2.825836 GCATGTCCGGCCCTTCAG 60.826 66.667 0.00 0.00 0.00 3.02
342 345 2.124570 CATGTCCGGCCCTTCAGG 60.125 66.667 0.00 0.00 39.47 3.86
343 346 2.285368 ATGTCCGGCCCTTCAGGA 60.285 61.111 0.00 0.00 38.24 3.86
349 352 3.384348 GGCCCTTCAGGACGTGTA 58.616 61.111 0.00 0.00 38.24 2.90
350 353 1.079336 GGCCCTTCAGGACGTGTAC 60.079 63.158 0.00 0.00 38.24 2.90
351 354 1.542187 GGCCCTTCAGGACGTGTACT 61.542 60.000 0.00 0.00 38.24 2.73
352 355 0.389948 GCCCTTCAGGACGTGTACTG 60.390 60.000 5.85 5.85 42.93 2.74
353 356 0.246635 CCCTTCAGGACGTGTACTGG 59.753 60.000 12.15 0.00 41.86 4.00
354 357 0.966920 CCTTCAGGACGTGTACTGGT 59.033 55.000 12.15 0.00 41.86 4.00
355 358 1.067776 CCTTCAGGACGTGTACTGGTC 60.068 57.143 12.15 7.96 41.86 4.02
356 359 1.887198 CTTCAGGACGTGTACTGGTCT 59.113 52.381 12.15 1.87 41.86 3.85
357 360 1.244816 TCAGGACGTGTACTGGTCTG 58.755 55.000 12.15 10.90 41.86 3.51
358 361 0.388649 CAGGACGTGTACTGGTCTGC 60.389 60.000 4.22 2.48 37.88 4.26
359 362 0.539901 AGGACGTGTACTGGTCTGCT 60.540 55.000 13.90 4.26 33.70 4.24
360 363 0.388649 GGACGTGTACTGGTCTGCTG 60.389 60.000 13.90 0.00 33.70 4.41
361 364 0.388649 GACGTGTACTGGTCTGCTGG 60.389 60.000 0.00 0.00 0.00 4.85
362 365 0.826256 ACGTGTACTGGTCTGCTGGA 60.826 55.000 0.00 0.00 0.00 3.86
363 366 0.532573 CGTGTACTGGTCTGCTGGAT 59.467 55.000 0.00 0.00 0.00 3.41
380 383 4.194640 CTGGATGTTGGATAGACTTGTGG 58.805 47.826 0.00 0.00 0.00 4.17
405 408 2.210013 TCTGCCTCACCAAGCGTCT 61.210 57.895 0.00 0.00 0.00 4.18
412 415 1.272490 CTCACCAAGCGTCTTGTCCTA 59.728 52.381 15.28 2.01 0.00 2.94
413 416 1.899814 TCACCAAGCGTCTTGTCCTAT 59.100 47.619 15.28 0.00 0.00 2.57
416 419 4.051922 CACCAAGCGTCTTGTCCTATATC 58.948 47.826 15.28 0.00 0.00 1.63
488 492 2.342648 GCGAGGTCGGGTTCAAGT 59.657 61.111 0.89 0.00 40.23 3.16
505 509 3.191581 TCAAGTTTCTTTGCAACGGAACA 59.808 39.130 24.40 5.83 0.00 3.18
525 529 7.942538 CGGAACAAATACGTTTATTTTTCAAGC 59.057 33.333 0.00 0.00 36.00 4.01
548 552 6.951256 CGATTCATATCGTCATGGTGTATT 57.049 37.500 0.00 0.00 46.62 1.89
601 605 9.403583 TGATGGTGTTTAGGAACTTATAATTCC 57.596 33.333 14.18 14.18 45.23 3.01
656 661 7.692460 TGACTGCACAGATTTAAAAGATCAT 57.308 32.000 4.31 0.00 0.00 2.45
741 746 0.524180 GGACCGATTCGTACCGTGTC 60.524 60.000 5.20 4.09 0.00 3.67
774 779 1.360931 TTGTCGTCTCATGCATGCGG 61.361 55.000 22.25 16.08 0.00 5.69
864 878 4.204012 CAAAGTCCAGTGACCAAGGTTAA 58.796 43.478 0.00 0.00 42.81 2.01
865 879 4.513406 AAGTCCAGTGACCAAGGTTAAA 57.487 40.909 0.00 0.00 42.81 1.52
866 880 3.816994 AGTCCAGTGACCAAGGTTAAAC 58.183 45.455 0.00 0.00 42.81 2.01
897 915 2.096496 CCTGTCACAAATCAGCGAATCC 59.904 50.000 0.00 0.00 0.00 3.01
909 927 3.553597 CGAATCCACCTCGCTAGTC 57.446 57.895 0.00 0.00 0.00 2.59
910 928 0.317103 CGAATCCACCTCGCTAGTCG 60.317 60.000 0.00 0.00 40.15 4.18
912 930 1.038130 AATCCACCTCGCTAGTCGCT 61.038 55.000 2.24 0.00 38.27 4.93
987 2224 1.209998 CGATCAGTGCATCTCAGCAG 58.790 55.000 0.00 0.00 46.69 4.24
1003 2240 4.707105 TCAGCAGAAGAAAAGTGTGATGA 58.293 39.130 0.00 0.00 32.92 2.92
1017 2254 2.510238 ATGAAGAGAGCACGCGGC 60.510 61.111 12.47 11.61 45.30 6.53
1036 2273 2.066999 GGGGCCATCGTCCTCTTCT 61.067 63.158 4.39 0.00 0.00 2.85
1076 2322 0.036590 GGCATTGCCCAAAACACCAT 59.963 50.000 17.28 0.00 44.06 3.55
1401 3520 9.811995 GATCGTATACATATACATTGGCCTAAA 57.188 33.333 3.32 0.00 38.72 1.85
1403 3522 9.647797 TCGTATACATATACATTGGCCTAAAAG 57.352 33.333 3.32 0.00 38.72 2.27
1404 3523 8.388103 CGTATACATATACATTGGCCTAAAAGC 58.612 37.037 3.32 0.00 38.72 3.51
1405 3524 9.226606 GTATACATATACATTGGCCTAAAAGCA 57.773 33.333 3.32 0.00 38.66 3.91
1407 3526 7.219484 ACATATACATTGGCCTAAAAGCATC 57.781 36.000 3.32 0.00 0.00 3.91
1408 3527 7.006509 ACATATACATTGGCCTAAAAGCATCT 58.993 34.615 3.32 0.00 0.00 2.90
1409 3528 8.163408 ACATATACATTGGCCTAAAAGCATCTA 58.837 33.333 3.32 0.00 0.00 1.98
1410 3529 6.884280 ATACATTGGCCTAAAAGCATCTAC 57.116 37.500 3.32 0.00 0.00 2.59
1411 3530 4.599041 ACATTGGCCTAAAAGCATCTACA 58.401 39.130 3.32 0.00 0.00 2.74
1413 3532 5.105756 ACATTGGCCTAAAAGCATCTACAAC 60.106 40.000 3.32 0.00 0.00 3.32
1415 3534 2.354821 GGCCTAAAAGCATCTACAACCG 59.645 50.000 0.00 0.00 0.00 4.44
1417 3536 3.869065 CCTAAAAGCATCTACAACCGGA 58.131 45.455 9.46 0.00 0.00 5.14
1418 3537 3.621715 CCTAAAAGCATCTACAACCGGAC 59.378 47.826 9.46 0.00 0.00 4.79
1420 3539 0.252197 AAGCATCTACAACCGGACCC 59.748 55.000 9.46 0.00 0.00 4.46
1421 3540 1.153229 GCATCTACAACCGGACCCC 60.153 63.158 9.46 0.00 0.00 4.95
1422 3541 1.623542 GCATCTACAACCGGACCCCT 61.624 60.000 9.46 0.00 0.00 4.79
1424 3543 0.042131 ATCTACAACCGGACCCCTCA 59.958 55.000 9.46 0.00 0.00 3.86
1425 3544 0.178926 TCTACAACCGGACCCCTCAA 60.179 55.000 9.46 0.00 0.00 3.02
1427 3546 0.397564 TACAACCGGACCCCTCAAAC 59.602 55.000 9.46 0.00 0.00 2.93
1430 3549 3.253838 CCGGACCCCTCAAACCCA 61.254 66.667 0.00 0.00 0.00 4.51
1431 3550 2.612493 CCGGACCCCTCAAACCCAT 61.612 63.158 0.00 0.00 0.00 4.00
1432 3551 1.077716 CGGACCCCTCAAACCCATC 60.078 63.158 0.00 0.00 0.00 3.51
