Multiple sequence alignment - TraesCS5D01G051000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G051000 chr5D 100.000 2468 0 0 1 2468 49022913 49025380 0.000000e+00 4558.0
1 TraesCS5D01G051000 chr5D 92.443 397 27 2 2072 2468 193498625 193499018 4.610000e-157 564.0
2 TraesCS5D01G051000 chr5B 84.138 1822 169 54 1 1775 49498993 49497245 0.000000e+00 1653.0
3 TraesCS5D01G051000 chr5B 86.500 1037 85 24 648 1641 582757941 582756917 0.000000e+00 1088.0
4 TraesCS5D01G051000 chr5B 81.669 671 91 9 933 1579 291896065 291896727 1.680000e-146 529.0
5 TraesCS5D01G051000 chr5B 81.157 674 94 17 4 651 582772369 582771703 6.090000e-141 510.0
6 TraesCS5D01G051000 chr5B 87.097 217 18 9 1610 1820 582756915 582756703 1.140000e-58 237.0
7 TraesCS5D01G051000 chr5B 81.818 66 10 1 1728 1793 49497245 49497308 1.000000e-03 54.7
8 TraesCS5D01G051000 chr2A 85.385 780 87 16 852 1610 36518283 36519056 0.000000e+00 784.0
9 TraesCS5D01G051000 chr2A 94.186 86 4 1 1644 1728 36519057 36519142 1.990000e-26 130.0
10 TraesCS5D01G051000 chr2A 94.595 37 2 0 1765 1801 36519376 36519340 9.530000e-05 58.4
11 TraesCS5D01G051000 chr4D 84.288 751 88 21 838 1566 507847974 507848716 0.000000e+00 706.0
12 TraesCS5D01G051000 chr4D 79.281 695 104 21 1 664 507847020 507847705 1.350000e-122 449.0
13 TraesCS5D01G051000 chr3D 93.199 397 27 0 2072 2468 518375254 518374858 3.540000e-163 584.0
14 TraesCS5D01G051000 chr3D 92.443 397 30 0 2072 2468 428278863 428279259 3.560000e-158 568.0
15 TraesCS5D01G051000 chr3D 92.443 397 29 1 2072 2468 64878200 64878595 1.280000e-157 566.0
16 TraesCS5D01G051000 chr3D 91.584 404 34 0 2065 2468 408915738 408915335 2.140000e-155 558.0
17 TraesCS5D01G051000 chr3D 87.411 421 50 3 948 1367 184487940 184487522 4.770000e-132 481.0
18 TraesCS5D01G051000 chr2D 92.947 397 28 0 2072 2468 128335459 128335063 1.650000e-161 579.0
19 TraesCS5D01G051000 chr1D 92.947 397 28 0 2072 2468 181182653 181183049 1.650000e-161 579.0
20 TraesCS5D01G051000 chr6D 92.481 399 30 0 2070 2468 113031404 113031802 2.750000e-159 571.0
21 TraesCS5D01G051000 chr6D 91.707 410 33 1 2059 2468 406222551 406222143 3.560000e-158 568.0
22 TraesCS5D01G051000 chr4B 81.859 667 93 5 934 1579 428189061 428188402 1.000000e-148 536.0
23 TraesCS5D01G051000 chr4B 79.143 700 101 27 1 664 656035231 656034541 2.250000e-120 442.0
24 TraesCS5D01G051000 chr5A 86.978 407 48 4 948 1353 678973243 678973645 1.040000e-123 453.0
25 TraesCS5D01G051000 chr3A 81.343 536 83 15 842 1367 113336700 113336172 1.060000e-113 420.0
26 TraesCS5D01G051000 chr3A 85.938 192 24 3 393 582 113337155 113336965 4.160000e-48 202.0
27 TraesCS5D01G051000 chr7B 80.548 365 52 13 1712 2071 202099152 202098802 1.880000e-66 263.0
28 TraesCS5D01G051000 chr7B 81.818 231 29 5 1593 1820 202099343 202099123 5.420000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G051000 chr5D 49022913 49025380 2467 False 4558.0 4558 100.0000 1 2468 1 chr5D.!!$F1 2467
1 TraesCS5D01G051000 chr5B 49497245 49498993 1748 True 1653.0 1653 84.1380 1 1775 1 chr5B.!!$R1 1774
2 TraesCS5D01G051000 chr5B 582756703 582757941 1238 True 662.5 1088 86.7985 648 1820 2 chr5B.!!$R3 1172
3 TraesCS5D01G051000 chr5B 291896065 291896727 662 False 529.0 529 81.6690 933 1579 1 chr5B.!!$F2 646
4 TraesCS5D01G051000 chr5B 582771703 582772369 666 True 510.0 510 81.1570 4 651 1 chr5B.!!$R2 647
5 TraesCS5D01G051000 chr2A 36518283 36519142 859 False 457.0 784 89.7855 852 1728 2 chr2A.!!$F1 876
6 TraesCS5D01G051000 chr4D 507847020 507848716 1696 False 577.5 706 81.7845 1 1566 2 chr4D.!!$F1 1565
7 TraesCS5D01G051000 chr4B 428188402 428189061 659 True 536.0 536 81.8590 934 1579 1 chr4B.!!$R1 645
8 TraesCS5D01G051000 chr4B 656034541 656035231 690 True 442.0 442 79.1430 1 664 1 chr4B.!!$R2 663
9 TraesCS5D01G051000 chr3A 113336172 113337155 983 True 311.0 420 83.6405 393 1367 2 chr3A.!!$R1 974
10 TraesCS5D01G051000 chr7B 202098802 202099343 541 True 222.5 263 81.1830 1593 2071 2 chr7B.!!$R1 478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.108186 CCTAGACCAATCACAGCGCA 60.108 55.0 11.47 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2425 3.256631 ACTTGGCTAATTGCAAGTTCAGG 59.743 43.478 4.05 5.08 45.15 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.963428 ACTAGTCCTACAACTTGCAGG 57.037 47.619 1.85 1.85 32.03 4.85
73 74 0.108186 CCTAGACCAATCACAGCGCA 60.108 55.000 11.47 0.00 0.00 6.09
77 78 1.915614 GACCAATCACAGCGCACCAG 61.916 60.000 11.47 0.00 0.00 4.00
93 94 1.190833 CCAGGTGGACTCTGCTGACT 61.191 60.000 0.00 0.00 37.39 3.41
157 160 3.426787 TTCCTTCTAATCAACCCGCAA 57.573 42.857 0.00 0.00 0.00 4.85
182 186 9.520515 AAGACAGTCACCTGAAATAATTATGTT 57.479 29.630 2.66 0.00 41.50 2.71
202 206 4.213270 TGTTTGATTAAGCTGTTGACTCCG 59.787 41.667 0.00 0.00 0.00 4.63
203 207 3.953712 TGATTAAGCTGTTGACTCCGA 57.046 42.857 0.00 0.00 0.00 4.55
230 240 2.528818 CCCCAACTCCAGACAGCCA 61.529 63.158 0.00 0.00 0.00 4.75
240 250 1.079819 AGACAGCCATGTTCGTCGG 60.080 57.895 0.00 0.00 40.68 4.79
262 279 2.187100 CCCCTCTCTTTCTCTGCTCTT 58.813 52.381 0.00 0.00 0.00 2.85
302 319 4.451150 CGCCGTCCAGCTAGCCAA 62.451 66.667 12.13 0.00 0.00 4.52
321 338 3.424703 CAACATGGTTTCCTGGAGTGAT 58.575 45.455 0.00 0.00 0.00 3.06
339 356 0.397675 ATGGATCCAGCTCCTCGTCA 60.398 55.000 21.33 0.00 36.20 4.35
340 357 1.323271 TGGATCCAGCTCCTCGTCAC 61.323 60.000 11.44 0.00 36.20 3.67
341 358 1.040339 GGATCCAGCTCCTCGTCACT 61.040 60.000 6.95 0.00 32.18 3.41
362 379 2.049156 CGGCGACTCTGTCAGCAA 60.049 61.111 0.00 0.00 35.22 3.91
377 394 0.326264 AGCAATCCGGTGAGCTCTTT 59.674 50.000 16.19 0.00 30.05 2.52
433 476 6.536684 AGATTTTATTTAGGCTCCTCCCAT 57.463 37.500 0.00 0.00 34.51 4.00
435 478 6.779539 AGATTTTATTTAGGCTCCTCCCATTG 59.220 38.462 0.00 0.00 34.51 2.82
535 578 1.476833 GGCCTTTGAGTCTGTGGACAA 60.477 52.381 0.00 0.00 44.36 3.18
552 595 4.289410 TGGACAATGGAAGAAGATTCCTGA 59.711 41.667 8.05 0.00 39.31 3.86
589 632 5.408604 AGGTTAGTAGTTTTTCAGATGTGCG 59.591 40.000 0.00 0.00 0.00 5.34
613 664 5.763204 GGTGAACTTCAGATTCAGTTACCAA 59.237 40.000 0.00 0.00 36.76 3.67
615 666 7.355778 GTGAACTTCAGATTCAGTTACCAAAG 58.644 38.462 0.00 0.00 36.76 2.77
622 673 7.152645 TCAGATTCAGTTACCAAAGTAGTGAC 58.847 38.462 0.00 0.00 0.00 3.67
