Multiple sequence alignment - TraesCS5D01G050800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G050800 chr5D 100.000 3009 0 0 1 3009 48835388 48838396 0.000000e+00 5557.0
1 TraesCS5D01G050800 chr5D 86.755 755 46 26 2298 3009 334950348 334949605 0.000000e+00 791.0
2 TraesCS5D01G050800 chr5D 90.459 566 27 11 2456 3009 416041122 416041672 0.000000e+00 721.0
3 TraesCS5D01G050800 chr5D 90.248 564 32 14 2458 3009 47021378 47020826 0.000000e+00 715.0
4 TraesCS5D01G050800 chr5D 88.489 417 31 5 269 670 416588317 416588731 3.490000e-134 488.0
5 TraesCS5D01G050800 chr5D 87.912 364 23 12 2297 2639 48842939 48843302 2.790000e-110 409.0
6 TraesCS5D01G050800 chr5D 83.252 412 44 13 266 673 302347035 302346645 3.690000e-94 355.0
7 TraesCS5D01G050800 chr5D 79.481 424 60 14 270 673 416588746 416588330 2.950000e-70 276.0
8 TraesCS5D01G050800 chr5D 87.791 172 17 4 504 673 302346850 302347019 6.580000e-47 198.0
9 TraesCS5D01G050800 chr5D 87.919 149 16 1 269 415 302346632 302346780 1.110000e-39 174.0
10 TraesCS5D01G050800 chr5D 84.768 151 19 3 270 418 117807287 117807139 6.720000e-32 148.0
11 TraesCS5D01G050800 chr5A 91.451 1626 99 21 694 2297 38538262 38539869 0.000000e+00 2196.0
12 TraesCS5D01G050800 chr5A 90.265 565 30 16 2458 3009 458287009 458287561 0.000000e+00 715.0
13 TraesCS5D01G050800 chr5B 91.374 1623 93 19 694 2297 51633587 51635181 0.000000e+00 2178.0
14 TraesCS5D01G050800 chr5B 87.204 422 35 8 269 673 527945433 527945014 2.110000e-126 462.0
15 TraesCS5D01G050800 chr6D 88.353 747 39 27 2298 3009 126417628 126418361 0.000000e+00 854.0
16 TraesCS5D01G050800 chr6D 87.785 745 44 24 2298 3009 46868658 46867928 0.000000e+00 828.0
17 TraesCS5D01G050800 chr6D 86.207 754 41 26 2298 3009 41250315 41249583 0.000000e+00 758.0
18 TraesCS5D01G050800 chr6D 84.259 756 63 27 2298 3009 295302458 295301715 0.000000e+00 686.0
19 TraesCS5D01G050800 chr6D 85.000 400 40 6 269 652 49462182 49461787 3.640000e-104 388.0
20 TraesCS5D01G050800 chr6D 86.704 361 21 14 2297 2633 126422795 126423152 2.830000e-100 375.0
21 TraesCS5D01G050800 chr6D 82.973 370 29 10 2297 2633 295297571 295297203 1.360000e-78 303.0
22 TraesCS5D01G050800 chr6D 82.880 368 22 11 2297 2633 41244964 41244607 2.930000e-75 292.0
23 TraesCS5D01G050800 chr2D 87.834 748 40 27 2298 3009 542734616 542733884 0.000000e+00 830.0
24 TraesCS5D01G050800 chr2D 86.490 755 49 20 2297 3009 114651394 114652137 0.000000e+00 780.0
25 TraesCS5D01G050800 chr2D 86.212 747 43 26 2298 3009 117220584 117221305 0.000000e+00 754.0
26 TraesCS5D01G050800 chr2D 90.459 566 32 10 2456 3009 531329121 531328566 0.000000e+00 726.0
27 TraesCS5D01G050800 chr2D 87.886 421 35 4 269 673 63704435 63704015 5.830000e-132 481.0
28 TraesCS5D01G050800 chr3D 87.684 747 41 30 2298 3009 11408811 11408081 0.000000e+00 822.0
29 TraesCS5D01G050800 chr3D 86.074 754 50 33 2295 3009 17849993 17849256 0.000000e+00 760.0
30 TraesCS5D01G050800 chr3D 85.407 418 41 6 271 673 382826407 382826819 1.670000e-112 416.0
31 TraesCS5D01G050800 chr3D 81.951 410 49 15 282 671 382779503 382779099 1.040000e-84 324.0
32 TraesCS5D01G050800 chr3D 78.169 426 59 24 270 673 382826831 382826418 1.080000e-59 241.0
33 TraesCS5D01G050800 chr1D 87.433 748 44 26 2297 3009 31050754 31050022 0.000000e+00 815.0
34 TraesCS5D01G050800 chr1D 85.810 747 57 29 2298 3009 491938629 491937897 0.000000e+00 747.0
35 TraesCS5D01G050800 chr1D 90.619 565 32 9 2456 3009 480935014 480934460 0.000000e+00 730.0
36 TraesCS5D01G050800 chr1D 89.669 242 23 2 433 673 223434206 223434446 1.050000e-79 307.0
37 TraesCS5D01G050800 chr1D 83.152 368 21 13 2297 2633 491933275 491932918 6.310000e-77 298.0
38 TraesCS5D01G050800 chr1D 92.029 138 8 3 270 404 223434073 223434210 1.100000e-44 191.0
39 TraesCS5D01G050800 chr1D 89.262 149 12 3 270 415 223434458 223434311 1.840000e-42 183.0
40 TraesCS5D01G050800 chr1D 89.683 126 13 0 548 673 223434210 223434085 8.630000e-36 161.0
41 TraesCS5D01G050800 chr7D 91.343 566 27 13 2456 3009 379838004 379837449 0.000000e+00 754.0
42 TraesCS5D01G050800 chr7D 97.222 36 1 0 2424 2459 78119732 78119767 9.010000e-06 62.1
43 TraesCS5D01G050800 chr2A 89.437 568 34 13 2458 3009 39558123 39558680 0.000000e+00 693.0
44 TraesCS5D01G050800 chr7B 87.678 422 34 11 269 673 269796509 269796089 2.710000e-130 475.0
45 TraesCS5D01G050800 chr7B 86.298 416 38 7 270 670 715819514 715819925 4.610000e-118 435.0
46 TraesCS5D01G050800 chr7B 84.461 399 43 6 291 673 715770191 715770586 2.830000e-100 375.0
47 TraesCS5D01G050800 chr7B 80.516 426 55 21 270 673 269796077 269796496 4.870000e-78 302.0
48 TraesCS5D01G050800 chr1B 87.648 421 34 11 270 673 664069422 664069003 9.760000e-130 473.0
49 TraesCS5D01G050800 chr1B 81.265 427 50 20 270 673 664068991 664069410 4.840000e-83 318.0
50 TraesCS5D01G050800 chr1B 77.372 411 62 16 286 673 586297083 586296681 6.530000e-52 215.0
51 TraesCS5D01G050800 chr1B 97.727 44 1 0 271 314 369514029 369514072 3.220000e-10 76.8
52 TraesCS5D01G050800 chr2B 87.379 412 33 7 278 673 247393087 247392679 3.540000e-124 455.0
53 TraesCS5D01G050800 chr3A 87.282 401 31 9 289 673 204861759 204862155 9.900000e-120 440.0
54 TraesCS5D01G050800 chr3A 79.714 419 53 16 270 666 204862167 204861759 1.060000e-69 274.0
55 TraesCS5D01G050800 chr4D 86.364 374 25 14 2298 2648 401787489 401787119 4.710000e-103 385.0
56 TraesCS5D01G050800 chr4D 80.243 329 20 21 2339 2633 342086809 342087126 3.930000e-49 206.0