1433 3552 1.562672 CGGACCCCTCAAACCCATCT 61.563 60.000 0.00 0.00 0.00 2.90
1434 3553 0.256177 GGACCCCTCAAACCCATCTC 59.744 60.000 0.00 0.00 0.00 2.75
1435 3554 0.991920 GACCCCTCAAACCCATCTCA 59.008 55.000 0.00 0.00 0.00 3.27
1436 3555 1.354368 GACCCCTCAAACCCATCTCAA 59.646 52.381 0.00 0.00 0.00 3.02
1437 3556 1.786441 ACCCCTCAAACCCATCTCAAA 59.214 47.619 0.00 0.00 0.00 2.69
1439 3558 2.171003 CCCTCAAACCCATCTCAAACC 58.829 52.381 0.00 0.00 0.00 3.27
1440 3559 2.171003 CCTCAAACCCATCTCAAACCC 58.829 52.381 0.00 0.00 0.00 4.11
1441 3560 2.171003 CTCAAACCCATCTCAAACCCC 58.829 52.381 0.00 0.00 0.00 4.95
1442 3561 1.203125 TCAAACCCATCTCAAACCCCC 60.203 52.381 0.00 0.00 0.00 5.40
1443 3562 0.251608 AAACCCATCTCAAACCCCCG 60.252 55.000 0.00 0.00 0.00 5.73
1444 3563 1.137594 AACCCATCTCAAACCCCCGA 61.138 55.000 0.00 0.00 0.00 5.14
1446 3565 1.452108 CCATCTCAAACCCCCGAGC 60.452 63.158 0.00 0.00 0.00 5.03
1447 3566 1.299648 CATCTCAAACCCCCGAGCA 59.700 57.895 0.00 0.00 0.00 4.26
1448 3567 0.745845 CATCTCAAACCCCCGAGCAG 60.746 60.000 0.00 0.00 0.00 4.24
1449 3568 1.915078 ATCTCAAACCCCCGAGCAGG 61.915 60.000 0.00 0.00 40.63 4.85
1474 3593 4.451150 GTCGCTGCCCGGTCATGA 62.451 66.667 0.00 0.00 37.59 3.07
1475 3594 3.700970 TCGCTGCCCGGTCATGAA 61.701 61.111 0.00 0.00 37.59 2.57
1479 3598 0.532115 GCTGCCCGGTCATGAAATTT 59.468 50.000 0.00 0.00 0.00 1.82
1481 3600 1.818060 CTGCCCGGTCATGAAATTTGA 59.182 47.619 0.00 0.00 0.00 2.69
1482 3601 2.230992 CTGCCCGGTCATGAAATTTGAA 59.769 45.455 0.00 0.00 0.00 2.69
1483 3602 2.029470 TGCCCGGTCATGAAATTTGAAC 60.029 45.455 0.00 0.00 0.00 3.18
1484 3603 2.673893 GCCCGGTCATGAAATTTGAACC 60.674 50.000 0.00 0.00 0.00 3.62
1485 3604 2.094234 CCCGGTCATGAAATTTGAACCC 60.094 50.000 0.00 0.00 0.00 4.11
1487 3606 3.367292 CCGGTCATGAAATTTGAACCCAG 60.367 47.826 0.00 0.00 0.00 4.45
1488 3607 3.505680 CGGTCATGAAATTTGAACCCAGA 59.494 43.478 0.00 0.00 0.00 3.86
1489 3608 4.615912 CGGTCATGAAATTTGAACCCAGAC 60.616 45.833 0.00 0.00 0.00 3.51
1502 3621 4.452733 CAGACGGGCCCCTCGAAC 62.453 72.222 18.66 5.08 0.00 3.95
1511 3630 3.702048 CCCTCGAACGGCCCTCAA 61.702 66.667 0.00 0.00 0.00 3.02
1512 3631 2.345991 CCTCGAACGGCCCTCAAA 59.654 61.111 0.00 0.00 0.00 2.69
1513 3632 2.033194 CCTCGAACGGCCCTCAAAC 61.033 63.158 0.00 0.00 0.00 2.93
1514 3633 2.356553 TCGAACGGCCCTCAAACG 60.357 61.111 0.00 0.00 0.00 3.60
1515 3634 4.084888 CGAACGGCCCTCAAACGC 62.085 66.667 0.00 0.00 0.00 4.84
1516 3635 3.733960 GAACGGCCCTCAAACGCC 61.734 66.667 0.00 0.00 42.05 5.68
1517 3636 4.265056 AACGGCCCTCAAACGCCT 62.265 61.111 0.00 0.00 43.38 5.52
1520 3639 4.344865 GGCCCTCAAACGCCTGGA 62.345 66.667 0.00 0.00 42.21 3.86
1521 3640 3.056328 GCCCTCAAACGCCTGGAC 61.056 66.667 0.00 0.00 0.00 4.02
1522 3641 2.750350 CCCTCAAACGCCTGGACT 59.250 61.111 0.00 0.00 0.00 3.85
1523 3642 1.672356 CCCTCAAACGCCTGGACTG 60.672 63.158 0.00 0.00 0.00 3.51
1524 3643 1.371183 CCTCAAACGCCTGGACTGA 59.629 57.895 0.00 0.00 0.00 3.41
1525 3644 0.951040 CCTCAAACGCCTGGACTGAC 60.951 60.000 0.00 0.00 0.00 3.51
1526 3645 0.951040 CTCAAACGCCTGGACTGACC 60.951 60.000 0.00 0.00 39.54 4.02
1527 3646 2.030562 AAACGCCTGGACTGACCG 59.969 61.111 0.00 0.00 42.61 4.79
1528 3647 3.530910 AAACGCCTGGACTGACCGG 62.531 63.158 0.00 0.00 44.27 5.28
1532 3651 2.358737 CCTGGACTGACCGGCAAC 60.359 66.667 0.00 0.00 43.37 4.17
1533 3652 2.358737 CTGGACTGACCGGCAACC 60.359 66.667 0.00 7.94 42.61 3.77
1534 3653 3.901797 CTGGACTGACCGGCAACCC 62.902 68.421 0.00 5.40 42.61 4.11
1535 3654 4.717313 GGACTGACCGGCAACCCC 62.717 72.222 0.00 0.00 0.00 4.95
1536 3655 3.948719 GACTGACCGGCAACCCCA 61.949 66.667 0.00 0.00 0.00 4.96
1537 3656 3.256960 ACTGACCGGCAACCCCAT 61.257 61.111 0.00 0.00 0.00 4.00
1538 3657 1.906105 GACTGACCGGCAACCCCATA 61.906 60.000 0.00 0.00 0.00 2.74
1539 3658 1.279025 ACTGACCGGCAACCCCATAT 61.279 55.000 0.00 0.00 0.00 1.78
1540 3659 0.106719 CTGACCGGCAACCCCATATT 60.107 55.000 0.00 0.00 0.00 1.28
1541 3660 0.106918 TGACCGGCAACCCCATATTC 60.107 55.000 0.00 0.00 0.00 1.75
1542 3661 0.106918 GACCGGCAACCCCATATTCA 60.107 55.000 0.00 0.00 0.00 2.57
1543 3662 0.106719 ACCGGCAACCCCATATTCAG 60.107 55.000 0.00 0.00 0.00 3.02
1544 3663 1.455383 CCGGCAACCCCATATTCAGC 61.455 60.000 0.00 0.00 0.00 4.26
1545 3664 1.455383 CGGCAACCCCATATTCAGCC 61.455 60.000 0.00 0.00 37.32 4.85
1546 3665 1.115326 GGCAACCCCATATTCAGCCC 61.115 60.000 0.00 0.00 34.71 5.19
1547 3666 0.396974 GCAACCCCATATTCAGCCCA 60.397 55.000 0.00 0.00 0.00 5.36
1548 3667 1.964344 GCAACCCCATATTCAGCCCAA 60.964 52.381 0.00 0.00 0.00 4.12
1549 3668 2.465813 CAACCCCATATTCAGCCCAAA 58.534 47.619 0.00 0.00 0.00 3.28
1550 3669 3.040477 CAACCCCATATTCAGCCCAAAT 58.960 45.455 0.00 0.00 0.00 2.32
1551 3670 4.222336 CAACCCCATATTCAGCCCAAATA 58.778 43.478 0.00 0.00 0.00 1.40
1552 3671 4.765195 ACCCCATATTCAGCCCAAATAT 57.235 40.909 0.00 0.00 31.08 1.28
1553 3672 4.419282 ACCCCATATTCAGCCCAAATATG 58.581 43.478 12.85 12.85 42.67 1.78
