Multiple sequence alignment - TraesCS5D01G051100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G051100 chr5D 100.000 5158 0 0 1 5158 49098990 49104147 0.000000e+00 9526.0
1 TraesCS5D01G051100 chr5D 80.282 568 85 20 3574 4126 454182740 454183295 2.240000e-108 403.0
2 TraesCS5D01G051100 chr5D 83.193 119 19 1 3619 3736 84870070 84870188 1.960000e-19 108.0
3 TraesCS5D01G051100 chr5B 90.848 3289 183 61 127 3365 51824397 51827617 0.000000e+00 4298.0
4 TraesCS5D01G051100 chr5B 95.387 1279 56 3 3508 4784 51828069 51829346 0.000000e+00 2032.0
5 TraesCS5D01G051100 chr5B 79.685 571 86 18 3574 4126 555154257 555154815 8.100000e-103 385.0
6 TraesCS5D01G051100 chr5B 82.237 304 27 12 44 330 51794756 51795049 2.400000e-58 237.0
7 TraesCS5D01G051100 chr5B 83.193 119 19 1 3619 3736 91931546 91931664 1.960000e-19 108.0
8 TraesCS5D01G051100 chr5B 100.000 28 0 0 4520 4547 429189583 429189610 9.000000e-03 52.8
9 TraesCS5D01G051100 chr5A 94.258 1672 71 12 3408 5072 38720896 38722549 0.000000e+00 2532.0
10 TraesCS5D01G051100 chr5A 95.737 1337 53 2 2033 3365 38719353 38720689 0.000000e+00 2150.0
11 TraesCS5D01G051100 chr5A 85.583 1845 137 66 178 1972 38717434 38719199 0.000000e+00 1814.0
12 TraesCS5D01G051100 chr5A 84.034 119 18 1 3619 3736 79264092 79264210 4.220000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G051100 chr5D 49098990 49104147 5157 False 9526.000000 9526 100.000000 1 5158 1 chr5D.!!$F1 5157
1 TraesCS5D01G051100 chr5D 454182740 454183295 555 False 403.000000 403 80.282000 3574 4126 1 chr5D.!!$F3 552
2 TraesCS5D01G051100 chr5B 51824397 51829346 4949 False 3165.000000 4298 93.117500 127 4784 2 chr5B.!!$F5 4657
3 TraesCS5D01G051100 chr5B 555154257 555154815 558 False 385.000000 385 79.685000 3574 4126 1 chr5B.!!$F4 552
4 TraesCS5D01G051100 chr5A 38717434 38722549 5115 False 2165.333333 2532 91.859333 178 5072 3 chr5A.!!$F2 4894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 354 0.037326 GCACTGTGGTACTAGCAGCA 60.037 55.0 10.21 0.0 33.87 4.41 F
593 630 0.040351 CACCACCCTCTCCTCTCTCA 59.960 60.0 0.00 0.0 0.00 3.27 F
755 808 0.105039 CTCGTCCCCCATTGCTAGAC 59.895 60.0 0.00 0.0 0.00 2.59 F
1086 1144 0.179051 CATGCTCTGCTCCCTCCTTC 60.179 60.0 0.00 0.0 0.00 3.46 F
1217 1281 0.473694 TTGTCCTCTTCCTGGCCTCA 60.474 55.0 3.32 0.0 0.00 3.86 F
3071 3279 0.110328 ACACGCTCTACAACGTCGAG 60.110 55.0 0.00 0.0 41.32 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 1269 0.323178 AACAGCATGAGGCCAGGAAG 60.323 55.000 5.01 0.0 46.50 3.46 R
2357 2562 0.678048 GGTGGATGAGGTTGTCCTGC 60.678 60.000 0.00 0.0 45.24 4.85 R
2612 2820 0.179032 TGAAGTTCCCGAGCTTTGCA 60.179 50.000 0.00 0.0 31.89 4.08 R
3071 3279 1.672356 AAGGATCCTGCGCACACAC 60.672 57.895 17.02 0.0 0.00 3.82 R
3284 3492 1.145945 AGACCATCATCTAGAGGCCGA 59.854 52.381 0.00 0.0 0.00 5.54 R
5122 5771 0.032416 TACCCCACCTCTACCTCTGC 60.032 60.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.553144 TCTAGGACCCCGTGCTTT 57.447 55.556 0.00 0.00 35.47 3.51
18 19 2.768046 TCTAGGACCCCGTGCTTTT 58.232 52.632 0.00 0.00 35.47 2.27
19 20 1.941377 TCTAGGACCCCGTGCTTTTA 58.059 50.000 0.00 0.00 35.47 1.52
20 21 1.551883 TCTAGGACCCCGTGCTTTTAC 59.448 52.381 0.00 0.00 35.47 2.01
21 22 0.614812 TAGGACCCCGTGCTTTTACC 59.385 55.000 0.00 0.00 35.47 2.85
22 23 1.131928 AGGACCCCGTGCTTTTACCT 61.132 55.000 0.00 0.00 27.37 3.08
23 24 0.675837 GGACCCCGTGCTTTTACCTC 60.676 60.000 0.00 0.00 0.00 3.85
24 25 0.675837 GACCCCGTGCTTTTACCTCC 60.676 60.000 0.00 0.00 0.00 4.30
25 26 1.131928 ACCCCGTGCTTTTACCTCCT 61.132 55.000 0.00 0.00 0.00 3.69
26 27 0.037734 CCCCGTGCTTTTACCTCCTT 59.962 55.000 0.00 0.00 0.00 3.36
27 28 1.546998 CCCCGTGCTTTTACCTCCTTT 60.547 52.381 0.00 0.00 0.00 3.11
28 29 2.235891 CCCGTGCTTTTACCTCCTTTT 58.764 47.619 0.00 0.00 0.00 2.27
29 30 2.626266 CCCGTGCTTTTACCTCCTTTTT 59.374 45.455 0.00 0.00 0.00 1.94
30 31 3.305131 CCCGTGCTTTTACCTCCTTTTTC 60.305 47.826 0.00 0.00 0.00 2.29
31 32 3.568430 CCGTGCTTTTACCTCCTTTTTCT 59.432 43.478 0.00 0.00 0.00 2.52
32 33 4.758165 CCGTGCTTTTACCTCCTTTTTCTA 59.242 41.667 0.00 0.00 0.00 2.10
33 34 5.334646 CCGTGCTTTTACCTCCTTTTTCTAC 60.335 44.000 0.00 0.00 0.00 2.59
34 35 5.469084 CGTGCTTTTACCTCCTTTTTCTACT 59.531 40.000 0.00 0.00 0.00 2.57
35 36 6.347483 CGTGCTTTTACCTCCTTTTTCTACTC 60.347 42.308 0.00 0.00 0.00 2.59
36 37 5.699458 TGCTTTTACCTCCTTTTTCTACTCG 59.301 40.000 0.00 0.00 0.00 4.18
37 38 5.390673 GCTTTTACCTCCTTTTTCTACTCGC 60.391 44.000 0.00 0.00 0.00 5.03
38 39 4.877378 TTACCTCCTTTTTCTACTCGCA 57.123 40.909 0.00 0.00 0.00 5.10
39 40 3.764237 ACCTCCTTTTTCTACTCGCAA 57.236 42.857 0.00 0.00 0.00 4.85
40 41 3.400255 ACCTCCTTTTTCTACTCGCAAC 58.600 45.455 0.00 0.00 0.00 4.17
41 42 2.742589 CCTCCTTTTTCTACTCGCAACC 59.257 50.000 0.00 0.00 0.00 3.77
42 43 2.742589 CTCCTTTTTCTACTCGCAACCC 59.257 50.000 0.00 0.00 0.00 4.11
43 44 2.105134 TCCTTTTTCTACTCGCAACCCA 59.895 45.455 0.00 0.00 0.00 4.51
44 45 2.882137 CCTTTTTCTACTCGCAACCCAA 59.118 45.455 0.00 0.00 0.00 4.12
45 46 3.316868 CCTTTTTCTACTCGCAACCCAAA 59.683 43.478 0.00 0.00 0.00 3.28
46 47 4.537015 CTTTTTCTACTCGCAACCCAAAG 58.463 43.478 0.00 0.00 0.00 2.77
47 48 1.519408 TTCTACTCGCAACCCAAAGC 58.481 50.000 0.00 0.00 0.00 3.51
48 49 0.394938 TCTACTCGCAACCCAAAGCA 59.605 50.000 0.00 0.00 0.00 3.91
49 50 1.003118 TCTACTCGCAACCCAAAGCAT 59.997 47.619 0.00 0.00 0.00 3.79
50 51 2.235155 TCTACTCGCAACCCAAAGCATA 59.765 45.455 0.00 0.00 0.00 3.14
51 52 1.165270 ACTCGCAACCCAAAGCATAC 58.835 50.000 0.00 0.00 0.00 2.39
52 53 1.164411 CTCGCAACCCAAAGCATACA 58.836 50.000 0.00 0.00 0.00 2.29
53 54 1.131126 CTCGCAACCCAAAGCATACAG 59.869 52.381 0.00 0.00 0.00 2.74
54 55 0.881118 CGCAACCCAAAGCATACAGT 59.119 50.000 0.00 0.00 0.00 3.55
