Multiple sequence alignment - TraesCS5D01G051200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G051200 chr5D 100.000 6388 0 0 1526 7913 49105894 49112281 0.000000e+00 11797.0
1 TraesCS5D01G051200 chr5D 100.000 1585 0 0 8298 9882 49112666 49114250 0.000000e+00 2928.0
2 TraesCS5D01G051200 chr5D 100.000 1122 0 0 1 1122 49104369 49105490 0.000000e+00 2073.0
3 TraesCS5D01G051200 chr5D 92.042 377 30 0 5678 6054 49109953 49110329 1.890000e-146 531.0
4 TraesCS5D01G051200 chr5D 92.042 377 30 0 5585 5961 49110046 49110422 1.890000e-146 531.0
5 TraesCS5D01G051200 chr5D 91.525 118 10 0 4751 4868 49109086 49109203 7.940000e-36 163.0
6 TraesCS5D01G051200 chr5D 91.525 118 10 0 4718 4835 49109119 49109236 7.940000e-36 163.0
7 TraesCS5D01G051200 chr5D 90.588 85 8 0 4784 4868 49109086 49109170 8.110000e-21 113.0
8 TraesCS5D01G051200 chr5D 88.462 52 6 0 4817 4868 49109086 49109137 8.290000e-06 63.9
9 TraesCS5D01G051200 chr5D 88.462 52 6 0 4718 4769 49109185 49109236 8.290000e-06 63.9
10 TraesCS5D01G051200 chr5B 96.813 5523 141 17 1549 7043 51831555 51837070 0.000000e+00 9191.0
11 TraesCS5D01G051200 chr5B 96.839 1582 39 8 8305 9882 51838169 51839743 0.000000e+00 2634.0
12 TraesCS5D01G051200 chr5B 97.516 644 12 3 7035 7674 51837093 51837736 0.000000e+00 1098.0
13 TraesCS5D01G051200 chr5B 79.220 1179 148 47 3 1120 51830339 51831481 0.000000e+00 730.0
14 TraesCS5D01G051200 chr5B 92.308 377 29 0 5678 6054 51835610 51835986 4.060000e-148 536.0
15 TraesCS5D01G051200 chr5B 91.512 377 32 0 5585 5961 51835703 51836079 4.090000e-143 520.0
16 TraesCS5D01G051200 chr5B 92.580 283 21 0 5771 6053 51835610 51835892 3.320000e-109 407.0
17 TraesCS5D01G051200 chr5B 94.495 109 6 0 4751 4859 51834737 51834845 1.710000e-37 169.0
18 TraesCS5D01G051200 chr5A 96.439 5252 160 11 1556 6786 38724767 38730012 0.000000e+00 8637.0
19 TraesCS5D01G051200 chr5A 95.136 1583 66 6 8305 9882 38731354 38732930 0.000000e+00 2486.0
20 TraesCS5D01G051200 chr5A 91.516 884 48 10 1 863 38723287 38724164 0.000000e+00 1192.0
21 TraesCS5D01G051200 chr5A 98.077 572 10 1 7035 7606 38730193 38730763 0.000000e+00 994.0
22 TraesCS5D01G051200 chr5A 92.308 377 29 0 5678 6054 38728810 38729186 4.060000e-148 536.0
23 TraesCS5D01G051200 chr5A 92.308 377 29 0 5585 5961 38728903 38729279 4.060000e-148 536.0
24 TraesCS5D01G051200 chr5A 92.933 283 20 0 5585 5867 38728996 38729278 7.140000e-111 412.0
25 TraesCS5D01G051200 chr5A 96.835 158 3 2 6888 7043 38730013 38730170 7.610000e-66 263.0
26 TraesCS5D01G051200 chr5A 90.116 172 9 6 957 1122 38724528 38724697 6.010000e-52 217.0
27 TraesCS5D01G051200 chr5A 91.525 118 10 0 4751 4868 38727936 38728053 7.940000e-36 163.0
28 TraesCS5D01G051200 chr5A 91.525 118 10 0 4718 4835 38727969 38728086 7.940000e-36 163.0
29 TraesCS5D01G051200 chr5A 92.941 85 6 0 4718 4802 38728002 38728086 3.750000e-24 124.0
30 TraesCS5D01G051200 chr5A 90.385 52 5 0 4718 4769 38728035 38728086 1.780000e-07 69.4
31 TraesCS5D01G051200 chr5A 88.889 45 5 0 4817 4861 38727936 38727980 1.000000e-03 56.5
32 TraesCS5D01G051200 chr4B 93.359 256 16 1 1743 1998 510130092 510130346 2.610000e-100 377.0
33 TraesCS5D01G051200 chr1B 93.359 256 16 1 1743 1998 643923765 643924019 2.610000e-100 377.0
34 TraesCS5D01G051200 chr1B 90.458 262 24 1 1743 2004 8402695 8402435 2.640000e-90 344.0
35 TraesCS5D01G051200 chr3B 91.985 262 20 1 1743 2004 761465824 761465564 5.640000e-97 366.0
36 TraesCS5D01G051200 chr3B 87.850 214 18 7 1549 1756 6593839 6594050 2.760000e-60 244.0
37 TraesCS5D01G051200 chr7B 92.188 256 19 1 1743 1998 100428342 100428596 2.620000e-95 361.0
38 TraesCS5D01G051200 chr7B 100.000 28 0 0 2910 2937 684401764 684401791 1.800000e-02 52.8
39 TraesCS5D01G051200 chr2B 90.840 262 23 1 1743 2004 371337479 371337219 5.680000e-92 350.0
40 TraesCS5D01G051200 chrUn 87.558 217 19 7 1549 1759 287555883 287555669 2.760000e-60 244.0
41 TraesCS5D01G051200 chrUn 87.850 214 18 7 1549 1756 291991694 291991905 2.760000e-60 244.0
42 TraesCS5D01G051200 chr2A 79.937 319 47 12 9536 9849 524846100 524845794 1.670000e-52 219.0
43 TraesCS5D01G051200 chr2A 96.296 108 3 1 6784 6890 746800122 746800229 1.020000e-39 176.0
44 TraesCS5D01G051200 chr2A 93.162 117 7 1 6784 6899 173127265 173127149 4.750000e-38 171.0
45 TraesCS5D01G051200 chr2D 94.872 117 4 2 6781 6896 73968054 73968169 2.190000e-41 182.0
46 TraesCS5D01G051200 chr7D 96.296 108 3 1 6784 6890 185178163 185178056 1.020000e-39 176.0
47 TraesCS5D01G051200 chr6D 94.690 113 5 1 6781 6892 68899898 68900010 3.670000e-39 174.0
48 TraesCS5D01G051200 chr4D 93.966 116 5 2 6783 6896 155576797 155576682 3.670000e-39 174.0
49 TraesCS5D01G051200 chr7A 93.913 115 6 1 6779 6892 538102640 538102526 1.320000e-38 172.0
50 TraesCS5D01G051200 chr7A 89.922 129 9 4 6769 6894 638698951 638699078 7.940000e-36 163.0
51 TraesCS5D01G051200 chr4A 84.314 102 16 0 1858 1959 660522278 660522379 6.320000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G051200 chr5D 49104369 49114250 9881 False 1842.680000 11797 93.464600 1 9882 10 chr5D.!!$F1 9881
1 TraesCS5D01G051200 chr5B 51830339 51839743 9404 False 1910.625000 9191 92.660375 3 9882 8 chr5B.!!$F1 9879
2 TraesCS5D01G051200 chr5A 38723287 38732930 9643 False 1132.064286 8637 92.923786 1 9882 14 chr5A.!!$F1 9881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 690 0.245539 TACGAAACCTCTCCGCCTTG 59.754 55.000 0.00 0.0 0.00 3.61 F
912 972 1.128188 AAAGCCAGACCGTTCCTCCT 61.128 55.000 0.00 0.0 0.00 3.69 F
1735 2093 1.525077 GTTGCGTGGAAGGGTCACA 60.525 57.895 0.00 0.0 35.03 3.58 F