1566 3685 3.711863 CCAAATATGGGGTGGATATGGG 58.288 50.000 0.00 0.00 43.51 4.00
1567 3686 3.099141 CAAATATGGGGTGGATATGGGC 58.901 50.000 0.00 0.00 0.00 5.36
1568 3687 1.308877 ATATGGGGTGGATATGGGCC 58.691 55.000 0.00 0.00 0.00 5.80
1569 3688 1.204786 TATGGGGTGGATATGGGCCG 61.205 60.000 0.00 0.00 0.00 6.13
1570 3689 4.660938 GGGGTGGATATGGGCCGC 62.661 72.222 0.00 0.00 35.19 6.53
1586 3705 3.508840 GCCCGGGCGTTGAAGATG 61.509 66.667 33.60 0.00 0.00 2.90
1587 3706 2.824041 CCCGGGCGTTGAAGATGG 60.824 66.667 8.08 0.00 0.00 3.51
1588 3707 3.508840 CCGGGCGTTGAAGATGGC 61.509 66.667 0.00 0.00 39.03 4.40
1593 3712 1.680338 GGCGTTGAAGATGGCCTTAT 58.320 50.000 3.32 0.00 42.29 1.73
1620 3739 3.767673 GGTTTAAATCCCTCTCAAACCCC 59.232 47.826 3.66 0.00 41.38 4.95
1621 3740 4.510386 GGTTTAAATCCCTCTCAAACCCCT 60.510 45.833 3.66 0.00 41.38 4.79
1622 3741 5.084519 GTTTAAATCCCTCTCAAACCCCTT 58.915 41.667 0.00 0.00 0.00 3.95
1623 3742 3.458044 AAATCCCTCTCAAACCCCTTC 57.542 47.619 0.00 0.00 0.00 3.46
1624 3743 2.059756 ATCCCTCTCAAACCCCTTCA 57.940 50.000 0.00 0.00 0.00 3.02
1625 3744 1.827792 TCCCTCTCAAACCCCTTCAA 58.172 50.000 0.00 0.00 0.00 2.69
1626 3745 2.358258 TCCCTCTCAAACCCCTTCAAT 58.642 47.619 0.00 0.00 0.00 2.57
1627 3746 2.308866 TCCCTCTCAAACCCCTTCAATC 59.691 50.000 0.00 0.00 0.00 2.67
1628 3747 2.621668 CCCTCTCAAACCCCTTCAATCC 60.622 54.545 0.00 0.00 0.00 3.01
1629 3748 2.310052 CCTCTCAAACCCCTTCAATCCT 59.690 50.000 0.00 0.00 0.00 3.24
1652 3771 2.028476 TCGGATTCACACTCAACCGAAT 60.028 45.455 0.00 0.00 44.76 3.34
1655 3774 4.032900 CGGATTCACACTCAACCGAATAAG 59.967 45.833 0.00 0.00 42.40 1.73
1696 3815 7.778382 TGCTTGACTATCCAACTACTAGTCATA 59.222 37.037 0.00 4.16 46.36 2.15
1880 4000 2.246739 CGATGGCATCATCCGCGTT 61.247 57.895 25.88 0.00 45.20 4.84
1881 4001 0.943835 CGATGGCATCATCCGCGTTA 60.944 55.000 25.88 0.00 45.20 3.18
1882 4002 0.512952 GATGGCATCATCCGCGTTAC 59.487 55.000 22.23 0.00 42.92 2.50
2212 4501 1.474478 CCGTATATGATGGAGCTCGCT 59.526 52.381 7.83 0.00 36.09 4.93
2374 4663 4.393834 TGTTTAGCAGGCAAATGTGTCTA 58.606 39.130 0.00 0.00 37.72 2.59
2727 5020 1.356398 TCCGGTCCAAGGGCTTTATTT 59.644 47.619 0.00 0.00 0.00 1.40
2871 5164 2.031258 TGTGCTCAGACGAACCAAAA 57.969 45.000 0.00 0.00 0.00 2.44
3017 5310 7.509141 TGAGAGATCTTAGACTAGATGCAAG 57.491 40.000 0.00 0.00 35.06 4.01
3133 5426 6.918067 TTCTCCTAACTGACTCAATCAAGA 57.082 37.500 0.00 0.00 36.69 3.02
3249 5542 7.586300 CCTTCGTTGTTAATGTGTCACTAAAAG 59.414 37.037 4.27 0.00 0.00 2.27
3271 6056 4.218417 AGCATGTATTCAAAACCTCCACAC 59.782 41.667 0.00 0.00 0.00 3.82
3338 6124 8.076910 TGATGGAAAAACATATGGCATACTTT 57.923 30.769 9.83 7.66 0.00 2.66
3378 6164 4.244862 CACCAGCCAACAATTAATCCAAC 58.755 43.478 0.00 0.00 0.00 3.77
3382 6168 5.352016 CCAGCCAACAATTAATCCAACAATG 59.648 40.000 0.00 0.00 0.00 2.82
3536 6322 4.614993 CGGAAAGTCAAAATACACGGCAAT 60.615 41.667 0.00 0.00 0.00 3.56
3584 6370 5.991606 CAGTTGTGAGATGAGAGGTAACAAA 59.008 40.000 0.00 0.00 41.41 2.83
3625 6413 5.007682 ACCTATGTAACGAAATGCAAGGTT 58.992 37.500 0.00 0.00 30.79 3.50
3626 6414 5.475564 ACCTATGTAACGAAATGCAAGGTTT 59.524 36.000 0.00 0.00 30.79 3.27
3742 6530 1.187974 CTGGCATTTCTGATTGGGCA 58.812 50.000 0.00 0.00 0.00 5.36
3802 6590 3.853355 ATCTGCTTGTAATCCCTCTGG 57.147 47.619 0.00 0.00 0.00 3.86
4042 6830 6.546428 TCACCCTGCTTTATAGATATAGCC 57.454 41.667 8.82 0.00 36.78 3.93
4111 6899 9.551734 TGAAGAATGACATCTCAAACTATATGG 57.448 33.333 0.00 0.00 0.00 2.74
4195 6983 8.740906 TGGTGTTACACTATTTTGTTCAGAAAA 58.259 29.630 15.44 0.00 34.40 2.29
4196 6984 9.744468 GGTGTTACACTATTTTGTTCAGAAAAT 57.256 29.630 15.44 0.00 38.69 1.82
4295 7083 8.964533 ACTATCTCTGATCCATAATAGGTGTT 57.035 34.615 0.00 0.00 0.00 3.32
4297 7085 6.425210 TCTCTGATCCATAATAGGTGTTGG 57.575 41.667 0.00 0.00 0.00 3.77
4333 7122 1.665679 CTGTTCAACACTGCGACACTT 59.334 47.619 0.00 0.00 0.00 3.16
4360 7149 2.362717 GGATCCGAGGGAGTAAGAAGTG 59.637 54.545 0.00 0.00 34.05 3.16
4646 7440 9.624697 TTGAAATAGTTGATTATGTTGTTGAGC 57.375 29.630 0.00 0.00 0.00 4.26
4874 7676 9.620259 TTGTGATAGTATGCCATATTTTGTACA 57.380 29.630 0.00 0.00 0.00 2.90
4947 7749 4.477536 AGCCTATGGATGGAGAGAAGTA 57.522 45.455 0.00 0.00 0.00 2.24
5052 7854 1.070601 CCATATCGCAGTGTCATCCCA 59.929 52.381 0.00 0.00 0.00 4.37
5260 8062 6.114187 ACACACTCAATCCAAGAGTCATTA 57.886 37.500 0.00 0.00 44.11 1.90
5850 8658 0.320421 TTAGAGTTGGTGTGCGCTCC 60.320 55.000 9.73 11.44 0.00 4.70
5868 8676 2.159382 TCCAGCAAAATTCCGGAGTTC 58.841 47.619 13.15 0.62 0.00 3.01
6560 9494 4.320608 TTTCTTGAAACCATTGAGCACC 57.679 40.909 0.00 0.00 0.00 5.01
6637 9571 4.063689 CTGCTGGAGTATCTAAATGGCAG 58.936 47.826 0.00 0.00 38.57 4.85
6698 9635 7.276658 TGGCGACTACAATATTCTCCATTTTA 58.723 34.615 0.00 0.00 0.00 1.52
6719 9657 8.873215 TTTTAGAAGAGAGTTGAGTACTGTTG 57.127 34.615 0.00 0.00 37.17 3.33
6736 9674 6.793492 ACTGTTGCAGTTTCTTAGATCTTC 57.207 37.500 0.00 0.00 42.59 2.87