55 56 2.080693 CGCAACCCAAAGCATACAGTA 58.919 47.619 0.00 0.00 0.00 2.74
56 57 2.159572 CGCAACCCAAAGCATACAGTAC 60.160 50.000 0.00 0.00 0.00 2.73
57 58 2.817258 GCAACCCAAAGCATACAGTACA 59.183 45.455 0.00 0.00 0.00 2.90
58 59 3.443681 GCAACCCAAAGCATACAGTACAT 59.556 43.478 0.00 0.00 0.00 2.29
59 60 4.082245 GCAACCCAAAGCATACAGTACATT 60.082 41.667 0.00 0.00 0.00 2.71
60 61 5.124776 GCAACCCAAAGCATACAGTACATTA 59.875 40.000 0.00 0.00 0.00 1.90
61 62 6.677920 GCAACCCAAAGCATACAGTACATTAG 60.678 42.308 0.00 0.00 0.00 1.73
62 63 6.062258 ACCCAAAGCATACAGTACATTAGT 57.938 37.500 0.00 0.00 0.00 2.24
63 64 7.190335 ACCCAAAGCATACAGTACATTAGTA 57.810 36.000 0.00 0.00 0.00 1.82
64 65 7.272978 ACCCAAAGCATACAGTACATTAGTAG 58.727 38.462 0.00 0.00 0.00 2.57
65 66 7.125204 ACCCAAAGCATACAGTACATTAGTAGA 59.875 37.037 0.00 0.00 0.00 2.59
66 67 7.985184 CCCAAAGCATACAGTACATTAGTAGAA 59.015 37.037 0.00 0.00 0.00 2.10
67 68 9.378551 CCAAAGCATACAGTACATTAGTAGAAA 57.621 33.333 0.00 0.00 0.00 2.52
71 72 9.587772 AGCATACAGTACATTAGTAGAAAAGTG 57.412 33.333 0.00 0.00 0.00 3.16
72 73 9.367444 GCATACAGTACATTAGTAGAAAAGTGT 57.633 33.333 0.00 0.00 0.00 3.55
83 84 8.752766 TTAGTAGAAAAGTGTAAATCTGACCG 57.247 34.615 0.00 0.00 0.00 4.79
84 85 6.164176 AGTAGAAAAGTGTAAATCTGACCGG 58.836 40.000 0.00 0.00 0.00 5.28
85 86 5.223449 AGAAAAGTGTAAATCTGACCGGA 57.777 39.130 9.46 0.00 0.00 5.14
86 87 5.805728 AGAAAAGTGTAAATCTGACCGGAT 58.194 37.500 9.46 0.00 0.00 4.18
87 88 6.238648 AGAAAAGTGTAAATCTGACCGGATT 58.761 36.000 9.46 0.00 37.51 3.01
88 89 6.715264 AGAAAAGTGTAAATCTGACCGGATTT 59.285 34.615 9.46 17.72 44.76 2.17
89 90 5.880054 AAGTGTAAATCTGACCGGATTTG 57.120 39.130 21.02 0.00 43.22 2.32
90 91 5.160607 AGTGTAAATCTGACCGGATTTGA 57.839 39.130 21.02 0.41 43.22 2.69
91 92 5.745227 AGTGTAAATCTGACCGGATTTGAT 58.255 37.500 21.02 3.15 43.22 2.57
92 93 5.817816 AGTGTAAATCTGACCGGATTTGATC 59.182 40.000 21.02 13.75 43.22 2.92
93 94 5.007724 GTGTAAATCTGACCGGATTTGATCC 59.992 44.000 21.02 10.47 43.22 3.36
107 108 2.303163 TGATCCACCGGTATCAAACG 57.697 50.000 16.11 0.00 0.00 3.60
139 140 3.635268 CTGCCCCTCCCTCTTGCAC 62.635 68.421 0.00 0.00 0.00 4.57
146 147 2.089980 CCTCCCTCTTGCACAAGAATG 58.910 52.381 13.70 8.15 45.75 2.67
148 149 3.618351 CTCCCTCTTGCACAAGAATGAT 58.382 45.455 13.70 0.00 45.75 2.45
151 152 3.128242 CCCTCTTGCACAAGAATGATGAC 59.872 47.826 13.70 0.00 45.75 3.06
165 166 1.298859 GATGACGAGGTGTTGCCCAC 61.299 60.000 0.00 0.00 43.74 4.61
197 198 2.360483 TGACCACACAAACAATGCGAAT 59.640 40.909 0.00 0.00 0.00 3.34
212 213 5.700722 ATGCGAATGAATGAATGCTGTAT 57.299 34.783 0.00 0.00 0.00 2.29
270 276 3.067106 ACTGCCGTAGATCACAAACAAG 58.933 45.455 0.00 0.00 0.00 3.16
316 323 9.319143 AGACTGTTAATGTCACTAAGATAATGC 57.681 33.333 12.13 0.00 36.94 3.56
333 342 0.678684 TGCCATGGATCTGCACTGTG 60.679 55.000 18.40 2.76 0.00 3.66
345 354 0.037326 GCACTGTGGTACTAGCAGCA 60.037 55.000 10.21 0.00 33.87 4.41
374 386 3.376078 GACGCTACCGGGTCCACA 61.376 66.667 6.32 0.00 44.68 4.17
417 430 2.356313 AGTTCTCACTGCACCGCG 60.356 61.111 0.00 0.00 0.00 6.46
445 458 4.348168 GCCCCAGATTGGATTAGAGTAGAA 59.652 45.833 0.00 0.00 40.96 2.10
447 460 5.509840 CCCCAGATTGGATTAGAGTAGAACG 60.510 48.000 0.00 0.00 40.96 3.95
448 461 4.985409 CCAGATTGGATTAGAGTAGAACGC 59.015 45.833 0.00 0.00 40.96 4.84
449 462 4.677378 CAGATTGGATTAGAGTAGAACGCG 59.323 45.833 3.53 3.53 0.00 6.01
450 463 4.338682 AGATTGGATTAGAGTAGAACGCGT 59.661 41.667 5.58 5.58 0.00 6.01
470 483 4.567159 GCGTAGGTAGATCTCCAACAAAAG 59.433 45.833 0.00 0.00 0.00 2.27
516 552 1.340114 GGAGCATTCCCCTCTTCGTTT 60.340 52.381 0.00 0.00 37.53 3.60
517 553 2.437413 GAGCATTCCCCTCTTCGTTTT 58.563 47.619 0.00 0.00 0.00 2.43
518 554 2.420372 GAGCATTCCCCTCTTCGTTTTC 59.580 50.000 0.00 0.00 0.00 2.29
519 555 1.130561 GCATTCCCCTCTTCGTTTTCG 59.869 52.381 0.00 0.00 45.64 3.46
520 556 2.423577 CATTCCCCTCTTCGTTTTCGT 58.576 47.619 0.00 0.00 44.46 3.85
521 557 2.625695 TTCCCCTCTTCGTTTTCGTT 57.374 45.000 0.00 0.00 44.46 3.85
593 630 0.040351 CACCACCCTCTCCTCTCTCA 59.960 60.000 0.00 0.00 0.00 3.27
598 635 1.589399 CCCTCTCCTCTCTCACCCCT 61.589 65.000 0.00 0.00 0.00 4.79
599 636 0.338120 CCTCTCCTCTCTCACCCCTT 59.662 60.000 0.00 0.00 0.00 3.95
600 637 1.687996 CCTCTCCTCTCTCACCCCTTC 60.688 61.905 0.00 0.00 0.00 3.46
601 638 1.287739 CTCTCCTCTCTCACCCCTTCT 59.712 57.143 0.00 0.00 0.00 2.85
602 639 1.719378 TCTCCTCTCTCACCCCTTCTT 59.281 52.381 0.00 0.00 0.00 2.52
603 640 2.112691 TCTCCTCTCTCACCCCTTCTTT 59.887 50.000 0.00 0.00 0.00 2.52
604 641 2.235898 CTCCTCTCTCACCCCTTCTTTG 59.764 54.545 0.00 0.00 0.00 2.77
605 642 1.981495 CCTCTCTCACCCCTTCTTTGT 59.019 52.381 0.00 0.00 0.00 2.83
645 691 1.592223 CCGGTCTCTCGCCTTCTTT 59.408 57.895 0.00 0.00 0.00 2.52
648 694 1.067495 CGGTCTCTCGCCTTCTTTTCT 60.067 52.381 0.00 0.00 0.00 2.52
725 778 1.746991 CTTTCTCCTCCGCCTTGCC 60.747 63.158 0.00 0.00 0.00 4.52
755 808 0.105039 CTCGTCCCCCATTGCTAGAC 59.895 60.000 0.00 0.00 0.00 2.59
768 821 1.227664 CTAGACCTCGAGCCCCAGA 59.772 63.158 6.99 0.00 0.00 3.86
771 824 1.219393 GACCTCGAGCCCCAGAAAG 59.781 63.158 6.99 0.00 0.00 2.62
777 830 1.377856 GAGCCCCAGAAAGCCTGAC 60.378 63.158 0.00 0.00 45.78 3.51
795 848 4.005650 CTGACAAATTTCTAGCCTCTGCA 58.994 43.478 0.00 0.00 41.13 4.41
801 854 1.644509 TTCTAGCCTCTGCACCTTCA 58.355 50.000 0.00 0.00 41.13 3.02
802 855 0.898320 TCTAGCCTCTGCACCTTCAC 59.102 55.000 0.00 0.00 41.13 3.18
803 856 0.610174 CTAGCCTCTGCACCTTCACA 59.390 55.000 0.00 0.00 41.13 3.58
804 857 1.209019 CTAGCCTCTGCACCTTCACAT 59.791 52.381 0.00 0.00 41.13 3.21
842 895 3.992643 TGCAATGGTGATGTTTTCTTGG 58.007 40.909 0.00 0.00 0.00 3.61
851 904 4.761739 GTGATGTTTTCTTGGTCCATCTCA 59.238 41.667 0.00 0.00 34.44 3.27
855 908 0.250234 TTCTTGGTCCATCTCAGGCG 59.750 55.000 0.00 0.00 0.00 5.52