57 TraesCS5D01G050800 chr4D 92.308 65 5 0 1067 1131 323617961 323617897 3.190000e-15 93.5
58 TraesCS5D01G050800 chr4B 83.416 404 45 21 270 667 546736681 546736294 3.690000e-94 355.0
59 TraesCS5D01G050800 chr4B 92.188 64 5 0 1067 1130 404187955 404187892 1.150000e-14 91.6
60 TraesCS5D01G050800 chr4B 86.250 80 11 0 118 197 562362161 562362082 1.490000e-13 87.9
61 TraesCS5D01G050800 chr7A 88.235 85 6 4 116 197 419868431 419868514 6.860000e-17 99.0
62 TraesCS5D01G050800 chr1A 94.737 57 3 0 142 198 549411212 549411156 4.130000e-14 89.8
63 TraesCS5D01G050800 chr1A 88.060 67 8 0 131 197 533321268 533321334 2.490000e-11 80.5
64 TraesCS5D01G050800 chr6B 81.928 83 14 1 118 199 666777138 666777220 5.380000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G050800 chr5D 48835388 48838396 3008 False 5557 5557 100.000 1 3009 1 chr5D.!!$F1 3008
1 TraesCS5D01G050800 chr5D 334949605 334950348 743 True 791 791 86.755 2298 3009 1 chr5D.!!$R4 711
2 TraesCS5D01G050800 chr5D 416041122 416041672 550 False 721 721 90.459 2456 3009 1 chr5D.!!$F3 553
3 TraesCS5D01G050800 chr5D 47020826 47021378 552 True 715 715 90.248 2458 3009 1 chr5D.!!$R1 551
4 TraesCS5D01G050800 chr5A 38538262 38539869 1607 False 2196 2196 91.451 694 2297 1 chr5A.!!$F1 1603
5 TraesCS5D01G050800 chr5A 458287009 458287561 552 False 715 715 90.265 2458 3009 1 chr5A.!!$F2 551
6 TraesCS5D01G050800 chr5B 51633587 51635181 1594 False 2178 2178 91.374 694 2297 1 chr5B.!!$F1 1603
7 TraesCS5D01G050800 chr6D 126417628 126418361 733 False 854 854 88.353 2298 3009 1 chr6D.!!$F1 711
8 TraesCS5D01G050800 chr6D 46867928 46868658 730 True 828 828 87.785 2298 3009 1 chr6D.!!$R3 711
9 TraesCS5D01G050800 chr6D 41249583 41250315 732 True 758 758 86.207 2298 3009 1 chr6D.!!$R2 711
10 TraesCS5D01G050800 chr6D 295301715 295302458 743 True 686 686 84.259 2298 3009 1 chr6D.!!$R6 711
11 TraesCS5D01G050800 chr2D 542733884 542734616 732 True 830 830 87.834 2298 3009 1 chr2D.!!$R3 711
12 TraesCS5D01G050800 chr2D 114651394 114652137 743 False 780 780 86.490 2297 3009 1 chr2D.!!$F1 712
13 TraesCS5D01G050800 chr2D 117220584 117221305 721 False 754 754 86.212 2298 3009 1 chr2D.!!$F2 711
14 TraesCS5D01G050800 chr2D 531328566 531329121 555 True 726 726 90.459 2456 3009 1 chr2D.!!$R2 553
15 TraesCS5D01G050800 chr3D 11408081 11408811 730 True 822 822 87.684 2298 3009 1 chr3D.!!$R1 711
16 TraesCS5D01G050800 chr3D 17849256 17849993 737 True 760 760 86.074 2295 3009 1 chr3D.!!$R2 714
17 TraesCS5D01G050800 chr1D 31050022 31050754 732 True 815 815 87.433 2297 3009 1 chr1D.!!$R1 712
18 TraesCS5D01G050800 chr1D 491937897 491938629 732 True 747 747 85.810 2298 3009 1 chr1D.!!$R4 711
19 TraesCS5D01G050800 chr1D 480934460 480935014 554 True 730 730 90.619 2456 3009 1 chr1D.!!$R2 553
20 TraesCS5D01G050800 chr7D 379837449 379838004 555 True 754 754 91.343 2456 3009 1 chr7D.!!$R1 553
21 TraesCS5D01G050800 chr2A 39558123 39558680 557 False 693 693 89.437 2458 3009 1 chr2A.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.035739 AAACACGATGCCCCGTAGTT 59.964 50.0 0.13 5.44 41.29 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 2053 0.252974 TTCTTAGCCCTAGCCCCACA 60.253 55.0 0.0 0.0 41.25 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.499106 AGAAATCCCTGTTTGTTGGAAATT 57.501 33.333 0.00 0.00 0.00 1.82
25 26 6.899089 AGAAATCCCTGTTTGTTGGAAATTT 58.101 32.000 0.00 0.00 0.00 1.82
26 27 6.992123 AGAAATCCCTGTTTGTTGGAAATTTC 59.008 34.615 9.83 9.83 36.58 2.17
27 28 5.885449 ATCCCTGTTTGTTGGAAATTTCA 57.115 34.783 19.49 3.64 0.00 2.69
28 29 5.683876 TCCCTGTTTGTTGGAAATTTCAA 57.316 34.783 19.49 5.77 0.00 2.69
29 30 6.054860 TCCCTGTTTGTTGGAAATTTCAAA 57.945 33.333 19.49 12.14 0.00 2.69
30 31 5.877564 TCCCTGTTTGTTGGAAATTTCAAAC 59.122 36.000 25.52 25.52 45.26 2.93
97 98 4.342352 AAAAATCCTCACGCGAGAATTC 57.658 40.909 15.93 0.00 42.34 2.17
98 99 2.672961 AATCCTCACGCGAGAATTCA 57.327 45.000 15.93 0.00 42.34 2.57
99 100 2.215907 ATCCTCACGCGAGAATTCAG 57.784 50.000 15.93 0.00 42.34 3.02
100 101 0.458543 TCCTCACGCGAGAATTCAGC 60.459 55.000 15.93 11.62 42.34 4.26
101 102 0.459237 CCTCACGCGAGAATTCAGCT 60.459 55.000 15.93 7.74 42.34 4.24
102 103 1.354040 CTCACGCGAGAATTCAGCTT 58.646 50.000 15.93 10.54 42.34 3.74
103 104 1.060266 CTCACGCGAGAATTCAGCTTG 59.940 52.381 15.93 19.29 42.34 4.01
104 105 0.792640 CACGCGAGAATTCAGCTTGT 59.207 50.000 15.93 10.78 0.00 3.16
105 106 1.071605 ACGCGAGAATTCAGCTTGTC 58.928 50.000 15.93 2.96 0.00 3.18
106 107 0.371645 CGCGAGAATTCAGCTTGTCC 59.628 55.000 19.13 0.00 0.00 4.02
107 108 1.442769 GCGAGAATTCAGCTTGTCCA 58.557 50.000 15.77 0.00 0.00 4.02
108 109 2.012673 GCGAGAATTCAGCTTGTCCAT 58.987 47.619 15.77 0.00 0.00 3.41
109 110 2.421424 GCGAGAATTCAGCTTGTCCATT 59.579 45.455 15.77 0.00 0.00 3.16
110 111 3.730061 GCGAGAATTCAGCTTGTCCATTG 60.730 47.826 15.77 0.00 0.00 2.82
111 112 3.686241 CGAGAATTCAGCTTGTCCATTGA 59.314 43.478 8.44 0.00 0.00 2.57
112 113 4.436584 CGAGAATTCAGCTTGTCCATTGAC 60.437 45.833 8.44 0.00 42.12 3.18
122 123 3.610040 TGTCCATTGACACTCGCTTAT 57.390 42.857 0.00 0.00 46.40 1.73
123 124 4.729227 TGTCCATTGACACTCGCTTATA 57.271 40.909 0.00 0.00 46.40 0.98
124 125 5.079689 TGTCCATTGACACTCGCTTATAA 57.920 39.130 0.00 0.00 46.40 0.98
125 126 5.109210 TGTCCATTGACACTCGCTTATAAG 58.891 41.667 8.20 8.20 46.40 1.73
126 127 4.025647 GTCCATTGACACTCGCTTATAAGC 60.026 45.833 24.79 24.79 43.58 3.09
127 128 6.976627 GTCCATTGACACTCGCTTATAAGCC 61.977 48.000 27.57 15.07 43.85 4.35