6737 9675 6.291377 ACTGTTGCAGTTTCTTAGATCTTCA 58.709 36.000 0.00 0.00 42.59 3.02
6971 10112 2.293399 GGTGAGCTAACCCAAGTTTGTG 59.707 50.000 9.45 0.00 37.42 3.33
6981 10122 4.816392 ACCCAAGTTTGTGTTTTCTGAAC 58.184 39.130 0.00 0.00 0.00 3.18
7008 10364 5.648178 ATTCAGCAATGCACATGTTCTTA 57.352 34.783 8.35 0.00 0.00 2.10
7039 10396 8.032952 TGCACTTCACTACAGAGAAAATTATG 57.967 34.615 0.00 0.00 0.00 1.90
7158 11288 1.545136 TCGTGCATTGCATTGTTCCAT 59.455 42.857 15.49 0.00 41.91 3.41
7268 11402 3.687698 GCGTGTATGGATGGTTGTACTTT 59.312 43.478 0.00 0.00 0.00 2.66
7446 11580 7.994425 TTGGTTTTGATACATCTAAGCTCAA 57.006 32.000 0.00 0.00 0.00 3.02
7448 11582 7.168219 TGGTTTTGATACATCTAAGCTCAAGT 58.832 34.615 0.00 0.00 0.00 3.16
7638 11828 7.699566 ACTAAACTCGCTATTCTCTTCTAGTG 58.300 38.462 0.00 0.00 0.00 2.74
7990 12378 4.038402 ACTGAGGCTCTTTTTGGAATTGTG 59.962 41.667 16.72 0.00 0.00 3.33
8177 12604 9.513906 TTGATTTACCAAACAGATCAATAGACA 57.486 29.630 0.00 0.00 33.26 3.41
8231 12745 8.807948 AAGTAAAGTACATAATGCTCCACAAT 57.192 30.769 0.00 0.00 0.00 2.71
8254 12768 3.126001 TCACAAACTAAGCCTGACAGG 57.874 47.619 17.83 17.83 38.80 4.00
8325 12848 5.542635 TGAGGGGTATGGTACTGCTAAATAG 59.457 44.000 0.00 0.00 0.00 1.73
8484 13026 4.536090 TCCCAAGAATTCTCCACTATGTGT 59.464 41.667 8.78 0.00 0.00 3.72
8526 13068 8.964533 ATACTCAACATAACAGGAGGAGATAT 57.035 34.615 0.00 0.00 0.00 1.63
8699 13241 4.213270 TGTTGATGAACCGCTACAAAGAAG 59.787 41.667 0.00 0.00 0.00 2.85
8771 13315 6.183360 ACACAAGCAAGTTAAGAAAAGGAGAC 60.183 38.462 0.00 0.00 0.00 3.36
8775 13319 6.064717 AGCAAGTTAAGAAAAGGAGACATGT 58.935 36.000 0.00 0.00 0.00 3.21
8859 13416 4.713553 TCACAGTTTGAGCAGAAATGGTA 58.286 39.130 0.00 0.00 0.00 3.25
8915 13477 7.332430 CCAAAATAACAATGCAACATCACTGAT 59.668 33.333 0.00 0.00 0.00 2.90
8927 13489 6.458751 GCAACATCACTGATTCATATCGGTTT 60.459 38.462 0.00 0.00 45.99 3.27
9092 13657 8.772705 TGTGCATTCAAAATCAAGTAAATTTCC 58.227 29.630 0.00 0.00 0.00 3.13
9135 13705 0.606401 CAGGCATCGGTTGGTCAACT 60.606 55.000 12.75 0.00 40.94 3.16
9162 13732 5.420739 TGAAAAGGCTAATTGGTCCCATTAC 59.579 40.000 0.00 0.00 0.00 1.89
9172 13742 6.959639 ATTGGTCCCATTACATCATGTAAC 57.040 37.500 12.58 0.31 44.54 2.50
9207 13778 6.051717 ACAATCAAAGCTCGCTATGAAGTAT 58.948 36.000 0.00 0.00 0.00 2.12
9339 13911 9.125906 GTCAATATGTCGGTAATACATGACTAC 57.874 37.037 0.00 0.00 38.05 2.73
9360 13934 3.011708 ACAGCCCTATGTCCCTCAAAAAT 59.988 43.478 0.00 0.00 0.00 1.82
9593 14167 7.184204 TCCTAAAGTACCCATTACCAAACCATA 59.816 37.037 0.00 0.00 0.00 2.74
9668 14242 8.663911 CAAACTGAAATCAAAGCAAAAGGTTAA 58.336 29.630 0.00 0.00 0.00 2.01
9692 14266 4.533707 CCCATATCCACATGTATCCTCTGT 59.466 45.833 0.00 0.00 0.00 3.41
9743 14317 2.029623 CTCCAAAAGGCATAGCAGCAT 58.970 47.619 0.00 0.00 35.83 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.980143 AGCGCACAATAACTAAAACAAATAAT 57.020 26.923 11.47 0.00 0.00 1.28
18 19 8.293867 AGAGCGCACAATAACTAAAACAAATAA 58.706 29.630 11.47 0.00 0.00 1.40
19 20 7.812648 AGAGCGCACAATAACTAAAACAAATA 58.187 30.769 11.47 0.00 0.00 1.40
20 21 6.677913 AGAGCGCACAATAACTAAAACAAAT 58.322 32.000 11.47 0.00 0.00 2.32
21 22 6.067263 AGAGCGCACAATAACTAAAACAAA 57.933 33.333 11.47 0.00 0.00 2.83
22 23 5.682943 AGAGCGCACAATAACTAAAACAA 57.317 34.783 11.47 0.00 0.00 2.83
23 24 5.448438 CAAGAGCGCACAATAACTAAAACA 58.552 37.500 11.47 0.00 0.00 2.83
24 25 4.320953 GCAAGAGCGCACAATAACTAAAAC 59.679 41.667 11.47 0.00 0.00 2.43
25 26 4.023622 TGCAAGAGCGCACAATAACTAAAA 60.024 37.500 11.47 0.00 46.23 1.52
26 27 3.500299 TGCAAGAGCGCACAATAACTAAA 59.500 39.130 11.47 0.00 46.23 1.85
27 28 3.070748 TGCAAGAGCGCACAATAACTAA 58.929 40.909 11.47 0.00 46.23 2.24
28 29 2.672874 CTGCAAGAGCGCACAATAACTA 59.327 45.455 11.47 0.00 46.23 2.24
29 30 1.466167 CTGCAAGAGCGCACAATAACT 59.534 47.619 11.47 0.00 46.23 2.24
30 31 1.197721 ACTGCAAGAGCGCACAATAAC 59.802 47.619 11.47 0.00 46.23 1.89
31 32 1.522668 ACTGCAAGAGCGCACAATAA 58.477 45.000 11.47 0.00 46.23 1.40
32 33 2.378445 TACTGCAAGAGCGCACAATA 57.622 45.000 11.47 0.00 46.23 1.90
33 34 1.742761 ATACTGCAAGAGCGCACAAT 58.257 45.000 11.47 0.00 46.23 2.71
34 35 1.522668 AATACTGCAAGAGCGCACAA 58.477 45.000 11.47 0.00 46.23 3.33
35 36 1.522668 AAATACTGCAAGAGCGCACA 58.477 45.000 11.47 0.00 46.23 4.57
36 37 2.095768 TGAAAATACTGCAAGAGCGCAC 60.096 45.455 11.47 2.25 46.23 5.34
37 38 2.095768 GTGAAAATACTGCAAGAGCGCA 60.096 45.455 11.47 0.00 46.23 6.09
61 62 1.406898 TCAAAAGCAAACACGATGCCA 59.593 42.857 0.00 0.00 44.91 4.92
63 64 2.339400 CGATCAAAAGCAAACACGATGC 59.661 45.455 0.00 0.00 44.15 3.91
67 68 1.752753 TGCGATCAAAAGCAAACACG 58.247 45.000 0.00 0.00 40.78 4.49
79 80 6.052360 TGTGCCTATAAGTTAATTGCGATCA 58.948 36.000 0.00 0.00 0.00 2.92
91 92 7.806180 AGGTTTATCAGAATGTGCCTATAAGT 58.194 34.615 0.00 0.00 37.40 2.24
99 100 9.202273 CTCTTATAGAGGTTTATCAGAATGTGC 57.798 37.037 0.00 0.00 38.67 4.57
131 132 5.518487 CGAGAGAGAGCTTTAGAAAATGACC 59.482 44.000 0.00 0.00 0.00 4.02