872 925 3.508840 GCGGGGCGTTGATTGGAG 61.509 66.667 0.00 0.00 0.00 3.86
873 926 2.267642 CGGGGCGTTGATTGGAGA 59.732 61.111 0.00 0.00 0.00 3.71
903 956 3.296709 CTGCGGAGTGGCGGTTACT 62.297 63.158 0.00 0.00 34.56 2.24
920 975 3.797507 CTTGGCTGGGGTGTGCTGT 62.798 63.158 0.00 0.00 0.00 4.40
923 978 2.985847 GCTGGGGTGTGCTGTTCC 60.986 66.667 0.00 0.00 0.00 3.62
926 981 2.343475 CTGGGGTGTGCTGTTCCTGT 62.343 60.000 0.00 0.00 0.00 4.00
927 982 1.600916 GGGGTGTGCTGTTCCTGTC 60.601 63.158 0.00 0.00 0.00 3.51
928 983 1.600916 GGGTGTGCTGTTCCTGTCC 60.601 63.158 0.00 0.00 0.00 4.02
930 985 1.227556 GTGTGCTGTTCCTGTCCGT 60.228 57.895 0.00 0.00 0.00 4.69
931 986 0.814010 GTGTGCTGTTCCTGTCCGTT 60.814 55.000 0.00 0.00 0.00 4.44
973 1030 2.494677 CGGGAGTCAGATCCGTTCT 58.505 57.895 0.00 0.00 40.56 3.01
980 1037 1.825474 GTCAGATCCGTTCTTCCCTCA 59.175 52.381 0.00 0.00 29.93 3.86
1080 1138 2.203181 GCTCCATGCTCTGCTCCC 60.203 66.667 0.00 0.00 38.95 4.30
1086 1144 0.179051 CATGCTCTGCTCCCTCCTTC 60.179 60.000 0.00 0.00 0.00 3.46
1193 1257 2.494073 GGCCGACATTAAACAATTGGGA 59.506 45.455 10.83 0.00 0.00 4.37
1195 1259 3.442273 GCCGACATTAAACAATTGGGAGA 59.558 43.478 10.83 0.00 0.00 3.71
1205 1269 2.290577 ACAATTGGGAGAGCTTGTCCTC 60.291 50.000 10.83 4.10 34.16 3.71
1217 1281 0.473694 TTGTCCTCTTCCTGGCCTCA 60.474 55.000 3.32 0.00 0.00 3.86
1297 1365 3.326297 GTGTTTCAAATGGGGATTTGGGA 59.674 43.478 7.48 0.00 40.79 4.37
1307 1375 0.734889 GGATTTGGGAGCACATGACG 59.265 55.000 0.00 0.00 0.00 4.35
1391 1474 1.089920 GTCTGCACCCACATTGCTAG 58.910 55.000 0.00 0.00 40.86 3.42
1394 1477 2.093500 TCTGCACCCACATTGCTAGTAG 60.093 50.000 0.00 0.00 40.86 2.57
1439 1525 3.131400 TGAAGCGCTAGGGTTTTTGTTTT 59.869 39.130 12.05 0.00 36.25 2.43
1448 1534 3.847184 AGGGTTTTTGTTTTCCCCTTTCA 59.153 39.130 0.00 0.00 43.24 2.69
1505 1591 3.706086 AGGTTTGGTGAGTTTGAAATGCT 59.294 39.130 0.00 0.00 0.00 3.79
1590 1685 5.105310 AGCGACCTTCTTGCTCTTTTATAGA 60.105 40.000 0.00 0.00 33.90 1.98
1615 1711 2.076863 GTAGAAGCAATGCCGTCTGTT 58.923 47.619 16.49 0.00 0.00 3.16
1628 1728 5.109210 TGCCGTCTGTTTATAGATTCTGTG 58.891 41.667 0.00 0.00 0.00 3.66
1668 1769 9.193806 AGGATATGAAACAATGCTTATCAGTTT 57.806 29.630 0.00 0.00 35.33 2.66
1677 1778 9.463443 AACAATGCTTATCAGTTTTCACTTTAC 57.537 29.630 0.00 0.00 0.00 2.01
1698 1800 9.667107 CTTTACCATCTAGTTAAACATGGAAGA 57.333 33.333 11.73 0.00 38.52 2.87
1716 1818 7.962964 TGGAAGATGTTCTTTTACACTACTG 57.037 36.000 2.24 0.00 36.73 2.74
1776 1881 5.192327 ACTCTGCAAGCCAAAATATATGC 57.808 39.130 0.00 0.00 0.00 3.14
1814 1919 0.681243 GACCATCTTCTTGTGGGCCC 60.681 60.000 17.59 17.59 37.57 5.80
1841 1946 1.131638 TCTGCACAACTGGACTTCCT 58.868 50.000 0.00 0.00 36.82 3.36
1934 2040 9.820725 CTACTATAGTATAGTAGCCCACTGTAG 57.179 40.741 30.83 15.52 40.10 2.74
1976 2087 6.481644 AGCAAGATATTGTAGCTTAGCAAGAC 59.518 38.462 7.07 1.90 31.74 3.01
1977 2088 6.481644 GCAAGATATTGTAGCTTAGCAAGACT 59.518 38.462 7.07 0.00 31.74 3.24
2001 2112 7.392673 ACTTTGTGATGATAAGAAGCAAGACAT 59.607 33.333 0.00 0.00 0.00 3.06
2002 2113 8.791327 TTTGTGATGATAAGAAGCAAGACATA 57.209 30.769 0.00 0.00 0.00 2.29
2003 2114 8.429493 TTGTGATGATAAGAAGCAAGACATAG 57.571 34.615 0.00 0.00 0.00 2.23
2006 2117 7.708322 GTGATGATAAGAAGCAAGACATAGTCA 59.292 37.037 0.00 0.00 34.60 3.41
2007 2118 7.924947 TGATGATAAGAAGCAAGACATAGTCAG 59.075 37.037 0.00 0.00 34.60 3.51
2008 2119 6.577103 TGATAAGAAGCAAGACATAGTCAGG 58.423 40.000 0.00 0.00 34.60 3.86
2009 2120 6.381133 TGATAAGAAGCAAGACATAGTCAGGA 59.619 38.462 0.00 0.00 34.60 3.86
2010 2121 5.690464 AAGAAGCAAGACATAGTCAGGAT 57.310 39.130 0.00 0.00 34.60 3.24
2013 2124 6.815089 AGAAGCAAGACATAGTCAGGATAAG 58.185 40.000 0.00 0.00 34.60 1.73
2016 2127 6.815089 AGCAAGACATAGTCAGGATAAGAAG 58.185 40.000 0.00 0.00 34.60 2.85
2017 2128 5.465056 GCAAGACATAGTCAGGATAAGAAGC 59.535 44.000 0.00 0.00 34.60 3.86
2018 2129 6.577103 CAAGACATAGTCAGGATAAGAAGCA 58.423 40.000 0.00 0.00 34.60 3.91
2019 2130 6.798427 AGACATAGTCAGGATAAGAAGCAA 57.202 37.500 0.00 0.00 34.60 3.91
2021 2132 7.624549 AGACATAGTCAGGATAAGAAGCAAAA 58.375 34.615 0.00 0.00 34.60 2.44
2050 2254 8.142994 TCTGTTTAAAGAAAGAGCACTTACAG 57.857 34.615 11.99 11.99 36.20 2.74
2057 2261 6.262193 AGAAAGAGCACTTACAGACTACTC 57.738 41.667 0.00 0.00 35.05 2.59
2064 2268 4.590918 CACTTACAGACTACTCCCTCTCA 58.409 47.826 0.00 0.00 0.00 3.27
2112 2316 7.251281 GTTGATATTTACTGGCTGTCCTTTTC 58.749 38.462 0.00 0.00 0.00 2.29
2180 2385 2.027385 GCCATCTTGGGAAGGTTGATC 58.973 52.381 0.00 0.00 38.19 2.92
2193 2398 5.363939 GAAGGTTGATCGAGGAGAATTCAT 58.636 41.667 8.44 0.00 0.00 2.57
2270 2475 1.807142 GAGTTAGTGGCAAGGTTCTGC 59.193 52.381 0.00 0.00 41.85 4.26
2357 2562 2.343843 CGAGATGACAGAAGAAACAGCG 59.656 50.000 0.00 0.00 0.00 5.18
2363 2568 0.514691 CAGAAGAAACAGCGCAGGAC 59.485 55.000 11.47 0.00 0.00 3.85
2408 2613 9.665264 GAAATGTTCTTTAACCAAGTAGTTCTG 57.335 33.333 0.00 0.00 34.49 3.02
2465 2673 0.835941 GTGATGTCCTCCCTCATGCT 59.164 55.000 0.00 0.00 0.00 3.79
2528 2736 1.233019 CCAAGGCTAGCATTGATCCG 58.767 55.000 36.45 19.80 39.72 4.18
2612 2820 1.841277 TGGAATGGTATTAGCACGGGT 59.159 47.619 0.00 0.00 0.00 5.28
2780 2988 1.343069 AGTGTCTCCCAGGACTGAAC 58.657 55.000 0.00 0.00 37.16 3.18
2996 3204 0.962356 AGAAAAGGGTCGGCATGCAG 60.962 55.000 21.36 16.69 0.00 4.41
3065 3273 2.157668 CACAATGGACACGCTCTACAAC 59.842 50.000 0.00 0.00 0.00 3.32
3071 3279 0.110328 ACACGCTCTACAACGTCGAG 60.110 55.000 0.00 0.00 41.32 4.04
3209 3417 2.877168 CAAGCTGATTGATGGCTACCTC 59.123 50.000 0.00 0.00 41.83 3.85
3284 3492 1.004044 ACTGCTTTGCCTGAGTATGCT 59.996 47.619 0.00 0.00 0.00 3.79
3296 3504 2.224892 TGAGTATGCTCGGCCTCTAGAT 60.225 50.000 0.00 0.00 44.48 1.98