2231 2593 1.346395 GGGACATACGGTGCATATCCA 59.654 52.381 0.00 0.0 40.06 3.41 F
3462 3836 1.467734 CACACAGAGCATTCAGAAGCC 59.532 52.381 0.00 0.0 0.00 4.35 F
3895 4269 0.320050 TCAGTCAACTGCGGTGCATA 59.680 50.000 0.00 0.0 43.46 3.14 F
5571 5952 0.771755 GTCCAGGAACCAAGGAAGGT 59.228 55.000 0.00 0.0 45.91 3.50 F
5880 6261 0.401738 CCAAAGGCCTCCAAGAGTCA 59.598 55.000 5.23 0.0 0.00 3.41 F
7690 8110 2.042569 ACTGATTTTAGGTCCAACCCCC 59.957 50.000 0.00 0.0 39.75 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 2171 0.749091 TGCTGGCGAATCATCCAAGG 60.749 55.000 0.00 0.00 30.98 3.61 R
1943 2304 0.804933 GGTCGTACCGGTCAAGCATC 60.805 60.000 12.40 0.00 0.00 3.91 R
3106 3473 1.616865 TCAACCTCACTGAGTTACCCG 59.383 52.381 5.32 0.00 0.00 5.28 R
3762 4136 0.959372 CCTTCTTGCTGTCAGGCTGG 60.959 60.000 15.73 0.00 0.00 4.85 R
4268 4642 0.242017 GGCTTGCACACTCCAATGTC 59.758 55.000 0.00 0.00 0.00 3.06 R
5767 6148 0.402121 GACTCTTGGAGGCCTTTGGT 59.598 55.000 6.77 0.14 30.04 3.67 R
6587 6968 3.555168 CCAAAGGTAGAGTCAGTGGTCAC 60.555 52.174 0.00 0.00 0.00 3.67 R
7692 8112 0.536460 ATAATTAACAGGGCGCGGGG 60.536 55.000 8.83 0.00 0.00 5.73 R
9522 9949 2.288642 ATCCTCCCATGGCAACGCAT 62.289 55.000 6.09 0.00 42.51 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.808414 TCCGACTCTGATGAAACTCATT 57.192 40.909 0.00 0.00 37.20 2.57
92 93 8.495260 AGCCTTTACCTTACTATTAGCTTTGAT 58.505 33.333 0.00 0.00 0.00 2.57
137 145 3.028850 TCGAGTTCCCGGTTATGAAGAT 58.971 45.455 0.00 0.00 0.00 2.40
144 152 2.618709 CCCGGTTATGAAGATGAAAGGC 59.381 50.000 0.00 0.00 0.00 4.35
169 177 8.210525 GCGAAGAGATCAAAATTGTTCTTTTTC 58.789 33.333 7.86 11.96 37.36 2.29
178 186 7.338196 TCAAAATTGTTCTTTTTCCCCCTTTTC 59.662 33.333 0.00 0.00 0.00 2.29
193 201 2.029623 CTTTTCTGGGATGGGATGCAG 58.970 52.381 0.00 0.00 0.00 4.41
387 397 0.250513 AGCCTCCTCACCGAATCAAC 59.749 55.000 0.00 0.00 0.00 3.18
390 400 0.613260 CTCCTCACCGAATCAACCCA 59.387 55.000 0.00 0.00 0.00 4.51
434 444 2.436417 CACCTTCATCATCCACGGTTT 58.564 47.619 0.00 0.00 0.00 3.27
448 458 1.296056 CGGTTTCGGCGACCTTCATT 61.296 55.000 10.16 0.00 34.95 2.57
500 521 2.294979 GAATACCTTTGCCCTAACCGG 58.705 52.381 0.00 0.00 0.00 5.28
570 591 3.644265 ACAAACACCCAGAATTAAACCCC 59.356 43.478 0.00 0.00 0.00 4.95
630 666 0.323957 GCGTTCTACCCAAACTCCCT 59.676 55.000 0.00 0.00 0.00 4.20
634 670 3.512724 CGTTCTACCCAAACTCCCTAGAA 59.487 47.826 0.00 0.00 0.00 2.10
636 672 5.361857 CGTTCTACCCAAACTCCCTAGAATA 59.638 44.000 0.00 0.00 0.00 1.75
644 680 5.338137 CCAAACTCCCTAGAATACGAAACCT 60.338 44.000 0.00 0.00 0.00 3.50
652 688 1.136500 GAATACGAAACCTCTCCGCCT 59.864 52.381 0.00 0.00 0.00 5.52
654 690 0.245539 TACGAAACCTCTCCGCCTTG 59.754 55.000 0.00 0.00 0.00 3.61
660 696 2.812619 CCTCTCCGCCTTGATCCCC 61.813 68.421 0.00 0.00 0.00 4.81
726 774 2.287769 GATTCAGAGAAGCAAGGGAGC 58.712 52.381 0.00 0.00 0.00 4.70
793 852 9.396022 GGAAATCAATAATCAGAGGTGAGTAAA 57.604 33.333 0.00 0.00 36.85 2.01
905 965 1.528309 CAACCCAAAGCCAGACCGT 60.528 57.895 0.00 0.00 0.00 4.83
912 972 1.128188 AAAGCCAGACCGTTCCTCCT 61.128 55.000 0.00 0.00 0.00 3.69
1032 1366 1.739049 CTCCGATCTGGTGAGCTCC 59.261 63.158 12.15 2.19 39.52 4.70
1735 2093 1.525077 GTTGCGTGGAAGGGTCACA 60.525 57.895 0.00 0.00 35.03 3.58
1736 2094 1.525077 TTGCGTGGAAGGGTCACAC 60.525 57.895 0.00 0.00 35.03 3.82
1737 2095 2.110213 GCGTGGAAGGGTCACACA 59.890 61.111 0.00 0.00 34.91 3.72
1756 2116 2.108700 CAGCGGTTTTTGTTCTGAACG 58.891 47.619 15.18 3.34 0.00 3.95
1768 2128 7.490962 TTTGTTCTGAACGTGAGAAATATGT 57.509 32.000 15.18 0.00 31.27 2.29
1771 2131 5.530519 TCTGAACGTGAGAAATATGTTGC 57.469 39.130 0.00 0.00 0.00 4.17
1810 2171 1.670967 GCAATTTCCTTGTGAGCAGGC 60.671 52.381 0.00 0.00 37.18 4.85
1943 2304 4.012895 GGTGGTGCACGCGTGAAG 62.013 66.667 41.19 17.44 34.83 3.02
2190 2552 1.756538 TCTATTCGCAGTCTGGCATGA 59.243 47.619 0.00 0.00 0.00 3.07
2231 2593 1.346395 GGGACATACGGTGCATATCCA 59.654 52.381 0.00 0.00 40.06 3.41
2328 2690 3.564571 GCTCTATGAGGGGCTATCCAGTA 60.565 52.174 0.00 0.00 37.22 2.74
2435 2797 3.511146 TCCTTTCACAATGGAATTCTGCC 59.489 43.478 5.23 0.00 31.22 4.85
2502 2864 2.864343 GCTCGTACTGATAAAATGGCGT 59.136 45.455 0.00 0.00 0.00 5.68
2788 3155 5.192176 TCTTGAGTTATGTTGGCATATGCA 58.808 37.500 28.07 12.31 44.36 3.96
2975 3342 2.309613 TGCTGCTGGTTTTGTGAAGAT 58.690 42.857 0.00 0.00 0.00 2.40
3102 3469 1.474478 TCGCCTTGTCAAGTGCAAAAA 59.526 42.857 19.56 5.62 0.00 1.94
3106 3473 3.740832 GCCTTGTCAAGTGCAAAAATACC 59.259 43.478 16.57 0.00 0.00 2.73
3271 3644 1.598183 CGTGCTGTGCTACTAGATCCG 60.598 57.143 0.00 0.00 0.00 4.18
3462 3836 1.467734 CACACAGAGCATTCAGAAGCC 59.532 52.381 0.00 0.00 0.00 4.35
3468 3842 2.570752 AGAGCATTCAGAAGCCTCAGAA 59.429 45.455 12.83 0.00 32.30 3.02
3739 4113 7.176690 TGGTCCTTCTTCAGTTTTTCATAATCC 59.823 37.037 0.00 0.00 0.00 3.01
3762 4136 2.354003 CCCCTCATGGTTTTGACATTGC 60.354 50.000 0.00 0.00 0.00 3.56
3895 4269 0.320050 TCAGTCAACTGCGGTGCATA 59.680 50.000 0.00 0.00 43.46 3.14
3910 4284 3.866910 GGTGCATACCAAATTTGCTGATG 59.133 43.478 12.92 14.53 46.71 3.07
4029 4403 6.925610 TGGATTAAGAGAAATCACCATTCG 57.074 37.500 0.00 0.00 37.56 3.34
4057 4431 4.091549 TCCTTGTACGAGTATTCCTGGTT 58.908 43.478 9.32 0.00 33.72 3.67
4069 4443 4.819105 ATTCCTGGTTCGTCTGATAACA 57.181 40.909 0.00 0.00 0.00 2.41
4268 4642 2.755469 CCACCTGGATTTGGGCCG 60.755 66.667 0.00 0.00 37.39 6.13
4354 4728 1.686355 AGTTGGTGGCGTGAATCAAA 58.314 45.000 0.00 0.00 0.00 2.69
4363 4737 2.595386 GCGTGAATCAAATTCCACCAC 58.405 47.619 0.00 0.00 38.50 4.16
4374 4748 7.295322 TCAAATTCCACCACATATTTTGACA 57.705 32.000 0.00 0.00 0.00 3.58
4812 5186 2.810852 GGCTCTAGATGCAATAACCAGC 59.189 50.000 13.76 0.00 0.00 4.85