664 725 8.252624 TGGTAGTGCCATATTTAGTGTACATA 57.747 34.615 0.00 0.00 43.61 2.29
665 726 8.876181 TGGTAGTGCCATATTTAGTGTACATAT 58.124 33.333 0.00 0.00 43.61 1.78
707 768 8.867112 AATATGTGATTTGCATGAACTTCATC 57.133 30.769 0.00 0.00 34.28 2.92
757 821 9.481340 TTGCTATAGTGCTGTAAGAAGATTATG 57.519 33.333 0.84 0.00 34.07 1.90
762 826 9.973450 ATAGTGCTGTAAGAAGATTATGTGTAG 57.027 33.333 0.00 0.00 34.07 2.74
1040 1278 3.181451 TGGGACATGTATGAAGATGAGGC 60.181 47.826 0.00 0.00 30.99 4.70
1048 1286 1.283347 TGAAGATGAGGCCAAGCTCT 58.717 50.000 5.01 0.00 0.00 4.09
1100 1338 7.660208 TGAAGAAAACTGTAAGATGTTAGGACC 59.340 37.037 0.00 0.00 37.43 4.46
1128 1366 9.981460 AAGGAACAGATGGAAAAATATCTTAGT 57.019 29.630 0.00 0.00 31.53 2.24
1212 1450 0.039708 GCACACAGCTTGCTCTTTCC 60.040 55.000 1.51 0.00 41.15 3.13
1284 1522 0.392998 GCATTCATCGGGTGGTGAGT 60.393 55.000 0.00 0.00 0.00 3.41
1329 1569 3.315596 TCAGATGATGCAAGAGAGGGAT 58.684 45.455 0.00 0.00 0.00 3.85
1380 1641 7.375053 TGAAGAAAGAGAAGAAGAAGCTAGAC 58.625 38.462 0.00 0.00 0.00 2.59
1433 1694 4.702131 GGAAGACACCAAGTGCAAGATAAT 59.298 41.667 0.00 0.00 36.98 1.28
1486 1747 6.489700 TGAGTGATCCATTGTTGTTGTAATGT 59.510 34.615 0.00 0.00 33.52 2.71
1487 1748 6.913170 AGTGATCCATTGTTGTTGTAATGTC 58.087 36.000 0.00 0.00 33.52 3.06
1488 1749 6.716628 AGTGATCCATTGTTGTTGTAATGTCT 59.283 34.615 0.00 0.00 33.52 3.41
1489 1750 6.803320 GTGATCCATTGTTGTTGTAATGTCTG 59.197 38.462 0.00 0.00 33.52 3.51
1490 1751 6.489700 TGATCCATTGTTGTTGTAATGTCTGT 59.510 34.615 0.00 0.00 33.52 3.41
1491 1752 6.707440 TCCATTGTTGTTGTAATGTCTGTT 57.293 33.333 0.00 0.00 33.52 3.16
1492 1753 6.502652 TCCATTGTTGTTGTAATGTCTGTTG 58.497 36.000 0.00 0.00 33.52 3.33
1493 1754 6.319911 TCCATTGTTGTTGTAATGTCTGTTGA 59.680 34.615 0.00 0.00 33.52 3.18
1494 1755 7.014134 TCCATTGTTGTTGTAATGTCTGTTGAT 59.986 33.333 0.00 0.00 33.52 2.57
1495 1756 7.326789 CCATTGTTGTTGTAATGTCTGTTGATC 59.673 37.037 0.00 0.00 33.52 2.92
1496 1757 7.566760 TTGTTGTTGTAATGTCTGTTGATCT 57.433 32.000 0.00 0.00 0.00 2.75
1497 1758 7.566760 TGTTGTTGTAATGTCTGTTGATCTT 57.433 32.000 0.00 0.00 0.00 2.40
1498 1759 8.669946 TGTTGTTGTAATGTCTGTTGATCTTA 57.330 30.769 0.00 0.00 0.00 2.10
1499 1760 9.114952 TGTTGTTGTAATGTCTGTTGATCTTAA 57.885 29.630 0.00 0.00 0.00 1.85
1505 1766 9.295825 TGTAATGTCTGTTGATCTTAATTTGGT 57.704 29.630 0.00 0.00 0.00 3.67
1506 1767 9.559958 GTAATGTCTGTTGATCTTAATTTGGTG 57.440 33.333 0.00 0.00 0.00 4.17
1507 1768 7.765695 ATGTCTGTTGATCTTAATTTGGTGT 57.234 32.000 0.00 0.00 0.00 4.16
1508 1769 8.862325 ATGTCTGTTGATCTTAATTTGGTGTA 57.138 30.769 0.00 0.00 0.00 2.90
1509 1770 8.094798 TGTCTGTTGATCTTAATTTGGTGTAC 57.905 34.615 0.00 0.00 0.00 2.90
1510 1771 7.936847 TGTCTGTTGATCTTAATTTGGTGTACT 59.063 33.333 0.00 0.00 0.00 2.73
1511 1772 8.784043 GTCTGTTGATCTTAATTTGGTGTACTT 58.216 33.333 0.00 0.00 0.00 2.24
1527 1834 8.057536 TGGTGTACTTTTGTAATGAAGTTGTT 57.942 30.769 0.00 0.00 37.32 2.83
1548 1859 5.814705 TGTTTCAGTGGGCTTGTTTAATTTG 59.185 36.000 0.00 0.00 0.00 2.32
1736 2080 9.672086 GTTAACTGAATTTGTATGTTAACTGCA 57.328 29.630 7.22 0.51 44.21 4.41
1777 2122 7.721286 ACTGCATATAGATTCAGTTAACTGC 57.279 36.000 27.49 15.52 43.46 4.40
1781 2126 9.208022 TGCATATAGATTCAGTTAACTGCATAC 57.792 33.333 27.49 18.10 43.46 2.39
1782 2127 9.208022 GCATATAGATTCAGTTAACTGCATACA 57.792 33.333 27.49 15.01 43.46 2.29
1793 2218 9.546909 CAGTTAACTGCATACAAATTCAGTTAG 57.453 33.333 22.03 0.00 45.90 2.34
1831 2256 7.133891 CAGTTAACTGAATGTTCCCACTTAG 57.866 40.000 28.17 0.00 46.59 2.18
1832 2257 6.710744 CAGTTAACTGAATGTTCCCACTTAGT 59.289 38.462 28.17 0.00 46.59 2.24
1833 2258 7.228706 CAGTTAACTGAATGTTCCCACTTAGTT 59.771 37.037 28.17 0.00 46.59 2.24
1834 2259 7.228706 AGTTAACTGAATGTTCCCACTTAGTTG 59.771 37.037 7.48 0.00 39.89 3.16
1835 2260 5.048846 ACTGAATGTTCCCACTTAGTTGT 57.951 39.130 0.00 0.00 0.00 3.32
1837 2262 6.231211 ACTGAATGTTCCCACTTAGTTGTAG 58.769 40.000 0.00 0.00 0.00 2.74
1855 2280 8.429493 AGTTGTAGTTAACTGAAGTAAACACC 57.571 34.615 18.56 5.25 39.33 4.16
1863 2288 8.896744 GTTAACTGAAGTAAACACCCTTAGTTT 58.103 33.333 0.00 0.00 41.63 2.66
1867 2292 7.228108 ACTGAAGTAAACACCCTTAGTTTAAGC 59.772 37.037 0.00 0.00 41.51 3.09
1868 2293 7.284820 TGAAGTAAACACCCTTAGTTTAAGCT 58.715 34.615 0.00 0.00 41.51 3.74
1869 2294 8.431222 TGAAGTAAACACCCTTAGTTTAAGCTA 58.569 33.333 0.00 0.00 41.51 3.32
1870 2295 9.276590 GAAGTAAACACCCTTAGTTTAAGCTAA 57.723 33.333 10.84 10.84 41.51 3.09
1871 2296 8.613060 AGTAAACACCCTTAGTTTAAGCTAAC 57.387 34.615 7.61 0.00 41.51 2.34
1872 2297 8.212995 AGTAAACACCCTTAGTTTAAGCTAACA 58.787 33.333 7.61 0.00 41.51 2.41
1873 2298 7.506328 AAACACCCTTAGTTTAAGCTAACAG 57.494 36.000 7.61 5.22 37.42 3.16
1874 2299 6.429521 ACACCCTTAGTTTAAGCTAACAGA 57.570 37.500 7.61 0.00 34.46 3.41
1876 2301 6.935208 ACACCCTTAGTTTAAGCTAACAGAAG 59.065 38.462 7.61 5.06 34.46 2.85
1877 2302 6.935208 CACCCTTAGTTTAAGCTAACAGAAGT 59.065 38.462 7.61 0.00 34.46 3.01
1878 2303 8.092687 CACCCTTAGTTTAAGCTAACAGAAGTA 58.907 37.037 7.61 0.00 34.46 2.24
1879 2304 8.654094 ACCCTTAGTTTAAGCTAACAGAAGTAA 58.346 33.333 7.61 0.26 34.46 2.24
1880 2305 9.498176 CCCTTAGTTTAAGCTAACAGAAGTAAA 57.502 33.333 7.61 0.00 34.46 2.01
1885 2310 9.043079 AGTTTAAGCTAACAGAAGTAAACTCAC 57.957 33.333 9.18 0.00 37.25 3.51
1886 2311 9.043079 GTTTAAGCTAACAGAAGTAAACTCACT 57.957 33.333 6.28 0.00 31.72 3.41
1887 2312 9.609346 TTTAAGCTAACAGAAGTAAACTCACTT 57.391 29.630 0.00 0.00 41.44 3.16
1915 2340 1.994779 GCAAACCGAATTTGGATGCAG 59.005 47.619 27.75 12.95 46.73 4.41
1925 2350 5.569059 CGAATTTGGATGCAGTTAACTGAAC 59.431 40.000 34.43 23.12 46.59 3.18
1929 2354 4.713553 TGGATGCAGTTAACTGAACTTGA 58.286 39.130 34.43 13.21 46.79 3.02
1935 2360 7.094508 TGCAGTTAACTGAACTTGAATTCAA 57.905 32.000 34.43 19.45 46.79 2.69
2010 2435 7.203218 AGTTTACTGAATTTTCCTGAACTTGC 58.797 34.615 0.00 0.00 0.00 4.01
2012 2437 5.596836 ACTGAATTTTCCTGAACTTGCAA 57.403 34.783 0.00 0.00 0.00 4.08
2018 2443 4.519540 TTTCCTGAACTTGCAATTAGCC 57.480 40.909 0.00 0.00 44.83 3.93
2071 2496 8.383318 CAGCATGCTATTTATAGTAAGTGGTT 57.617 34.615 22.19 0.00 32.96 3.67
2072 2497 8.285394 CAGCATGCTATTTATAGTAAGTGGTTG 58.715 37.037 22.19 0.00 32.96 3.77