135 136 2.618165 GCTTATAAGCCCGCCAGAC 58.382 57.895 24.34 0.00 46.20 3.51
136 137 0.885150 GCTTATAAGCCCGCCAGACC 60.885 60.000 24.34 0.00 46.20 3.85
137 138 0.759346 CTTATAAGCCCGCCAGACCT 59.241 55.000 0.00 0.00 0.00 3.85
138 139 1.968493 CTTATAAGCCCGCCAGACCTA 59.032 52.381 0.00 0.00 0.00 3.08
139 140 1.629043 TATAAGCCCGCCAGACCTAG 58.371 55.000 0.00 0.00 0.00 3.02
140 141 0.105658 ATAAGCCCGCCAGACCTAGA 60.106 55.000 0.00 0.00 0.00 2.43
141 142 0.105658 TAAGCCCGCCAGACCTAGAT 60.106 55.000 0.00 0.00 0.00 1.98
142 143 0.983378 AAGCCCGCCAGACCTAGATT 60.983 55.000 0.00 0.00 0.00 2.40
143 144 1.227674 GCCCGCCAGACCTAGATTG 60.228 63.158 0.00 0.00 0.00 2.67
144 145 1.972660 GCCCGCCAGACCTAGATTGT 61.973 60.000 0.00 0.00 0.00 2.71
145 146 1.410004 CCCGCCAGACCTAGATTGTA 58.590 55.000 0.00 0.00 0.00 2.41
146 147 1.971357 CCCGCCAGACCTAGATTGTAT 59.029 52.381 0.00 0.00 0.00 2.29
147 148 2.368875 CCCGCCAGACCTAGATTGTATT 59.631 50.000 0.00 0.00 0.00 1.89
148 149 3.555168 CCCGCCAGACCTAGATTGTATTC 60.555 52.174 0.00 0.00 0.00 1.75
149 150 3.555168 CCGCCAGACCTAGATTGTATTCC 60.555 52.174 0.00 0.00 0.00 3.01
150 151 3.322254 CGCCAGACCTAGATTGTATTCCT 59.678 47.826 0.00 0.00 0.00 3.36
151 152 4.523173 CGCCAGACCTAGATTGTATTCCTA 59.477 45.833 0.00 0.00 0.00 2.94
152 153 5.186021 CGCCAGACCTAGATTGTATTCCTAT 59.814 44.000 0.00 0.00 0.00 2.57
153 154 6.402222 GCCAGACCTAGATTGTATTCCTATG 58.598 44.000 0.00 0.00 0.00 2.23
154 155 6.211584 GCCAGACCTAGATTGTATTCCTATGA 59.788 42.308 0.00 0.00 0.00 2.15
155 156 7.256332 GCCAGACCTAGATTGTATTCCTATGAA 60.256 40.741 0.00 0.00 34.33 2.57
156 157 8.091449 CCAGACCTAGATTGTATTCCTATGAAC 58.909 40.741 0.00 0.00 32.13 3.18
157 158 8.642432 CAGACCTAGATTGTATTCCTATGAACA 58.358 37.037 0.00 0.00 32.13 3.18
158 159 9.386122 AGACCTAGATTGTATTCCTATGAACAT 57.614 33.333 0.00 0.00 32.13 2.71
189 190 7.801716 TCAATAAAGCAAGTGTGTTTAGACT 57.198 32.000 0.00 0.00 30.59 3.24
190 191 7.861630 TCAATAAAGCAAGTGTGTTTAGACTC 58.138 34.615 0.00 0.00 28.86 3.36
191 192 7.497579 TCAATAAAGCAAGTGTGTTTAGACTCA 59.502 33.333 0.00 0.00 28.86 3.41
192 193 7.801716 ATAAAGCAAGTGTGTTTAGACTCAA 57.198 32.000 0.00 0.00 31.71 3.02
193 194 6.509418 AAAGCAAGTGTGTTTAGACTCAAA 57.491 33.333 0.00 0.00 31.71 2.69
194 195 6.509418 AAGCAAGTGTGTTTAGACTCAAAA 57.491 33.333 0.00 0.00 31.71 2.44
195 196 6.509418 AGCAAGTGTGTTTAGACTCAAAAA 57.491 33.333 0.00 0.00 31.71 1.94
214 215 4.584327 AAAATAAACTTCAGGCGTTGCT 57.416 36.364 0.00 0.00 0.00 3.91
215 216 4.584327 AAATAAACTTCAGGCGTTGCTT 57.416 36.364 0.00 0.00 0.00 3.91
216 217 3.831715 ATAAACTTCAGGCGTTGCTTC 57.168 42.857 0.00 0.00 0.00 3.86
217 218 1.388547 AAACTTCAGGCGTTGCTTCA 58.611 45.000 0.00 0.00 0.00 3.02
218 219 0.663153 AACTTCAGGCGTTGCTTCAC 59.337 50.000 0.00 0.00 0.00 3.18
219 220 1.166531 ACTTCAGGCGTTGCTTCACC 61.167 55.000 0.00 0.00 0.00 4.02
220 221 2.175184 CTTCAGGCGTTGCTTCACCG 62.175 60.000 0.00 0.00 0.00 4.94
221 222 3.726517 CAGGCGTTGCTTCACCGG 61.727 66.667 0.00 0.00 0.00 5.28
222 223 4.250305 AGGCGTTGCTTCACCGGT 62.250 61.111 0.00 0.00 0.00 5.28
223 224 3.723348 GGCGTTGCTTCACCGGTC 61.723 66.667 2.59 0.00 0.00 4.79
224 225 2.970324 GCGTTGCTTCACCGGTCA 60.970 61.111 2.59 0.00 0.00 4.02
225 226 2.954753 GCGTTGCTTCACCGGTCAG 61.955 63.158 2.59 4.77 0.00 3.51
226 227 1.300620 CGTTGCTTCACCGGTCAGA 60.301 57.895 2.59 0.00 0.00 3.27
227 228 1.557443 CGTTGCTTCACCGGTCAGAC 61.557 60.000 2.59 1.03 0.00 3.51
228 229 1.300620 TTGCTTCACCGGTCAGACG 60.301 57.895 2.59 0.00 0.00 4.18
229 230 3.112709 GCTTCACCGGTCAGACGC 61.113 66.667 2.59 5.79 0.00 5.19
230 231 2.432628 CTTCACCGGTCAGACGCC 60.433 66.667 2.59 0.00 0.00 5.68
231 232 3.220999 CTTCACCGGTCAGACGCCA 62.221 63.158 2.59 0.00 0.00 5.69
232 233 2.709125 CTTCACCGGTCAGACGCCAA 62.709 60.000 2.59 0.00 0.00 4.52
233 234 2.280524 CACCGGTCAGACGCCAAA 60.281 61.111 2.59 0.00 0.00 3.28
234 235 2.280592 ACCGGTCAGACGCCAAAC 60.281 61.111 0.00 0.00 0.00 2.93
235 236 2.280524 CCGGTCAGACGCCAAACA 60.281 61.111 0.00 0.00 0.00 2.83
236 237 2.604174 CCGGTCAGACGCCAAACAC 61.604 63.158 0.00 0.00 0.00 3.32
237 238 2.935955 GGTCAGACGCCAAACACG 59.064 61.111 0.00 0.00 0.00 4.49
238 239 1.593209 GGTCAGACGCCAAACACGA 60.593 57.895 0.00 0.00 0.00 4.35
239 240 0.949105 GGTCAGACGCCAAACACGAT 60.949 55.000 0.00 0.00 0.00 3.73
240 241 0.163788 GTCAGACGCCAAACACGATG 59.836 55.000 0.00 0.00 0.00 3.84
241 242 1.154413 CAGACGCCAAACACGATGC 60.154 57.895 0.00 0.00 0.00 3.91
242 243 2.175811 GACGCCAAACACGATGCC 59.824 61.111 0.00 0.00 0.00 4.40
243 244 3.322706 GACGCCAAACACGATGCCC 62.323 63.158 0.00 0.00 0.00 5.36
244 245 4.114997 CGCCAAACACGATGCCCC 62.115 66.667 0.00 0.00 0.00 5.80
245 246 4.114997 GCCAAACACGATGCCCCG 62.115 66.667 0.00 0.00 0.00 5.73
246 247 2.671619 CCAAACACGATGCCCCGT 60.672 61.111 0.00 0.00 44.43 5.28
247 248 1.376166 CCAAACACGATGCCCCGTA 60.376 57.895 0.13 0.00 41.29 4.02
248 249 1.366111 CCAAACACGATGCCCCGTAG 61.366 60.000 0.13 0.00 41.29 3.51
249 250 0.672401 CAAACACGATGCCCCGTAGT 60.672 55.000 0.13 0.14 41.29 2.73
250 251 0.035739 AAACACGATGCCCCGTAGTT 59.964 50.000 0.13 5.44 41.29 2.24
251 252 0.390735 AACACGATGCCCCGTAGTTC 60.391 55.000 0.13 0.00 41.29 3.01
252 253 1.876714 CACGATGCCCCGTAGTTCG 60.877 63.158 0.13 0.00 41.29 3.95
253 254 2.960129 CGATGCCCCGTAGTTCGC 60.960 66.667 0.00 0.00 38.35 4.70
254 255 2.588034 GATGCCCCGTAGTTCGCC 60.588 66.667 0.00 0.00 38.35 5.54
255 256 3.379865 GATGCCCCGTAGTTCGCCA 62.380 63.158 0.00 0.00 38.35 5.69
256 257 3.675619 ATGCCCCGTAGTTCGCCAC 62.676 63.158 0.00 0.00 38.35 5.01