132 133 6.326375 TCGAGAGAGAGCTTTAGAAAATGAC 58.674 40.000 0.00 0.00 34.84 3.06
179 180 7.554118 ACAAATGCACATAGTTGAGTTATAGCT 59.446 33.333 0.00 0.00 0.00 3.32
184 185 7.333423 GTCCTACAAATGCACATAGTTGAGTTA 59.667 37.037 0.00 0.00 0.00 2.24
193 194 5.744171 ACTGATGTCCTACAAATGCACATA 58.256 37.500 0.00 0.00 0.00 2.29
294 297 0.486879 AATTTGAGAGGGGCCCACAA 59.513 50.000 27.72 23.19 0.00 3.33
317 320 2.332654 GGCCGGACATGCGAAAAGT 61.333 57.895 5.05 0.00 0.00 2.66
332 335 1.079336 GTACACGTCCTGAAGGGCC 60.079 63.158 0.00 0.00 36.14 5.80
333 336 0.389948 CAGTACACGTCCTGAAGGGC 60.390 60.000 0.00 0.00 36.18 5.19
336 339 1.887198 AGACCAGTACACGTCCTGAAG 59.113 52.381 7.74 0.00 0.00 3.02
337 340 1.611977 CAGACCAGTACACGTCCTGAA 59.388 52.381 7.74 0.00 0.00 3.02
338 341 1.244816 CAGACCAGTACACGTCCTGA 58.755 55.000 7.74 0.00 0.00 3.86
339 342 0.388649 GCAGACCAGTACACGTCCTG 60.389 60.000 8.32 7.61 0.00 3.86
340 343 0.539901 AGCAGACCAGTACACGTCCT 60.540 55.000 8.32 0.00 0.00 3.85
341 344 0.388649 CAGCAGACCAGTACACGTCC 60.389 60.000 8.32 0.00 0.00 4.79
342 345 0.388649 CCAGCAGACCAGTACACGTC 60.389 60.000 0.00 0.00 0.00 4.34
343 346 0.826256 TCCAGCAGACCAGTACACGT 60.826 55.000 0.00 0.00 0.00 4.49
344 347 0.532573 ATCCAGCAGACCAGTACACG 59.467 55.000 0.00 0.00 0.00 4.49
346 349 1.644509 ACATCCAGCAGACCAGTACA 58.355 50.000 0.00 0.00 0.00 2.90
347 350 2.350522 CAACATCCAGCAGACCAGTAC 58.649 52.381 0.00 0.00 0.00 2.73
348 351 1.278985 CCAACATCCAGCAGACCAGTA 59.721 52.381 0.00 0.00 0.00 2.74
349 352 0.037303 CCAACATCCAGCAGACCAGT 59.963 55.000 0.00 0.00 0.00 4.00
350 353 0.325933 TCCAACATCCAGCAGACCAG 59.674 55.000 0.00 0.00 0.00 4.00
351 354 0.994247 ATCCAACATCCAGCAGACCA 59.006 50.000 0.00 0.00 0.00 4.02
352 355 2.435805 TCTATCCAACATCCAGCAGACC 59.564 50.000 0.00 0.00 0.00 3.85
353 356 3.133721 AGTCTATCCAACATCCAGCAGAC 59.866 47.826 0.00 0.00 33.08 3.51
354 357 3.378512 AGTCTATCCAACATCCAGCAGA 58.621 45.455 0.00 0.00 0.00 4.26
355 358 3.834489 AGTCTATCCAACATCCAGCAG 57.166 47.619 0.00 0.00 0.00 4.24
356 359 3.264193 ACAAGTCTATCCAACATCCAGCA 59.736 43.478 0.00 0.00 0.00 4.41
357 360 3.624861 CACAAGTCTATCCAACATCCAGC 59.375 47.826 0.00 0.00 0.00 4.85
358 361 4.080919 TCCACAAGTCTATCCAACATCCAG 60.081 45.833 0.00 0.00 0.00 3.86
359 362 3.843619 TCCACAAGTCTATCCAACATCCA 59.156 43.478 0.00 0.00 0.00 3.41
360 363 4.192317 GTCCACAAGTCTATCCAACATCC 58.808 47.826 0.00 0.00 0.00 3.51
361 364 4.192317 GGTCCACAAGTCTATCCAACATC 58.808 47.826 0.00 0.00 0.00 3.06
362 365 3.369471 CGGTCCACAAGTCTATCCAACAT 60.369 47.826 0.00 0.00 0.00 2.71
363 366 2.028476 CGGTCCACAAGTCTATCCAACA 60.028 50.000 0.00 0.00 0.00 3.33
380 383 4.083862 GGTGAGGCAGACCCGGTC 62.084 72.222 9.81 9.81 39.21 4.79
405 408 7.068348 GTCTACCTTCACACAGATATAGGACAA 59.932 40.741 0.00 0.00 0.00 3.18
412 415 3.637229 CCCGTCTACCTTCACACAGATAT 59.363 47.826 0.00 0.00 0.00 1.63
413 416 3.021695 CCCGTCTACCTTCACACAGATA 58.978 50.000 0.00 0.00 0.00 1.98
416 419 1.067776 GTCCCGTCTACCTTCACACAG 60.068 57.143 0.00 0.00 0.00 3.66
479 483 2.857748 CGTTGCAAAGAAACTTGAACCC 59.142 45.455 6.52 0.00 0.00 4.11
488 492 4.735822 CGTATTTGTTCCGTTGCAAAGAAA 59.264 37.500 14.32 6.68 37.89 2.52
505 509 9.400638 TGAATCGCTTGAAAAATAAACGTATTT 57.599 25.926 0.00 0.00 40.88 1.40
548 552 0.608035 GCGACAATTGGGAGGAACCA 60.608 55.000 10.83 0.00 41.20 3.67
562 566 2.659063 CCATCAGAGGTGGGCGACA 61.659 63.158 1.14 0.00 32.98 4.35
601 605 6.892691 AGCTCTTTTAAAAATCGTCAGTCAG 58.107 36.000 1.66 0.00 0.00 3.51
605 609 7.012358 GTGAGAGCTCTTTTAAAAATCGTCAG 58.988 38.462 19.36 0.00 0.00 3.51
620 624 1.067000 GTGCAGTCATGTGAGAGCTCT 60.067 52.381 18.28 18.28 0.00 4.09
656 661 2.483583 AATTTGTCTGCGCAAACGAA 57.516 40.000 18.45 18.45 43.93 3.85
741 746 3.194542 AGACGACAAGAGGGATCAAAGAG 59.805 47.826 0.00 0.00 0.00 2.85
774 779 5.595952 AGTTGCCTCTGGATAAATGAATTCC 59.404 40.000 2.27 0.00 0.00 3.01
864 878 5.968528 TTTGTGACAGGTTAGTTGTTGTT 57.031 34.783 0.00 0.00 0.00 2.83
865 879 5.650266 TGATTTGTGACAGGTTAGTTGTTGT 59.350 36.000 0.00 0.00 0.00 3.32
866 880 6.130298 TGATTTGTGACAGGTTAGTTGTTG 57.870 37.500 0.00 0.00 0.00 3.33
912 930 2.490903 GTCAAACTGGGAGTAGCGACTA 59.509 50.000 0.00 0.00 35.45 2.59
987 2224 5.468072 TGCTCTCTTCATCACACTTTTCTTC 59.532 40.000 0.00 0.00 0.00 2.87
1017 2254 3.447025 GAAGAGGACGATGGCCCCG 62.447 68.421 12.37 12.37 0.00 5.73
1019 2256 0.462759 CAAGAAGAGGACGATGGCCC 60.463 60.000 0.00 0.00 0.00 5.80
1020 2257 0.250513 ACAAGAAGAGGACGATGGCC 59.749 55.000 0.00 0.00 0.00 5.36
1076 2322 1.382522 GAATCCATCTGCTTTGCCGA 58.617 50.000 0.00 0.00 0.00 5.54
1291 2540 2.159612 TCTGAATCCTGACGACGTAACG 60.160 50.000 0.00 0.00 39.31 3.18
1294 2543 4.713824 ATTTCTGAATCCTGACGACGTA 57.286 40.909 0.00 0.00 0.00 3.57
1370 2623 9.239002 GCCAATGTATATGTATACGATCTCTTC 57.761 37.037 0.00 0.00 41.04 2.87
1401 3520 0.252197 GGGTCCGGTTGTAGATGCTT 59.748 55.000 0.00 0.00 0.00 3.91
1403 3522 1.153229 GGGGTCCGGTTGTAGATGC 60.153 63.158 0.00 0.00 0.00 3.91