3302 3510 1.626686 CTCGGCCTCTAGATGATGGT 58.373 55.000 0.00 0.00 0.00 3.55
3346 3554 8.780249 TGTATACTTGAAGGTAAACTTTTGAGC 58.220 33.333 4.17 0.00 40.21 4.26
3350 3558 3.317993 TGAAGGTAAACTTTTGAGCCTGC 59.682 43.478 0.00 0.00 40.21 4.85
3352 3560 2.887152 AGGTAAACTTTTGAGCCTGCTG 59.113 45.455 0.00 0.00 0.00 4.41
3365 3573 4.216257 TGAGCCTGCTGTTTATCTGAAAAC 59.784 41.667 0.00 7.87 39.35 2.43
3367 3575 4.768968 AGCCTGCTGTTTATCTGAAAACAT 59.231 37.500 14.17 2.28 45.58 2.71
3368 3576 5.098211 GCCTGCTGTTTATCTGAAAACATC 58.902 41.667 14.17 11.97 45.58 3.06
3387 4005 5.858381 ACATCATCAGTGACACTAGTGTTT 58.142 37.500 28.49 15.00 45.05 2.83
3421 4040 4.929819 TCTTCAGTTAAGTTTTTGCCCC 57.070 40.909 0.00 0.00 36.51 5.80
3432 4051 3.071457 AGTTTTTGCCCCAGAATTGAAGG 59.929 43.478 0.00 0.00 0.00 3.46
3456 4075 5.494618 CACATTTGCACTTGTTTTGACATG 58.505 37.500 0.00 0.00 0.00 3.21
3461 4080 2.282290 GCACTTGTTTTGACATGCACAC 59.718 45.455 0.00 0.00 33.27 3.82
3470 4089 5.512753 TTTGACATGCACACTGTTAATGT 57.487 34.783 6.29 6.29 34.28 2.71
3477 4096 7.261325 ACATGCACACTGTTAATGTTGTTTAA 58.739 30.769 0.00 0.00 0.00 1.52
3479 4098 7.922505 TGCACACTGTTAATGTTGTTTAATC 57.077 32.000 0.00 0.00 0.00 1.75
3503 4122 7.696755 TCTTTTCCATAATCATCACATTGTCG 58.303 34.615 0.00 0.00 0.00 4.35
3513 4132 1.275010 TCACATTGTCGCTCTTAGCCA 59.725 47.619 0.00 0.00 38.18 4.75
3516 4135 1.662629 CATTGTCGCTCTTAGCCACTG 59.337 52.381 0.00 0.00 38.18 3.66
3557 4176 3.070476 TCACCATTGCTGATGCTGTTA 57.930 42.857 0.00 0.00 40.48 2.41
3569 4188 5.049129 GCTGATGCTGTTAAGTCTTGTTCTT 60.049 40.000 0.00 0.00 36.03 2.52
3770 4389 2.362369 CGGGTGCCTGATGGTCTCT 61.362 63.158 0.00 0.00 35.27 3.10
3881 4500 2.671682 GTGAGGGAGAACCAGGCC 59.328 66.667 0.00 0.00 43.89 5.19
3909 4528 3.136123 GCATGGACAGCATGCGGT 61.136 61.111 23.79 23.79 44.59 5.68
4163 4806 2.290916 CACCATTGATGCATGAGCTCTC 59.709 50.000 16.19 4.01 42.74 3.20
4342 4985 5.481473 AGATGGAACCAGCAATGTAATGTTT 59.519 36.000 11.62 0.00 34.38 2.83
4433 5078 3.450457 TCAGGCATTCACAAACACCTTTT 59.550 39.130 0.00 0.00 0.00 2.27
4494 5139 3.129871 CCTGCTGCATCTCTAGCTAAAC 58.870 50.000 1.31 0.00 40.52 2.01
4587 5232 6.235664 TGTGAGTGTATTTTAGGGAAAGTCC 58.764 40.000 0.00 0.00 35.23 3.85
4599 5245 0.178961 GAAAGTCCCCAAAGCCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
4693 5339 6.588204 TGCTTTCTGTTTTTGTCTACTCCTA 58.412 36.000 0.00 0.00 0.00 2.94
4754 5401 5.607939 TTTAGCGTGGGATGAAGATCTTA 57.392 39.130 8.25 0.00 0.00 2.10
4762 5409 4.041321 TGGGATGAAGATCTTATGGCTCAG 59.959 45.833 8.25 0.00 0.00 3.35
4778 5425 2.636830 CTCAGGGCGTCAATTGAGAAT 58.363 47.619 8.80 0.00 39.46 2.40
4802 5449 4.336889 TCAGAGTTGTAGAAACACAGGG 57.663 45.455 0.00 0.00 34.61 4.45
4841 5488 8.875803 CGTAGTAATATGTTTTTCAGTTGGCTA 58.124 33.333 0.00 0.00 0.00 3.93
4847 5494 9.606631 AATATGTTTTTCAGTTGGCTAACAAAA 57.393 25.926 15.86 10.79 41.58 2.44
4849 5496 7.913674 TGTTTTTCAGTTGGCTAACAAAAAT 57.086 28.000 19.62 0.00 41.58 1.82
4875 5522 7.466746 TTTTTCTATGATCTTTGTTGGAGGG 57.533 36.000 0.00 0.00 0.00 4.30
4876 5523 4.778213 TCTATGATCTTTGTTGGAGGGG 57.222 45.455 0.00 0.00 0.00 4.79
4877 5524 2.149973 ATGATCTTTGTTGGAGGGGC 57.850 50.000 0.00 0.00 0.00 5.80
4878 5525 0.039618 TGATCTTTGTTGGAGGGGCC 59.960 55.000 0.00 0.00 37.10 5.80
4900 5547 7.667219 GGGCCAGATTTATTCATCTTTGATAGA 59.333 37.037 4.39 0.00 37.28 1.98
4924 5571 9.846248 AGAAATACTCAAATGTGTTTGCTAATC 57.154 29.630 0.00 0.00 43.47 1.75
4926 5573 4.475944 ACTCAAATGTGTTTGCTAATCGC 58.524 39.130 0.00 0.00 43.47 4.58
4931 5578 1.165270 GTGTTTGCTAATCGCCAGGT 58.835 50.000 0.00 0.00 38.05 4.00
4956 5603 2.875933 TGAAATTCTTTTGAGCGTCGGT 59.124 40.909 0.00 0.00 0.00 4.69
4970 5617 1.069500 CGTCGGTCAATTTCCGCTTTT 60.069 47.619 12.37 0.00 46.49 2.27
4971 5618 2.315901 GTCGGTCAATTTCCGCTTTTG 58.684 47.619 12.37 0.00 46.49 2.44
4972 5619 1.059942 CGGTCAATTTCCGCTTTTGC 58.940 50.000 6.00 0.00 41.48 3.68
4983 5631 2.216203 GCTTTTGCGTGGTTGAAGC 58.784 52.632 0.00 0.00 36.35 3.86
4988 5636 2.062361 TTGCGTGGTTGAAGCTGCAG 62.062 55.000 10.11 10.11 31.70 4.41
5020 5669 1.003839 TGTGAGGAATGCCGACCAC 60.004 57.895 6.13 6.13 39.96 4.16
5072 5721 3.616935 CGATAGCGAGTCCGAAACA 57.383 52.632 0.00 0.00 40.82 2.83
5073 5722 1.189403 CGATAGCGAGTCCGAAACAC 58.811 55.000 0.00 0.00 40.82 3.32
5074 5723 1.202154 CGATAGCGAGTCCGAAACACT 60.202 52.381 0.00 0.00 40.82 3.55
5075 5724 2.186076 GATAGCGAGTCCGAAACACTG 58.814 52.381 0.00 0.00 38.22 3.66
5076 5725 1.241165 TAGCGAGTCCGAAACACTGA 58.759 50.000 0.00 0.00 38.22 3.41
5077 5726 0.039074 AGCGAGTCCGAAACACTGAG 60.039 55.000 0.00 0.00 38.22 3.35
5078 5727 1.009389 GCGAGTCCGAAACACTGAGG 61.009 60.000 0.00 0.00 38.22 3.86
5079 5728 0.388649 CGAGTCCGAAACACTGAGGG 60.389 60.000 0.00 0.00 38.22 4.30
5080 5729 0.966920 GAGTCCGAAACACTGAGGGA 59.033 55.000 0.00 0.00 0.00 4.20
5081 5730 1.343465 GAGTCCGAAACACTGAGGGAA 59.657 52.381 0.00 0.00 0.00 3.97
5082 5731 1.344763 AGTCCGAAACACTGAGGGAAG 59.655 52.381 0.00 0.00 0.00 3.46
5083 5732 0.685097 TCCGAAACACTGAGGGAAGG 59.315 55.000 0.00 0.00 0.00 3.46
5084 5733 0.321653 CCGAAACACTGAGGGAAGGG 60.322 60.000 0.00 0.00 0.00 3.95
5085 5734 0.955919 CGAAACACTGAGGGAAGGGC 60.956 60.000 0.00 0.00 0.00 5.19
5086 5735 0.955919 GAAACACTGAGGGAAGGGCG 60.956 60.000 0.00 0.00 0.00 6.13
5087 5736 2.411765 AAACACTGAGGGAAGGGCGG 62.412 60.000 0.00 0.00 0.00 6.13
5088 5737 4.101448 CACTGAGGGAAGGGCGGG 62.101 72.222 0.00 0.00 0.00 6.13
5131 5780 3.465990 CCACATGTGGCAGAGGTAG 57.534 57.895 31.13 5.26 44.73 3.18
5132 5781 0.904649 CCACATGTGGCAGAGGTAGA 59.095 55.000 31.13 0.00 44.73 2.59
5133 5782 1.134580 CCACATGTGGCAGAGGTAGAG 60.135 57.143 31.13 3.96 44.73 2.43
5134 5783 1.134580 CACATGTGGCAGAGGTAGAGG 60.135 57.143 18.51 0.00 0.00 3.69