4813 5187 3.470709 GCTCTAGATGCAATAACCAGCA 58.529 45.455 0.00 0.00 45.92 4.41
4863 5237 1.675310 TCCGGCTGAAATGGCTGTG 60.675 57.895 0.00 0.00 34.56 3.66
4937 5317 1.978080 TGGCAGGCGCAACATCATT 60.978 52.632 10.83 0.00 41.24 2.57
4956 5336 4.094739 TCATTTGTATCTGATGTGGCAACG 59.905 41.667 0.00 0.00 42.51 4.10
5023 5403 4.216257 GCATTTTGTCTTACCTGAGCTTGA 59.784 41.667 0.00 0.00 0.00 3.02
5211 5592 5.363868 TGGTCATGGACAAAAACAAATACCA 59.636 36.000 0.00 0.00 33.68 3.25
5571 5952 0.771755 GTCCAGGAACCAAGGAAGGT 59.228 55.000 0.00 0.00 45.91 3.50
5704 6085 3.493699 CCTCCAAGAGTCGTACCAAAACA 60.494 47.826 0.00 0.00 0.00 2.83
5767 6148 0.546122 AGCGGCTTCCCAATGATGTA 59.454 50.000 0.00 0.00 0.00 2.29
5806 6187 6.867293 AGAGTCGTACCAAAACTCTTGATAAC 59.133 38.462 8.35 0.00 45.69 1.89
5837 6218 4.837860 ACCCTTTGAATATCAAACAAGGCA 59.162 37.500 1.57 0.00 41.02 4.75
5880 6261 0.401738 CCAAAGGCCTCCAAGAGTCA 59.598 55.000 5.23 0.00 0.00 3.41
6587 6968 3.405831 TCTCTTGCCATGACAGTTTGAG 58.594 45.455 0.00 0.00 0.00 3.02
6810 7193 5.104693 TCCCTCTGTTCACTTTTGTAAGTCA 60.105 40.000 0.00 0.00 42.67 3.41
6880 7264 9.538508 GTCTAAAAGGTCTTACTAAAGTGAACA 57.461 33.333 0.00 0.00 34.13 3.18
7196 7611 3.476552 TGCTTGGTAGTCTCAAACCTTG 58.523 45.455 0.00 0.00 36.67 3.61
7354 7769 4.304110 TCGTGTGAGGTAAACTGCTTAAG 58.696 43.478 0.00 0.00 0.00 1.85
7475 7890 6.295292 GGGCCACAAGAAGATTTTCATTTACT 60.295 38.462 4.39 0.00 35.70 2.24
7486 7901 4.419522 TTTCATTTACTCAAAGAGGCGC 57.580 40.909 0.00 0.00 33.35 6.53
7574 7990 3.292460 CACTGTGGTTCCCAAAGGTAAA 58.708 45.455 5.48 0.00 42.92 2.01
7575 7991 3.895041 CACTGTGGTTCCCAAAGGTAAAT 59.105 43.478 5.48 0.00 42.92 1.40
7576 7992 4.022329 CACTGTGGTTCCCAAAGGTAAATC 60.022 45.833 5.48 0.00 42.92 2.17
7577 7993 4.148838 CTGTGGTTCCCAAAGGTAAATCA 58.851 43.478 0.00 0.00 35.31 2.57
7686 8106 7.981102 AGTTTCTACTGATTTTAGGTCCAAC 57.019 36.000 0.00 0.00 31.99 3.77
7687 8107 6.940867 AGTTTCTACTGATTTTAGGTCCAACC 59.059 38.462 0.00 0.00 33.65 3.77
7688 8108 5.431179 TCTACTGATTTTAGGTCCAACCC 57.569 43.478 0.00 0.00 39.75 4.11
7689 8109 3.451402 ACTGATTTTAGGTCCAACCCC 57.549 47.619 0.00 0.00 39.75 4.95
7690 8110 2.042569 ACTGATTTTAGGTCCAACCCCC 59.957 50.000 0.00 0.00 39.75 5.40
7708 8128 4.499633 CCCCCGCGCCCTGTTAAT 62.500 66.667 0.00 0.00 0.00 1.40
7709 8129 2.439519 CCCCGCGCCCTGTTAATT 60.440 61.111 0.00 0.00 0.00 1.40
7710 8130 1.153127 CCCCGCGCCCTGTTAATTA 60.153 57.895 0.00 0.00 0.00 1.40
7711 8131 0.536460 CCCCGCGCCCTGTTAATTAT 60.536 55.000 0.00 0.00 0.00 1.28
7712 8132 1.270947 CCCCGCGCCCTGTTAATTATA 60.271 52.381 0.00 0.00 0.00 0.98
7713 8133 2.617021 CCCCGCGCCCTGTTAATTATAT 60.617 50.000 0.00 0.00 0.00 0.86
7714 8134 3.369681 CCCCGCGCCCTGTTAATTATATA 60.370 47.826 0.00 0.00 0.00 0.86
7715 8135 4.255301 CCCGCGCCCTGTTAATTATATAA 58.745 43.478 0.00 0.00 0.00 0.98
7716 8136 4.696402 CCCGCGCCCTGTTAATTATATAAA 59.304 41.667 0.00 0.00 0.00 1.40
7717 8137 5.355910 CCCGCGCCCTGTTAATTATATAAAT 59.644 40.000 0.00 0.00 0.00 1.40
7718 8138 6.255215 CCGCGCCCTGTTAATTATATAAATG 58.745 40.000 0.00 0.00 0.00 2.32
7719 8139 5.737290 CGCGCCCTGTTAATTATATAAATGC 59.263 40.000 0.00 0.00 0.00 3.56
7720 8140 6.403200 CGCGCCCTGTTAATTATATAAATGCT 60.403 38.462 0.00 0.00 0.00 3.79
7721 8141 7.201574 CGCGCCCTGTTAATTATATAAATGCTA 60.202 37.037 0.00 0.00 0.00 3.49
7722 8142 8.455682 GCGCCCTGTTAATTATATAAATGCTAA 58.544 33.333 0.00 0.00 0.00 3.09
7723 8143 9.988350 CGCCCTGTTAATTATATAAATGCTAAG 57.012 33.333 0.00 0.00 0.00 2.18
7736 8156 5.582689 AAATGCTAAGGGATTACTTGCAC 57.417 39.130 0.00 0.00 37.34 4.57
7737 8157 3.712016 TGCTAAGGGATTACTTGCACA 57.288 42.857 0.00 0.00 33.11 4.57
7738 8158 4.235079 TGCTAAGGGATTACTTGCACAT 57.765 40.909 0.00 0.00 33.11 3.21
7739 8159 3.947196 TGCTAAGGGATTACTTGCACATG 59.053 43.478 0.00 0.00 33.11 3.21
7740 8160 4.199310 GCTAAGGGATTACTTGCACATGA 58.801 43.478 0.00 0.00 32.02 3.07
7741 8161 4.640201 GCTAAGGGATTACTTGCACATGAA 59.360 41.667 0.00 0.00 32.02 2.57
7742 8162 5.300286 GCTAAGGGATTACTTGCACATGAAT 59.700 40.000 0.00 0.00 32.02 2.57
7743 8163 6.486657 GCTAAGGGATTACTTGCACATGAATA 59.513 38.462 0.00 0.00 32.02 1.75
7744 8164 7.013274 GCTAAGGGATTACTTGCACATGAATAA 59.987 37.037 0.00 0.00 32.02 1.40
7745 8165 7.902920 AAGGGATTACTTGCACATGAATAAT 57.097 32.000 0.00 0.00 0.00 1.28
7746 8166 7.902920 AGGGATTACTTGCACATGAATAATT 57.097 32.000 0.00 0.00 0.00 1.40
7747 8167 8.310122 AGGGATTACTTGCACATGAATAATTT 57.690 30.769 0.00 0.00 0.00 1.82
7748 8168 8.761689 AGGGATTACTTGCACATGAATAATTTT 58.238 29.630 0.00 0.00 0.00 1.82
7749 8169 9.034544 GGGATTACTTGCACATGAATAATTTTC 57.965 33.333 0.00 0.00 0.00 2.29
7750 8170 9.585099 GGATTACTTGCACATGAATAATTTTCA 57.415 29.630 0.00 5.81 0.00 2.69
7752 8172 9.926158 ATTACTTGCACATGAATAATTTTCACA 57.074 25.926 0.00 0.00 0.00 3.58
7753 8173 7.878477 ACTTGCACATGAATAATTTTCACAG 57.122 32.000 0.00 4.99 0.00 3.66
7754 8174 7.660112 ACTTGCACATGAATAATTTTCACAGA 58.340 30.769 0.00 0.00 0.00 3.41
7755 8175 8.143193 ACTTGCACATGAATAATTTTCACAGAA 58.857 29.630 0.00 0.00 0.00 3.02
7756 8176 7.872163 TGCACATGAATAATTTTCACAGAAC 57.128 32.000 0.00 0.00 0.00 3.01
7757 8177 7.660112 TGCACATGAATAATTTTCACAGAACT 58.340 30.769 0.00 0.00 0.00 3.01
7758 8178 7.595875 TGCACATGAATAATTTTCACAGAACTG 59.404 33.333 0.00 0.00 0.00 3.16
7759 8179 7.596248 GCACATGAATAATTTTCACAGAACTGT 59.404 33.333 0.00 1.32 46.17 3.55
7760 8180 9.467258 CACATGAATAATTTTCACAGAACTGTT 57.533 29.630 0.00 0.00 42.83 3.16
7761 8181 9.467258 ACATGAATAATTTTCACAGAACTGTTG 57.533 29.630 0.00 2.16 42.83 3.33
7762 8182 9.681692 CATGAATAATTTTCACAGAACTGTTGA 57.318 29.630 4.63 4.31 42.83 3.18