1404 3523 0.464452 GAGGGGTCCGGTTGTAGATG 59.536 60.000 0.00 0.00 0.00 2.90
1405 3524 0.042131 TGAGGGGTCCGGTTGTAGAT 59.958 55.000 0.00 0.00 0.00 1.98
1407 3526 0.688487 TTTGAGGGGTCCGGTTGTAG 59.312 55.000 0.00 0.00 0.00 2.74
1408 3527 0.397564 GTTTGAGGGGTCCGGTTGTA 59.602 55.000 0.00 0.00 0.00 2.41
1409 3528 1.149854 GTTTGAGGGGTCCGGTTGT 59.850 57.895 0.00 0.00 0.00 3.32
1410 3529 1.602605 GGTTTGAGGGGTCCGGTTG 60.603 63.158 0.00 0.00 0.00 3.77
1411 3530 2.837326 GGGTTTGAGGGGTCCGGTT 61.837 63.158 0.00 0.00 0.00 4.44
1413 3532 2.552231 GATGGGTTTGAGGGGTCCGG 62.552 65.000 0.00 0.00 0.00 5.14
1415 3534 0.256177 GAGATGGGTTTGAGGGGTCC 59.744 60.000 0.00 0.00 0.00 4.46
1417 3536 1.455822 TTGAGATGGGTTTGAGGGGT 58.544 50.000 0.00 0.00 0.00 4.95
1418 3537 2.171003 GTTTGAGATGGGTTTGAGGGG 58.829 52.381 0.00 0.00 0.00 4.79
1420 3539 2.171003 GGGTTTGAGATGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
1421 3540 2.171003 GGGGTTTGAGATGGGTTTGAG 58.829 52.381 0.00 0.00 0.00 3.02
1422 3541 1.203125 GGGGGTTTGAGATGGGTTTGA 60.203 52.381 0.00 0.00 0.00 2.69
1424 3543 0.251608 CGGGGGTTTGAGATGGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
1425 3544 1.137594 TCGGGGGTTTGAGATGGGTT 61.138 55.000 0.00 0.00 0.00 4.11
1427 3546 1.224592 CTCGGGGGTTTGAGATGGG 59.775 63.158 0.00 0.00 34.04 4.00
1430 3549 1.604378 CTGCTCGGGGGTTTGAGAT 59.396 57.895 0.00 0.00 34.04 2.75
1431 3550 2.592993 CCTGCTCGGGGGTTTGAGA 61.593 63.158 0.00 0.00 34.04 3.27
1432 3551 2.045926 CCTGCTCGGGGGTTTGAG 60.046 66.667 0.00 0.00 35.30 3.02
1433 3552 4.344865 GCCTGCTCGGGGGTTTGA 62.345 66.667 0.00 0.00 0.00 2.69
1457 3576 3.950794 TTCATGACCGGGCAGCGAC 62.951 63.158 18.96 0.00 0.00 5.19
1458 3577 2.535485 ATTTCATGACCGGGCAGCGA 62.535 55.000 18.96 12.87 0.00 4.93
1461 3580 1.818060 TCAAATTTCATGACCGGGCAG 59.182 47.619 18.96 8.45 0.00 4.85
1462 3581 1.916506 TCAAATTTCATGACCGGGCA 58.083 45.000 15.46 15.46 0.00 5.36
1463 3582 2.606108 GTTCAAATTTCATGACCGGGC 58.394 47.619 6.32 1.57 0.00 6.13
1464 3583 2.094234 GGGTTCAAATTTCATGACCGGG 60.094 50.000 6.32 0.00 0.00 5.73
1465 3584 2.560542 TGGGTTCAAATTTCATGACCGG 59.439 45.455 0.00 0.00 0.00 5.28
1466 3585 3.505680 TCTGGGTTCAAATTTCATGACCG 59.494 43.478 0.00 0.00 0.00 4.79
1467 3586 4.615912 CGTCTGGGTTCAAATTTCATGACC 60.616 45.833 0.00 0.00 0.00 4.02
1468 3587 4.475944 CGTCTGGGTTCAAATTTCATGAC 58.524 43.478 0.00 0.00 0.00 3.06
1469 3588 3.505680 CCGTCTGGGTTCAAATTTCATGA 59.494 43.478 0.00 0.00 0.00 3.07
1470 3589 3.836949 CCGTCTGGGTTCAAATTTCATG 58.163 45.455 0.00 0.00 0.00 3.07
1485 3604 4.452733 GTTCGAGGGGCCCGTCTG 62.453 72.222 35.21 28.32 0.00 3.51
1494 3613 3.248446 TTTGAGGGCCGTTCGAGGG 62.248 63.158 0.00 0.46 0.00 4.30
1495 3614 2.033194 GTTTGAGGGCCGTTCGAGG 61.033 63.158 0.00 0.00 0.00 4.63
1496 3615 2.380410 CGTTTGAGGGCCGTTCGAG 61.380 63.158 0.00 0.00 0.00 4.04
1498 3617 4.084888 GCGTTTGAGGGCCGTTCG 62.085 66.667 0.00 4.30 0.00 3.95
1499 3618 3.733960 GGCGTTTGAGGGCCGTTC 61.734 66.667 0.00 0.00 39.93 3.95
1504 3623 3.056328 GTCCAGGCGTTTGAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
1505 3624 1.672356 CAGTCCAGGCGTTTGAGGG 60.672 63.158 0.00 0.00 0.00 4.30
1506 3625 0.951040 GTCAGTCCAGGCGTTTGAGG 60.951 60.000 0.00 0.00 0.00 3.86
1507 3626 0.951040 GGTCAGTCCAGGCGTTTGAG 60.951 60.000 0.00 0.00 35.97 3.02
1508 3627 1.070786 GGTCAGTCCAGGCGTTTGA 59.929 57.895 0.00 0.00 35.97 2.69
1509 3628 2.317609 CGGTCAGTCCAGGCGTTTG 61.318 63.158 0.00 0.00 35.57 2.93
1510 3629 2.030562 CGGTCAGTCCAGGCGTTT 59.969 61.111 0.00 0.00 35.57 3.60
1511 3630 4.003788 CCGGTCAGTCCAGGCGTT 62.004 66.667 0.00 0.00 35.57 4.84
1515 3634 2.358737 GTTGCCGGTCAGTCCAGG 60.359 66.667 1.90 0.00 35.57 4.45
1516 3635 2.358737 GGTTGCCGGTCAGTCCAG 60.359 66.667 1.90 0.00 35.57 3.86
1517 3636 3.948719 GGGTTGCCGGTCAGTCCA 61.949 66.667 1.90 0.00 35.57 4.02
1518 3637 4.717313 GGGGTTGCCGGTCAGTCC 62.717 72.222 1.90 8.23 0.00 3.85
1519 3638 1.906105 TATGGGGTTGCCGGTCAGTC 61.906 60.000 1.90 0.00 0.00 3.51
1520 3639 1.279025 ATATGGGGTTGCCGGTCAGT 61.279 55.000 1.90 0.00 0.00 3.41
1521 3640 0.106719 AATATGGGGTTGCCGGTCAG 60.107 55.000 1.90 0.00 0.00 3.51
1522 3641 0.106918 GAATATGGGGTTGCCGGTCA 60.107 55.000 1.90 0.00 0.00 4.02
1523 3642 0.106918 TGAATATGGGGTTGCCGGTC 60.107 55.000 1.90 0.00 0.00 4.79
1524 3643 0.106719 CTGAATATGGGGTTGCCGGT 60.107 55.000 1.90 0.00 0.00 5.28
1525 3644 1.455383 GCTGAATATGGGGTTGCCGG 61.455 60.000 0.00 0.00 0.00 6.13
1526 3645 1.455383 GGCTGAATATGGGGTTGCCG 61.455 60.000 0.00 0.00 0.00 5.69
1527 3646 1.115326 GGGCTGAATATGGGGTTGCC 61.115 60.000 0.00 0.00 38.28 4.52
1528 3647 0.396974 TGGGCTGAATATGGGGTTGC 60.397 55.000 0.00 0.00 0.00 4.17
1529 3648 2.157640 TTGGGCTGAATATGGGGTTG 57.842 50.000 0.00 0.00 0.00 3.77
1530 3649 2.938428 TTTGGGCTGAATATGGGGTT 57.062 45.000 0.00 0.00 0.00 4.11
1531 3650 4.419282 CATATTTGGGCTGAATATGGGGT 58.581 43.478 17.78 0.00 40.93 4.95