5135 5784 1.198713 CATGTGGCAGAGGTAGAGGT 58.801 55.000 0.00 0.00 0.00 3.85
5136 5785 1.134580 CATGTGGCAGAGGTAGAGGTG 60.135 57.143 0.00 0.00 0.00 4.00
5137 5786 0.904865 TGTGGCAGAGGTAGAGGTGG 60.905 60.000 0.00 0.00 0.00 4.61
5138 5787 1.306141 TGGCAGAGGTAGAGGTGGG 60.306 63.158 0.00 0.00 0.00 4.61
5139 5788 2.066999 GGCAGAGGTAGAGGTGGGG 61.067 68.421 0.00 0.00 0.00 4.96
5140 5789 1.306226 GCAGAGGTAGAGGTGGGGT 60.306 63.158 0.00 0.00 0.00 4.95
5141 5790 0.032416 GCAGAGGTAGAGGTGGGGTA 60.032 60.000 0.00 0.00 0.00 3.69
5142 5791 2.030045 GCAGAGGTAGAGGTGGGGTAG 61.030 61.905 0.00 0.00 0.00 3.18
5143 5792 0.935194 AGAGGTAGAGGTGGGGTAGG 59.065 60.000 0.00 0.00 0.00 3.18
5144 5793 0.635555 GAGGTAGAGGTGGGGTAGGT 59.364 60.000 0.00 0.00 0.00 3.08
5145 5794 0.338814 AGGTAGAGGTGGGGTAGGTG 59.661 60.000 0.00 0.00 0.00 4.00
5146 5795 0.690077 GGTAGAGGTGGGGTAGGTGG 60.690 65.000 0.00 0.00 0.00 4.61
5147 5796 0.690077 GTAGAGGTGGGGTAGGTGGG 60.690 65.000 0.00 0.00 0.00 4.61
5148 5797 1.893588 TAGAGGTGGGGTAGGTGGGG 61.894 65.000 0.00 0.00 0.00 4.96
5149 5798 4.364686 AGGTGGGGTAGGTGGGGG 62.365 72.222 0.00 0.00 0.00 5.40
5150 5799 4.688302 GGTGGGGTAGGTGGGGGT 62.688 72.222 0.00 0.00 0.00 4.95
5151 5800 3.335729 GTGGGGTAGGTGGGGGTG 61.336 72.222 0.00 0.00 0.00 4.61
5152 5801 3.543626 TGGGGTAGGTGGGGGTGA 61.544 66.667 0.00 0.00 0.00 4.02
5153 5802 2.043941 GGGGTAGGTGGGGGTGAT 59.956 66.667 0.00 0.00 0.00 3.06
5154 5803 1.621514 GGGGTAGGTGGGGGTGATT 60.622 63.158 0.00 0.00 0.00 2.57
5155 5804 1.613061 GGGTAGGTGGGGGTGATTG 59.387 63.158 0.00 0.00 0.00 2.67
5156 5805 1.076995 GGTAGGTGGGGGTGATTGC 60.077 63.158 0.00 0.00 0.00 3.56
5157 5806 1.451387 GTAGGTGGGGGTGATTGCG 60.451 63.158 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.131928 AGGTAAAAGCACGGGGTCCT 61.132 55.000 0.00 0.00 0.00 3.85
4 5 0.675837 GAGGTAAAAGCACGGGGTCC 60.676 60.000 0.00 0.00 0.00 4.46
5 6 0.675837 GGAGGTAAAAGCACGGGGTC 60.676 60.000 0.00 0.00 0.00 4.46
6 7 1.131928 AGGAGGTAAAAGCACGGGGT 61.132 55.000 0.00 0.00 0.00 4.95
7 8 0.037734 AAGGAGGTAAAAGCACGGGG 59.962 55.000 0.00 0.00 0.00 5.73
8 9 1.905637 AAAGGAGGTAAAAGCACGGG 58.094 50.000 0.00 0.00 0.00 5.28
9 10 3.568430 AGAAAAAGGAGGTAAAAGCACGG 59.432 43.478 0.00 0.00 0.00 4.94
10 11 4.830826 AGAAAAAGGAGGTAAAAGCACG 57.169 40.909 0.00 0.00 0.00 5.34
11 12 6.347483 CGAGTAGAAAAAGGAGGTAAAAGCAC 60.347 42.308 0.00 0.00 0.00 4.40
12 13 5.699458 CGAGTAGAAAAAGGAGGTAAAAGCA 59.301 40.000 0.00 0.00 0.00 3.91
13 14 5.390673 GCGAGTAGAAAAAGGAGGTAAAAGC 60.391 44.000 0.00 0.00 0.00 3.51
14 15 5.699458 TGCGAGTAGAAAAAGGAGGTAAAAG 59.301 40.000 0.00 0.00 0.00 2.27
15 16 5.613329 TGCGAGTAGAAAAAGGAGGTAAAA 58.387 37.500 0.00 0.00 0.00 1.52
16 17 5.217978 TGCGAGTAGAAAAAGGAGGTAAA 57.782 39.130 0.00 0.00 0.00 2.01
17 18 4.877378 TGCGAGTAGAAAAAGGAGGTAA 57.123 40.909 0.00 0.00 0.00 2.85
18 19 4.562143 GGTTGCGAGTAGAAAAAGGAGGTA 60.562 45.833 0.00 0.00 0.00 3.08
19 20 3.400255 GTTGCGAGTAGAAAAAGGAGGT 58.600 45.455 0.00 0.00 0.00 3.85
20 21 2.742589 GGTTGCGAGTAGAAAAAGGAGG 59.257 50.000 0.00 0.00 0.00 4.30
21 22 2.742589 GGGTTGCGAGTAGAAAAAGGAG 59.257 50.000 0.00 0.00 0.00 3.69
22 23 2.105134 TGGGTTGCGAGTAGAAAAAGGA 59.895 45.455 0.00 0.00 0.00 3.36
23 24 2.500229 TGGGTTGCGAGTAGAAAAAGG 58.500 47.619 0.00 0.00 0.00 3.11
24 25 4.537015 CTTTGGGTTGCGAGTAGAAAAAG 58.463 43.478 0.00 0.00 0.00 2.27
25 26 3.243267 GCTTTGGGTTGCGAGTAGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
26 27 2.292292 GCTTTGGGTTGCGAGTAGAAAA 59.708 45.455 0.00 0.00 0.00 2.29
27 28 1.877443 GCTTTGGGTTGCGAGTAGAAA 59.123 47.619 0.00 0.00 0.00 2.52
28 29 1.202710 TGCTTTGGGTTGCGAGTAGAA 60.203 47.619 0.00 0.00 0.00 2.10
29 30 0.394938 TGCTTTGGGTTGCGAGTAGA 59.605 50.000 0.00 0.00 0.00 2.59
30 31 1.453155 ATGCTTTGGGTTGCGAGTAG 58.547 50.000 0.00 0.00 0.00 2.57
31 32 2.289756 TGTATGCTTTGGGTTGCGAGTA 60.290 45.455 0.00 0.00 0.00 2.59
32 33 1.165270 GTATGCTTTGGGTTGCGAGT 58.835 50.000 0.00 0.00 0.00 4.18
33 34 1.131126 CTGTATGCTTTGGGTTGCGAG 59.869 52.381 0.00 0.00 0.00 5.03
34 35 1.164411 CTGTATGCTTTGGGTTGCGA 58.836 50.000 0.00 0.00 0.00 5.10
35 36 0.881118 ACTGTATGCTTTGGGTTGCG 59.119 50.000 0.00 0.00 0.00 4.85
36 37 2.817258 TGTACTGTATGCTTTGGGTTGC 59.183 45.455 0.00 0.00 0.00 4.17
37 38 5.643379 AATGTACTGTATGCTTTGGGTTG 57.357 39.130 0.00 0.00 0.00 3.77
38 39 6.481643 ACTAATGTACTGTATGCTTTGGGTT 58.518 36.000 0.00 0.00 0.00 4.11
39 40 6.062258 ACTAATGTACTGTATGCTTTGGGT 57.938 37.500 0.00 0.00 0.00 4.51
40 41 7.497595 TCTACTAATGTACTGTATGCTTTGGG 58.502 38.462 0.00 0.00 0.00 4.12
41 42 8.942338 TTCTACTAATGTACTGTATGCTTTGG 57.058 34.615 0.00 0.00 0.00 3.28
45 46 9.587772 CACTTTTCTACTAATGTACTGTATGCT 57.412 33.333 0.00 0.00 0.00 3.79
46 47 9.367444 ACACTTTTCTACTAATGTACTGTATGC 57.633 33.333 0.00 0.00 0.00 3.14
57 58 9.367444 CGGTCAGATTTACACTTTTCTACTAAT 57.633 33.333 0.00 0.00 0.00 1.73
58 59 7.816031 CCGGTCAGATTTACACTTTTCTACTAA 59.184 37.037 0.00 0.00 0.00 2.24
59 60 7.177216 TCCGGTCAGATTTACACTTTTCTACTA 59.823 37.037 0.00 0.00 0.00 1.82
60 61 6.014840 TCCGGTCAGATTTACACTTTTCTACT 60.015 38.462 0.00 0.00 0.00 2.57
61 62 6.161381 TCCGGTCAGATTTACACTTTTCTAC 58.839 40.000 0.00 0.00 0.00 2.59
62 63 6.349243 TCCGGTCAGATTTACACTTTTCTA 57.651 37.500 0.00 0.00 0.00 2.10
63 64 5.223449 TCCGGTCAGATTTACACTTTTCT 57.777 39.130 0.00 0.00 0.00 2.52
64 65 6.496338 AATCCGGTCAGATTTACACTTTTC 57.504 37.500 0.00 0.00 32.46 2.29
65 66 6.488683 TCAAATCCGGTCAGATTTACACTTTT 59.511 34.615 0.00 0.00 43.06 2.27
66 67 6.001460 TCAAATCCGGTCAGATTTACACTTT 58.999 36.000 0.00 0.00 43.06 2.66
67 68 5.556915 TCAAATCCGGTCAGATTTACACTT 58.443 37.500 0.00 0.00 43.06 3.16
68 69 5.160607 TCAAATCCGGTCAGATTTACACT 57.839 39.130 0.00 0.00 43.06 3.55