7766 8186 9.846248 AATAATTTTCACAGAACTGTTGATAGC 57.154 29.630 4.63 0.00 42.83 2.97
7767 8187 7.516198 AATTTTCACAGAACTGTTGATAGCT 57.484 32.000 4.63 0.00 42.83 3.32
7768 8188 8.621532 AATTTTCACAGAACTGTTGATAGCTA 57.378 30.769 4.63 0.00 42.83 3.32
7769 8189 7.421530 TTTTCACAGAACTGTTGATAGCTAC 57.578 36.000 4.63 0.00 42.83 3.58
7770 8190 5.722021 TCACAGAACTGTTGATAGCTACA 57.278 39.130 4.63 0.00 42.83 2.74
7772 8192 5.476945 TCACAGAACTGTTGATAGCTACAGA 59.523 40.000 25.57 2.46 46.41 3.41
7773 8193 6.015434 TCACAGAACTGTTGATAGCTACAGAA 60.015 38.462 25.57 0.00 46.41 3.02
7774 8194 6.815641 CACAGAACTGTTGATAGCTACAGAAT 59.184 38.462 25.57 15.09 46.41 2.40
7775 8195 7.009999 CACAGAACTGTTGATAGCTACAGAATC 59.990 40.741 25.57 20.97 46.41 2.52
7776 8196 6.198029 CAGAACTGTTGATAGCTACAGAATCG 59.802 42.308 25.57 15.19 46.41 3.34
7777 8197 5.836821 ACTGTTGATAGCTACAGAATCGA 57.163 39.130 25.57 0.64 46.41 3.59
7778 8198 6.398234 ACTGTTGATAGCTACAGAATCGAT 57.602 37.500 25.57 2.86 46.41 3.59
7779 8199 7.511959 ACTGTTGATAGCTACAGAATCGATA 57.488 36.000 25.57 1.45 46.41 2.92
7780 8200 7.364200 ACTGTTGATAGCTACAGAATCGATAC 58.636 38.462 25.57 4.43 46.41 2.24
7781 8201 6.678878 TGTTGATAGCTACAGAATCGATACC 58.321 40.000 0.00 0.00 0.00 2.73
7782 8202 6.264518 TGTTGATAGCTACAGAATCGATACCA 59.735 38.462 0.00 0.00 0.00 3.25
7783 8203 7.039714 TGTTGATAGCTACAGAATCGATACCAT 60.040 37.037 0.00 0.00 0.00 3.55
7784 8204 7.468141 TGATAGCTACAGAATCGATACCATT 57.532 36.000 0.00 0.00 0.00 3.16
7785 8205 7.896811 TGATAGCTACAGAATCGATACCATTT 58.103 34.615 0.00 0.00 0.00 2.32
7786 8206 8.029522 TGATAGCTACAGAATCGATACCATTTC 58.970 37.037 0.00 0.00 0.00 2.17
7787 8207 6.412362 AGCTACAGAATCGATACCATTTCT 57.588 37.500 0.00 0.00 0.00 2.52
7788 8208 6.219473 AGCTACAGAATCGATACCATTTCTG 58.781 40.000 18.17 18.17 46.63 3.02
7794 8214 8.066668 CAGAATCGATACCATTTCTGTACTTC 57.933 38.462 13.57 0.00 39.97 3.01
7795 8215 7.706607 CAGAATCGATACCATTTCTGTACTTCA 59.293 37.037 13.57 0.00 39.97 3.02
7796 8216 7.707035 AGAATCGATACCATTTCTGTACTTCAC 59.293 37.037 0.00 0.00 0.00 3.18
7797 8217 6.525578 TCGATACCATTTCTGTACTTCACT 57.474 37.500 0.00 0.00 0.00 3.41
7798 8218 6.561614 TCGATACCATTTCTGTACTTCACTC 58.438 40.000 0.00 0.00 0.00 3.51
7799 8219 5.749109 CGATACCATTTCTGTACTTCACTCC 59.251 44.000 0.00 0.00 0.00 3.85
7800 8220 4.974645 ACCATTTCTGTACTTCACTCCA 57.025 40.909 0.00 0.00 0.00 3.86
7801 8221 5.304686 ACCATTTCTGTACTTCACTCCAA 57.695 39.130 0.00 0.00 0.00 3.53
7802 8222 5.063880 ACCATTTCTGTACTTCACTCCAAC 58.936 41.667 0.00 0.00 0.00 3.77
7803 8223 4.455877 CCATTTCTGTACTTCACTCCAACC 59.544 45.833 0.00 0.00 0.00 3.77
7804 8224 4.764050 TTTCTGTACTTCACTCCAACCA 57.236 40.909 0.00 0.00 0.00 3.67
7805 8225 4.974645 TTCTGTACTTCACTCCAACCAT 57.025 40.909 0.00 0.00 0.00 3.55
7806 8226 4.271696 TCTGTACTTCACTCCAACCATG 57.728 45.455 0.00 0.00 0.00 3.66
7807 8227 3.901222 TCTGTACTTCACTCCAACCATGA 59.099 43.478 0.00 0.00 0.00 3.07
7808 8228 4.346709 TCTGTACTTCACTCCAACCATGAA 59.653 41.667 0.00 0.00 0.00 2.57
7809 8229 4.385825 TGTACTTCACTCCAACCATGAAC 58.614 43.478 0.00 0.00 0.00 3.18
7810 8230 3.576078 ACTTCACTCCAACCATGAACA 57.424 42.857 0.00 0.00 0.00 3.18
7811 8231 3.214328 ACTTCACTCCAACCATGAACAC 58.786 45.455 0.00 0.00 0.00 3.32
7812 8232 3.213506 CTTCACTCCAACCATGAACACA 58.786 45.455 0.00 0.00 0.00 3.72
7813 8233 3.507162 TCACTCCAACCATGAACACAT 57.493 42.857 0.00 0.00 0.00 3.21
7814 8234 3.831323 TCACTCCAACCATGAACACATT 58.169 40.909 0.00 0.00 0.00 2.71
7815 8235 3.569277 TCACTCCAACCATGAACACATTG 59.431 43.478 0.00 0.00 0.00 2.82
7816 8236 3.318839 CACTCCAACCATGAACACATTGT 59.681 43.478 0.00 0.00 0.00 2.71
7817 8237 3.569701 ACTCCAACCATGAACACATTGTC 59.430 43.478 0.00 0.00 0.00 3.18
7818 8238 3.560105 TCCAACCATGAACACATTGTCA 58.440 40.909 0.00 0.00 0.00 3.58
7819 8239 3.956848 TCCAACCATGAACACATTGTCAA 59.043 39.130 0.00 0.00 0.00 3.18
7820 8240 4.403752 TCCAACCATGAACACATTGTCAAA 59.596 37.500 0.00 0.00 0.00 2.69
7821 8241 4.507388 CCAACCATGAACACATTGTCAAAC 59.493 41.667 0.00 0.00 0.00 2.93
7822 8242 3.963665 ACCATGAACACATTGTCAAACG 58.036 40.909 0.00 0.00 0.00 3.60
7823 8243 3.380004 ACCATGAACACATTGTCAAACGT 59.620 39.130 0.00 0.00 0.00 3.99
7824 8244 3.730215 CCATGAACACATTGTCAAACGTG 59.270 43.478 14.00 14.00 35.48 4.49
7825 8245 2.791567 TGAACACATTGTCAAACGTGC 58.208 42.857 15.04 2.13 32.53 5.34
7826 8246 2.421775 TGAACACATTGTCAAACGTGCT 59.578 40.909 15.04 6.34 32.53 4.40
7827 8247 3.623510 TGAACACATTGTCAAACGTGCTA 59.376 39.130 15.04 3.48 32.53 3.49
7828 8248 3.878086 ACACATTGTCAAACGTGCTAG 57.122 42.857 15.04 0.00 32.53 3.42
7829 8249 3.462982 ACACATTGTCAAACGTGCTAGA 58.537 40.909 15.04 0.00 32.53 2.43
7830 8250 4.065088 ACACATTGTCAAACGTGCTAGAT 58.935 39.130 15.04 0.00 32.53 1.98
7831 8251 4.083855 ACACATTGTCAAACGTGCTAGATG 60.084 41.667 15.04 0.00 32.53 2.90
7832 8252 3.120199 ACATTGTCAAACGTGCTAGATGC 60.120 43.478 0.00 0.00 43.25 3.91
7833 8253 1.438651 TGTCAAACGTGCTAGATGCC 58.561 50.000 0.00 0.00 42.00 4.40
7834 8254 1.270571 TGTCAAACGTGCTAGATGCCA 60.271 47.619 0.00 0.00 42.00 4.92
7835 8255 1.128692 GTCAAACGTGCTAGATGCCAC 59.871 52.381 0.00 0.00 42.00 5.01
7836 8256 1.001974 TCAAACGTGCTAGATGCCACT 59.998 47.619 0.00 0.00 42.00 4.00
7837 8257 1.806542 CAAACGTGCTAGATGCCACTT 59.193 47.619 0.00 0.00 42.00 3.16
7838 8258 1.442769 AACGTGCTAGATGCCACTTG 58.557 50.000 0.00 0.00 42.00 3.16
7839 8259 0.321671 ACGTGCTAGATGCCACTTGT 59.678 50.000 0.00 0.00 42.00 3.16
7840 8260 1.548719 ACGTGCTAGATGCCACTTGTA 59.451 47.619 0.00 0.00 42.00 2.41
7841 8261 2.168521 ACGTGCTAGATGCCACTTGTAT 59.831 45.455 0.00 0.00 42.00 2.29