1545 3664 3.711863 CCCATATCCACCCCATATTTGG 58.288 50.000 0.00 0.00 43.23 3.28
1546 3665 3.099141 GCCCATATCCACCCCATATTTG 58.901 50.000 0.00 0.00 0.00 2.32
1547 3666 2.044353 GGCCCATATCCACCCCATATTT 59.956 50.000 0.00 0.00 0.00 1.40
1548 3667 1.645919 GGCCCATATCCACCCCATATT 59.354 52.381 0.00 0.00 0.00 1.28
1549 3668 1.308877 GGCCCATATCCACCCCATAT 58.691 55.000 0.00 0.00 0.00 1.78
1550 3669 1.204786 CGGCCCATATCCACCCCATA 61.205 60.000 0.00 0.00 0.00 2.74
1551 3670 2.538141 CGGCCCATATCCACCCCAT 61.538 63.158 0.00 0.00 0.00 4.00
1552 3671 3.174987 CGGCCCATATCCACCCCA 61.175 66.667 0.00 0.00 0.00 4.96
1553 3672 4.660938 GCGGCCCATATCCACCCC 62.661 72.222 0.00 0.00 0.00 4.95
1554 3673 4.660938 GGCGGCCCATATCCACCC 62.661 72.222 8.12 0.00 0.00 4.61
1555 3674 4.660938 GGGCGGCCCATATCCACC 62.661 72.222 32.90 1.31 44.65 4.61
1569 3688 3.508840 CATCTTCAACGCCCGGGC 61.509 66.667 36.69 36.69 37.85 6.13
1570 3689 2.824041 CCATCTTCAACGCCCGGG 60.824 66.667 19.09 19.09 0.00 5.73
1571 3690 3.508840 GCCATCTTCAACGCCCGG 61.509 66.667 0.00 0.00 0.00 5.73
1572 3691 3.508840 GGCCATCTTCAACGCCCG 61.509 66.667 0.00 0.00 35.23 6.13
1573 3692 0.393808 TAAGGCCATCTTCAACGCCC 60.394 55.000 5.01 0.00 42.66 6.13
1574 3693 1.680338 ATAAGGCCATCTTCAACGCC 58.320 50.000 5.01 0.00 41.96 5.68
1575 3694 3.251004 CCTTATAAGGCCATCTTCAACGC 59.749 47.826 18.52 0.00 39.76 4.84
1576 3695 3.815401 CCCTTATAAGGCCATCTTCAACG 59.185 47.826 24.05 4.10 45.10 4.10
1577 3696 4.145052 CCCCTTATAAGGCCATCTTCAAC 58.855 47.826 24.05 0.00 45.10 3.18
1578 3697 3.791545 ACCCCTTATAAGGCCATCTTCAA 59.208 43.478 24.05 0.00 45.10 2.69
1579 3698 3.403322 ACCCCTTATAAGGCCATCTTCA 58.597 45.455 24.05 0.00 45.10 3.02
1580 3699 4.455070 AACCCCTTATAAGGCCATCTTC 57.545 45.455 24.05 0.00 45.10 2.87
1581 3700 4.899898 AAACCCCTTATAAGGCCATCTT 57.100 40.909 24.05 10.37 45.10 2.40
1582 3701 6.349897 TTTAAACCCCTTATAAGGCCATCT 57.650 37.500 24.05 10.36 45.10 2.90
1583 3702 6.210784 GGATTTAAACCCCTTATAAGGCCATC 59.789 42.308 24.05 15.00 45.10 3.51
1584 3703 6.082031 GGATTTAAACCCCTTATAAGGCCAT 58.918 40.000 24.05 12.69 45.10 4.40
1585 3704 5.460416 GGATTTAAACCCCTTATAAGGCCA 58.540 41.667 24.05 5.52 45.10 5.36
1586 3705 4.836736 GGGATTTAAACCCCTTATAAGGCC 59.163 45.833 24.05 15.91 45.10 5.19
1609 3728 3.265479 AGAGGATTGAAGGGGTTTGAGAG 59.735 47.826 0.00 0.00 0.00 3.20
1610 3729 3.260205 AGAGGATTGAAGGGGTTTGAGA 58.740 45.455 0.00 0.00 0.00 3.27
1611 3730 3.615155 GAGAGGATTGAAGGGGTTTGAG 58.385 50.000 0.00 0.00 0.00 3.02
1628 3747 2.611518 GGTTGAGTGTGAATCCGAGAG 58.388 52.381 0.00 0.00 0.00 3.20
1629 3748 1.067846 CGGTTGAGTGTGAATCCGAGA 60.068 52.381 0.00 0.00 40.29 4.04
1637 3756 2.614481 GGCCTTATTCGGTTGAGTGTGA 60.614 50.000 0.00 0.00 0.00 3.58
1652 3771 6.546034 GTCAAGCAATTTATCCTTAGGCCTTA 59.454 38.462 12.58 0.00 0.00 2.69
1655 3774 4.889995 AGTCAAGCAATTTATCCTTAGGCC 59.110 41.667 0.00 0.00 0.00 5.19
1696 3815 5.699001 CAGTACACTAGATGAGCGTCTAGAT 59.301 44.000 25.67 17.57 46.91 1.98
1774 3894 8.677148 TTGAGCAATTATCTGGTTTAGATACC 57.323 34.615 0.00 0.00 45.68 2.73
1880 4000 7.618117 TGGATGGCGGATTATCTTTCTATAGTA 59.382 37.037 0.00 0.00 0.00 1.82
1881 4001 6.440647 TGGATGGCGGATTATCTTTCTATAGT 59.559 38.462 0.00 0.00 0.00 2.12
1882 4002 6.758886 GTGGATGGCGGATTATCTTTCTATAG 59.241 42.308 0.00 0.00 0.00 1.31
2032 4319 5.938710 TGTTGGCACCGATGTTAGTAATAAA 59.061 36.000 0.00 0.00 0.00 1.40
2038 4325 1.071699 AGTGTTGGCACCGATGTTAGT 59.928 47.619 0.00 0.00 46.35 2.24
2212 4501 7.575414 ATTCTATTTCTTCTCGAGACTGCTA 57.425 36.000 16.36 0.00 33.02 3.49
2336 4625 7.552687 CCTGCTAAACATGAGGTTCAAAGTATA 59.447 37.037 0.00 0.00 39.29 1.47
2374 4663 4.729868 ACCAATTAGGCTCTCAACACTTT 58.270 39.130 0.00 0.00 43.14 2.66
2496 4785 7.416022 CAAAATTAAAAGCTGCCAACATTTGA 58.584 30.769 0.00 0.00 0.00 2.69
2727 5020 3.173151 TGCTGTCTCTTGGATAGGACAA 58.827 45.455 0.00 0.00 35.23 3.18
3017 5310 9.906660 TTTTCTGTATTGTGGTTTTCATACATC 57.093 29.630 0.00 0.00 0.00 3.06
3057 5350 8.990163 TCAACTAGAAATAAACCACCTTCTTT 57.010 30.769 0.00 0.00 30.90 2.52
3133 5426 6.971840 TGAGGCCATACTATAATAGGGGATTT 59.028 38.462 5.01 0.00 0.00 2.17
3223 5516 6.533819 TTAGTGACACATTAACAACGAAGG 57.466 37.500 8.59 0.00 0.00 3.46
3249 5542 4.485163 GTGTGGAGGTTTTGAATACATGC 58.515 43.478 0.00 0.00 0.00 4.06
3258 5551 4.822036 TCATTAACGTGTGGAGGTTTTG 57.178 40.909 0.00 0.00 32.51 2.44
3313 6098 7.658525 AAGTATGCCATATGTTTTTCCATCA 57.341 32.000 1.24 0.00 0.00 3.07
3319 6104 7.906327 ACAGGAAAAGTATGCCATATGTTTTT 58.094 30.769 1.24 6.69 0.00 1.94
3338 6124 3.146066 GGTGCATGTCTTTGTACAGGAA 58.854 45.455 0.00 0.00 33.05 3.36
3536 6322 7.629157 TGGTTCTAGATTGTTATGGATGTTGA 58.371 34.615 0.00 0.00 0.00 3.18
3625 6413 7.516470 CGTTGCACTTTTTCTATGAAAATGCAA 60.516 33.333 25.91 25.91 42.38 4.08
3626 6414 6.074409 CGTTGCACTTTTTCTATGAAAATGCA 60.074 34.615 20.54 20.54 39.00 3.96
3742 6530 9.003658 CAAGATACAAGTCAAAAGTATGAACCT 57.996 33.333 0.00 0.00 0.00 3.50