2073 2498 7.993183 AGCATGCTATTTATAGTAAGTGGTTGT 59.007 33.333 21.21 0.00 32.96 3.32
2074 2499 8.283291 GCATGCTATTTATAGTAAGTGGTTGTC 58.717 37.037 11.37 0.00 32.96 3.18
2075 2500 7.997107 TGCTATTTATAGTAAGTGGTTGTCG 57.003 36.000 0.00 0.00 32.96 4.35
2076 2501 6.982141 TGCTATTTATAGTAAGTGGTTGTCGG 59.018 38.462 0.00 0.00 32.96 4.79
2077 2502 6.073927 GCTATTTATAGTAAGTGGTTGTCGGC 60.074 42.308 0.00 0.00 32.96 5.54
2078 2503 2.288961 ATAGTAAGTGGTTGTCGGCG 57.711 50.000 0.00 0.00 0.00 6.46
2079 2504 0.961019 TAGTAAGTGGTTGTCGGCGT 59.039 50.000 6.85 0.00 0.00 5.68
2080 2505 0.319297 AGTAAGTGGTTGTCGGCGTC 60.319 55.000 6.85 0.72 0.00 5.19
2081 2506 1.005867 TAAGTGGTTGTCGGCGTCC 60.006 57.895 6.85 6.51 0.00 4.79
2082 2507 1.466025 TAAGTGGTTGTCGGCGTCCT 61.466 55.000 6.85 0.00 0.00 3.85
2083 2508 2.989055 AAGTGGTTGTCGGCGTCCTG 62.989 60.000 6.85 0.00 0.00 3.86
2084 2509 4.308458 TGGTTGTCGGCGTCCTGG 62.308 66.667 6.85 0.00 0.00 4.45
2086 2511 3.998672 GTTGTCGGCGTCCTGGGA 61.999 66.667 6.85 0.00 0.00 4.37
2087 2512 3.235481 TTGTCGGCGTCCTGGGAA 61.235 61.111 6.85 0.00 0.00 3.97
2088 2513 3.524648 TTGTCGGCGTCCTGGGAAC 62.525 63.158 6.85 0.00 0.00 3.62
2107 2532 4.048470 GGGGTCCCCAGACTTGCC 62.048 72.222 23.53 0.00 44.65 4.52
2108 2533 2.936032 GGGTCCCCAGACTTGCCT 60.936 66.667 0.00 0.00 43.05 4.75
2109 2534 2.352805 GGTCCCCAGACTTGCCTG 59.647 66.667 0.00 0.00 43.05 4.85
2110 2535 2.360475 GTCCCCAGACTTGCCTGC 60.360 66.667 0.00 0.00 40.10 4.85
2111 2536 3.650950 TCCCCAGACTTGCCTGCC 61.651 66.667 0.00 0.00 32.97 4.85
2112 2537 3.655211 CCCCAGACTTGCCTGCCT 61.655 66.667 0.00 0.00 32.97 4.75
2113 2538 2.360852 CCCAGACTTGCCTGCCTG 60.361 66.667 0.00 0.00 32.97 4.85
2114 2539 3.060615 CCAGACTTGCCTGCCTGC 61.061 66.667 0.00 0.00 32.97 4.85
2115 2540 3.429141 CAGACTTGCCTGCCTGCG 61.429 66.667 0.00 0.00 0.00 5.18
2116 2541 3.630013 AGACTTGCCTGCCTGCGA 61.630 61.111 0.00 0.00 0.00 5.10
2117 2542 3.426568 GACTTGCCTGCCTGCGAC 61.427 66.667 0.00 0.00 0.00 5.19
2148 2573 2.351276 CCACCAGTGGCCCTGTAC 59.649 66.667 9.78 1.92 44.73 2.90
2149 2574 2.047274 CACCAGTGGCCCTGTACG 60.047 66.667 9.78 7.24 39.74 3.67
2150 2575 2.203728 ACCAGTGGCCCTGTACGA 60.204 61.111 9.78 0.00 39.74 3.43
2151 2576 2.264794 CCAGTGGCCCTGTACGAC 59.735 66.667 16.96 0.16 39.74 4.34
2152 2577 2.264794 CAGTGGCCCTGTACGACC 59.735 66.667 0.00 0.00 36.37 4.79
2153 2578 3.001406 AGTGGCCCTGTACGACCC 61.001 66.667 0.00 0.00 0.00 4.46
2154 2579 3.315949 GTGGCCCTGTACGACCCA 61.316 66.667 0.00 0.00 0.00 4.51
2155 2580 2.285069 TGGCCCTGTACGACCCAT 60.285 61.111 0.00 0.00 0.00 4.00
2156 2581 2.363975 TGGCCCTGTACGACCCATC 61.364 63.158 0.00 0.00 0.00 3.51
2157 2582 2.064581 GGCCCTGTACGACCCATCT 61.065 63.158 0.00 0.00 0.00 2.90
2158 2583 1.623542 GGCCCTGTACGACCCATCTT 61.624 60.000 0.00 0.00 0.00 2.40
2159 2584 0.179081 GCCCTGTACGACCCATCTTC 60.179 60.000 0.00 0.00 0.00 2.87
2160 2585 1.191535 CCCTGTACGACCCATCTTCA 58.808 55.000 0.00 0.00 0.00 3.02
2161 2586 1.762957 CCCTGTACGACCCATCTTCAT 59.237 52.381 0.00 0.00 0.00 2.57
2162 2587 2.224066 CCCTGTACGACCCATCTTCATC 60.224 54.545 0.00 0.00 0.00 2.92
2163 2588 2.430694 CCTGTACGACCCATCTTCATCA 59.569 50.000 0.00 0.00 0.00 3.07
2164 2589 3.491619 CCTGTACGACCCATCTTCATCAG 60.492 52.174 0.00 0.00 0.00 2.90
2165 2590 2.159099 TGTACGACCCATCTTCATCAGC 60.159 50.000 0.00 0.00 0.00 4.26
2166 2591 0.179000 ACGACCCATCTTCATCAGCC 59.821 55.000 0.00 0.00 0.00 4.85
2167 2592 0.178767 CGACCCATCTTCATCAGCCA 59.821 55.000 0.00 0.00 0.00 4.75
2168 2593 1.407299 CGACCCATCTTCATCAGCCAA 60.407 52.381 0.00 0.00 0.00 4.52
2169 2594 2.019984 GACCCATCTTCATCAGCCAAC 58.980 52.381 0.00 0.00 0.00 3.77
2170 2595 1.355381 ACCCATCTTCATCAGCCAACA 59.645 47.619 0.00 0.00 0.00 3.33
2171 2596 1.747355 CCCATCTTCATCAGCCAACAC 59.253 52.381 0.00 0.00 0.00 3.32
2172 2597 2.619849 CCCATCTTCATCAGCCAACACT 60.620 50.000 0.00 0.00 0.00 3.55
2173 2598 2.681848 CCATCTTCATCAGCCAACACTC 59.318 50.000 0.00 0.00 0.00 3.51
2174 2599 3.340928 CATCTTCATCAGCCAACACTCA 58.659 45.455 0.00 0.00 0.00 3.41
2175 2600 3.490439 TCTTCATCAGCCAACACTCAA 57.510 42.857 0.00 0.00 0.00 3.02
2176 2601 3.405831 TCTTCATCAGCCAACACTCAAG 58.594 45.455 0.00 0.00 0.00 3.02
2177 2602 3.071457 TCTTCATCAGCCAACACTCAAGA 59.929 43.478 0.00 0.00 0.00 3.02
2178 2603 2.771089 TCATCAGCCAACACTCAAGAC 58.229 47.619 0.00 0.00 0.00 3.01
2179 2604 1.808945 CATCAGCCAACACTCAAGACC 59.191 52.381 0.00 0.00 0.00 3.85
2180 2605 0.108585 TCAGCCAACACTCAAGACCC 59.891 55.000 0.00 0.00 0.00 4.46
2181 2606 0.109342 CAGCCAACACTCAAGACCCT 59.891 55.000 0.00 0.00 0.00 4.34
2182 2607 0.398318 AGCCAACACTCAAGACCCTC 59.602 55.000 0.00 0.00 0.00 4.30
2183 2608 0.108585 GCCAACACTCAAGACCCTCA 59.891 55.000 0.00 0.00 0.00 3.86
2184 2609 1.884235 CCAACACTCAAGACCCTCAC 58.116 55.000 0.00 0.00 0.00 3.51
2185 2610 1.502231 CAACACTCAAGACCCTCACG 58.498 55.000 0.00 0.00 0.00 4.35
2186 2611 1.068588 CAACACTCAAGACCCTCACGA 59.931 52.381 0.00 0.00 0.00 4.35
2187 2612 0.962489 ACACTCAAGACCCTCACGAG 59.038 55.000 0.00 0.00 0.00 4.18
2196 2621 4.785453 CCTCACGAGGGGCCAAGC 62.785 72.222 4.39 0.00 44.87 4.01
2213 2638 2.442272 CCTCACGAGGGGGACGAT 60.442 66.667 5.08 0.00 44.87 3.73
2214 2639 2.786495 CCTCACGAGGGGGACGATG 61.786 68.421 5.08 0.00 44.87 3.84
2215 2640 3.432051 CTCACGAGGGGGACGATGC 62.432 68.421 0.00 0.00 34.70 3.91
2216 2641 3.770040 CACGAGGGGGACGATGCA 61.770 66.667 0.00 0.00 34.70 3.96
2217 2642 3.000819 ACGAGGGGGACGATGCAA 61.001 61.111 0.00 0.00 34.70 4.08
2218 2643 2.202932 CGAGGGGGACGATGCAAG 60.203 66.667 0.00 0.00 0.00 4.01
2219 2644 2.721167 CGAGGGGGACGATGCAAGA 61.721 63.158 0.00 0.00 0.00 3.02
2220 2645 1.153349 GAGGGGGACGATGCAAGAC 60.153 63.158 0.00 0.00 0.00 3.01
2221 2646 2.124695 GGGGGACGATGCAAGACC 60.125 66.667 0.00 0.00 0.00 3.85
2222 2647 2.670148 GGGGGACGATGCAAGACCT 61.670 63.158 12.11 0.00 0.00 3.85
2223 2648 1.153349 GGGGACGATGCAAGACCTC 60.153 63.158 12.11 6.19 0.00 3.85
2224 2649 1.153349 GGGACGATGCAAGACCTCC 60.153 63.158 12.11 6.32 0.00 4.30
2225 2650 1.617947 GGGACGATGCAAGACCTCCT 61.618 60.000 12.11 0.00 0.00 3.69
2226 2651 0.179097 GGACGATGCAAGACCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
2227 2652 0.526524 GACGATGCAAGACCTCCTCG 60.527 60.000 0.00 0.00 0.00 4.63