7842 8262 2.541346 CGTGCTAGATGCCACTTGTATG 59.459 50.000 0.00 0.00 42.00 2.39
7843 8263 2.289002 GTGCTAGATGCCACTTGTATGC 59.711 50.000 0.00 0.00 42.00 3.14
7844 8264 2.093021 TGCTAGATGCCACTTGTATGCA 60.093 45.455 0.00 0.00 42.00 3.96
7845 8265 2.547211 GCTAGATGCCACTTGTATGCAG 59.453 50.000 0.00 0.00 38.58 4.41
7846 8266 3.742327 GCTAGATGCCACTTGTATGCAGA 60.742 47.826 0.00 0.00 38.58 4.26
7847 8267 2.915349 AGATGCCACTTGTATGCAGAG 58.085 47.619 0.00 0.00 38.58 3.35
7848 8268 2.502947 AGATGCCACTTGTATGCAGAGA 59.497 45.455 0.00 0.00 38.58 3.10
7849 8269 3.136077 AGATGCCACTTGTATGCAGAGAT 59.864 43.478 0.00 0.00 38.58 2.75
7850 8270 4.346127 AGATGCCACTTGTATGCAGAGATA 59.654 41.667 0.00 0.00 38.58 1.98
7851 8271 4.063998 TGCCACTTGTATGCAGAGATAG 57.936 45.455 0.00 0.00 0.00 2.08
7852 8272 3.181462 TGCCACTTGTATGCAGAGATAGG 60.181 47.826 0.00 0.00 0.00 2.57
7853 8273 3.070159 GCCACTTGTATGCAGAGATAGGA 59.930 47.826 0.00 0.00 0.00 2.94
7854 8274 4.443457 GCCACTTGTATGCAGAGATAGGAA 60.443 45.833 0.00 0.00 0.00 3.36
7855 8275 5.674525 CCACTTGTATGCAGAGATAGGAAA 58.325 41.667 0.00 0.00 0.00 3.13
7856 8276 6.294473 CCACTTGTATGCAGAGATAGGAAAT 58.706 40.000 0.00 0.00 0.00 2.17
7857 8277 6.204301 CCACTTGTATGCAGAGATAGGAAATG 59.796 42.308 0.00 0.00 0.00 2.32
7858 8278 6.988580 CACTTGTATGCAGAGATAGGAAATGA 59.011 38.462 0.00 0.00 0.00 2.57
7859 8279 7.496920 CACTTGTATGCAGAGATAGGAAATGAA 59.503 37.037 0.00 0.00 0.00 2.57
7860 8280 8.216423 ACTTGTATGCAGAGATAGGAAATGAAT 58.784 33.333 0.00 0.00 0.00 2.57
7861 8281 9.716531 CTTGTATGCAGAGATAGGAAATGAATA 57.283 33.333 0.00 0.00 0.00 1.75
7863 8283 9.494271 TGTATGCAGAGATAGGAAATGAATAAC 57.506 33.333 0.00 0.00 0.00 1.89
7864 8284 9.717942 GTATGCAGAGATAGGAAATGAATAACT 57.282 33.333 0.00 0.00 0.00 2.24
7866 8286 8.668510 TGCAGAGATAGGAAATGAATAACTTC 57.331 34.615 0.00 0.00 0.00 3.01
7867 8287 8.489489 TGCAGAGATAGGAAATGAATAACTTCT 58.511 33.333 0.00 0.00 32.29 2.85
7868 8288 9.336171 GCAGAGATAGGAAATGAATAACTTCTT 57.664 33.333 0.00 0.00 32.29 2.52
7887 8307 9.660180 AACTTCTTATCTCAACTCAAGTAATCC 57.340 33.333 0.00 0.00 0.00 3.01
7888 8308 9.041354 ACTTCTTATCTCAACTCAAGTAATCCT 57.959 33.333 0.00 0.00 0.00 3.24
7889 8309 9.883142 CTTCTTATCTCAACTCAAGTAATCCTT 57.117 33.333 0.00 0.00 0.00 3.36
7902 8322 7.669438 CAAGTAATCCTTGTTTTATGCGATG 57.331 36.000 0.00 0.00 44.64 3.84
7903 8323 7.471721 CAAGTAATCCTTGTTTTATGCGATGA 58.528 34.615 0.00 0.00 44.64 2.92
7904 8324 7.624360 AGTAATCCTTGTTTTATGCGATGAA 57.376 32.000 0.00 0.00 0.00 2.57
7905 8325 7.472543 AGTAATCCTTGTTTTATGCGATGAAC 58.527 34.615 0.00 0.00 0.00 3.18
7906 8326 5.895636 ATCCTTGTTTTATGCGATGAACA 57.104 34.783 0.00 0.00 0.00 3.18
7907 8327 5.295431 TCCTTGTTTTATGCGATGAACAG 57.705 39.130 0.00 0.00 33.97 3.16
7908 8328 4.759693 TCCTTGTTTTATGCGATGAACAGT 59.240 37.500 0.00 0.00 33.97 3.55
7909 8329 5.935206 TCCTTGTTTTATGCGATGAACAGTA 59.065 36.000 0.00 0.00 33.97 2.74
7910 8330 6.597672 TCCTTGTTTTATGCGATGAACAGTAT 59.402 34.615 0.00 0.00 33.97 2.12
7911 8331 7.120579 TCCTTGTTTTATGCGATGAACAGTATT 59.879 33.333 0.00 0.00 33.97 1.89
7912 8332 7.429340 CCTTGTTTTATGCGATGAACAGTATTC 59.571 37.037 0.00 0.00 33.97 1.75
8326 8746 1.204941 GTTGGGTACTGCTCTGATCGT 59.795 52.381 0.00 0.00 0.00 3.73
8619 9039 4.560743 TGCGCTTGCCACTGACCA 62.561 61.111 9.73 0.00 38.03 4.02
8641 9061 1.371183 CACCGTCATGTGGACCTGT 59.629 57.895 12.69 0.00 43.95 4.00
8882 9303 3.438781 GTGCCGTGGATCAATGAACTAAA 59.561 43.478 0.00 0.00 0.00 1.85
8947 9368 3.942829 TCCATGTTAGGCTCAGAAGTTG 58.057 45.455 0.00 0.00 0.00 3.16
9169 9592 7.147514 TGGGTGTTAGTATTATCGTTGGGTTAT 60.148 37.037 0.00 0.00 0.00 1.89
9518 9945 9.639601 CATGTTATTACAGAGACTAGTTGAACA 57.360 33.333 0.00 0.00 37.77 3.18
9522 9949 3.305720 ACAGAGACTAGTTGAACACCCA 58.694 45.455 0.00 0.00 0.00 4.51
9690 10118 0.299003 GTGCTACGAGATTGAAGCGC 59.701 55.000 0.00 0.00 37.80 5.92
9808 10239 5.705609 ATAAGTCGCAACATTTTCTTGGT 57.294 34.783 0.00 0.00 0.00 3.67
9866 10297 2.253610 TGGTGTAGTTGGGAGTGTAGG 58.746 52.381 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.808414 AATGAGTTTCATCAGAGTCGGA 57.192 40.909 0.00 0.00 35.76 4.55
38 39 7.145985 GCGATGACAAGTTAGAGGTTATGATA 58.854 38.462 0.00 0.00 0.00 2.15
115 123 2.426024 TCTTCATAACCGGGAACTCGAG 59.574 50.000 11.84 11.84 0.00 4.04
137 145 5.241506 ACAATTTTGATCTCTTCGCCTTTCA 59.758 36.000 0.00 0.00 0.00 2.69
144 152 8.694394 GGAAAAAGAACAATTTTGATCTCTTCG 58.306 33.333 3.89 0.00 39.07 3.79
178 186 2.965671 AATACTGCATCCCATCCCAG 57.034 50.000 0.00 0.00 0.00 4.45
264 273 2.045885 TGAGGAGGAATGGGTCTAGGTT 59.954 50.000 0.00 0.00 0.00 3.50
387 397 0.249398 CGAGTAAGGTGGGAAGTGGG 59.751 60.000 0.00 0.00 0.00 4.61
390 400 0.320697 GTGCGAGTAAGGTGGGAAGT 59.679 55.000 0.00 0.00 0.00 3.01
434 444 1.218047 CAGGAATGAAGGTCGCCGA 59.782 57.895 0.00 0.00 0.00 5.54
448 458 1.381327 GAGTCCCCGTGATCCAGGA 60.381 63.158 5.24 0.00 0.00 3.86
500 521 4.046938 TGGATGAAGATCTACGAGTTGC 57.953 45.455 0.00 0.00 0.00 4.17
570 591 1.201965 GCGGCGAGAAAGATGAAGTTG 60.202 52.381 12.98 0.00 0.00 3.16
600 636 1.226974 TAGAACGCATGAGCCGAGC 60.227 57.895 0.00 0.00 37.52 5.03
606 642 2.673368 GAGTTTGGGTAGAACGCATGAG 59.327 50.000 0.00 0.00 40.81 2.90
630 666 2.360165 GGCGGAGAGGTTTCGTATTCTA 59.640 50.000 0.00 0.00 0.00 2.10
634 670 1.134788 CAAGGCGGAGAGGTTTCGTAT 60.135 52.381 0.00 0.00 0.00 3.06
636 672 1.004918 CAAGGCGGAGAGGTTTCGT 60.005 57.895 0.00 0.00 0.00 3.85
644 680 1.615124 TTGGGGATCAAGGCGGAGA 60.615 57.895 0.00 0.00 0.00 3.71
652 688 0.245539 GACGACGAGTTGGGGATCAA 59.754 55.000 0.00 0.00 0.00 2.57