3784 6572 2.420687 GGACCAGAGGGATTACAAGCAG 60.421 54.545 0.00 0.00 38.05 4.24
4042 6830 1.135315 CAACTCAGGCGGCGATTTG 59.865 57.895 12.98 14.90 0.00 2.32
4111 6899 8.197988 ACATTCCATATTCGTTAGTCAAACTC 57.802 34.615 0.00 0.00 35.81 3.01
4195 6983 7.735326 ATCTATAAAGTGGGCGAATACCTAT 57.265 36.000 0.00 0.00 0.00 2.57
4196 6984 8.654485 TTATCTATAAAGTGGGCGAATACCTA 57.346 34.615 0.00 0.00 0.00 3.08
4197 6985 7.549147 TTATCTATAAAGTGGGCGAATACCT 57.451 36.000 0.00 0.00 0.00 3.08
4199 6987 7.386848 TGCTTTATCTATAAAGTGGGCGAATAC 59.613 37.037 18.85 4.39 46.78 1.89
4201 6989 6.204882 GTGCTTTATCTATAAAGTGGGCGAAT 59.795 38.462 18.85 0.00 46.78 3.34
4204 6992 5.057149 AGTGCTTTATCTATAAAGTGGGCG 58.943 41.667 18.85 0.51 46.78 6.13
4205 6993 7.041303 GGTTAGTGCTTTATCTATAAAGTGGGC 60.041 40.741 18.85 9.62 46.78 5.36
4274 7062 5.307976 CCCAACACCTATTATGGATCAGAGA 59.692 44.000 0.00 0.00 34.82 3.10
4277 7065 5.310409 ACCCAACACCTATTATGGATCAG 57.690 43.478 0.00 0.00 34.82 2.90
4297 7085 6.127394 TGTTGAACAGGGGTTAGTTTAAAACC 60.127 38.462 0.00 0.00 44.75 3.27
4314 7103 1.732941 AAGTGTCGCAGTGTTGAACA 58.267 45.000 0.00 0.00 0.00 3.18
4333 7122 5.213519 TCTTACTCCCTCGGATCCAAAATA 58.786 41.667 13.41 0.00 0.00 1.40
4360 7149 5.885230 GGGTAATAGTGTAACACCCAAAC 57.115 43.478 3.21 0.00 46.81 2.93
4874 7676 0.109086 CGAGTCATCTGGTGTCGCTT 60.109 55.000 0.00 0.00 0.00 4.68
4947 7749 4.651045 TCAGTGTCATCATATACTGCCACT 59.349 41.667 0.00 0.00 40.15 4.00
5052 7854 2.350522 GTCTCACTTGTTGCCGATGAT 58.649 47.619 0.00 0.00 0.00 2.45
5090 7892 3.181468 TGTTTGCATTGCCATCAACTCAA 60.181 39.130 6.12 0.00 34.60 3.02
5260 8062 3.007182 CCAAGAACACCATTCATTGCCTT 59.993 43.478 0.00 0.00 0.00 4.35
5277 8079 6.214615 TGGAAACATGATACCTTACTCCAAGA 59.785 38.462 0.00 0.00 33.20 3.02
5850 8658 3.855689 ATGAACTCCGGAATTTTGCTG 57.144 42.857 5.23 0.00 0.00 4.41
5868 8676 8.722480 TGACAGGATCTTTGTATGTCTTTATG 57.278 34.615 5.37 0.00 40.67 1.90
6062 8881 7.209475 TCACACAGAAAATTGAGAAATTTCCC 58.791 34.615 14.61 3.42 34.39 3.97
6560 9494 0.745486 TGCTGCCAATCCACATCTCG 60.745 55.000 0.00 0.00 0.00 4.04
6637 9571 0.527565 GGGACCATGCACATGTTCAC 59.472 55.000 0.00 2.82 37.11 3.18
6698 9635 4.342378 TGCAACAGTACTCAACTCTCTTCT 59.658 41.667 0.00 0.00 35.76 2.85
6816 9773 9.672673 ATGTTTAGTCAGCTCAATGTAGTAATT 57.327 29.630 0.00 0.00 0.00 1.40
6981 10122 4.242475 ACATGTGCATTGCTGAATTTCTG 58.758 39.130 10.49 0.00 0.00 3.02
7008 10364 8.621532 TTTCTCTGTAGTGAAGTGCAATTAAT 57.378 30.769 0.00 0.00 0.00 1.40
7039 10396 8.154649 ACTAATTCAAACATCGGATAATGTCC 57.845 34.615 0.00 0.00 38.92 4.02
7348 11482 3.766545 TCCATTCTTTTGGAGTTCCTGG 58.233 45.455 0.00 0.00 40.90 4.45
7446 11580 4.623932 TCTTCAAGTGTTGCATAGGACT 57.376 40.909 0.00 0.00 0.00 3.85
7448 11582 6.240894 AGAAATCTTCAAGTGTTGCATAGGA 58.759 36.000 0.00 0.00 0.00 2.94
7622 11757 9.787532 GATGATATGACACTAGAAGAGAATAGC 57.212 37.037 0.00 0.00 0.00 2.97
7638 11828 6.615264 ACTGCAATCTTGTGATGATATGAC 57.385 37.500 0.00 0.00 32.44 3.06
7961 12349 4.041567 TCCAAAAAGAGCCTCAGTGTGATA 59.958 41.667 0.00 0.00 0.00 2.15
8177 12604 6.941857 AGTTGGTGTAAAAAGGTTGTGAAAT 58.058 32.000 0.00 0.00 0.00 2.17
8212 12639 7.992608 TGTGATTATTGTGGAGCATTATGTACT 59.007 33.333 0.00 0.00 0.00 2.73
8231 12745 5.245531 CCTGTCAGGCTTAGTTTGTGATTA 58.754 41.667 5.79 0.00 0.00 1.75
8254 12768 9.353999 CTTAAATAGCACAAAATCCAGTAAACC 57.646 33.333 0.00 0.00 0.00 3.27
8325 12848 8.954950 ATATGCAGCTAATATGATGGTTCTAC 57.045 34.615 0.00 0.00 0.00 2.59
8366 12899 8.936864 CATCGACTCAGTAAAATCCTAAAAACT 58.063 33.333 0.00 0.00 0.00 2.66
8484 13026 2.766263 AGTATCGCCCTTGACATCTCAA 59.234 45.455 0.00 0.00 35.04 3.02
8771 13315 7.916977 TGTTTTCATCTCTTTGTTCTTCACATG 59.083 33.333 0.00 0.00 34.43 3.21
8775 13319 7.864108 TCTGTTTTCATCTCTTTGTTCTTCA 57.136 32.000 0.00 0.00 0.00 3.02
8859 13416 0.606604 CTACTGTGTGGTAGCCGGTT 59.393 55.000 1.90 0.00 33.80 4.44
8927 13489 3.396276 TGTCTCCCCAAGAATGGTTTGTA 59.604 43.478 0.00 0.00 46.01 2.41
9092 13657 2.880890 AGGCTGAAGCACAAGTAAACTG 59.119 45.455 4.43 0.00 44.36 3.16
9125 13690 3.883489 AGCCTTTTCAGTAGTTGACCAAC 59.117 43.478 4.81 4.81 41.45 3.77
9135 13705 4.043561 TGGGACCAATTAGCCTTTTCAGTA 59.956 41.667 0.00 0.00 0.00 2.74
9172 13742 6.560983 GCGAGCTTTGATTGTTTCAAGAAAAG 60.561 38.462 0.00 11.72 44.90 2.27
9184 13755 4.871993 ACTTCATAGCGAGCTTTGATTG 57.128 40.909 16.53 14.51 34.84 2.67
9207 13778 9.839185 ATCTTACTAAAGGAGCATATACCCTAA 57.161 33.333 0.00 0.00 33.22 2.69
9339 13911 2.806945 TTTTGAGGGACATAGGGCTG 57.193 50.000 0.00 0.00 0.00 4.85
9360 13934 9.742144 TTACTATAATTTCAAAGGGTTGTAGCA 57.258 29.630 0.00 0.00 36.07 3.49
9595 14169 8.255206 TGCTTGCAATTCAATCTATTTGATTCT 58.745 29.630 0.00 0.00 43.73 2.40
9668 14242 4.533707 CAGAGGATACATGTGGATATGGGT 59.466 45.833 9.11 0.00 41.41 4.51
9692 14266 1.194218 TTCTCATGGTCGGCTCATCA 58.806 50.000 0.00 0.00 0.00 3.07
9743 14317 3.130734 AGCTCACCCTAAATCCACCTA 57.869 47.619 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.