2228 2653 1.227089 CGATGCAAGACCTCCTCGG 60.227 63.158 0.00 0.00 39.35 4.63
2229 2654 1.144936 GATGCAAGACCTCCTCGGG 59.855 63.158 0.00 0.00 36.97 5.14
2230 2655 2.317149 GATGCAAGACCTCCTCGGGG 62.317 65.000 0.00 0.00 36.97 5.73
2231 2656 3.787001 GCAAGACCTCCTCGGGGG 61.787 72.222 0.00 0.00 36.97 5.40
2232 2657 2.284699 CAAGACCTCCTCGGGGGT 60.285 66.667 7.36 7.36 38.70 4.95
2233 2658 2.284699 AAGACCTCCTCGGGGGTG 60.285 66.667 13.36 0.00 35.77 4.61
2238 2663 3.787001 CTCCTCGGGGGTGGCTTC 61.787 72.222 0.00 0.00 36.25 3.86
2239 2664 4.649705 TCCTCGGGGGTGGCTTCA 62.650 66.667 0.00 0.00 36.25 3.02
2240 2665 4.410400 CCTCGGGGGTGGCTTCAC 62.410 72.222 0.00 0.00 40.52 3.18
2249 2674 4.666253 TGGCTTCACCAGGCTGGC 62.666 66.667 33.04 18.15 46.36 4.85
2250 2675 4.357279 GGCTTCACCAGGCTGGCT 62.357 66.667 33.04 17.42 42.67 4.75
2251 2676 2.749441 GCTTCACCAGGCTGGCTC 60.749 66.667 33.04 13.64 42.67 4.70
2252 2677 2.435586 CTTCACCAGGCTGGCTCG 60.436 66.667 33.04 21.15 42.67 5.03
2253 2678 4.704833 TTCACCAGGCTGGCTCGC 62.705 66.667 33.04 0.00 42.67 5.03
2269 2694 3.984749 GCGAGGGGCGGAGAGATC 61.985 72.222 0.00 0.00 41.29 2.75
2270 2695 2.519541 CGAGGGGCGGAGAGATCA 60.520 66.667 0.00 0.00 36.03 2.92
2271 2696 2.127869 CGAGGGGCGGAGAGATCAA 61.128 63.158 0.00 0.00 36.03 2.57
2272 2697 1.745264 GAGGGGCGGAGAGATCAAG 59.255 63.158 0.00 0.00 0.00 3.02
2273 2698 1.753368 GAGGGGCGGAGAGATCAAGG 61.753 65.000 0.00 0.00 0.00 3.61
2274 2699 2.110006 GGGCGGAGAGATCAAGGC 59.890 66.667 0.00 0.00 0.00 4.35
2275 2700 2.279784 GGCGGAGAGATCAAGGCG 60.280 66.667 0.00 0.00 0.00 5.52
2276 2701 2.786495 GGCGGAGAGATCAAGGCGA 61.786 63.158 0.00 0.00 0.00 5.54
2277 2702 1.299773 GCGGAGAGATCAAGGCGAG 60.300 63.158 0.00 0.00 0.00 5.03
2278 2703 1.361993 CGGAGAGATCAAGGCGAGG 59.638 63.158 0.00 0.00 0.00 4.63
2279 2704 1.745264 GGAGAGATCAAGGCGAGGG 59.255 63.158 0.00 0.00 0.00 4.30
2280 2705 1.745264 GAGAGATCAAGGCGAGGGG 59.255 63.158 0.00 0.00 0.00 4.79
2281 2706 2.110006 GAGATCAAGGCGAGGGGC 59.890 66.667 0.00 0.00 42.51 5.80
2282 2707 2.688666 AGATCAAGGCGAGGGGCA 60.689 61.111 0.00 0.00 46.16 5.36
2283 2708 2.514824 GATCAAGGCGAGGGGCAC 60.515 66.667 0.00 0.00 46.16 5.01
2302 2727 1.784525 CCTCGTGAGGTTTCTGTGAC 58.215 55.000 7.79 0.00 43.61 3.67
2303 2728 1.409412 CTCGTGAGGTTTCTGTGACG 58.591 55.000 0.00 0.00 0.00 4.35
2304 2729 0.596600 TCGTGAGGTTTCTGTGACGC 60.597 55.000 0.00 0.00 0.00 5.19
2305 2730 0.874175 CGTGAGGTTTCTGTGACGCA 60.874 55.000 0.00 0.00 0.00 5.24
2306 2731 1.295792 GTGAGGTTTCTGTGACGCAA 58.704 50.000 0.00 0.00 0.00 4.85
2308 2733 0.235926 GAGGTTTCTGTGACGCAAGC 59.764 55.000 0.00 0.00 45.62 4.01
2309 2734 1.166531 AGGTTTCTGTGACGCAAGCC 61.167 55.000 0.00 0.00 45.62 4.35
2310 2735 1.444119 GGTTTCTGTGACGCAAGCCA 61.444 55.000 0.00 0.00 45.62 4.75
2311 2736 0.593128 GTTTCTGTGACGCAAGCCAT 59.407 50.000 0.00 0.00 45.62 4.40
2312 2737 0.592637 TTTCTGTGACGCAAGCCATG 59.407 50.000 0.00 0.00 45.62 3.66
2313 2738 0.250252 TTCTGTGACGCAAGCCATGA 60.250 50.000 0.00 0.00 45.62 3.07
2314 2739 0.950555 TCTGTGACGCAAGCCATGAC 60.951 55.000 0.00 0.00 45.62 3.06
2315 2740 2.231745 CTGTGACGCAAGCCATGACG 62.232 60.000 0.00 0.00 45.62 4.35
2316 2741 2.027073 GTGACGCAAGCCATGACGA 61.027 57.895 0.00 0.00 45.62 4.20
2317 2742 2.027073 TGACGCAAGCCATGACGAC 61.027 57.895 0.00 0.00 45.62 4.34
2318 2743 2.740714 GACGCAAGCCATGACGACC 61.741 63.158 0.00 0.00 45.62 4.79
2319 2744 3.853330 CGCAAGCCATGACGACCG 61.853 66.667 0.00 0.00 32.61 4.79
2320 2745 2.434185 GCAAGCCATGACGACCGA 60.434 61.111 0.00 0.00 0.00 4.69
2321 2746 2.456119 GCAAGCCATGACGACCGAG 61.456 63.158 0.00 0.00 0.00 4.63
2322 2747 1.811266 CAAGCCATGACGACCGAGG 60.811 63.158 0.00 0.00 0.00 4.63
2323 2748 3.665675 AAGCCATGACGACCGAGGC 62.666 63.158 0.00 0.00 45.54 4.70
2325 2750 3.770040 CCATGACGACCGAGGCCA 61.770 66.667 5.01 0.00 0.00 5.36
2326 2751 2.202797 CATGACGACCGAGGCCAG 60.203 66.667 5.01 0.00 0.00 4.85
2327 2752 3.461773 ATGACGACCGAGGCCAGG 61.462 66.667 14.90 14.90 0.00 4.45
2367 2792 2.661866 GCGCACAGTGTCCTCGTT 60.662 61.111 0.30 0.00 0.00 3.85
2368 2793 2.244651 GCGCACAGTGTCCTCGTTT 61.245 57.895 0.30 0.00 0.00 3.60
2369 2794 1.853319 CGCACAGTGTCCTCGTTTC 59.147 57.895 1.61 0.00 0.00 2.78
2370 2795 1.557443 CGCACAGTGTCCTCGTTTCC 61.557 60.000 1.61 0.00 0.00 3.13
2371 2796 0.249911 GCACAGTGTCCTCGTTTCCT 60.250 55.000 1.61 0.00 0.00 3.36
2372 2797 1.784525 CACAGTGTCCTCGTTTCCTC 58.215 55.000 0.00 0.00 0.00 3.71
2373 2798 1.341531 CACAGTGTCCTCGTTTCCTCT 59.658 52.381 0.00 0.00 0.00 3.69
2374 2799 2.040178 ACAGTGTCCTCGTTTCCTCTT 58.960 47.619 0.00 0.00 0.00 2.85
2375 2800 2.434702 ACAGTGTCCTCGTTTCCTCTTT 59.565 45.455 0.00 0.00 0.00 2.52
2376 2801 2.802816 CAGTGTCCTCGTTTCCTCTTTG 59.197 50.000 0.00 0.00 0.00 2.77
2377 2802 2.143925 GTGTCCTCGTTTCCTCTTTGG 58.856 52.381 0.00 0.00 37.10 3.28
2378 2803 1.766496 TGTCCTCGTTTCCTCTTTGGT 59.234 47.619 0.00 0.00 37.07 3.67
2379 2804 2.143925 GTCCTCGTTTCCTCTTTGGTG 58.856 52.381 0.00 0.00 37.07 4.17
2380 2805 0.875059 CCTCGTTTCCTCTTTGGTGC 59.125 55.000 0.00 0.00 37.07 5.01
2381 2806 1.543429 CCTCGTTTCCTCTTTGGTGCT 60.543 52.381 0.00 0.00 37.07 4.40
2382 2807 2.289444 CCTCGTTTCCTCTTTGGTGCTA 60.289 50.000 0.00 0.00 37.07 3.49
2383 2808 3.399330 CTCGTTTCCTCTTTGGTGCTAA 58.601 45.455 0.00 0.00 37.07 3.09
2384 2809 3.811083 TCGTTTCCTCTTTGGTGCTAAA 58.189 40.909 0.00 0.00 37.07 1.85
2385 2810 3.813166 TCGTTTCCTCTTTGGTGCTAAAG 59.187 43.478 2.21 2.21 38.67 1.85
2386 2811 3.813166 CGTTTCCTCTTTGGTGCTAAAGA 59.187 43.478 9.72 9.72 42.63 2.52
2390 2815 2.949177 TCTTTGGTGCTAAAGAGGCA 57.051 45.000 6.63 0.00 40.66 4.75
2391 2816 2.783135 TCTTTGGTGCTAAAGAGGCAG 58.217 47.619 6.63 0.00 40.66 4.85
2392 2817 1.815003 CTTTGGTGCTAAAGAGGCAGG 59.185 52.381 2.43 0.00 39.46 4.85
2393 2818 0.609131 TTGGTGCTAAAGAGGCAGGC 60.609 55.000 0.00 0.00 40.54 4.85
2394 2819 2.109126 GGTGCTAAAGAGGCAGGCG 61.109 63.158 0.00 0.00 40.54 5.52
2395 2820 1.376037 GTGCTAAAGAGGCAGGCGT 60.376 57.895 0.00 0.00 40.54 5.68
2396 2821 0.108329 GTGCTAAAGAGGCAGGCGTA 60.108 55.000 0.00 0.00 40.54 4.42
2397 2822 0.175760 TGCTAAAGAGGCAGGCGTAG 59.824 55.000 0.00 0.00 34.56 3.51
2398 2823 0.530870 GCTAAAGAGGCAGGCGTAGG 60.531 60.000 0.00 0.00 0.00 3.18