654 690 0.245539 TTGACGACGAGTTGGGGATC 59.754 55.000 0.00 0.00 0.00 3.36
660 696 1.371267 TCGCCTTGACGACGAGTTG 60.371 57.895 0.00 0.00 37.09 3.16
701 737 0.324614 TTGCTTCTCTGAATCCGGCA 59.675 50.000 0.00 0.00 0.00 5.69
726 774 9.840427 ATGAAGTTTCTATAAATTTGTGTTCCG 57.160 29.630 0.00 0.00 0.00 4.30
755 814 0.968405 TGATTTCCAAACTGGGCAGC 59.032 50.000 0.00 0.00 38.32 5.25
793 852 6.769341 TCATCATCATGATCGGAAGAACAAAT 59.231 34.615 4.86 0.00 46.17 2.32
905 965 1.392534 GGTGGGAGGAGAGGAGGAA 59.607 63.158 0.00 0.00 0.00 3.36
1042 1376 1.381872 ATCTGGTGACGGGGAGAGG 60.382 63.158 0.00 0.00 37.31 3.69
1735 2093 2.477189 CGTTCAGAACAAAAACCGCTGT 60.477 45.455 13.82 0.00 0.00 4.40
1736 2094 2.108700 CGTTCAGAACAAAAACCGCTG 58.891 47.619 13.82 0.00 0.00 5.18
1737 2095 1.741145 ACGTTCAGAACAAAAACCGCT 59.259 42.857 13.82 0.00 0.00 5.52
1756 2116 7.331934 TCACACTAAGAGCAACATATTTCTCAC 59.668 37.037 0.00 0.00 0.00 3.51
1768 2128 1.347707 CAGGGGTCACACTAAGAGCAA 59.652 52.381 0.00 0.00 35.30 3.91
1771 2131 1.338200 GCACAGGGGTCACACTAAGAG 60.338 57.143 0.00 0.00 0.00 2.85
1810 2171 0.749091 TGCTGGCGAATCATCCAAGG 60.749 55.000 0.00 0.00 30.98 3.61
1926 2287 4.012895 CTTCACGCGTGCACCACC 62.013 66.667 33.63 0.00 0.00 4.61
1943 2304 0.804933 GGTCGTACCGGTCAAGCATC 60.805 60.000 12.40 0.00 0.00 3.91
1959 2320 2.433970 CAGAGAGGATCAAGGGAAGGTC 59.566 54.545 0.00 0.00 37.82 3.85
1967 2328 5.300286 ACCAAAACAAACAGAGAGGATCAAG 59.700 40.000 0.00 0.00 37.82 3.02
2040 2402 2.249413 CTGGTCAATCAGAGCCCGCT 62.249 60.000 0.00 0.00 44.10 5.52
2162 2524 1.412710 GACTGCGAATAGATCCCACCA 59.587 52.381 0.00 0.00 0.00 4.17
2190 2552 5.721000 TCCCATTTTGACCATTTGAATAGCT 59.279 36.000 0.00 0.00 0.00 3.32
2231 2593 2.242043 CCTTCAAAGGGCTGATGTTGT 58.758 47.619 0.50 0.00 42.66 3.32
2502 2864 1.209261 TGCTCGGCATACATCTGGAAA 59.791 47.619 0.00 0.00 31.71 3.13
2527 2889 3.372206 GCTGTGTGCAGAAACATAGGTAG 59.628 47.826 0.00 0.00 45.28 3.18
2741 3108 5.431731 AGGATGGGATTTACAAGACATGGTA 59.568 40.000 0.00 0.00 0.00 3.25
2788 3155 6.698008 TGAATTGTTGCTCGAATGGATAAT 57.302 33.333 0.00 0.00 0.00 1.28
2975 3342 7.028962 CCAATAATGCAACGAATTTCAAGAGA 58.971 34.615 0.00 0.00 0.00 3.10
3063 3430 4.035675 GGCGAGAAGAGAAATGTAAATGGG 59.964 45.833 0.00 0.00 0.00 4.00
3064 3431 4.878397 AGGCGAGAAGAGAAATGTAAATGG 59.122 41.667 0.00 0.00 0.00 3.16
3102 3469 2.292061 ACCTCACTGAGTTACCCGGTAT 60.292 50.000 0.00 0.00 0.00 2.73
3106 3473 1.616865 TCAACCTCACTGAGTTACCCG 59.383 52.381 5.32 0.00 0.00 5.28
3339 3712 3.875727 CGGACTTCATTCAGATTGCAGAT 59.124 43.478 0.00 0.00 0.00 2.90
3462 3836 4.096081 GCTGACCCAGAATCATTTTCTGAG 59.904 45.833 15.12 6.18 46.57 3.35
3468 3842 2.905415 TGGCTGACCCAGAATCATTT 57.095 45.000 0.00 0.00 39.18 2.32
3496 3870 6.419484 AATATCATCGACTATGTCACCCAA 57.581 37.500 0.00 0.00 36.89 4.12
3762 4136 0.959372 CCTTCTTGCTGTCAGGCTGG 60.959 60.000 15.73 0.00 0.00 4.85
4029 4403 5.357596 AGGAATACTCGTACAAGGAAGACTC 59.642 44.000 0.00 0.00 0.00 3.36
4268 4642 0.242017 GGCTTGCACACTCCAATGTC 59.758 55.000 0.00 0.00 0.00 3.06
4354 4728 5.332743 AGGTGTCAAAATATGTGGTGGAAT 58.667 37.500 0.00 0.00 0.00 3.01
4363 4737 6.118170 ACTCCTGATGAGGTGTCAAAATATG 58.882 40.000 0.00 0.00 41.39 1.78
4374 4748 0.415429 ACCTGGACTCCTGATGAGGT 59.585 55.000 0.00 1.19 46.01 3.85
4812 5186 1.134699 TCTAGAGCCATTTCAGCCGTG 60.135 52.381 0.00 0.00 0.00 4.94
4813 5187 1.195115 TCTAGAGCCATTTCAGCCGT 58.805 50.000 0.00 0.00 0.00 5.68
4863 5237 1.467342 GCGGTAACCAACACTTCATCC 59.533 52.381 0.00 0.00 0.00 3.51
4937 5317 2.027653 TCCGTTGCCACATCAGATACAA 60.028 45.455 0.00 0.00 0.00 2.41
4956 5336 5.591877 ACCATGAGAAGTGAGCATTTTATCC 59.408 40.000 0.00 0.00 0.00 2.59
5211 5592 8.031277 GCATAGAGTTGATTGATTTTGAAGGTT 58.969 33.333 0.00 0.00 0.00 3.50
5571 5952 1.690352 AGGACTTTTTCGACTTCCCGA 59.310 47.619 0.00 0.00 36.70 5.14
5704 6085 6.719370 TCAAAGGGTTTACAGCATTATCAAGT 59.281 34.615 0.00 0.00 0.00 3.16
5767 6148 0.402121 GACTCTTGGAGGCCTTTGGT 59.598 55.000 6.77 0.14 30.04 3.67
5806 6187 5.811399 TGATATTCAAAGGGTTTACAGCG 57.189 39.130 0.00 0.00 0.00 5.18
5837 6218 0.819582 CCATTGGAAAGCCGCTTCAT 59.180 50.000 5.98 0.00 36.79 2.57
5880 6261 7.944729 ACAGCATTATCAAGAGTTTTGGTAT 57.055 32.000 0.00 0.00 0.00 2.73
6587 6968 3.555168 CCAAAGGTAGAGTCAGTGGTCAC 60.555 52.174 0.00 0.00 0.00 3.67
6810 7193 7.516198 ACAGTTCAATTTCAGCTGTCTTAAT 57.484 32.000 14.67 6.92 35.78 1.40
6869 7253 5.986501 ACTACTCCCTCTGTTCACTTTAG 57.013 43.478 0.00 0.00 0.00 1.85
6870 7254 6.742559 AAACTACTCCCTCTGTTCACTTTA 57.257 37.500 0.00 0.00 0.00 1.85
6877 7261 6.711194 GCTTCTTAAAAACTACTCCCTCTGTT 59.289 38.462 0.00 0.00 0.00 3.16
6880 7264 6.689663 AGCTTCTTAAAAACTACTCCCTCT 57.310 37.500 0.00 0.00 0.00 3.69
7196 7611 8.606602 GGCAAAGATTAAACATGATTTCAATCC 58.393 33.333 0.00 0.00 34.50 3.01
7354 7769 9.683069 ACAGAAATCACAGTTGAATGTTTATTC 57.317 29.630 0.00 0.00 42.45 1.75
7486 7901 5.625251 GTCAATTCTTCGCCAGCATATATG 58.375 41.667 8.45 8.45 0.00 1.78
7667 8087 4.524053 GGGGTTGGACCTAAAATCAGTAG 58.476 47.826 0.00 0.00 38.64 2.57
7691 8111 2.612095 TAATTAACAGGGCGCGGGGG 62.612 60.000 8.83 0.00 0.00 5.40
7692 8112 0.536460 ATAATTAACAGGGCGCGGGG 60.536 55.000 8.83 0.00 0.00 5.73
7693 8113 2.172851 TATAATTAACAGGGCGCGGG 57.827 50.000 8.83 0.00 0.00 6.13
7694 8114 5.866335 TTTATATAATTAACAGGGCGCGG 57.134 39.130 8.83 0.00 0.00 6.46
7695 8115 5.737290 GCATTTATATAATTAACAGGGCGCG 59.263 40.000 0.00 0.00 0.00 6.86
7696 8116 6.852664 AGCATTTATATAATTAACAGGGCGC 58.147 36.000 0.00 0.00 0.00 6.53
7697 8117 9.988350 CTTAGCATTTATATAATTAACAGGGCG 57.012 33.333 0.00 0.00 0.00 6.13
7710 8130 9.014297 GTGCAAGTAATCCCTTAGCATTTATAT 57.986 33.333 0.00 0.00 33.92 0.86