69 70 5.007724 GGATCAAATCCGGTCAGATTTACAC 59.992 44.000 0.00 0.00 43.06 2.90
70 71 5.123227 GGATCAAATCCGGTCAGATTTACA 58.877 41.667 0.00 0.00 43.06 2.41
71 72 5.674933 GGATCAAATCCGGTCAGATTTAC 57.325 43.478 0.00 0.00 43.06 2.01
86 87 3.004171 CGTTTGATACCGGTGGATCAAA 58.996 45.455 29.33 29.33 45.34 2.69
87 88 2.623535 CGTTTGATACCGGTGGATCAA 58.376 47.619 23.10 23.10 39.67 2.57
88 89 1.134640 CCGTTTGATACCGGTGGATCA 60.135 52.381 19.93 16.90 39.38 2.92
89 90 1.578583 CCGTTTGATACCGGTGGATC 58.421 55.000 19.93 14.15 39.38 3.36
90 91 3.772619 CCGTTTGATACCGGTGGAT 57.227 52.632 19.93 2.61 39.38 3.41
96 97 1.194495 GAGCGTACCGTTTGATACCG 58.806 55.000 0.00 0.00 0.00 4.02
97 98 1.194495 CGAGCGTACCGTTTGATACC 58.806 55.000 0.00 0.00 0.00 2.73
98 99 0.569349 GCGAGCGTACCGTTTGATAC 59.431 55.000 0.00 0.00 0.00 2.24
99 100 0.452987 AGCGAGCGTACCGTTTGATA 59.547 50.000 0.00 0.00 0.00 2.15
100 101 0.801067 GAGCGAGCGTACCGTTTGAT 60.801 55.000 0.00 0.00 0.00 2.57
101 102 1.443194 GAGCGAGCGTACCGTTTGA 60.443 57.895 0.00 0.00 0.00 2.69
102 103 2.774951 CGAGCGAGCGTACCGTTTG 61.775 63.158 0.00 0.00 0.00 2.93
103 104 2.503375 CGAGCGAGCGTACCGTTT 60.503 61.111 0.00 0.00 0.00 3.60
118 119 4.722535 AAGAGGGAGGGGCAGCGA 62.723 66.667 0.00 0.00 0.00 4.93
119 120 4.479993 CAAGAGGGAGGGGCAGCG 62.480 72.222 0.00 0.00 0.00 5.18
120 121 4.811364 GCAAGAGGGAGGGGCAGC 62.811 72.222 0.00 0.00 0.00 5.25
121 122 3.333219 TGCAAGAGGGAGGGGCAG 61.333 66.667 0.00 0.00 0.00 4.85
122 123 3.650950 GTGCAAGAGGGAGGGGCA 61.651 66.667 0.00 0.00 0.00 5.36
123 124 3.210012 TTGTGCAAGAGGGAGGGGC 62.210 63.158 0.00 0.00 0.00 5.80
124 125 1.001641 CTTGTGCAAGAGGGAGGGG 60.002 63.158 6.08 0.00 40.79 4.79
125 126 0.401738 TTCTTGTGCAAGAGGGAGGG 59.598 55.000 13.42 0.00 46.80 4.30
126 127 2.089980 CATTCTTGTGCAAGAGGGAGG 58.910 52.381 13.42 0.00 46.80 4.30
127 128 3.063510 TCATTCTTGTGCAAGAGGGAG 57.936 47.619 13.42 6.67 46.80 4.30
128 129 3.009363 TCATCATTCTTGTGCAAGAGGGA 59.991 43.478 13.42 14.36 46.80 4.20
129 130 3.128242 GTCATCATTCTTGTGCAAGAGGG 59.872 47.826 13.42 10.38 46.80 4.30
130 131 3.181513 CGTCATCATTCTTGTGCAAGAGG 60.182 47.826 13.42 10.67 46.80 3.69
131 132 3.681417 TCGTCATCATTCTTGTGCAAGAG 59.319 43.478 13.42 5.12 46.80 2.85
139 140 3.425359 GCAACACCTCGTCATCATTCTTG 60.425 47.826 0.00 0.00 0.00 3.02
146 147 1.003839 TGGGCAACACCTCGTCATC 60.004 57.895 0.00 0.00 39.10 2.92
148 149 2.110213 GTGGGCAACACCTCGTCA 59.890 61.111 0.00 0.00 44.49 4.35
165 166 5.862796 TTTGTGTGGTCAAATTCGGCACG 62.863 47.826 0.00 0.00 41.89 5.34
197 198 8.565896 AACACTCTTAATACAGCATTCATTCA 57.434 30.769 0.00 0.00 0.00 2.57
226 228 4.632153 ACAGATCCACGGCATTATCTTAC 58.368 43.478 0.00 0.00 0.00 2.34
227 229 4.955811 ACAGATCCACGGCATTATCTTA 57.044 40.909 0.00 0.00 0.00 2.10
228 230 3.845781 ACAGATCCACGGCATTATCTT 57.154 42.857 0.00 0.00 0.00 2.40
270 276 1.275657 CACACAGCGTTCGTTCACC 59.724 57.895 0.00 0.00 0.00 4.02
316 323 0.034767 ACCACAGTGCAGATCCATGG 60.035 55.000 4.97 4.97 0.00 3.66
333 342 1.534175 CGTACTGCTGCTGCTAGTACC 60.534 57.143 29.67 20.75 43.07 3.34
417 430 3.721370 ATCCAATCTGGGGCGTGGC 62.721 63.158 0.00 0.00 38.32 5.01
445 458 1.674962 GTTGGAGATCTACCTACGCGT 59.325 52.381 19.17 19.17 0.00 6.01
447 460 3.795623 TTGTTGGAGATCTACCTACGC 57.204 47.619 1.43 0.00 36.31 4.42
448 461 5.962433 TCTTTTGTTGGAGATCTACCTACG 58.038 41.667 1.43 0.00 36.31 3.51
449 462 8.794335 AATTCTTTTGTTGGAGATCTACCTAC 57.206 34.615 1.43 10.01 34.69 3.18
470 483 7.759433 CAGAGAGAGAGAAGAGGTTGTTAATTC 59.241 40.741 0.00 0.00 0.00 2.17
516 552 2.448931 ACCTGGGGTGGGAACGAA 60.449 61.111 0.00 0.00 32.98 3.85
517 553 2.926242 GACCTGGGGTGGGAACGA 60.926 66.667 0.00 0.00 35.25 3.85
518 554 2.928396 AGACCTGGGGTGGGAACG 60.928 66.667 0.00 0.00 35.25 3.95
519 555 2.603652 GGAGACCTGGGGTGGGAAC 61.604 68.421 0.00 0.00 35.25 3.62
520 556 2.204090 GGAGACCTGGGGTGGGAA 60.204 66.667 0.00 0.00 35.25 3.97
521 557 2.646284 TTTGGAGACCTGGGGTGGGA 62.646 60.000 0.00 0.00 35.25 4.37
593 630 0.771755 GGGACAGACAAAGAAGGGGT 59.228 55.000 0.00 0.00 0.00 4.95
598 635 1.072505 GCCGGGGACAGACAAAGAA 59.927 57.895 2.18 0.00 0.00 2.52
599 636 1.841556 AGCCGGGGACAGACAAAGA 60.842 57.895 2.18 0.00 0.00 2.52
600 637 1.672356 CAGCCGGGGACAGACAAAG 60.672 63.158 2.18 0.00 0.00 2.77
601 638 2.429930 CAGCCGGGGACAGACAAA 59.570 61.111 2.18 0.00 0.00 2.83
602 639 4.329545 GCAGCCGGGGACAGACAA 62.330 66.667 2.18 0.00 0.00 3.18
604 641 4.767255 CTGCAGCCGGGGACAGAC 62.767 72.222 2.18 0.00 31.67 3.51
628 673 1.067495 AGAAAAGAAGGCGAGAGACCG 60.067 52.381 0.00 0.00 43.69 4.79
630 675 2.028930 TGGAGAAAAGAAGGCGAGAGAC 60.029 50.000 0.00 0.00 42.06 3.36
645 691 4.373116 GGCGACTGCGGTGGAGAA 62.373 66.667 12.40 0.00 44.10 2.87
672 725 1.369091 CCAAGAAACGATGGCGGAGG 61.369 60.000 0.00 0.00 43.17 4.30
673 726 0.391130 TCCAAGAAACGATGGCGGAG 60.391 55.000 0.00 0.00 43.17 4.63
674 727 0.672401 GTCCAAGAAACGATGGCGGA 60.672 55.000 0.00 0.00 43.17 5.54
675 728 0.673644 AGTCCAAGAAACGATGGCGG 60.674 55.000 0.00 0.00 43.17 6.13
676 729 0.721718 GAGTCCAAGAAACGATGGCG 59.278 55.000 0.00 0.00 44.79 5.69
677 730 2.003301 GAGAGTCCAAGAAACGATGGC 58.997 52.381 0.00 0.00 36.62 4.40
730 783 1.383248 AATGGGGGACGAGGAGGAG 60.383 63.158 0.00 0.00 0.00 3.69
731 784 1.689233 CAATGGGGGACGAGGAGGA 60.689 63.158 0.00 0.00 0.00 3.71
732 785 2.911143 CAATGGGGGACGAGGAGG 59.089 66.667 0.00 0.00 0.00 4.30
739 792 0.470341 GAGGTCTAGCAATGGGGGAC 59.530 60.000 0.00 0.00 0.00 4.46
755 808 2.124942 GCTTTCTGGGGCTCGAGG 60.125 66.667 15.58 0.00 0.00 4.63
768 821 4.411013 AGGCTAGAAATTTGTCAGGCTTT 58.589 39.130 11.44 0.00 38.85 3.51
771 824 3.376546 CAGAGGCTAGAAATTTGTCAGGC 59.623 47.826 0.00 2.14 0.00 4.85
777 830 3.350833 AGGTGCAGAGGCTAGAAATTTG 58.649 45.455 0.00 0.00 41.91 2.32