2409 2834 3.902086 GCGTAGGCGAGGAGTCCC 61.902 72.222 5.25 0.00 41.33 4.46
2410 2835 3.584052 CGTAGGCGAGGAGTCCCG 61.584 72.222 5.25 10.54 41.33 5.14
2411 2836 2.124403 GTAGGCGAGGAGTCCCGA 60.124 66.667 20.17 1.18 37.58 5.14
2412 2837 2.188161 GTAGGCGAGGAGTCCCGAG 61.188 68.421 20.17 7.79 37.58 4.63
2413 2838 3.417167 TAGGCGAGGAGTCCCGAGG 62.417 68.421 20.17 3.60 37.58 4.63
2416 2841 2.835431 CGAGGAGTCCCGAGGCAT 60.835 66.667 5.25 0.00 37.58 4.40
2417 2842 2.851071 CGAGGAGTCCCGAGGCATC 61.851 68.421 5.25 0.00 37.58 3.91
2418 2843 1.758514 GAGGAGTCCCGAGGCATCA 60.759 63.158 5.25 0.00 37.58 3.07
2419 2844 1.743321 GAGGAGTCCCGAGGCATCAG 61.743 65.000 5.25 0.00 37.58 2.90
2420 2845 2.801631 GGAGTCCCGAGGCATCAGG 61.802 68.421 0.00 0.00 0.00 3.86
2421 2846 3.453070 GAGTCCCGAGGCATCAGGC 62.453 68.421 0.00 0.00 43.74 4.85
2432 2857 2.747396 GCATCAGGCAAATGTTTCCA 57.253 45.000 0.00 0.00 43.97 3.53
2433 2858 3.255969 GCATCAGGCAAATGTTTCCAT 57.744 42.857 0.00 0.00 43.97 3.41
2434 2859 4.389890 GCATCAGGCAAATGTTTCCATA 57.610 40.909 0.00 0.00 43.97 2.74
2435 2860 4.952460 GCATCAGGCAAATGTTTCCATAT 58.048 39.130 0.00 0.00 43.97 1.78
2436 2861 4.986659 GCATCAGGCAAATGTTTCCATATC 59.013 41.667 0.00 0.00 43.97 1.63
2437 2862 4.898829 TCAGGCAAATGTTTCCATATCG 57.101 40.909 0.00 0.00 0.00 2.92
2438 2863 3.631686 TCAGGCAAATGTTTCCATATCGG 59.368 43.478 0.00 0.00 0.00 4.18
2439 2864 3.381272 CAGGCAAATGTTTCCATATCGGT 59.619 43.478 0.00 0.00 35.57 4.69
2440 2865 3.381272 AGGCAAATGTTTCCATATCGGTG 59.619 43.478 0.00 0.00 35.57 4.94
2441 2866 3.115554 GCAAATGTTTCCATATCGGTGC 58.884 45.455 0.00 0.00 35.57 5.01
2442 2867 3.428725 GCAAATGTTTCCATATCGGTGCA 60.429 43.478 0.00 0.00 35.57 4.57
2443 2868 4.742417 CAAATGTTTCCATATCGGTGCAA 58.258 39.130 0.00 0.00 35.57 4.08
2444 2869 4.370364 AATGTTTCCATATCGGTGCAAC 57.630 40.909 0.00 0.00 35.57 4.17
2445 2870 2.784347 TGTTTCCATATCGGTGCAACA 58.216 42.857 0.98 0.00 39.98 3.33
2446 2871 3.149981 TGTTTCCATATCGGTGCAACAA 58.850 40.909 0.98 0.00 39.98 2.83
2447 2872 3.190327 TGTTTCCATATCGGTGCAACAAG 59.810 43.478 0.98 0.00 39.98 3.16
2448 2873 3.342377 TTCCATATCGGTGCAACAAGA 57.658 42.857 0.98 0.00 39.98 3.02
2449 2874 2.627945 TCCATATCGGTGCAACAAGAC 58.372 47.619 0.98 0.00 39.98 3.01
2450 2875 1.670811 CCATATCGGTGCAACAAGACC 59.329 52.381 0.98 0.00 39.98 3.85
2451 2876 2.355197 CATATCGGTGCAACAAGACCA 58.645 47.619 0.98 0.00 39.98 4.02
2452 2877 2.552599 TATCGGTGCAACAAGACCAA 57.447 45.000 0.98 0.00 39.98 3.67
2453 2878 1.238439 ATCGGTGCAACAAGACCAAG 58.762 50.000 0.98 0.00 39.98 3.61
2454 2879 0.179234 TCGGTGCAACAAGACCAAGA 59.821 50.000 0.98 0.00 39.98 3.02
2455 2880 0.307760 CGGTGCAACAAGACCAAGAC 59.692 55.000 0.98 0.00 39.98 3.01
2456 2881 0.668535 GGTGCAACAAGACCAAGACC 59.331 55.000 0.00 0.00 39.98 3.85
2457 2882 1.388547 GTGCAACAAGACCAAGACCA 58.611 50.000 0.00 0.00 36.32 4.02
2458 2883 1.334869 GTGCAACAAGACCAAGACCAG 59.665 52.381 0.00 0.00 36.32 4.00
2459 2884 0.312102 GCAACAAGACCAAGACCAGC 59.688 55.000 0.00 0.00 0.00 4.85
2460 2885 1.679139 CAACAAGACCAAGACCAGCA 58.321 50.000 0.00 0.00 0.00 4.41
2461 2886 1.605710 CAACAAGACCAAGACCAGCAG 59.394 52.381 0.00 0.00 0.00 4.24
2462 2887 0.109342 ACAAGACCAAGACCAGCAGG 59.891 55.000 0.00 0.00 42.21 4.85
2463 2888 0.397941 CAAGACCAAGACCAGCAGGA 59.602 55.000 0.35 0.00 38.69 3.86
2464 2889 0.398318 AAGACCAAGACCAGCAGGAC 59.602 55.000 0.35 0.00 38.69 3.85
2465 2890 1.374758 GACCAAGACCAGCAGGACG 60.375 63.158 0.35 0.00 38.69 4.79
2466 2891 2.046892 CCAAGACCAGCAGGACGG 60.047 66.667 0.35 0.00 38.69 4.79
2467 2892 2.743928 CAAGACCAGCAGGACGGC 60.744 66.667 0.35 0.00 38.69 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.155093 AGGATCAAATTTGCACATCGC 57.845 42.857 13.54 6.15 42.89 4.58
47 48 5.128919 GCTGTGATTGGTCTAGGATCAAAT 58.871 41.667 0.00 0.00 36.21 2.32
52 53 1.202580 GCGCTGTGATTGGTCTAGGAT 60.203 52.381 0.00 0.00 0.00 3.24
73 74 1.152247 TCAGCAGAGTCCACCTGGT 60.152 57.895 0.00 0.00 42.38 4.00
77 78 1.214062 CGAGTCAGCAGAGTCCACC 59.786 63.158 8.24 0.00 40.44 4.61
101 102 0.317269 GCAAATATGCGCACGCTGAT 60.317 50.000 14.90 0.00 43.83 2.90
129 130 3.719268 TGATTAGAAGGAAAGGCAGCA 57.281 42.857 0.00 0.00 0.00 4.41
130 131 3.129462 GGTTGATTAGAAGGAAAGGCAGC 59.871 47.826 0.00 0.00 0.00 5.25
182 186 4.265904 TCGGAGTCAACAGCTTAATCAA 57.734 40.909 0.00 0.00 0.00 2.57
196 200 2.202892 GGGGCAACGATCGGAGTC 60.203 66.667 20.98 12.48 37.60 3.36
230 240 3.782443 GAGGGGGCCGACGAACAT 61.782 66.667 0.00 0.00 0.00 2.71
240 250 1.223211 GCAGAGAAAGAGAGGGGGC 59.777 63.158 0.00 0.00 0.00 5.80
262 279 2.261671 GACGAGCAGGGAAAGCGA 59.738 61.111 0.00 0.00 37.01 4.93
301 318 3.424703 CATCACTCCAGGAAACCATGTT 58.575 45.455 0.00 0.00 0.00 2.71
302 319 2.291153 CCATCACTCCAGGAAACCATGT 60.291 50.000 0.00 0.00 0.00 3.21
321 338 1.000359 TGACGAGGAGCTGGATCCA 60.000 57.895 15.27 15.27 42.26 3.41
340 357 4.803426 GACAGAGTCGCCGCCCAG 62.803 72.222 0.00 0.00 0.00 4.45
362 379 0.253327 GGGAAAAGAGCTCACCGGAT 59.747 55.000 17.77 0.00 0.00 4.18
377 394 1.341285 CCCATTCAGATGTGCAGGGAA 60.341 52.381 7.94 0.00 36.96 3.97
433 476 1.071542 TCCATTCGGAGCAGACAACAA 59.928 47.619 0.00 0.00 35.91 2.83
435 478 3.532896 TCCATTCGGAGCAGACAAC 57.467 52.632 0.00 0.00 35.91 3.32
535 578 5.251764 CACAACTCAGGAATCTTCTTCCAT 58.748 41.667 6.76 0.00 41.00 3.41
552 595 5.190677 ACTACTAACCTTTTGTGCACAACT 58.809 37.500 31.17 15.36 35.28 3.16
589 632 5.305585 TGGTAACTGAATCTGAAGTTCACC 58.694 41.667 0.08 0.00 37.74 4.02
613 664 9.908747 ATCTACATCTACAACTAGTCACTACTT 57.091 33.333 0.00 0.00 37.15 2.24
615 666 8.561212 CCATCTACATCTACAACTAGTCACTAC 58.439 40.741 0.00 0.00 0.00 2.73
622 673 7.364200 GCACTACCATCTACATCTACAACTAG 58.636 42.308 0.00 0.00 0.00 2.57
664 725 9.941325 TCACATATTCACTTAAATGGCAAAAAT 57.059 25.926 0.00 0.00 0.00 1.82
665 726 9.941325 ATCACATATTCACTTAAATGGCAAAAA 57.059 25.926 0.00 0.00 0.00 1.94
762 826 9.921637 TTGGACACCAATCTCAATTATTTAAAC 57.078 29.630 0.00 0.00 38.75 2.01
830 920 7.012327 TGACACCAGATTCAGTTAACTTTTCAG 59.988 37.037 5.07 0.62 0.00 3.02
1048 1286 3.295093 TGACAACATTTTTCCTGAGCCA 58.705 40.909 0.00 0.00 0.00 4.75
1057 1295 7.846644 TTTCTTCAGCATTGACAACATTTTT 57.153 28.000 0.00 0.00 31.71 1.94