7711 8131 7.996066 TGTGCAAGTAATCCCTTAGCATTTATA 59.004 33.333 0.00 0.00 33.92 0.98
7712 8132 6.833416 TGTGCAAGTAATCCCTTAGCATTTAT 59.167 34.615 0.00 0.00 33.92 1.40
7713 8133 6.184068 TGTGCAAGTAATCCCTTAGCATTTA 58.816 36.000 0.00 0.00 33.92 1.40
7714 8134 5.016173 TGTGCAAGTAATCCCTTAGCATTT 58.984 37.500 0.00 0.00 33.92 2.32
7715 8135 4.599041 TGTGCAAGTAATCCCTTAGCATT 58.401 39.130 0.00 0.00 33.92 3.56
7716 8136 4.235079 TGTGCAAGTAATCCCTTAGCAT 57.765 40.909 0.00 0.00 33.92 3.79
7717 8137 3.712016 TGTGCAAGTAATCCCTTAGCA 57.288 42.857 0.00 0.00 0.00 3.49
7718 8138 4.199310 TCATGTGCAAGTAATCCCTTAGC 58.801 43.478 0.00 0.00 0.00 3.09
7719 8139 6.949352 ATTCATGTGCAAGTAATCCCTTAG 57.051 37.500 0.00 0.00 0.00 2.18
7720 8140 8.995027 ATTATTCATGTGCAAGTAATCCCTTA 57.005 30.769 0.00 0.00 0.00 2.69
7721 8141 7.902920 ATTATTCATGTGCAAGTAATCCCTT 57.097 32.000 0.00 0.00 0.00 3.95
7722 8142 7.902920 AATTATTCATGTGCAAGTAATCCCT 57.097 32.000 0.00 0.00 0.00 4.20
7723 8143 8.947055 AAAATTATTCATGTGCAAGTAATCCC 57.053 30.769 0.00 0.00 0.00 3.85
7724 8144 9.585099 TGAAAATTATTCATGTGCAAGTAATCC 57.415 29.630 0.00 0.00 0.00 3.01
7726 8146 9.926158 TGTGAAAATTATTCATGTGCAAGTAAT 57.074 25.926 0.00 0.00 0.00 1.89
7727 8147 9.409312 CTGTGAAAATTATTCATGTGCAAGTAA 57.591 29.630 0.00 0.00 0.00 2.24
7728 8148 8.791675 TCTGTGAAAATTATTCATGTGCAAGTA 58.208 29.630 0.00 0.00 0.00 2.24
7729 8149 7.660112 TCTGTGAAAATTATTCATGTGCAAGT 58.340 30.769 0.00 0.00 0.00 3.16
7730 8150 8.430063 GTTCTGTGAAAATTATTCATGTGCAAG 58.570 33.333 0.00 0.00 0.00 4.01
7731 8151 8.143193 AGTTCTGTGAAAATTATTCATGTGCAA 58.857 29.630 0.00 0.00 0.00 4.08
7732 8152 7.595875 CAGTTCTGTGAAAATTATTCATGTGCA 59.404 33.333 0.00 0.00 0.00 4.57
7733 8153 7.596248 ACAGTTCTGTGAAAATTATTCATGTGC 59.404 33.333 4.58 0.00 0.00 4.57
7734 8154 9.467258 AACAGTTCTGTGAAAATTATTCATGTG 57.533 29.630 6.22 0.00 0.00 3.21
7735 8155 9.467258 CAACAGTTCTGTGAAAATTATTCATGT 57.533 29.630 6.22 4.08 0.00 3.21
7736 8156 9.681692 TCAACAGTTCTGTGAAAATTATTCATG 57.318 29.630 6.22 0.00 0.00 3.07
7740 8160 9.846248 GCTATCAACAGTTCTGTGAAAATTATT 57.154 29.630 6.22 0.00 0.00 1.40
7741 8161 9.236006 AGCTATCAACAGTTCTGTGAAAATTAT 57.764 29.630 6.22 0.00 0.00 1.28
7742 8162 8.621532 AGCTATCAACAGTTCTGTGAAAATTA 57.378 30.769 6.22 0.00 0.00 1.40
7743 8163 7.516198 AGCTATCAACAGTTCTGTGAAAATT 57.484 32.000 6.22 0.00 0.00 1.82
7744 8164 7.661437 TGTAGCTATCAACAGTTCTGTGAAAAT 59.339 33.333 6.22 1.76 0.00 1.82
7745 8165 6.989759 TGTAGCTATCAACAGTTCTGTGAAAA 59.010 34.615 6.22 0.00 0.00 2.29
7746 8166 6.521162 TGTAGCTATCAACAGTTCTGTGAAA 58.479 36.000 6.22 0.00 0.00 2.69
7747 8167 6.015434 TCTGTAGCTATCAACAGTTCTGTGAA 60.015 38.462 12.86 0.00 42.96 3.18
7748 8168 5.476945 TCTGTAGCTATCAACAGTTCTGTGA 59.523 40.000 12.86 6.84 42.96 3.58
7749 8169 5.714047 TCTGTAGCTATCAACAGTTCTGTG 58.286 41.667 12.86 1.98 42.96 3.66
7750 8170 5.984695 TCTGTAGCTATCAACAGTTCTGT 57.015 39.130 12.86 0.00 42.96 3.41
7751 8171 6.198029 CGATTCTGTAGCTATCAACAGTTCTG 59.802 42.308 12.86 0.00 42.96 3.02
7752 8172 6.095580 TCGATTCTGTAGCTATCAACAGTTCT 59.904 38.462 12.86 1.45 42.96 3.01
7753 8173 6.266323 TCGATTCTGTAGCTATCAACAGTTC 58.734 40.000 12.86 10.45 42.96 3.01
7754 8174 6.208988 TCGATTCTGTAGCTATCAACAGTT 57.791 37.500 12.86 3.97 42.96 3.16
7755 8175 5.836821 TCGATTCTGTAGCTATCAACAGT 57.163 39.130 12.86 0.00 42.96 3.55
7756 8176 6.804295 GGTATCGATTCTGTAGCTATCAACAG 59.196 42.308 1.71 7.88 43.63 3.16
7757 8177 6.264518 TGGTATCGATTCTGTAGCTATCAACA 59.735 38.462 1.71 0.00 0.00 3.33
7758 8178 6.678878 TGGTATCGATTCTGTAGCTATCAAC 58.321 40.000 1.71 0.00 0.00 3.18
7759 8179 6.894339 TGGTATCGATTCTGTAGCTATCAA 57.106 37.500 1.71 0.00 0.00 2.57
7760 8180 7.468141 AATGGTATCGATTCTGTAGCTATCA 57.532 36.000 1.71 0.00 0.00 2.15
7761 8181 8.247562 AGAAATGGTATCGATTCTGTAGCTATC 58.752 37.037 1.71 0.00 31.25 2.08
7762 8182 8.031864 CAGAAATGGTATCGATTCTGTAGCTAT 58.968 37.037 1.71 0.00 42.28 2.97
7763 8183 7.371159 CAGAAATGGTATCGATTCTGTAGCTA 58.629 38.462 1.71 0.00 42.28 3.32
7764 8184 6.219473 CAGAAATGGTATCGATTCTGTAGCT 58.781 40.000 1.71 0.00 42.28 3.32
7765 8185 6.459257 CAGAAATGGTATCGATTCTGTAGC 57.541 41.667 1.71 0.00 42.28 3.58
7770 8190 7.707035 GTGAAGTACAGAAATGGTATCGATTCT 59.293 37.037 1.71 0.00 32.55 2.40
7771 8191 7.707035 AGTGAAGTACAGAAATGGTATCGATTC 59.293 37.037 1.71 0.00 0.00 2.52
7772 8192 7.556844 AGTGAAGTACAGAAATGGTATCGATT 58.443 34.615 1.71 0.00 0.00 3.34
7773 8193 7.113658 AGTGAAGTACAGAAATGGTATCGAT 57.886 36.000 2.16 2.16 0.00 3.59
7774 8194 6.405508 GGAGTGAAGTACAGAAATGGTATCGA 60.406 42.308 0.00 0.00 0.00 3.59
7775 8195 5.749109 GGAGTGAAGTACAGAAATGGTATCG 59.251 44.000 0.00 0.00 0.00 2.92
7776 8196 6.640518 TGGAGTGAAGTACAGAAATGGTATC 58.359 40.000 0.00 0.00 0.00 2.24
7777 8197 6.620877 TGGAGTGAAGTACAGAAATGGTAT 57.379 37.500 0.00 0.00 0.00 2.73
7778 8198 6.228258 GTTGGAGTGAAGTACAGAAATGGTA 58.772 40.000 0.00 0.00 0.00 3.25
7779 8199 4.974645 TGGAGTGAAGTACAGAAATGGT 57.025 40.909 0.00 0.00 0.00 3.55
7780 8200 4.455877 GGTTGGAGTGAAGTACAGAAATGG 59.544 45.833 0.00 0.00 0.00 3.16
7781 8201 5.063204 TGGTTGGAGTGAAGTACAGAAATG 58.937 41.667 0.00 0.00 0.00 2.32
7782 8202 5.304686 TGGTTGGAGTGAAGTACAGAAAT 57.695 39.130 0.00 0.00 0.00 2.17
7783 8203 4.764050 TGGTTGGAGTGAAGTACAGAAA 57.236 40.909 0.00 0.00 0.00 2.52
7784 8204 4.346709 TCATGGTTGGAGTGAAGTACAGAA 59.653 41.667 0.00 0.00 0.00 3.02
7785 8205 3.901222 TCATGGTTGGAGTGAAGTACAGA 59.099 43.478 0.00 0.00 0.00 3.41
7786 8206 4.271696 TCATGGTTGGAGTGAAGTACAG 57.728 45.455 0.00 0.00 0.00 2.74