257 258 4.382320 GCCCCGTAGTTCGCCACA 62.382 66.667 0.00 0.00 38.35 4.17
258 259 2.125673 CCCCGTAGTTCGCCACAG 60.126 66.667 0.00 0.00 38.35 3.66
259 260 2.642254 CCCCGTAGTTCGCCACAGA 61.642 63.158 0.00 0.00 38.35 3.41
260 261 1.290955 CCCGTAGTTCGCCACAGAA 59.709 57.895 0.00 0.00 38.35 3.02
261 262 0.320073 CCCGTAGTTCGCCACAGAAA 60.320 55.000 0.00 0.00 38.35 2.52
262 263 1.504359 CCGTAGTTCGCCACAGAAAA 58.496 50.000 0.00 0.00 38.35 2.29
263 264 1.868498 CCGTAGTTCGCCACAGAAAAA 59.132 47.619 0.00 0.00 38.35 1.94
264 265 2.096417 CCGTAGTTCGCCACAGAAAAAG 60.096 50.000 0.00 0.00 38.35 2.27
265 266 2.798283 CGTAGTTCGCCACAGAAAAAGA 59.202 45.455 0.00 0.00 0.00 2.52
266 267 3.246699 CGTAGTTCGCCACAGAAAAAGAA 59.753 43.478 0.00 0.00 0.00 2.52
267 268 3.971032 AGTTCGCCACAGAAAAAGAAG 57.029 42.857 0.00 0.00 0.00 2.85
268 269 2.618709 AGTTCGCCACAGAAAAAGAAGG 59.381 45.455 0.00 0.00 0.00 3.46
269 270 1.604604 TCGCCACAGAAAAAGAAGGG 58.395 50.000 0.00 0.00 0.00 3.95
270 271 0.598065 CGCCACAGAAAAAGAAGGGG 59.402 55.000 0.00 0.00 0.00 4.79
271 272 0.969149 GCCACAGAAAAAGAAGGGGG 59.031 55.000 0.00 0.00 0.00 5.40
272 273 1.480498 GCCACAGAAAAAGAAGGGGGA 60.480 52.381 0.00 0.00 0.00 4.81
273 274 2.519013 CCACAGAAAAAGAAGGGGGAG 58.481 52.381 0.00 0.00 0.00 4.30
274 275 2.108250 CCACAGAAAAAGAAGGGGGAGA 59.892 50.000 0.00 0.00 0.00 3.71
275 276 3.436470 CCACAGAAAAAGAAGGGGGAGAA 60.436 47.826 0.00 0.00 0.00 2.87
276 277 4.411013 CACAGAAAAAGAAGGGGGAGAAT 58.589 43.478 0.00 0.00 0.00 2.40
277 278 5.516591 CCACAGAAAAAGAAGGGGGAGAATA 60.517 44.000 0.00 0.00 0.00 1.75
278 279 6.190587 CACAGAAAAAGAAGGGGGAGAATAT 58.809 40.000 0.00 0.00 0.00 1.28
279 280 6.319911 CACAGAAAAAGAAGGGGGAGAATATC 59.680 42.308 0.00 0.00 0.00 1.63
280 281 6.011628 ACAGAAAAAGAAGGGGGAGAATATCA 60.012 38.462 0.00 0.00 0.00 2.15
281 282 6.319911 CAGAAAAAGAAGGGGGAGAATATCAC 59.680 42.308 0.00 0.00 0.00 3.06
282 283 5.796502 AAAAGAAGGGGGAGAATATCACA 57.203 39.130 0.00 0.00 30.31 3.58
283 284 6.347061 AAAAGAAGGGGGAGAATATCACAT 57.653 37.500 0.00 0.00 30.31 3.21
284 285 4.989875 AGAAGGGGGAGAATATCACATG 57.010 45.455 0.00 0.00 30.31 3.21
285 286 4.570926 AGAAGGGGGAGAATATCACATGA 58.429 43.478 0.00 0.00 30.31 3.07
286 287 5.168679 AGAAGGGGGAGAATATCACATGAT 58.831 41.667 0.00 0.00 38.51 2.45
287 288 6.334296 AGAAGGGGGAGAATATCACATGATA 58.666 40.000 0.00 4.11 40.85 2.15
288 289 6.214412 AGAAGGGGGAGAATATCACATGATAC 59.786 42.308 0.00 0.00 39.57 2.24
289 290 4.785376 AGGGGGAGAATATCACATGATACC 59.215 45.833 0.00 1.52 39.57 2.73
290 291 4.536090 GGGGGAGAATATCACATGATACCA 59.464 45.833 0.00 0.00 39.57 3.25
291 292 5.014123 GGGGGAGAATATCACATGATACCAA 59.986 44.000 0.00 0.00 39.57 3.67
292 293 5.940470 GGGGAGAATATCACATGATACCAAC 59.060 44.000 0.00 0.00 39.57 3.77
293 294 6.465751 GGGGAGAATATCACATGATACCAACA 60.466 42.308 0.00 0.00 39.57 3.33
294 295 6.428159 GGGAGAATATCACATGATACCAACAC 59.572 42.308 0.00 0.00 39.57 3.32
295 296 7.220030 GGAGAATATCACATGATACCAACACT 58.780 38.462 0.00 0.00 39.57 3.55
296 297 7.716998 GGAGAATATCACATGATACCAACACTT 59.283 37.037 0.00 0.00 39.57 3.16
297 298 9.764363 GAGAATATCACATGATACCAACACTTA 57.236 33.333 0.00 0.00 39.57 2.24
302 303 7.728847 TCACATGATACCAACACTTATATGC 57.271 36.000 0.00 0.00 0.00 3.14
303 304 7.508687 TCACATGATACCAACACTTATATGCT 58.491 34.615 0.00 0.00 0.00 3.79
304 305 7.657354 TCACATGATACCAACACTTATATGCTC 59.343 37.037 0.00 0.00 0.00 4.26
305 306 6.936900 ACATGATACCAACACTTATATGCTCC 59.063 38.462 0.00 0.00 0.00 4.70
306 307 5.865085 TGATACCAACACTTATATGCTCCC 58.135 41.667 0.00 0.00 0.00 4.30
307 308 5.368230 TGATACCAACACTTATATGCTCCCA 59.632 40.000 0.00 0.00 0.00 4.37
308 309 4.796110 ACCAACACTTATATGCTCCCAT 57.204 40.909 0.00 0.00 35.44 4.00
309 310 4.464008 ACCAACACTTATATGCTCCCATG 58.536 43.478 0.00 0.00 32.85 3.66
310 311 4.165950 ACCAACACTTATATGCTCCCATGA 59.834 41.667 0.00 0.00 32.85 3.07
311 312 5.163055 ACCAACACTTATATGCTCCCATGAT 60.163 40.000 0.00 0.00 32.85 2.45
312 313 6.044287 ACCAACACTTATATGCTCCCATGATA 59.956 38.462 0.00 0.00 32.85 2.15
313 314 7.114754 CCAACACTTATATGCTCCCATGATAT 58.885 38.462 0.00 0.00 32.85 1.63
314 315 7.281774 CCAACACTTATATGCTCCCATGATATC 59.718 40.741 0.00 0.00 32.85 1.63
315 316 7.500629 ACACTTATATGCTCCCATGATATCA 57.499 36.000 8.10 8.10 32.85 2.15
316 317 7.921304 ACACTTATATGCTCCCATGATATCAA 58.079 34.615 9.99 0.00 32.85 2.57
317 318 8.554870 ACACTTATATGCTCCCATGATATCAAT 58.445 33.333 9.99 0.00 32.85 2.57
318 319 9.404848 CACTTATATGCTCCCATGATATCAATT 57.595 33.333 9.99 0.00 32.85 2.32
319 320 9.624373 ACTTATATGCTCCCATGATATCAATTC 57.376 33.333 9.99 0.00 32.85 2.17
320 321 9.623000 CTTATATGCTCCCATGATATCAATTCA 57.377 33.333 9.99 3.13 32.85 2.57
321 322 9.978336 TTATATGCTCCCATGATATCAATTCAA 57.022 29.630 9.99 0.00 32.85 2.69
322 323 8.888836 ATATGCTCCCATGATATCAATTCAAA 57.111 30.769 9.99 0.00 32.85 2.69
323 324 7.606135 ATGCTCCCATGATATCAATTCAAAA 57.394 32.000 9.99 0.00 0.00 2.44
324 325 7.421087 TGCTCCCATGATATCAATTCAAAAA 57.579 32.000 9.99 0.00 0.00 1.94
325 326 8.025270 TGCTCCCATGATATCAATTCAAAAAT 57.975 30.769 9.99 0.00 0.00 1.82
326 327 8.487848 TGCTCCCATGATATCAATTCAAAAATT 58.512 29.630 9.99 0.00 35.43 1.82
327 328 8.985805 GCTCCCATGATATCAATTCAAAAATTC 58.014 33.333 9.99 0.00 32.69 2.17
380 381 8.697846 AAAATCATGCTTGTTCTCAACATATG 57.302 30.769 0.00 0.00 41.79 1.78
381 382 7.400599 AATCATGCTTGTTCTCAACATATGT 57.599 32.000 1.41 1.41 41.79 2.29
382 383 6.185852 TCATGCTTGTTCTCAACATATGTG 57.814 37.500 9.63 4.13 41.79 3.21