1100 1338 7.559590 AGATATTTTTCCATCTGTTCCTTCG 57.440 36.000 0.00 0.00 0.00 3.79
1329 1569 4.474651 TGCTCCCTCTCTTCCATCAATTTA 59.525 41.667 0.00 0.00 0.00 1.40
1380 1641 7.066163 TGCTTGAATAAGTCACCAATCATGTAG 59.934 37.037 0.00 0.00 35.39 2.74
1433 1694 4.265856 TCTAGCATCTCCCTAACCTTCA 57.734 45.455 0.00 0.00 0.00 3.02
1486 1747 8.918202 AAGTACACCAAATTAAGATCAACAGA 57.082 30.769 0.00 0.00 0.00 3.41
1487 1748 9.965824 AAAAGTACACCAAATTAAGATCAACAG 57.034 29.630 0.00 0.00 0.00 3.16
1488 1749 9.743057 CAAAAGTACACCAAATTAAGATCAACA 57.257 29.630 0.00 0.00 0.00 3.33
1489 1750 9.744468 ACAAAAGTACACCAAATTAAGATCAAC 57.256 29.630 0.00 0.00 0.00 3.18
1499 1760 9.528018 CAACTTCATTACAAAAGTACACCAAAT 57.472 29.630 0.00 0.00 34.71 2.32
1500 1761 8.524487 ACAACTTCATTACAAAAGTACACCAAA 58.476 29.630 0.00 0.00 34.71 3.28
1501 1762 8.057536 ACAACTTCATTACAAAAGTACACCAA 57.942 30.769 0.00 0.00 34.71 3.67
1502 1763 7.633193 ACAACTTCATTACAAAAGTACACCA 57.367 32.000 0.00 0.00 34.71 4.17
1503 1764 8.920509 AAACAACTTCATTACAAAAGTACACC 57.079 30.769 0.00 0.00 34.71 4.16
1504 1765 9.562583 TGAAACAACTTCATTACAAAAGTACAC 57.437 29.630 0.00 0.00 39.20 2.90
1505 1766 9.781834 CTGAAACAACTTCATTACAAAAGTACA 57.218 29.630 0.00 0.00 43.20 2.90
1506 1767 9.783256 ACTGAAACAACTTCATTACAAAAGTAC 57.217 29.630 0.00 0.00 43.20 2.73
1507 1768 9.781834 CACTGAAACAACTTCATTACAAAAGTA 57.218 29.630 0.00 0.00 43.20 2.24
1508 1769 7.759433 CCACTGAAACAACTTCATTACAAAAGT 59.241 33.333 0.00 0.00 43.20 2.66
1509 1770 7.222611 CCCACTGAAACAACTTCATTACAAAAG 59.777 37.037 0.00 0.00 43.20 2.27
1510 1771 7.038659 CCCACTGAAACAACTTCATTACAAAA 58.961 34.615 0.00 0.00 43.20 2.44
1511 1772 6.568869 CCCACTGAAACAACTTCATTACAAA 58.431 36.000 0.00 0.00 43.20 2.83
1527 1834 4.407296 ACCAAATTAAACAAGCCCACTGAA 59.593 37.500 0.00 0.00 0.00 3.02
1548 1859 6.407202 ACAAGTCCACTCATACTAATTCACC 58.593 40.000 0.00 0.00 0.00 4.02
1732 2076 8.183536 TGCAGTAAACTGAATACAAATATGCAG 58.816 33.333 14.21 1.38 46.59 4.41
1733 2077 8.049655 TGCAGTAAACTGAATACAAATATGCA 57.950 30.769 14.21 0.00 46.59 3.96
1829 2254 9.533253 GGTGTTTACTTCAGTTAACTACAACTA 57.467 33.333 8.04 0.00 38.11 2.24
1830 2255 7.496920 GGGTGTTTACTTCAGTTAACTACAACT 59.503 37.037 16.18 3.46 38.11 3.16
1831 2256 7.496920 AGGGTGTTTACTTCAGTTAACTACAAC 59.503 37.037 8.04 9.63 38.11 3.32
1832 2257 7.567458 AGGGTGTTTACTTCAGTTAACTACAA 58.433 34.615 8.04 3.53 38.11 2.41
1833 2258 7.128234 AGGGTGTTTACTTCAGTTAACTACA 57.872 36.000 8.04 4.42 38.11 2.74
1834 2259 9.201127 CTAAGGGTGTTTACTTCAGTTAACTAC 57.799 37.037 8.04 1.59 38.11 2.73
1835 2260 8.927411 ACTAAGGGTGTTTACTTCAGTTAACTA 58.073 33.333 8.04 0.00 38.11 2.24
1837 2262 8.442632 AACTAAGGGTGTTTACTTCAGTTAAC 57.557 34.615 0.00 0.00 37.87 2.01
1863 2288 9.909644 CTAAGTGAGTTTACTTCTGTTAGCTTA 57.090 33.333 0.00 0.00 41.01 3.09
1865 2290 7.953752 ACTAAGTGAGTTTACTTCTGTTAGCT 58.046 34.615 0.00 0.00 41.01 3.32
1880 2305 5.362263 TCGGTTTGCTTAAACTAAGTGAGT 58.638 37.500 0.00 0.00 41.56 3.41
1881 2306 5.917541 TCGGTTTGCTTAAACTAAGTGAG 57.082 39.130 0.00 0.00 38.07 3.51
1882 2307 6.870971 ATTCGGTTTGCTTAAACTAAGTGA 57.129 33.333 0.00 0.00 38.07 3.41
1883 2308 7.096230 CCAAATTCGGTTTGCTTAAACTAAGTG 60.096 37.037 8.19 0.00 44.69 3.16
1884 2309 6.921307 CCAAATTCGGTTTGCTTAAACTAAGT 59.079 34.615 8.19 0.00 44.69 2.24
1885 2310 7.142680 TCCAAATTCGGTTTGCTTAAACTAAG 58.857 34.615 8.19 0.00 44.69 2.18
1886 2311 7.040473 TCCAAATTCGGTTTGCTTAAACTAA 57.960 32.000 8.19 0.00 44.69 2.24
1887 2312 6.636562 TCCAAATTCGGTTTGCTTAAACTA 57.363 33.333 8.19 0.00 44.69 2.24
1897 2322 5.010617 AGTTAACTGCATCCAAATTCGGTTT 59.989 36.000 7.48 0.00 31.33 3.27
1901 2326 5.295431 TCAGTTAACTGCATCCAAATTCG 57.705 39.130 27.49 2.87 43.46 3.34
1988 2413 6.707440 TGCAAGTTCAGGAAAATTCAGTAA 57.293 33.333 0.00 0.00 0.00 2.24
1993 2418 6.091305 GGCTAATTGCAAGTTCAGGAAAATTC 59.909 38.462 4.05 0.00 45.15 2.17
2000 2425 3.256631 ACTTGGCTAATTGCAAGTTCAGG 59.743 43.478 4.05 5.08 45.15 3.86
2009 2434 5.393962 CAGTTAACTGACTTGGCTAATTGC 58.606 41.667 28.17 0.00 46.59 3.56
2045 2470 6.428159 ACCACTTACTATAAATAGCATGCTGC 59.572 38.462 30.42 0.00 45.46 5.25
2071 2496 3.998672 GTTCCCAGGACGCCGACA 61.999 66.667 0.00 0.00 0.00 4.35
2078 2503 3.714001 GACCCCCGTTCCCAGGAC 61.714 72.222 0.00 0.00 0.00 3.85
2093 2518 2.360475 GCAGGCAAGTCTGGGGAC 60.360 66.667 3.62 0.00 42.41 4.46
2094 2519 3.650950 GGCAGGCAAGTCTGGGGA 61.651 66.667 3.62 0.00 35.43 4.81
2095 2520 3.655211 AGGCAGGCAAGTCTGGGG 61.655 66.667 3.62 0.00 35.43 4.96
2096 2521 2.360852 CAGGCAGGCAAGTCTGGG 60.361 66.667 3.62 0.00 37.58 4.45
2097 2522 3.060615 GCAGGCAGGCAAGTCTGG 61.061 66.667 12.46 0.00 41.45 3.86
2098 2523 3.429141 CGCAGGCAGGCAAGTCTG 61.429 66.667 7.14 7.14 43.93 3.51
2099 2524 3.630013 TCGCAGGCAGGCAAGTCT 61.630 61.111 0.00 0.00 0.00 3.24
2100 2525 3.426568 GTCGCAGGCAGGCAAGTC 61.427 66.667 0.00 0.00 0.00 3.01
2136 2561 3.001406 GGGTCGTACAGGGCCACT 61.001 66.667 6.18 0.00 0.00 4.00
2137 2562 2.588856 GATGGGTCGTACAGGGCCAC 62.589 65.000 6.18 0.00 0.00 5.01
2138 2563 2.285069 ATGGGTCGTACAGGGCCA 60.285 61.111 6.18 0.00 0.00 5.36
2139 2564 1.623542 AAGATGGGTCGTACAGGGCC 61.624 60.000 0.00 0.00 0.00 5.80
2140 2565 0.179081 GAAGATGGGTCGTACAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
2141 2566 1.191535 TGAAGATGGGTCGTACAGGG 58.808 55.000 0.00 0.00 0.00 4.45
2142 2567 2.430694 TGATGAAGATGGGTCGTACAGG 59.569 50.000 0.00 0.00 0.00 4.00
2143 2568 3.711086 CTGATGAAGATGGGTCGTACAG 58.289 50.000 0.00 0.00 0.00 2.74
2144 2569 2.159099 GCTGATGAAGATGGGTCGTACA 60.159 50.000 0.00 0.00 0.00 2.90
2145 2570 2.474816 GCTGATGAAGATGGGTCGTAC 58.525 52.381 0.00 0.00 0.00 3.67
2146 2571 1.412710 GGCTGATGAAGATGGGTCGTA 59.587 52.381 0.00 0.00 0.00 3.43
2147 2572 0.179000 GGCTGATGAAGATGGGTCGT 59.821 55.000 0.00 0.00 0.00 4.34
2148 2573 0.178767 TGGCTGATGAAGATGGGTCG 59.821 55.000 0.00 0.00 0.00 4.79
2149 2574 2.019984 GTTGGCTGATGAAGATGGGTC 58.980 52.381 0.00 0.00 0.00 4.46
2150 2575 1.355381 TGTTGGCTGATGAAGATGGGT 59.645 47.619 0.00 0.00 0.00 4.51
2151 2576 1.747355 GTGTTGGCTGATGAAGATGGG 59.253 52.381 0.00 0.00 0.00 4.00
2152 2577 2.681848 GAGTGTTGGCTGATGAAGATGG 59.318 50.000 0.00 0.00 0.00 3.51
2153 2578 3.340928 TGAGTGTTGGCTGATGAAGATG 58.659 45.455 0.00 0.00 0.00 2.90