795 848 2.420129 GCGAGGGAATGTATGTGAAGGT 60.420 50.000 0.00 0.00 0.00 3.50
801 854 2.951642 CAATTGGCGAGGGAATGTATGT 59.048 45.455 0.00 0.00 0.00 2.29
802 855 2.287788 GCAATTGGCGAGGGAATGTATG 60.288 50.000 7.72 0.00 0.00 2.39
803 856 1.956477 GCAATTGGCGAGGGAATGTAT 59.044 47.619 7.72 0.00 0.00 2.29
804 857 1.388547 GCAATTGGCGAGGGAATGTA 58.611 50.000 7.72 0.00 0.00 2.29
842 895 4.899239 CCCGCGCCTGAGATGGAC 62.899 72.222 0.00 0.00 0.00 4.02
855 908 3.508840 CTCCAATCAACGCCCCGC 61.509 66.667 0.00 0.00 0.00 6.13
869 922 1.404851 CGCAGTTTTCCCTCTCTCTCC 60.405 57.143 0.00 0.00 0.00 3.71
870 923 1.404851 CCGCAGTTTTCCCTCTCTCTC 60.405 57.143 0.00 0.00 0.00 3.20
871 924 0.610687 CCGCAGTTTTCCCTCTCTCT 59.389 55.000 0.00 0.00 0.00 3.10
872 925 0.608640 TCCGCAGTTTTCCCTCTCTC 59.391 55.000 0.00 0.00 0.00 3.20
873 926 0.610687 CTCCGCAGTTTTCCCTCTCT 59.389 55.000 0.00 0.00 0.00 3.10
903 956 3.372422 AACAGCACACCCCAGCCAA 62.372 57.895 0.00 0.00 0.00 4.52
920 975 1.006571 GAGCACGAACGGACAGGAA 60.007 57.895 0.00 0.00 0.00 3.36
923 978 2.432628 GGGAGCACGAACGGACAG 60.433 66.667 0.00 0.00 0.00 3.51
928 983 3.659089 AATCCGGGGAGCACGAACG 62.659 63.158 0.00 0.00 0.00 3.95
930 985 1.376683 CAAATCCGGGGAGCACGAA 60.377 57.895 0.00 0.00 0.00 3.85
931 986 2.267642 CAAATCCGGGGAGCACGA 59.732 61.111 0.00 0.00 0.00 4.35
973 1030 0.417437 TGGAGGATGGAGTGAGGGAA 59.583 55.000 0.00 0.00 0.00 3.97
1080 1138 3.445096 CCATGGCTGGTAAAAAGAAGGAG 59.555 47.826 0.00 0.00 37.79 3.69
1106 1166 5.988462 CTGAAAGAACTGAAGCAAGTGGCA 61.988 45.833 0.00 0.00 40.88 4.92
1193 1257 1.274712 CCAGGAAGAGGACAAGCTCT 58.725 55.000 0.00 0.00 0.00 4.09
1195 1259 1.682257 GCCAGGAAGAGGACAAGCT 59.318 57.895 0.00 0.00 0.00 3.74
1205 1269 0.323178 AACAGCATGAGGCCAGGAAG 60.323 55.000 5.01 0.00 46.50 3.46
1307 1375 5.555966 AGAAAGAAAGATCCTGGAGTTCAC 58.444 41.667 15.75 9.19 0.00 3.18
1391 1474 3.258622 AGCACAAGGACAGGAAGTACTAC 59.741 47.826 0.00 0.00 41.93 2.73
1394 1477 2.841442 AGCACAAGGACAGGAAGTAC 57.159 50.000 0.00 0.00 0.00 2.73
1439 1525 4.506625 CCTGTACATGAAAGTGAAAGGGGA 60.507 45.833 0.00 0.00 0.00 4.81
1448 1534 4.706842 AAGTGGTCCTGTACATGAAAGT 57.293 40.909 0.00 0.00 0.00 2.66
1495 1581 5.355071 CACCTGCACTATCTAGCATTTCAAA 59.645 40.000 0.00 0.00 40.42 2.69
1496 1582 4.877823 CACCTGCACTATCTAGCATTTCAA 59.122 41.667 0.00 0.00 40.42 2.69
1505 1591 1.789523 GGGGACACCTGCACTATCTA 58.210 55.000 0.00 0.00 36.80 1.98
1590 1685 2.939103 GACGGCATTGCTTCTACAGAAT 59.061 45.455 8.82 0.00 33.01 2.40
1635 1735 8.757982 AAGCATTGTTTCATATCCTGACTATT 57.242 30.769 0.00 0.00 32.17 1.73
1638 1738 7.994911 TGATAAGCATTGTTTCATATCCTGACT 59.005 33.333 0.00 0.00 32.17 3.41
1668 1769 9.226606 CCATGTTTAACTAGATGGTAAAGTGAA 57.773 33.333 0.00 0.00 38.37 3.18
1671 1772 9.449719 CTTCCATGTTTAACTAGATGGTAAAGT 57.550 33.333 11.15 0.00 38.37 2.66
1677 1778 8.511604 AACATCTTCCATGTTTAACTAGATGG 57.488 34.615 18.42 13.79 40.93 3.51
1716 1818 5.297029 GTGAGGTGATGGGTTAGAAAATAGC 59.703 44.000 0.00 0.00 0.00 2.97
1776 1881 3.865745 GGTCATCAGTGAATCACTAACCG 59.134 47.826 16.28 3.84 43.43 4.44
1976 2087 7.137490 TGTCTTGCTTCTTATCATCACAAAG 57.863 36.000 0.00 0.00 0.00 2.77
1977 2088 7.692460 ATGTCTTGCTTCTTATCATCACAAA 57.308 32.000 0.00 0.00 0.00 2.83
2002 2113 9.118300 CAGAATATTTTGCTTCTTATCCTGACT 57.882 33.333 0.00 0.00 29.34 3.41
2003 2114 8.897752 ACAGAATATTTTGCTTCTTATCCTGAC 58.102 33.333 5.92 0.00 29.34 3.51
2031 2235 8.179509 AGTAGTCTGTAAGTGCTCTTTCTTTA 57.820 34.615 6.31 0.00 35.36 1.85
2050 2254 4.321378 GGCGAATATTGAGAGGGAGTAGTC 60.321 50.000 0.00 0.00 0.00 2.59
2057 2261 3.475566 TGAAGGCGAATATTGAGAGGG 57.524 47.619 0.00 0.00 0.00 4.30
2064 2268 4.336433 CCTCACACATTGAAGGCGAATATT 59.664 41.667 0.00 0.00 32.21 1.28
2112 2316 6.045955 GCAAGAGATAAGGACCACTTAGAAG 58.954 44.000 0.00 0.00 44.43 2.85
2180 2385 5.847304 TCATCTTGGTATGAATTCTCCTCG 58.153 41.667 7.05 3.32 32.97 4.63
2270 2475 7.288810 AGAGAGCTCTATCTTCAAACCATAG 57.711 40.000 18.25 0.00 38.35 2.23
2357 2562 0.678048 GGTGGATGAGGTTGTCCTGC 60.678 60.000 0.00 0.00 45.24 4.85
2363 2568 0.679002 CTGCCTGGTGGATGAGGTTG 60.679 60.000 0.00 0.00 34.57 3.77
2465 2673 2.542020 TCGCAATGTGAAGGTCTTCA 57.458 45.000 9.13 9.13 46.27 3.02
2522 2730 0.909610 AGCCAAAGAGGTCCGGATCA 60.910 55.000 19.03 0.00 40.61 2.92
2528 2736 2.361737 GGCCAGCCAAAGAGGTCC 60.362 66.667 3.12 0.00 40.61 4.46
2612 2820 0.179032 TGAAGTTCCCGAGCTTTGCA 60.179 50.000 0.00 0.00 31.89 4.08
2747 2955 4.442192 GGGAGACACTTCTTGGCATAGTAG 60.442 50.000 0.00 0.00 34.40 2.57
2780 2988 1.675310 TCCCATGCTTTGACGCCTG 60.675 57.895 0.00 0.00 0.00 4.85
2996 3204 3.243704 CCTCCAGTGTAGCTTCATCTAGC 60.244 52.174 0.00 0.00 41.53 3.42
3008 3216 3.291584 CAGCAGTAGATCCTCCAGTGTA 58.708 50.000 0.00 0.00 0.00 2.90
3065 3273 3.756677 CTGCGCACACACTCGACG 61.757 66.667 5.66 0.00 0.00 5.12
3071 3279 1.672356 AAGGATCCTGCGCACACAC 60.672 57.895 17.02 0.00 0.00 3.82
3278 3486 2.163509 TCATCTAGAGGCCGAGCATAC 58.836 52.381 0.00 0.00 0.00 2.39
3284 3492 1.145945 AGACCATCATCTAGAGGCCGA 59.854 52.381 0.00 0.00 0.00 5.54
3302 3510 1.013596 CATCAATGGCGCGGTAAAGA 58.986 50.000 8.83 0.00 0.00 2.52
3352 3560 8.506437 TGTCACTGATGATGTTTTCAGATAAAC 58.494 33.333 6.91 0.00 41.53 2.01
3365 3573 5.698089 ACAAACACTAGTGTCACTGATGATG 59.302 40.000 28.04 16.37 44.13 3.07
3367 3575 5.276461 ACAAACACTAGTGTCACTGATGA 57.724 39.130 28.04 0.00 44.13 2.92
3368 3576 7.384932 TGATTACAAACACTAGTGTCACTGATG 59.615 37.037 28.04 19.84 44.13 3.07
3387 4005 9.725019 AACTTAACTGAAGATGTGATGATTACA 57.275 29.630 0.00 0.00 38.65 2.41
3414 4033 0.975887 GCCTTCAATTCTGGGGCAAA 59.024 50.000 0.00 0.00 39.77 3.68
3432 4051 3.370366 TGTCAAAACAAGTGCAAATGTGC 59.630 39.130 0.00 0.00 41.13 4.57