383 384 5.706833 TCATGCTTGTTCTCAACATATGTGT 59.293 36.000 9.63 0.00 41.79 3.72
385 386 6.389830 TGCTTGTTCTCAACATATGTGTTT 57.610 33.333 9.63 0.00 46.07 2.83
386 387 7.503521 TGCTTGTTCTCAACATATGTGTTTA 57.496 32.000 9.63 0.00 46.07 2.01
387 388 7.359595 TGCTTGTTCTCAACATATGTGTTTAC 58.640 34.615 9.63 5.43 46.07 2.01
388 389 7.012799 TGCTTGTTCTCAACATATGTGTTTACA 59.987 33.333 9.63 7.87 46.07 2.41
389 390 7.860373 GCTTGTTCTCAACATATGTGTTTACAA 59.140 33.333 9.63 14.16 46.07 2.41
390 391 9.385902 CTTGTTCTCAACATATGTGTTTACAAG 57.614 33.333 22.59 22.59 46.07 3.16
391 392 7.359595 TGTTCTCAACATATGTGTTTACAAGC 58.640 34.615 9.63 0.00 46.07 4.01
392 393 6.494893 TCTCAACATATGTGTTTACAAGCC 57.505 37.500 9.63 0.00 46.07 4.35
393 394 5.414454 TCTCAACATATGTGTTTACAAGCCC 59.586 40.000 9.63 0.00 46.07 5.19
394 395 5.321102 TCAACATATGTGTTTACAAGCCCT 58.679 37.500 9.63 0.00 46.07 5.19
395 396 6.477253 TCAACATATGTGTTTACAAGCCCTA 58.523 36.000 9.63 0.00 46.07 3.53
396 397 6.373216 TCAACATATGTGTTTACAAGCCCTAC 59.627 38.462 9.63 0.00 46.07 3.18
397 398 5.811190 ACATATGTGTTTACAAGCCCTACA 58.189 37.500 7.78 0.00 40.84 2.74
398 399 6.242396 ACATATGTGTTTACAAGCCCTACAA 58.758 36.000 7.78 0.00 40.84 2.41
399 400 6.717540 ACATATGTGTTTACAAGCCCTACAAA 59.282 34.615 7.78 0.00 40.84 2.83
400 401 7.231722 ACATATGTGTTTACAAGCCCTACAAAA 59.768 33.333 7.78 0.00 40.84 2.44
401 402 5.916661 TGTGTTTACAAGCCCTACAAAAA 57.083 34.783 0.00 0.00 32.88 1.94
402 403 6.472686 TGTGTTTACAAGCCCTACAAAAAT 57.527 33.333 0.00 0.00 32.88 1.82
403 404 6.508777 TGTGTTTACAAGCCCTACAAAAATC 58.491 36.000 0.00 0.00 32.88 2.17
404 405 6.096987 TGTGTTTACAAGCCCTACAAAAATCA 59.903 34.615 0.00 0.00 32.88 2.57
405 406 6.640907 GTGTTTACAAGCCCTACAAAAATCAG 59.359 38.462 0.00 0.00 0.00 2.90
406 407 6.547880 TGTTTACAAGCCCTACAAAAATCAGA 59.452 34.615 0.00 0.00 0.00 3.27
407 408 7.232534 TGTTTACAAGCCCTACAAAAATCAGAT 59.767 33.333 0.00 0.00 0.00 2.90
408 409 5.904362 ACAAGCCCTACAAAAATCAGATC 57.096 39.130 0.00 0.00 0.00 2.75
409 410 4.706962 ACAAGCCCTACAAAAATCAGATCC 59.293 41.667 0.00 0.00 0.00 3.36
410 411 4.591321 AGCCCTACAAAAATCAGATCCA 57.409 40.909 0.00 0.00 0.00 3.41
411 412 4.934356 AGCCCTACAAAAATCAGATCCAA 58.066 39.130 0.00 0.00 0.00 3.53
412 413 5.332743 AGCCCTACAAAAATCAGATCCAAA 58.667 37.500 0.00 0.00 0.00 3.28
413 414 5.960202 AGCCCTACAAAAATCAGATCCAAAT 59.040 36.000 0.00 0.00 0.00 2.32
414 415 6.441604 AGCCCTACAAAAATCAGATCCAAATT 59.558 34.615 0.00 0.00 0.00 1.82
415 416 7.038088 AGCCCTACAAAAATCAGATCCAAATTT 60.038 33.333 0.00 0.00 0.00 1.82
416 417 7.064966 GCCCTACAAAAATCAGATCCAAATTTG 59.935 37.037 11.40 11.40 33.68 2.32
417 418 8.313292 CCCTACAAAAATCAGATCCAAATTTGA 58.687 33.333 19.86 6.29 31.23 2.69
418 419 9.362539 CCTACAAAAATCAGATCCAAATTTGAG 57.637 33.333 19.86 9.70 30.28 3.02
421 422 9.835389 ACAAAAATCAGATCCAAATTTGAGAAA 57.165 25.926 19.86 2.69 30.28 2.52
423 424 9.835389 AAAAATCAGATCCAAATTTGAGAAACA 57.165 25.926 19.86 0.00 30.28 2.83
424 425 9.835389 AAAATCAGATCCAAATTTGAGAAACAA 57.165 25.926 19.86 0.21 30.28 2.83
536 537 8.489990 TTTTTCTTTCTCATTGCACAATTTGA 57.510 26.923 2.79 0.00 0.00 2.69
537 538 8.489990 TTTTCTTTCTCATTGCACAATTTGAA 57.510 26.923 2.79 0.00 0.00 2.69
538 539 8.665643 TTTCTTTCTCATTGCACAATTTGAAT 57.334 26.923 2.79 0.00 0.00 2.57
539 540 8.665643 TTCTTTCTCATTGCACAATTTGAATT 57.334 26.923 2.79 0.00 0.00 2.17
540 541 8.665643 TCTTTCTCATTGCACAATTTGAATTT 57.334 26.923 2.79 0.00 0.00 1.82
541 542 8.552865 TCTTTCTCATTGCACAATTTGAATTTG 58.447 29.630 2.79 0.00 0.00 2.32
542 543 6.788684 TCTCATTGCACAATTTGAATTTGG 57.211 33.333 2.79 0.00 0.00 3.28
543 544 6.522946 TCTCATTGCACAATTTGAATTTGGA 58.477 32.000 2.79 0.00 0.00 3.53
544 545 7.162761 TCTCATTGCACAATTTGAATTTGGAT 58.837 30.769 2.79 0.00 0.00 3.41
545 546 7.332430 TCTCATTGCACAATTTGAATTTGGATC 59.668 33.333 2.79 0.00 0.00 3.36
546 547 7.162761 TCATTGCACAATTTGAATTTGGATCT 58.837 30.769 2.79 0.00 0.00 2.75
547 548 6.788684 TTGCACAATTTGAATTTGGATCTG 57.211 33.333 2.79 0.00 0.00 2.90
548 549 6.099159 TGCACAATTTGAATTTGGATCTGA 57.901 33.333 2.79 0.00 0.00 3.27
549 550 6.703319 TGCACAATTTGAATTTGGATCTGAT 58.297 32.000 2.79 0.00 0.00 2.90
550 551 7.162761 TGCACAATTTGAATTTGGATCTGATT 58.837 30.769 2.79 0.00 0.00 2.57
551 552 7.662258 TGCACAATTTGAATTTGGATCTGATTT 59.338 29.630 2.79 0.00 0.00 2.17
552 553 8.508875 GCACAATTTGAATTTGGATCTGATTTT 58.491 29.630 2.79 0.00 0.00 1.82
576 577 8.630054 TTTTTAAGGCTTGTAGACACATATGT 57.370 30.769 10.69 1.41 43.71 2.29
577 578 8.630054 TTTTAAGGCTTGTAGACACATATGTT 57.370 30.769 10.69 0.00 39.95 2.71
578 579 7.609760 TTAAGGCTTGTAGACACATATGTTG 57.390 36.000 10.69 4.77 39.95 3.33
579 580 5.420725 AGGCTTGTAGACACATATGTTGA 57.579 39.130 5.37 0.00 39.95 3.18
580 581 5.423015 AGGCTTGTAGACACATATGTTGAG 58.577 41.667 5.37 0.00 39.95 3.02
581 582 5.187772 AGGCTTGTAGACACATATGTTGAGA 59.812 40.000 5.37 0.00 39.95 3.27
582 583 5.874810 GGCTTGTAGACACATATGTTGAGAA 59.125 40.000 5.37 0.00 39.95 2.87
583 584 6.183360 GGCTTGTAGACACATATGTTGAGAAC 60.183 42.308 5.37 2.24 39.95 3.01
584 585 6.368791 GCTTGTAGACACATATGTTGAGAACA 59.631 38.462 5.37 4.83 39.95 3.18
652 653 9.659135 AATATTTTGAATTGGTATCATGGGAGA 57.341 29.630 0.00 0.00 0.00 3.71
653 654 7.976414 ATTTTGAATTGGTATCATGGGAGAA 57.024 32.000 0.00 0.00 0.00 2.87
654 655 7.976414 TTTTGAATTGGTATCATGGGAGAAT 57.024 32.000 0.00 0.00 0.00 2.40
655 656 6.964807 TTGAATTGGTATCATGGGAGAATG 57.035 37.500 0.00 0.00 0.00 2.67