2154 2579 3.708403 TGAGTGTTGGCTGATGAAGAT 57.292 42.857 0.00 0.00 0.00 2.40
2155 2580 3.071457 TCTTGAGTGTTGGCTGATGAAGA 59.929 43.478 0.00 0.00 0.00 2.87
2156 2581 3.188048 GTCTTGAGTGTTGGCTGATGAAG 59.812 47.826 0.00 0.00 0.00 3.02
2157 2582 3.141398 GTCTTGAGTGTTGGCTGATGAA 58.859 45.455 0.00 0.00 0.00 2.57
2158 2583 2.550855 GGTCTTGAGTGTTGGCTGATGA 60.551 50.000 0.00 0.00 0.00 2.92
2159 2584 1.808945 GGTCTTGAGTGTTGGCTGATG 59.191 52.381 0.00 0.00 0.00 3.07
2160 2585 1.271597 GGGTCTTGAGTGTTGGCTGAT 60.272 52.381 0.00 0.00 0.00 2.90
2161 2586 0.108585 GGGTCTTGAGTGTTGGCTGA 59.891 55.000 0.00 0.00 0.00 4.26
2162 2587 0.109342 AGGGTCTTGAGTGTTGGCTG 59.891 55.000 0.00 0.00 0.00 4.85
2163 2588 0.398318 GAGGGTCTTGAGTGTTGGCT 59.602 55.000 0.00 0.00 0.00 4.75
2164 2589 0.108585 TGAGGGTCTTGAGTGTTGGC 59.891 55.000 0.00 0.00 0.00 4.52
2165 2590 1.873903 CGTGAGGGTCTTGAGTGTTGG 60.874 57.143 0.00 0.00 0.00 3.77
2166 2591 1.068588 TCGTGAGGGTCTTGAGTGTTG 59.931 52.381 0.00 0.00 0.00 3.33
2167 2592 1.341531 CTCGTGAGGGTCTTGAGTGTT 59.658 52.381 0.00 0.00 0.00 3.32
2168 2593 0.962489 CTCGTGAGGGTCTTGAGTGT 59.038 55.000 0.00 0.00 0.00 3.55
2169 2594 0.244994 CCTCGTGAGGGTCTTGAGTG 59.755 60.000 8.09 0.00 44.87 3.51
2170 2595 2.659800 CCTCGTGAGGGTCTTGAGT 58.340 57.895 8.09 0.00 44.87 3.41
2180 2605 4.785453 GGCTTGGCCCCTCGTGAG 62.785 72.222 0.00 0.00 44.06 3.51
2197 2622 2.808315 CATCGTCCCCCTCGTGAG 59.192 66.667 0.00 0.00 0.00 3.51
2198 2623 3.458163 GCATCGTCCCCCTCGTGA 61.458 66.667 0.00 0.00 0.00 4.35
2199 2624 3.309436 TTGCATCGTCCCCCTCGTG 62.309 63.158 0.00 0.00 0.00 4.35
2200 2625 3.000819 TTGCATCGTCCCCCTCGT 61.001 61.111 0.00 0.00 0.00 4.18
2201 2626 2.202932 CTTGCATCGTCCCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
2202 2627 1.153349 GTCTTGCATCGTCCCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
2203 2628 2.670148 GGTCTTGCATCGTCCCCCT 61.670 63.158 0.00 0.00 0.00 4.79
2204 2629 2.124695 GGTCTTGCATCGTCCCCC 60.125 66.667 0.00 0.00 0.00 5.40
2205 2630 1.153349 GAGGTCTTGCATCGTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
2206 2631 1.153349 GGAGGTCTTGCATCGTCCC 60.153 63.158 11.95 0.00 33.97 4.46
2207 2632 0.179097 GAGGAGGTCTTGCATCGTCC 60.179 60.000 13.97 13.97 36.97 4.79
2208 2633 0.526524 CGAGGAGGTCTTGCATCGTC 60.527 60.000 0.00 0.00 38.81 4.20
2209 2634 1.513158 CGAGGAGGTCTTGCATCGT 59.487 57.895 0.00 0.00 0.00 3.73
2210 2635 1.227089 CCGAGGAGGTCTTGCATCG 60.227 63.158 0.00 0.00 34.51 3.84
2211 2636 1.144936 CCCGAGGAGGTCTTGCATC 59.855 63.158 0.00 0.00 38.74 3.91
2212 2637 2.370445 CCCCGAGGAGGTCTTGCAT 61.370 63.158 0.00 0.00 38.74 3.96
2213 2638 3.003173 CCCCGAGGAGGTCTTGCA 61.003 66.667 0.00 0.00 38.74 4.08
2214 2639 3.787001 CCCCCGAGGAGGTCTTGC 61.787 72.222 0.00 0.00 38.24 4.01
2215 2640 2.284699 ACCCCCGAGGAGGTCTTG 60.285 66.667 0.00 0.00 39.89 3.02
2216 2641 2.284699 CACCCCCGAGGAGGTCTT 60.285 66.667 0.00 0.00 39.89 3.01
2217 2642 4.400251 CCACCCCCGAGGAGGTCT 62.400 72.222 0.00 0.00 41.33 3.85
2221 2646 3.787001 GAAGCCACCCCCGAGGAG 61.787 72.222 0.00 0.00 39.89 3.69
2222 2647 4.649705 TGAAGCCACCCCCGAGGA 62.650 66.667 0.00 0.00 39.89 3.71
2223 2648 4.410400 GTGAAGCCACCCCCGAGG 62.410 72.222 0.00 0.00 43.78 4.63
2231 2656 2.674380 CCAGCCTGGTGAAGCCAC 60.674 66.667 1.39 0.00 43.61 5.01
2232 2657 4.666253 GCCAGCCTGGTGAAGCCA 62.666 66.667 13.35 0.00 46.95 4.75
2233 2658 4.357279 AGCCAGCCTGGTGAAGCC 62.357 66.667 13.35 0.00 40.46 4.35
2234 2659 2.749441 GAGCCAGCCTGGTGAAGC 60.749 66.667 13.35 0.00 40.46 3.86
2235 2660 2.435586 CGAGCCAGCCTGGTGAAG 60.436 66.667 13.35 0.00 40.46 3.02
2236 2661 4.704833 GCGAGCCAGCCTGGTGAA 62.705 66.667 13.35 0.00 40.46 3.18
2252 2677 3.984749 GATCTCTCCGCCCCTCGC 61.985 72.222 0.00 0.00 36.73 5.03
2253 2678 2.081425 CTTGATCTCTCCGCCCCTCG 62.081 65.000 0.00 0.00 38.08 4.63
2254 2679 1.745264 CTTGATCTCTCCGCCCCTC 59.255 63.158 0.00 0.00 0.00 4.30
2255 2680 1.764054 CCTTGATCTCTCCGCCCCT 60.764 63.158 0.00 0.00 0.00 4.79
2256 2681 2.825264 CCTTGATCTCTCCGCCCC 59.175 66.667 0.00 0.00 0.00 5.80
2257 2682 2.110006 GCCTTGATCTCTCCGCCC 59.890 66.667 0.00 0.00 0.00 6.13
2258 2683 2.279784 CGCCTTGATCTCTCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
2259 2684 1.299773 CTCGCCTTGATCTCTCCGC 60.300 63.158 0.00 0.00 0.00 5.54
2260 2685 1.361993 CCTCGCCTTGATCTCTCCG 59.638 63.158 0.00 0.00 0.00 4.63
2261 2686 1.745264 CCCTCGCCTTGATCTCTCC 59.255 63.158 0.00 0.00 0.00 3.71
2262 2687 1.745264 CCCCTCGCCTTGATCTCTC 59.255 63.158 0.00 0.00 0.00 3.20
2263 2688 2.439104 GCCCCTCGCCTTGATCTCT 61.439 63.158 0.00 0.00 0.00 3.10
2264 2689 2.110006 GCCCCTCGCCTTGATCTC 59.890 66.667 0.00 0.00 0.00 2.75
2265 2690 2.688666 TGCCCCTCGCCTTGATCT 60.689 61.111 0.00 0.00 36.24 2.75
2266 2691 2.514824 GTGCCCCTCGCCTTGATC 60.515 66.667 0.00 0.00 36.24 2.92
2267 2692 4.115199 GGTGCCCCTCGCCTTGAT 62.115 66.667 0.00 0.00 42.12 2.57
2284 2709 1.409412 CGTCACAGAAACCTCACGAG 58.591 55.000 0.00 0.00 0.00 4.18
2285 2710 0.596600 GCGTCACAGAAACCTCACGA 60.597 55.000 0.00 0.00 0.00 4.35
2286 2711 0.874175 TGCGTCACAGAAACCTCACG 60.874 55.000 0.00 0.00 0.00 4.35
2287 2712 1.261619 CTTGCGTCACAGAAACCTCAC 59.738 52.381 0.00 0.00 0.00 3.51
2288 2713 1.581934 CTTGCGTCACAGAAACCTCA 58.418 50.000 0.00 0.00 0.00 3.86
2289 2714 0.235926 GCTTGCGTCACAGAAACCTC 59.764 55.000 0.00 0.00 0.00 3.85
2290 2715 1.166531 GGCTTGCGTCACAGAAACCT 61.167 55.000 0.00 0.00 0.00 3.50
2291 2716 1.282875 GGCTTGCGTCACAGAAACC 59.717 57.895 0.00 0.00 0.00 3.27
2292 2717 0.593128 ATGGCTTGCGTCACAGAAAC 59.407 50.000 0.00 0.00 0.00 2.78
2293 2718 0.592637 CATGGCTTGCGTCACAGAAA 59.407 50.000 0.00 0.00 0.00 2.52
2294 2719 0.250252 TCATGGCTTGCGTCACAGAA 60.250 50.000 0.00 0.00 0.00 3.02
2295 2720 0.950555 GTCATGGCTTGCGTCACAGA 60.951 55.000 0.00 0.00 0.00 3.41
2296 2721 1.499056 GTCATGGCTTGCGTCACAG 59.501 57.895 0.00 0.00 0.00 3.66
2297 2722 2.316867 CGTCATGGCTTGCGTCACA 61.317 57.895 0.00 0.00 0.00 3.58
2298 2723 2.027073 TCGTCATGGCTTGCGTCAC 61.027 57.895 13.58 0.31 0.00 3.67
2299 2724 2.027073 GTCGTCATGGCTTGCGTCA 61.027 57.895 13.58 0.00 0.00 4.35
2300 2725 2.740714 GGTCGTCATGGCTTGCGTC 61.741 63.158 13.58 9.82 0.00 5.19
2301 2726 2.742372 GGTCGTCATGGCTTGCGT 60.742 61.111 13.58 0.00 0.00 5.24