3443 4062 3.772932 ACAGTGTGCATGTCAAAACAAG 58.227 40.909 0.00 0.00 39.30 3.16
3446 4065 5.748152 ACATTAACAGTGTGCATGTCAAAAC 59.252 36.000 12.73 0.00 0.00 2.43
3451 4070 4.858935 ACAACATTAACAGTGTGCATGTC 58.141 39.130 16.99 0.00 0.00 3.06
3456 4075 8.574196 AAGATTAAACAACATTAACAGTGTGC 57.426 30.769 0.00 0.00 0.00 4.57
3477 4096 8.347771 CGACAATGTGATGATTATGGAAAAGAT 58.652 33.333 0.00 0.00 0.00 2.40
3479 4098 6.415867 GCGACAATGTGATGATTATGGAAAAG 59.584 38.462 0.00 0.00 0.00 2.27
3491 4110 2.286294 GGCTAAGAGCGACAATGTGATG 59.714 50.000 0.00 0.00 43.62 3.07
3503 4122 3.133003 TCATAAGTCCAGTGGCTAAGAGC 59.867 47.826 3.51 0.00 41.46 4.09
3513 4132 7.939039 TGAAGTTCAGATTTTCATAAGTCCAGT 59.061 33.333 0.08 0.00 0.00 4.00
3516 4135 7.174946 TGGTGAAGTTCAGATTTTCATAAGTCC 59.825 37.037 5.62 0.00 33.82 3.85
3557 4176 4.883585 TGTCAGCATTGAAGAACAAGACTT 59.116 37.500 0.00 0.00 42.02 3.01
3569 4188 2.032376 TGCGCCTGTCAGCATTGA 59.968 55.556 4.18 0.00 38.59 2.57
3770 4389 1.909302 GAGGATCCTTCCAGGTTGTCA 59.091 52.381 17.42 0.00 45.30 3.58
3860 4479 3.649277 CTGGTTCTCCCTCACCGCG 62.649 68.421 0.00 0.00 35.60 6.46
4060 4703 1.445410 TGCCGGTCGTTCATCTTCG 60.445 57.895 1.90 0.00 0.00 3.79
4163 4806 0.890683 CAGGCCAGGGTAAAAGCTTG 59.109 55.000 5.01 0.00 0.00 4.01
4342 4985 9.664332 CTCCAGTTCTTAGTTACTACTACTACA 57.336 37.037 0.00 0.00 36.61 2.74
4433 5078 4.164030 TCTCTAGCTAAATCATGGCAACCA 59.836 41.667 0.00 0.00 38.19 3.67
4494 5139 3.642705 TGACTCATGAACAACTCGACTG 58.357 45.455 0.00 0.00 0.00 3.51
4587 5232 0.609662 CATTTGGACAGGGCTTTGGG 59.390 55.000 0.00 0.00 0.00 4.12
4588 5233 0.037046 GCATTTGGACAGGGCTTTGG 60.037 55.000 0.00 0.00 0.00 3.28
4599 5245 3.499338 ACAAATCCACAGAGCATTTGGA 58.501 40.909 8.14 4.32 43.60 3.53
4718 5365 4.814234 CCACGCTAAAACTATGCTATTCCA 59.186 41.667 0.00 0.00 0.00 3.53
4754 5401 1.033746 CAATTGACGCCCTGAGCCAT 61.034 55.000 0.00 0.00 38.78 4.40
4762 5409 2.945008 TGATGATTCTCAATTGACGCCC 59.055 45.455 3.38 0.00 0.00 6.13
4778 5425 5.511373 CCCTGTGTTTCTACAACTCTGATGA 60.511 44.000 0.00 0.00 35.69 2.92
4849 5496 9.189156 CCCTCCAACAAAGATCATAGAAAAATA 57.811 33.333 0.00 0.00 0.00 1.40
4871 5518 4.379302 AGATGAATAAATCTGGCCCCTC 57.621 45.455 0.00 0.00 35.54 4.30
4872 5519 4.821532 AAGATGAATAAATCTGGCCCCT 57.178 40.909 0.00 0.00 36.99 4.79
4873 5520 4.895297 TCAAAGATGAATAAATCTGGCCCC 59.105 41.667 0.00 0.00 36.99 5.80
4874 5521 6.661304 ATCAAAGATGAATAAATCTGGCCC 57.339 37.500 0.00 0.00 39.49 5.80
4875 5522 8.627208 TCTATCAAAGATGAATAAATCTGGCC 57.373 34.615 0.00 0.00 39.49 5.36
4924 5571 2.403252 AGAATTTCAGGTACCTGGCG 57.597 50.000 35.94 16.00 43.75 5.69
4926 5573 5.335976 GCTCAAAAGAATTTCAGGTACCTGG 60.336 44.000 35.94 20.53 43.75 4.45
4931 5578 4.151689 CGACGCTCAAAAGAATTTCAGGTA 59.848 41.667 0.00 0.00 37.28 3.08
4956 5603 1.601663 CCACGCAAAAGCGGAAATTGA 60.602 47.619 14.62 0.00 37.53 2.57
4970 5617 2.515757 TGCAGCTTCAACCACGCA 60.516 55.556 0.00 0.00 0.00 5.24
4971 5618 2.063541 AACTGCAGCTTCAACCACGC 62.064 55.000 15.27 0.00 0.00 5.34
4972 5619 0.381801 AAACTGCAGCTTCAACCACG 59.618 50.000 15.27 0.00 0.00 4.94
4973 5620 1.843992 CAAACTGCAGCTTCAACCAC 58.156 50.000 15.27 0.00 0.00 4.16
4974 5621 0.102844 GCAAACTGCAGCTTCAACCA 59.897 50.000 15.27 0.00 44.26 3.67
4983 5631 1.210931 CCATCCACGCAAACTGCAG 59.789 57.895 13.48 13.48 45.36 4.41
4988 5636 0.238289 CTCACACCATCCACGCAAAC 59.762 55.000 0.00 0.00 0.00 2.93
4995 5644 0.034186 GGCATTCCTCACACCATCCA 60.034 55.000 0.00 0.00 0.00 3.41
5033 5682 3.414700 GTTCCTGCTCGTGCACGG 61.415 66.667 36.41 27.12 45.31 4.94
5046 5695 2.354773 CTCGCTATCGCCGGTTCC 60.355 66.667 1.90 0.00 35.26 3.62
5060 5709 0.388649 CCCTCAGTGTTTCGGACTCG 60.389 60.000 0.00 0.00 37.82 4.18
5114 5763 1.134580 CCTCTACCTCTGCCACATGTG 60.135 57.143 19.31 19.31 0.00 3.21
5115 5764 1.198713 CCTCTACCTCTGCCACATGT 58.801 55.000 0.00 0.00 0.00 3.21
5116 5765 1.134580 CACCTCTACCTCTGCCACATG 60.135 57.143 0.00 0.00 0.00 3.21
5117 5766 1.198713 CACCTCTACCTCTGCCACAT 58.801 55.000 0.00 0.00 0.00 3.21
5118 5767 0.904865 CCACCTCTACCTCTGCCACA 60.905 60.000 0.00 0.00 0.00 4.17
5119 5768 1.617947 CCCACCTCTACCTCTGCCAC 61.618 65.000 0.00 0.00 0.00 5.01
5120 5769 1.306141 CCCACCTCTACCTCTGCCA 60.306 63.158 0.00 0.00 0.00 4.92
5121 5770 2.066999 CCCCACCTCTACCTCTGCC 61.067 68.421 0.00 0.00 0.00 4.85
5122 5771 0.032416 TACCCCACCTCTACCTCTGC 60.032 60.000 0.00 0.00 0.00 4.26
5123 5772 1.411787 CCTACCCCACCTCTACCTCTG 60.412 61.905 0.00 0.00 0.00 3.35
5124 5773 0.935194 CCTACCCCACCTCTACCTCT 59.065 60.000 0.00 0.00 0.00 3.69
5125 5774 0.635555 ACCTACCCCACCTCTACCTC 59.364 60.000 0.00 0.00 0.00 3.85
5126 5775 0.338814 CACCTACCCCACCTCTACCT 59.661 60.000 0.00 0.00 0.00 3.08
5127 5776 0.690077 CCACCTACCCCACCTCTACC 60.690 65.000 0.00 0.00 0.00 3.18
5128 5777 0.690077 CCCACCTACCCCACCTCTAC 60.690 65.000 0.00 0.00 0.00 2.59
5129 5778 1.707827 CCCACCTACCCCACCTCTA 59.292 63.158 0.00 0.00 0.00 2.43
5130 5779 2.454941 CCCACCTACCCCACCTCT 59.545 66.667 0.00 0.00 0.00 3.69
5131 5780 2.691252 CCCCACCTACCCCACCTC 60.691 72.222 0.00 0.00 0.00 3.85
5132 5781 4.364686 CCCCCACCTACCCCACCT 62.365 72.222 0.00 0.00 0.00 4.00
5133 5782 4.688302 ACCCCCACCTACCCCACC 62.688 72.222 0.00 0.00 0.00 4.61
5134 5783 3.335729 CACCCCCACCTACCCCAC 61.336 72.222 0.00 0.00 0.00 4.61
5135 5784 2.440196 AATCACCCCCACCTACCCCA 62.440 60.000 0.00 0.00 0.00 4.96
5136 5785 1.621514 AATCACCCCCACCTACCCC 60.622 63.158 0.00 0.00 0.00 4.95
5137 5786 1.613061 CAATCACCCCCACCTACCC 59.387 63.158 0.00 0.00 0.00 3.69
5138 5787 1.076995 GCAATCACCCCCACCTACC 60.077 63.158 0.00 0.00 0.00 3.18
5139 5788 1.451387 CGCAATCACCCCCACCTAC 60.451 63.158 0.00 0.00 0.00 3.18
5140 5789 2.994699 CGCAATCACCCCCACCTA 59.005 61.111 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.