656 657 6.017211 TGAATTGGTATCATGGGAGAATGT 57.983 37.500 0.00 0.00 0.00 2.71
657 658 7.147958 TGAATTGGTATCATGGGAGAATGTA 57.852 36.000 0.00 0.00 0.00 2.29
658 659 7.581814 TGAATTGGTATCATGGGAGAATGTAA 58.418 34.615 0.00 0.00 0.00 2.41
659 660 7.720957 TGAATTGGTATCATGGGAGAATGTAAG 59.279 37.037 0.00 0.00 0.00 2.34
660 661 6.575244 TTGGTATCATGGGAGAATGTAAGT 57.425 37.500 0.00 0.00 0.00 2.24
661 662 5.928976 TGGTATCATGGGAGAATGTAAGTG 58.071 41.667 0.00 0.00 0.00 3.16
662 663 5.428457 TGGTATCATGGGAGAATGTAAGTGT 59.572 40.000 0.00 0.00 0.00 3.55
663 664 6.069673 TGGTATCATGGGAGAATGTAAGTGTT 60.070 38.462 0.00 0.00 0.00 3.32
664 665 6.260936 GGTATCATGGGAGAATGTAAGTGTTG 59.739 42.308 0.00 0.00 0.00 3.33
665 666 4.588899 TCATGGGAGAATGTAAGTGTTGG 58.411 43.478 0.00 0.00 0.00 3.77
666 667 4.042809 TCATGGGAGAATGTAAGTGTTGGT 59.957 41.667 0.00 0.00 0.00 3.67
667 668 5.249622 TCATGGGAGAATGTAAGTGTTGGTA 59.750 40.000 0.00 0.00 0.00 3.25
668 669 5.772393 TGGGAGAATGTAAGTGTTGGTAT 57.228 39.130 0.00 0.00 0.00 2.73
669 670 5.741011 TGGGAGAATGTAAGTGTTGGTATC 58.259 41.667 0.00 0.00 0.00 2.24
670 671 5.249622 TGGGAGAATGTAAGTGTTGGTATCA 59.750 40.000 0.00 0.00 0.00 2.15
671 672 6.069673 TGGGAGAATGTAAGTGTTGGTATCAT 60.070 38.462 0.00 0.00 0.00 2.45
672 673 6.260936 GGGAGAATGTAAGTGTTGGTATCATG 59.739 42.308 0.00 0.00 0.00 3.07
673 674 6.238484 GGAGAATGTAAGTGTTGGTATCATGC 60.238 42.308 0.00 0.00 0.00 4.06
674 675 5.590259 AGAATGTAAGTGTTGGTATCATGCC 59.410 40.000 0.00 0.00 0.00 4.40
675 676 3.616219 TGTAAGTGTTGGTATCATGCCC 58.384 45.455 0.00 0.00 0.00 5.36
676 677 2.897271 AAGTGTTGGTATCATGCCCA 57.103 45.000 0.00 0.00 0.00 5.36
677 678 2.897271 AGTGTTGGTATCATGCCCAA 57.103 45.000 7.09 7.09 38.38 4.12
678 679 2.726821 AGTGTTGGTATCATGCCCAAG 58.273 47.619 10.45 0.00 41.23 3.61
679 680 2.308570 AGTGTTGGTATCATGCCCAAGA 59.691 45.455 10.45 7.65 41.23 3.02
680 681 3.088532 GTGTTGGTATCATGCCCAAGAA 58.911 45.455 10.45 2.29 41.23 2.52
681 682 3.129287 GTGTTGGTATCATGCCCAAGAAG 59.871 47.826 10.45 0.00 41.23 2.85
682 683 3.010027 TGTTGGTATCATGCCCAAGAAGA 59.990 43.478 10.45 0.00 41.23 2.87
683 684 4.016444 GTTGGTATCATGCCCAAGAAGAA 58.984 43.478 10.45 0.00 41.23 2.52
684 685 3.889815 TGGTATCATGCCCAAGAAGAAG 58.110 45.455 0.00 0.00 0.00 2.85
685 686 3.217626 GGTATCATGCCCAAGAAGAAGG 58.782 50.000 0.00 0.00 0.00 3.46
686 687 3.372025 GGTATCATGCCCAAGAAGAAGGT 60.372 47.826 0.00 0.00 0.00 3.50
687 688 2.496899 TCATGCCCAAGAAGAAGGTC 57.503 50.000 0.00 0.00 0.00 3.85
688 689 1.988107 TCATGCCCAAGAAGAAGGTCT 59.012 47.619 0.00 0.00 0.00 3.85
689 690 2.376518 TCATGCCCAAGAAGAAGGTCTT 59.623 45.455 0.00 0.00 39.87 3.01
704 705 1.104630 GTCTTCTAGTGACCCCCTCG 58.895 60.000 7.19 0.00 0.00 4.63
705 706 0.683504 TCTTCTAGTGACCCCCTCGC 60.684 60.000 0.00 0.00 0.00 5.03
722 723 2.742372 CCTCGGCCCAACGTTCTG 60.742 66.667 0.00 0.00 34.94 3.02
933 934 2.031069 GGCACTTCTCTATCGTATCGCA 60.031 50.000 0.00 0.00 0.00 5.10
934 935 3.230355 GCACTTCTCTATCGTATCGCAG 58.770 50.000 0.00 0.00 0.00 5.18
935 936 3.058846 GCACTTCTCTATCGTATCGCAGA 60.059 47.826 0.00 0.00 45.75 4.26
936 937 4.459606 CACTTCTCTATCGTATCGCAGAC 58.540 47.826 0.00 0.00 42.51 3.51
937 938 4.212425 CACTTCTCTATCGTATCGCAGACT 59.788 45.833 0.00 0.00 42.51 3.24
938 939 4.449743 ACTTCTCTATCGTATCGCAGACTC 59.550 45.833 0.00 0.00 42.51 3.36
939 940 2.987821 TCTCTATCGTATCGCAGACTCG 59.012 50.000 0.00 0.00 42.51 4.18
940 941 2.732500 CTCTATCGTATCGCAGACTCGT 59.267 50.000 0.00 0.00 42.51 4.18
948 949 0.321387 TCGCAGACTCGTAGTCCAGT 60.321 55.000 10.24 0.00 46.18 4.00
956 957 2.274437 CTCGTAGTCCAGTACGCAGTA 58.726 52.381 8.79 0.00 44.45 2.74
979 985 2.097680 AGCAAGCAAGAGAAGAGAGC 57.902 50.000 0.00 0.00 0.00 4.09
989 995 2.025416 AGAGAAGAGAGCAGACCAGCTA 60.025 50.000 0.00 0.00 46.75 3.32
992 998 0.322997 AGAGAGCAGACCAGCTACGT 60.323 55.000 0.00 0.00 46.75 3.57
1182 1190 2.876091 CATGCTCTGCTCCATTGTTTG 58.124 47.619 0.00 0.00 0.00 2.93
1183 1191 0.599558 TGCTCTGCTCCATTGTTTGC 59.400 50.000 0.00 0.00 0.00 3.68
1184 1192 0.455633 GCTCTGCTCCATTGTTTGCG 60.456 55.000 0.00 0.00 0.00 4.85
1185 1193 1.159285 CTCTGCTCCATTGTTTGCGA 58.841 50.000 0.00 0.00 0.00 5.10
1186 1194 1.536766 CTCTGCTCCATTGTTTGCGAA 59.463 47.619 0.00 0.00 0.00 4.70
1187 1195 2.161855 TCTGCTCCATTGTTTGCGAAT 58.838 42.857 0.00 0.00 0.00 3.34
1188 1196 2.095110 TCTGCTCCATTGTTTGCGAATG 60.095 45.455 0.00 0.00 0.00 2.67
1189 1197 1.885233 TGCTCCATTGTTTGCGAATGA 59.115 42.857 0.00 0.00 33.36 2.57
1190 1198 2.095110 TGCTCCATTGTTTGCGAATGAG 60.095 45.455 0.00 0.00 33.36 2.90
1191 1199 2.523015 CTCCATTGTTTGCGAATGAGC 58.477 47.619 0.00 0.00 33.36 4.26
1192 1200 2.161855 TCCATTGTTTGCGAATGAGCT 58.838 42.857 0.00 0.00 38.13 4.09
1194 1202 2.523015 CATTGTTTGCGAATGAGCTCC 58.477 47.619 12.15 0.00 38.13 4.70
1195 1203 0.516877 TTGTTTGCGAATGAGCTCCG 59.483 50.000 12.15 8.94 38.13 4.63
1200 1208 0.602638 TGCGAATGAGCTCCGTGTTT 60.603 50.000 12.15 0.00 38.13 2.83
1203 1211 2.222819 GCGAATGAGCTCCGTGTTTTAG 60.223 50.000 12.15 0.00 0.00 1.85
1204 1212 2.993899 CGAATGAGCTCCGTGTTTTAGT 59.006 45.455 12.15 0.00 0.00 2.24
1205 1213 3.432252 CGAATGAGCTCCGTGTTTTAGTT 59.568 43.478 12.15 0.00 0.00 2.24
1206 1214 4.434330 CGAATGAGCTCCGTGTTTTAGTTC 60.434 45.833 12.15 0.02 0.00 3.01
1207 1215 3.462483 TGAGCTCCGTGTTTTAGTTCA 57.538 42.857 12.15 0.00 0.00 3.18
1208 1216 4.002906 TGAGCTCCGTGTTTTAGTTCAT 57.997 40.909 12.15 0.00 0.00 2.57
1385 1399 6.334202 GTGATACCTCTTTTCTGGACAGTAG 58.666 44.000 0.00 0.00 0.00 2.57