7787 8207 4.141597 TGTTCATGGTTGGAGTGAAGTACA 60.142 41.667 0.00 0.00 32.98 2.90
7788 8208 4.213482 GTGTTCATGGTTGGAGTGAAGTAC 59.787 45.833 0.00 0.00 32.98 2.73
7789 8209 4.141597 TGTGTTCATGGTTGGAGTGAAGTA 60.142 41.667 0.00 0.00 32.98 2.24
7790 8210 3.214328 GTGTTCATGGTTGGAGTGAAGT 58.786 45.455 0.00 0.00 32.98 3.01
7791 8211 3.213506 TGTGTTCATGGTTGGAGTGAAG 58.786 45.455 0.00 0.00 32.98 3.02
7792 8212 3.289407 TGTGTTCATGGTTGGAGTGAA 57.711 42.857 0.00 0.00 0.00 3.18
7793 8213 3.507162 ATGTGTTCATGGTTGGAGTGA 57.493 42.857 0.00 0.00 32.51 3.41
7794 8214 3.318839 ACAATGTGTTCATGGTTGGAGTG 59.681 43.478 0.00 0.00 34.87 3.51
7795 8215 3.565307 ACAATGTGTTCATGGTTGGAGT 58.435 40.909 0.00 0.00 34.87 3.85
7796 8216 3.569277 TGACAATGTGTTCATGGTTGGAG 59.431 43.478 0.00 0.00 38.23 3.86
7797 8217 3.560105 TGACAATGTGTTCATGGTTGGA 58.440 40.909 0.00 0.00 38.23 3.53
7798 8218 4.319139 TTGACAATGTGTTCATGGTTGG 57.681 40.909 0.00 0.00 38.23 3.77
7799 8219 4.206814 CGTTTGACAATGTGTTCATGGTTG 59.793 41.667 0.00 0.00 38.23 3.77
7800 8220 4.142271 ACGTTTGACAATGTGTTCATGGTT 60.142 37.500 0.00 0.00 38.23 3.67
7801 8221 3.380004 ACGTTTGACAATGTGTTCATGGT 59.620 39.130 0.00 0.00 40.55 3.55
7802 8222 3.730215 CACGTTTGACAATGTGTTCATGG 59.270 43.478 11.14 0.00 42.75 3.66
7803 8223 4.934623 CACGTTTGACAATGTGTTCATG 57.065 40.909 11.14 0.00 42.75 3.07
7810 8230 3.120199 GCATCTAGCACGTTTGACAATGT 60.120 43.478 0.00 0.00 44.79 2.71
7811 8231 3.419915 GCATCTAGCACGTTTGACAATG 58.580 45.455 0.00 0.00 44.79 2.82
7812 8232 3.747099 GCATCTAGCACGTTTGACAAT 57.253 42.857 0.00 0.00 44.79 2.71
7824 8244 2.547211 CTGCATACAAGTGGCATCTAGC 59.453 50.000 0.00 0.00 44.65 3.42
7825 8245 4.056740 CTCTGCATACAAGTGGCATCTAG 58.943 47.826 0.00 0.00 36.87 2.43
7826 8246 3.706086 TCTCTGCATACAAGTGGCATCTA 59.294 43.478 0.00 0.00 36.87 1.98
7827 8247 2.502947 TCTCTGCATACAAGTGGCATCT 59.497 45.455 0.00 0.00 36.87 2.90
7828 8248 2.910199 TCTCTGCATACAAGTGGCATC 58.090 47.619 0.00 0.00 36.87 3.91
7829 8249 3.572632 ATCTCTGCATACAAGTGGCAT 57.427 42.857 0.00 0.00 36.87 4.40
7830 8250 3.181462 CCTATCTCTGCATACAAGTGGCA 60.181 47.826 0.00 0.00 35.96 4.92
7831 8251 3.070159 TCCTATCTCTGCATACAAGTGGC 59.930 47.826 0.00 0.00 0.00 5.01
7832 8252 4.944619 TCCTATCTCTGCATACAAGTGG 57.055 45.455 0.00 0.00 0.00 4.00
7833 8253 6.988580 TCATTTCCTATCTCTGCATACAAGTG 59.011 38.462 0.00 0.00 0.00 3.16
7834 8254 7.129457 TCATTTCCTATCTCTGCATACAAGT 57.871 36.000 0.00 0.00 0.00 3.16
7835 8255 8.618702 ATTCATTTCCTATCTCTGCATACAAG 57.381 34.615 0.00 0.00 0.00 3.16
7837 8257 9.494271 GTTATTCATTTCCTATCTCTGCATACA 57.506 33.333 0.00 0.00 0.00 2.29
7838 8258 9.717942 AGTTATTCATTTCCTATCTCTGCATAC 57.282 33.333 0.00 0.00 0.00 2.39
7840 8260 9.282569 GAAGTTATTCATTTCCTATCTCTGCAT 57.717 33.333 0.00 0.00 35.37 3.96
7841 8261 8.489489 AGAAGTTATTCATTTCCTATCTCTGCA 58.511 33.333 0.00 0.00 37.94 4.41
7842 8262 8.900983 AGAAGTTATTCATTTCCTATCTCTGC 57.099 34.615 0.00 0.00 37.94 4.26
7861 8281 9.660180 GGATTACTTGAGTTGAGATAAGAAGTT 57.340 33.333 0.00 0.00 0.00 2.66
7862 8282 9.041354 AGGATTACTTGAGTTGAGATAAGAAGT 57.959 33.333 0.00 0.00 0.00 3.01
7863 8283 9.883142 AAGGATTACTTGAGTTGAGATAAGAAG 57.117 33.333 0.00 0.00 38.21 2.85
7879 8299 7.624360 TCATCGCATAAAACAAGGATTACTT 57.376 32.000 0.00 0.00 41.00 2.24
7880 8300 7.120579 TGTTCATCGCATAAAACAAGGATTACT 59.879 33.333 0.00 0.00 0.00 2.24
7881 8301 7.247728 TGTTCATCGCATAAAACAAGGATTAC 58.752 34.615 0.00 0.00 0.00 1.89
7882 8302 7.120579 ACTGTTCATCGCATAAAACAAGGATTA 59.879 33.333 0.00 0.00 31.75 1.75
7883 8303 6.071952 ACTGTTCATCGCATAAAACAAGGATT 60.072 34.615 0.00 0.00 31.75 3.01
7884 8304 5.415701 ACTGTTCATCGCATAAAACAAGGAT 59.584 36.000 0.00 0.00 31.75 3.24
7885 8305 4.759693 ACTGTTCATCGCATAAAACAAGGA 59.240 37.500 0.00 0.00 31.75 3.36
7886 8306 5.046910 ACTGTTCATCGCATAAAACAAGG 57.953 39.130 0.00 0.00 31.75 3.61
7887 8307 8.315554 GAATACTGTTCATCGCATAAAACAAG 57.684 34.615 0.00 0.00 31.75 3.16
8297 8717 1.955208 GCAGTACCCAACCCAATCCTG 60.955 57.143 0.00 0.00 0.00 3.86
8298 8718 0.331616 GCAGTACCCAACCCAATCCT 59.668 55.000 0.00 0.00 0.00 3.24
8299 8719 0.331616 AGCAGTACCCAACCCAATCC 59.668 55.000 0.00 0.00 0.00 3.01
8300 8720 1.282157 AGAGCAGTACCCAACCCAATC 59.718 52.381 0.00 0.00 0.00 2.67
8301 8721 1.004745 CAGAGCAGTACCCAACCCAAT 59.995 52.381 0.00 0.00 0.00 3.16
8302 8722 0.400213 CAGAGCAGTACCCAACCCAA 59.600 55.000 0.00 0.00 0.00 4.12
8303 8723 0.472925 TCAGAGCAGTACCCAACCCA 60.473 55.000 0.00 0.00 0.00 4.51
8306 8726 1.204941 ACGATCAGAGCAGTACCCAAC 59.795 52.381 0.00 0.00 0.00 3.77
8311 8731 3.217599 TCACAACGATCAGAGCAGTAC 57.782 47.619 0.00 0.00 0.00 2.73
8326 8746 9.581099 GTTTAAAAGAAGAATGAAGGTTCACAA 57.419 29.630 0.00 0.00 40.49 3.33
8509 8929 7.005062 ACGTCAGTCAATTTAGCAACATATC 57.995 36.000 0.00 0.00 0.00 1.63
8560 8980 6.407299 CCCAAGCAAATTACAGGAAATAGCAT 60.407 38.462 0.00 0.00 0.00 3.79
8641 9061 3.694043 TGAGTACTGGCTATTTGTGCA 57.306 42.857 0.00 0.00 0.00 4.57
8807 9228 9.674068 GTGAAGGAGTAAAAGAGAAATATCCTT 57.326 33.333 2.93 2.93 46.01 3.36
8882 9303 9.167311 CATTACCTCAGTAATAAGCTTGACTTT 57.833 33.333 9.86 0.28 45.46 2.66
8947 9368 8.276325 CAGACGAGAAAGTATAATGTAAATGCC 58.724 37.037 0.00 0.00 0.00 4.40
8966 9387 9.469807 AATAAGAATGATAGCTAAACAGACGAG 57.530 33.333 0.00 0.00 0.00 4.18
9169 9592 3.223435 TGTCCAACTCCGGCAAAAATTA 58.777 40.909 0.00 0.00 0.00 1.40
9518 9945 3.069946 CCATGGCAACGCATGGGT 61.070 61.111 10.03 10.03 43.36 4.51
9522 9949 2.288642 ATCCTCCCATGGCAACGCAT 62.289 55.000 6.09 0.00 42.51 4.73
9808 10239 1.681538 TAAGGCTTTTGTCGGCAACA 58.318 45.000 0.00 0.00 33.82 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.