2302 2727 3.853330 CGGTCGTCATGGCTTGCG 61.853 66.667 0.00 9.67 0.00 4.85
2303 2728 2.434185 TCGGTCGTCATGGCTTGC 60.434 61.111 0.00 0.00 0.00 4.01
2304 2729 1.811266 CCTCGGTCGTCATGGCTTG 60.811 63.158 0.00 0.00 0.00 4.01
2305 2730 2.579201 CCTCGGTCGTCATGGCTT 59.421 61.111 0.00 0.00 0.00 4.35
2306 2731 4.148825 GCCTCGGTCGTCATGGCT 62.149 66.667 0.00 0.00 40.36 4.75
2308 2733 3.723235 CTGGCCTCGGTCGTCATGG 62.723 68.421 3.32 0.00 0.00 3.66
2309 2734 2.202797 CTGGCCTCGGTCGTCATG 60.203 66.667 3.32 0.00 0.00 3.07
2310 2735 3.461773 CCTGGCCTCGGTCGTCAT 61.462 66.667 3.32 0.00 0.00 3.06
2350 2775 2.159272 GAAACGAGGACACTGTGCGC 62.159 60.000 7.90 0.00 0.00 6.09
2351 2776 1.557443 GGAAACGAGGACACTGTGCG 61.557 60.000 7.90 5.86 0.00 5.34
2352 2777 0.249911 AGGAAACGAGGACACTGTGC 60.250 55.000 7.90 0.62 0.00 4.57
2353 2778 1.341531 AGAGGAAACGAGGACACTGTG 59.658 52.381 6.19 6.19 0.00 3.66
2354 2779 1.705873 AGAGGAAACGAGGACACTGT 58.294 50.000 0.00 0.00 0.00 3.55
2355 2780 2.802816 CAAAGAGGAAACGAGGACACTG 59.197 50.000 0.00 0.00 0.00 3.66
2356 2781 2.224305 CCAAAGAGGAAACGAGGACACT 60.224 50.000 0.00 0.00 41.22 3.55
2357 2782 2.143925 CCAAAGAGGAAACGAGGACAC 58.856 52.381 0.00 0.00 41.22 3.67
2358 2783 1.766496 ACCAAAGAGGAAACGAGGACA 59.234 47.619 0.00 0.00 41.22 4.02
2359 2784 2.143925 CACCAAAGAGGAAACGAGGAC 58.856 52.381 0.00 0.00 41.22 3.85
2360 2785 1.542547 GCACCAAAGAGGAAACGAGGA 60.543 52.381 0.00 0.00 41.22 3.71
2361 2786 0.875059 GCACCAAAGAGGAAACGAGG 59.125 55.000 0.00 0.00 41.22 4.63
2362 2787 1.884235 AGCACCAAAGAGGAAACGAG 58.116 50.000 0.00 0.00 41.22 4.18
2363 2788 3.478857 TTAGCACCAAAGAGGAAACGA 57.521 42.857 0.00 0.00 41.22 3.85
2364 2789 3.813166 TCTTTAGCACCAAAGAGGAAACG 59.187 43.478 4.58 0.00 39.13 3.60
2371 2796 2.553028 CCTGCCTCTTTAGCACCAAAGA 60.553 50.000 7.63 7.63 41.18 2.52
2372 2797 1.815003 CCTGCCTCTTTAGCACCAAAG 59.185 52.381 0.00 0.00 36.01 2.77
2373 2798 1.909700 CCTGCCTCTTTAGCACCAAA 58.090 50.000 0.00 0.00 36.01 3.28
2374 2799 0.609131 GCCTGCCTCTTTAGCACCAA 60.609 55.000 0.00 0.00 36.01 3.67
2375 2800 1.002134 GCCTGCCTCTTTAGCACCA 60.002 57.895 0.00 0.00 36.01 4.17
2376 2801 2.109126 CGCCTGCCTCTTTAGCACC 61.109 63.158 0.00 0.00 36.01 5.01
2377 2802 0.108329 TACGCCTGCCTCTTTAGCAC 60.108 55.000 0.00 0.00 36.01 4.40
2378 2803 0.175760 CTACGCCTGCCTCTTTAGCA 59.824 55.000 0.00 0.00 38.82 3.49
2379 2804 0.530870 CCTACGCCTGCCTCTTTAGC 60.531 60.000 0.00 0.00 0.00 3.09
2380 2805 0.530870 GCCTACGCCTGCCTCTTTAG 60.531 60.000 0.00 0.00 0.00 1.85
2381 2806 1.520666 GCCTACGCCTGCCTCTTTA 59.479 57.895 0.00 0.00 0.00 1.85
2382 2807 2.269241 GCCTACGCCTGCCTCTTT 59.731 61.111 0.00 0.00 0.00 2.52
2383 2808 4.148825 CGCCTACGCCTGCCTCTT 62.149 66.667 0.00 0.00 0.00 2.85
2385 2810 4.577246 CTCGCCTACGCCTGCCTC 62.577 72.222 0.00 0.00 39.84 4.70
2388 2813 4.577246 CTCCTCGCCTACGCCTGC 62.577 72.222 0.00 0.00 39.84 4.85
2389 2814 3.127352 GACTCCTCGCCTACGCCTG 62.127 68.421 0.00 0.00 39.84 4.85
2390 2815 2.829458 GACTCCTCGCCTACGCCT 60.829 66.667 0.00 0.00 39.84 5.52
2391 2816 3.902086 GGACTCCTCGCCTACGCC 61.902 72.222 0.00 0.00 39.84 5.68
2392 2817 3.902086 GGGACTCCTCGCCTACGC 61.902 72.222 0.00 0.00 39.84 4.42
2393 2818 3.584052 CGGGACTCCTCGCCTACG 61.584 72.222 0.00 0.00 42.01 3.51
2394 2819 2.124403 TCGGGACTCCTCGCCTAC 60.124 66.667 0.00 0.00 0.00 3.18
2395 2820 2.192443 CTCGGGACTCCTCGCCTA 59.808 66.667 0.00 0.00 0.00 3.93
2396 2821 4.824515 CCTCGGGACTCCTCGCCT 62.825 72.222 0.00 0.00 0.00 5.52
2399 2824 2.835431 ATGCCTCGGGACTCCTCG 60.835 66.667 0.00 0.00 0.00 4.63
2400 2825 1.743321 CTGATGCCTCGGGACTCCTC 61.743 65.000 0.00 0.00 0.00 3.71
2401 2826 1.760086 CTGATGCCTCGGGACTCCT 60.760 63.158 0.00 0.00 0.00 3.69
2402 2827 2.818132 CTGATGCCTCGGGACTCC 59.182 66.667 0.00 0.00 0.00 3.85
2408 2833 1.033746 ACATTTGCCTGATGCCTCGG 61.034 55.000 0.00 0.00 40.16 4.63
2409 2834 0.813184 AACATTTGCCTGATGCCTCG 59.187 50.000 0.00 0.00 40.16 4.63
2410 2835 2.417787 GGAAACATTTGCCTGATGCCTC 60.418 50.000 0.00 0.00 40.16 4.70
2411 2836 1.551883 GGAAACATTTGCCTGATGCCT 59.448 47.619 0.00 0.00 40.16 4.75
2412 2837 1.275856 TGGAAACATTTGCCTGATGCC 59.724 47.619 0.00 0.00 34.99 4.40
2413 2838 2.747396 TGGAAACATTTGCCTGATGC 57.253 45.000 0.00 0.00 36.21 3.91
2426 2851 3.438781 TCTTGTTGCACCGATATGGAAAC 59.561 43.478 0.00 0.00 42.00 2.78
2427 2852 3.438781 GTCTTGTTGCACCGATATGGAAA 59.561 43.478 0.00 0.00 42.00 3.13
2428 2853 3.006940 GTCTTGTTGCACCGATATGGAA 58.993 45.455 0.00 0.00 42.00 3.53
2429 2854 2.627945 GTCTTGTTGCACCGATATGGA 58.372 47.619 0.00 0.00 42.00 3.41
2430 2855 1.670811 GGTCTTGTTGCACCGATATGG 59.329 52.381 0.00 0.00 46.41 2.74
2431 2856 2.355197 TGGTCTTGTTGCACCGATATG 58.645 47.619 0.00 0.00 35.15 1.78
2432 2857 2.779755 TGGTCTTGTTGCACCGATAT 57.220 45.000 0.00 0.00 35.15 1.63
2433 2858 2.037902 TCTTGGTCTTGTTGCACCGATA 59.962 45.455 0.00 0.00 35.15 2.92
2434 2859 1.202758 TCTTGGTCTTGTTGCACCGAT 60.203 47.619 0.00 0.00 35.15 4.18
2435 2860 0.179234 TCTTGGTCTTGTTGCACCGA 59.821 50.000 0.00 0.00 35.15 4.69
2436 2861 0.307760 GTCTTGGTCTTGTTGCACCG 59.692 55.000 0.00 0.00 35.15 4.94
2437 2862 0.668535 GGTCTTGGTCTTGTTGCACC 59.331 55.000 0.00 0.00 0.00 5.01
2438 2863 1.334869 CTGGTCTTGGTCTTGTTGCAC 59.665 52.381 0.00 0.00 0.00 4.57
2439 2864 1.679139 CTGGTCTTGGTCTTGTTGCA 58.321 50.000 0.00 0.00 0.00 4.08
2440 2865 0.312102 GCTGGTCTTGGTCTTGTTGC 59.688 55.000 0.00 0.00 0.00 4.17
2441 2866 1.605710 CTGCTGGTCTTGGTCTTGTTG 59.394 52.381 0.00 0.00 0.00 3.33
2442 2867 1.477558 CCTGCTGGTCTTGGTCTTGTT 60.478 52.381 0.51 0.00 0.00 2.83
2443 2868 0.109342 CCTGCTGGTCTTGGTCTTGT 59.891 55.000 0.51 0.00 0.00 3.16
2444 2869 0.397941 TCCTGCTGGTCTTGGTCTTG 59.602 55.000 9.73 0.00 34.23 3.02
2445 2870 0.398318 GTCCTGCTGGTCTTGGTCTT 59.602 55.000 9.73 0.00 34.23 3.01
2446 2871 1.821061 CGTCCTGCTGGTCTTGGTCT 61.821 60.000 9.73 0.00 34.23 3.85
2447 2872 1.374758 CGTCCTGCTGGTCTTGGTC 60.375 63.158 9.73 0.00 34.23 4.02
2448 2873 2.743718 CGTCCTGCTGGTCTTGGT 59.256 61.111 9.73 0.00 34.23 3.67
2449 2874 2.046892 CCGTCCTGCTGGTCTTGG 60.047 66.667 9.73 3.98 34.23 3.61
2450 2875 2.743928 GCCGTCCTGCTGGTCTTG 60.744 66.667 9.73 0.00 34.23 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.