1401 1417 6.041637 TGGACAGTAGCTCTTTTCTCTGTTTA 59.958 38.462 0.00 0.00 36.49 2.01
1406 1422 5.659048 AGCTCTTTTCTCTGTTTACGTTG 57.341 39.130 0.00 0.00 0.00 4.10
1512 1528 7.062722 GCTTTTCAAGGCTCAAATTATCTGTTC 59.937 37.037 0.00 0.00 0.00 3.18
1590 1606 1.986210 GGCAAGCAAGGAGGCCATT 60.986 57.895 5.01 0.00 45.70 3.16
1700 1729 2.825836 GGATTGGCAGCCGGAGTG 60.826 66.667 5.05 1.86 0.00 3.51
1768 1797 2.372172 ACTGGGTTGGTTTCTCGATCTT 59.628 45.455 0.00 0.00 0.00 2.40
1770 1799 2.637872 TGGGTTGGTTTCTCGATCTTCT 59.362 45.455 0.00 0.00 0.00 2.85
1811 1840 5.633996 CTGTTTTAGATCAGCTAGCTTCG 57.366 43.478 16.46 4.92 0.00 3.79
1853 1888 5.883673 ACTAACTTGTGCTTGTTAACCTTGA 59.116 36.000 2.48 0.00 0.00 3.02
1873 1908 0.179037 TGCTGCTGCAGAAGAACAGT 60.179 50.000 32.30 0.00 45.31 3.55
1996 2031 4.819761 GCGGCGACCATGCTCTCA 62.820 66.667 12.98 0.00 34.52 3.27
2017 2052 1.523758 GCATATTCTAAGCCACGGGG 58.476 55.000 0.00 0.00 37.18 5.73
2018 2053 1.202770 GCATATTCTAAGCCACGGGGT 60.203 52.381 5.12 0.00 36.17 4.95
2061 2096 4.836125 TTGGAGCAACTCTTGAAATGTC 57.164 40.909 0.00 0.00 0.00 3.06
2149 2184 2.598394 TCCTGGCACCAAGCAAGC 60.598 61.111 0.00 0.00 43.40 4.01
2303 2339 4.471904 TGCTGGAGTAGTGTTTGATAGG 57.528 45.455 0.00 0.00 0.00 2.57
2317 2353 5.600898 TGTTTGATAGGTTCTATGGATCGGA 59.399 40.000 0.00 0.00 0.00 4.55
2330 2366 4.603094 TGGATCGGATAGGCTAGGATTA 57.397 45.455 0.00 0.00 0.00 1.75
2421 2473 1.443407 CCGGTGATGGCAGAGTAGG 59.557 63.158 0.00 0.00 0.00 3.18
2422 2474 1.227380 CGGTGATGGCAGAGTAGGC 60.227 63.158 0.00 0.00 0.00 3.93
2427 2479 4.874521 TGGCAGAGTAGGCAGAGT 57.125 55.556 0.00 0.00 39.34 3.24
2429 2481 1.769026 TGGCAGAGTAGGCAGAGTAG 58.231 55.000 0.00 0.00 39.34 2.57
2430 2482 1.036707 GGCAGAGTAGGCAGAGTAGG 58.963 60.000 0.00 0.00 0.00 3.18
2453 2506 4.680237 CGGTGCTTCCCGTCAGCA 62.680 66.667 2.44 0.00 45.21 4.41
2462 2540 0.038599 TCCCGTCAGCACTGTAGGTA 59.961 55.000 11.21 0.00 0.00 3.08
2547 2628 2.351276 GTGACAGGGGCCGTCAAT 59.649 61.111 14.71 0.00 44.58 2.57
2572 2653 2.044946 GGTTGAGCGCCCCTGATT 60.045 61.111 2.29 0.00 0.00 2.57
2726 2815 9.889128 TCAATACATAGAACATGTTTCAGATCA 57.111 29.630 13.36 0.00 33.76 2.92
2731 2820 9.671279 ACATAGAACATGTTTCAGATCAATACA 57.329 29.630 13.36 0.00 0.00 2.29
2738 2827 9.671279 ACATGTTTCAGATCAATACATAGAACA 57.329 29.630 0.00 0.00 0.00 3.18
2741 2830 9.671279 TGTTTCAGATCAATACATAGAACATGT 57.329 29.630 0.00 0.00 36.13 3.21
2781 2870 0.756903 ACAGCCACAACGTACCTCTT 59.243 50.000 0.00 0.00 0.00 2.85
2810 2899 7.546778 TTGAAACAAATTCTTTAACCTTGGC 57.453 32.000 0.00 0.00 38.92 4.52
2813 2902 4.231273 ACAAATTCTTTAACCTTGGCCCT 58.769 39.130 0.00 0.00 0.00 5.19
2831 2921 4.403113 GGCCCTTTTTATTGTCCGGAAATA 59.597 41.667 5.23 10.16 0.00 1.40
2867 2967 2.546778 TGACTGTGTGTTCTTCGAACC 58.453 47.619 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.610580 AATTTCCAACAAACAGGGATTTCTA 57.389 32.000 0.00 0.00 0.00 2.10
1 2 6.499106 AATTTCCAACAAACAGGGATTTCT 57.501 33.333 0.00 0.00 0.00 2.52
2 3 6.765512 TGAAATTTCCAACAAACAGGGATTTC 59.234 34.615 15.48 0.00 37.79 2.17
3 4 6.657875 TGAAATTTCCAACAAACAGGGATTT 58.342 32.000 15.48 0.00 0.00 2.17
4 5 6.245890 TGAAATTTCCAACAAACAGGGATT 57.754 33.333 15.48 0.00 0.00 3.01
5 6 5.885449 TGAAATTTCCAACAAACAGGGAT 57.115 34.783 15.48 0.00 0.00 3.85
6 7 5.683876 TTGAAATTTCCAACAAACAGGGA 57.316 34.783 15.48 0.00 0.00 4.20
7 8 6.117911 GTTTGAAATTTCCAACAAACAGGG 57.882 37.500 23.33 0.00 46.04 4.45
80 81 1.804372 GCTGAATTCTCGCGTGAGGAT 60.804 52.381 24.88 19.82 42.59 3.24
81 82 0.458543 GCTGAATTCTCGCGTGAGGA 60.459 55.000 24.88 18.26 42.79 3.71
82 83 0.459237 AGCTGAATTCTCGCGTGAGG 60.459 55.000 24.88 9.48 42.79 3.86
83 84 1.060266 CAAGCTGAATTCTCGCGTGAG 59.940 52.381 19.99 19.99 43.99 3.51
84 85 1.070821 CAAGCTGAATTCTCGCGTGA 58.929 50.000 21.77 6.33 34.86 4.35
85 86 0.792640 ACAAGCTGAATTCTCGCGTG 59.207 50.000 23.32 23.32 36.98 5.34
86 87 1.071605 GACAAGCTGAATTCTCGCGT 58.928 50.000 5.77 5.10 0.00 6.01
87 88 0.371645 GGACAAGCTGAATTCTCGCG 59.628 55.000 7.05 0.00 0.00 5.87
88 89 1.442769 TGGACAAGCTGAATTCTCGC 58.557 50.000 7.05 9.35 0.00 5.03
89 90 3.686241 TCAATGGACAAGCTGAATTCTCG 59.314 43.478 7.05 0.00 0.00 4.04
90 91 4.979388 GTCAATGGACAAGCTGAATTCTC 58.021 43.478 7.05 0.00 43.73 2.87
102 103 6.418760 GCTTATAAGCGAGTGTCAATGGACA 61.419 44.000 21.10 0.00 46.00 4.02
103 104 4.025647 GCTTATAAGCGAGTGTCAATGGAC 60.026 45.833 21.10 0.00 42.88 4.02
104 105 4.119862 GCTTATAAGCGAGTGTCAATGGA 58.880 43.478 21.10 0.00 42.88 3.41
105 106 4.458951 GCTTATAAGCGAGTGTCAATGG 57.541 45.455 21.10 0.00 42.88 3.16
118 119 0.759346 AGGTCTGGCGGGCTTATAAG 59.241 55.000 8.20 8.20 0.00 1.73
119 120 1.968493 CTAGGTCTGGCGGGCTTATAA 59.032 52.381 2.38 0.00 0.00 0.98
120 121 1.146359 TCTAGGTCTGGCGGGCTTATA 59.854 52.381 2.38 0.00 0.00 0.98
121 122 0.105658 TCTAGGTCTGGCGGGCTTAT 60.106 55.000 2.38 0.00 0.00 1.73
122 123 0.105658 ATCTAGGTCTGGCGGGCTTA 60.106 55.000 2.38 0.00 0.00 3.09
123 124 0.983378 AATCTAGGTCTGGCGGGCTT 60.983 55.000 2.38 0.00 0.00 4.35
124 125 1.383248 AATCTAGGTCTGGCGGGCT 60.383 57.895 2.38 0.00 0.00 5.19
125 126 1.227674 CAATCTAGGTCTGGCGGGC 60.228 63.158 0.00 0.00 0.00 6.13
126 127 1.410004 TACAATCTAGGTCTGGCGGG 58.590 55.000 0.00 0.00 0.00 6.13
127 128 3.555168 GGAATACAATCTAGGTCTGGCGG 60.555 52.174 0.00 0.00 0.00 6.13
128 129 3.322254 AGGAATACAATCTAGGTCTGGCG 59.678 47.826 0.00 0.00 0.00 5.69
129 130 4.965200 AGGAATACAATCTAGGTCTGGC 57.035 45.455 0.00 0.00 0.00 4.85
130 131 7.782897 TCATAGGAATACAATCTAGGTCTGG 57.217 40.000 0.00 0.00 0.00 3.86
131 132 8.642432 TGTTCATAGGAATACAATCTAGGTCTG 58.358 37.037 0.00 0.00 35.05 3.51
132 133 8.783660 TGTTCATAGGAATACAATCTAGGTCT 57.216 34.615 0.00 0.00 35.05 3.85
163 164 8.850156 AGTCTAAACACACTTGCTTTATTGAAT 58.150 29.630 0.00 0.00 0.00 2.57
164 165 8.220755 AGTCTAAACACACTTGCTTTATTGAA 57.779 30.769 0.00 0.00 0.00 2.69
165 166 7.497579 TGAGTCTAAACACACTTGCTTTATTGA 59.502 33.333 0.00 0.00 0.00 2.57
166 167 7.639039 TGAGTCTAAACACACTTGCTTTATTG 58.361 34.615 0.00 0.00 0.00 1.90
167 168 7.801716 TGAGTCTAAACACACTTGCTTTATT 57.198 32.000 0.00 0.00 0.00 1.40
168 169 7.801716 TTGAGTCTAAACACACTTGCTTTAT 57.198 32.000 0.00 0.00 0.00 1.40
169 170 7.618502 TTTGAGTCTAAACACACTTGCTTTA 57.381 32.000 0.00 0.00 0.00 1.85
170 171 6.509418 TTTGAGTCTAAACACACTTGCTTT 57.491 33.333 0.00 0.00 0.00 3.51
171 172 6.509418 TTTTGAGTCTAAACACACTTGCTT 57.491 33.333 0.00 0.00 0.00 3.91
172 173 6.509418 TTTTTGAGTCTAAACACACTTGCT 57.491 33.333 0.00 0.00 0.00 3.91
192 193 4.944048 AGCAACGCCTGAAGTTTATTTTT 58.056 34.783 0.00 0.00 0.00 1.94
193 194 4.584327 AGCAACGCCTGAAGTTTATTTT 57.416 36.364 0.00 0.00 0.00 1.82
194 195 4.037446 TGAAGCAACGCCTGAAGTTTATTT 59.963 37.500 0.00 0.00 0.00 1.40
195 196 3.568007 TGAAGCAACGCCTGAAGTTTATT 59.432 39.130 0.00 0.00 0.00 1.40
196 197 3.058224 GTGAAGCAACGCCTGAAGTTTAT 60.058 43.478 0.00 0.00 0.00 1.40
197 198 2.289547 GTGAAGCAACGCCTGAAGTTTA 59.710 45.455 0.00 0.00 0.00 2.01
198 199 1.065551 GTGAAGCAACGCCTGAAGTTT 59.934 47.619 0.00 0.00 0.00 2.66
199 200 0.663153 GTGAAGCAACGCCTGAAGTT 59.337 50.000 0.00 0.00 0.00 2.66
200 201 1.166531 GGTGAAGCAACGCCTGAAGT 61.167 55.000 5.66 0.00 37.45 3.01
201 202 1.576421 GGTGAAGCAACGCCTGAAG 59.424 57.895 5.66 0.00 37.45 3.02
202 203 2.250939 CGGTGAAGCAACGCCTGAA 61.251 57.895 10.18 0.00 37.86 3.02
203 204 2.664851 CGGTGAAGCAACGCCTGA 60.665 61.111 10.18 0.00 37.86 3.86
204 205 3.726517 CCGGTGAAGCAACGCCTG 61.727 66.667 0.00 1.56 43.82 4.85
205 206 4.250305 ACCGGTGAAGCAACGCCT 62.250 61.111 6.12 0.00 43.82 5.52
206 207 3.723348 GACCGGTGAAGCAACGCC 61.723 66.667 14.63 3.20 43.82 5.68
207 208 2.954753 CTGACCGGTGAAGCAACGC 61.955 63.158 14.63 0.00 43.82 4.84
208 209 1.300620 TCTGACCGGTGAAGCAACG 60.301 57.895 14.63 0.00 44.86 4.10
209 210 1.557443 CGTCTGACCGGTGAAGCAAC 61.557 60.000 14.63 3.73 0.00 4.17
210 211 1.300620 CGTCTGACCGGTGAAGCAA 60.301 57.895 14.63 0.00 0.00 3.91
211 212 2.338620 CGTCTGACCGGTGAAGCA 59.661 61.111 14.63 1.70 0.00 3.91
212 213 3.112709 GCGTCTGACCGGTGAAGC 61.113 66.667 14.63 14.94 0.00 3.86
213 214 2.432628 GGCGTCTGACCGGTGAAG 60.433 66.667 14.63 10.10 0.00 3.02
214 215 2.313051 TTTGGCGTCTGACCGGTGAA 62.313 55.000 14.63 0.00 0.00 3.18
215 216 2.798364 TTTGGCGTCTGACCGGTGA 61.798 57.895 14.63 0.65 0.00 4.02
216 217 2.280524 TTTGGCGTCTGACCGGTG 60.281 61.111 14.63 0.00 0.00 4.94
217 218 2.280592 GTTTGGCGTCTGACCGGT 60.281 61.111 6.92 6.92 0.00 5.28
218 219 2.280524 TGTTTGGCGTCTGACCGG 60.281 61.111 0.00 0.00 0.00 5.28
219 220 2.935955 GTGTTTGGCGTCTGACCG 59.064 61.111 1.55 0.00 0.00 4.79
220 221 0.949105 ATCGTGTTTGGCGTCTGACC 60.949 55.000 1.55 0.00 0.00 4.02
221 222 0.163788 CATCGTGTTTGGCGTCTGAC 59.836 55.000 0.00 0.00 0.00 3.51
222 223 1.565156 GCATCGTGTTTGGCGTCTGA 61.565 55.000 0.00 0.00 0.00 3.27
223 224 1.154413 GCATCGTGTTTGGCGTCTG 60.154 57.895 0.00 0.00 0.00 3.51
224 225 2.325082 GGCATCGTGTTTGGCGTCT 61.325 57.895 0.00 0.00 0.00 4.18
225 226 2.175811 GGCATCGTGTTTGGCGTC 59.824 61.111 0.00 0.00 0.00 5.19
226 227 3.361977 GGGCATCGTGTTTGGCGT 61.362 61.111 0.00 0.00 40.34 5.68
227 228 4.114997 GGGGCATCGTGTTTGGCG 62.115 66.667 0.00 0.00 40.34 5.69
228 229 4.114997 CGGGGCATCGTGTTTGGC 62.115 66.667 0.00 0.00 38.82 4.52
229 230 1.366111 CTACGGGGCATCGTGTTTGG 61.366 60.000 13.89 0.00 43.70 3.28
230 231 0.672401 ACTACGGGGCATCGTGTTTG 60.672 55.000 13.89 5.66 43.70 2.93
231 232 0.035739 AACTACGGGGCATCGTGTTT 59.964 50.000 13.89 5.41 43.70 2.83
232 233 0.390735 GAACTACGGGGCATCGTGTT 60.391 55.000 13.89 14.25 43.70 3.32
233 234 1.217244 GAACTACGGGGCATCGTGT 59.783 57.895 13.89 8.10 43.70 4.49
234 235 1.876714 CGAACTACGGGGCATCGTG 60.877 63.158 13.89 7.59 43.70 4.35
235 236 2.493030 CGAACTACGGGGCATCGT 59.507 61.111 9.80 9.80 45.88 3.73
236 237 2.960129 GCGAACTACGGGGCATCG 60.960 66.667 0.00 0.00 42.83 3.84
237 238 2.588034 GGCGAACTACGGGGCATC 60.588 66.667 0.00 0.00 42.83 3.91
238 239 3.395702 TGGCGAACTACGGGGCAT 61.396 61.111 0.00 0.00 42.83 4.40
239 240 4.382320 GTGGCGAACTACGGGGCA 62.382 66.667 0.00 0.00 42.83 5.36
240 241 4.382320 TGTGGCGAACTACGGGGC 62.382 66.667 0.00 0.00 42.83 5.80
241 242 2.125673 CTGTGGCGAACTACGGGG 60.126 66.667 0.00 0.00 42.83 5.73
242 243 0.320073 TTTCTGTGGCGAACTACGGG 60.320 55.000 0.00 0.00 42.83 5.28
243 244 1.504359 TTTTCTGTGGCGAACTACGG 58.496 50.000 0.00 0.00 42.83 4.02
244 245 2.798283 TCTTTTTCTGTGGCGAACTACG 59.202 45.455 0.00 0.00 45.66 3.51
245 246 4.319549 CCTTCTTTTTCTGTGGCGAACTAC 60.320 45.833 0.00 0.00 0.00 2.73
246 247 3.813166 CCTTCTTTTTCTGTGGCGAACTA 59.187 43.478 0.00 0.00 0.00 2.24
247 248 2.618709 CCTTCTTTTTCTGTGGCGAACT 59.381 45.455 0.00 0.00 0.00 3.01
248 249 2.287608 CCCTTCTTTTTCTGTGGCGAAC 60.288 50.000 0.00 0.00 0.00 3.95
249 250 1.953686 CCCTTCTTTTTCTGTGGCGAA 59.046 47.619 0.00 0.00 0.00 4.70
250 251 1.604604 CCCTTCTTTTTCTGTGGCGA 58.395 50.000 0.00 0.00 0.00 5.54
251 252 0.598065 CCCCTTCTTTTTCTGTGGCG 59.402 55.000 0.00 0.00 0.00 5.69
252 253 0.969149 CCCCCTTCTTTTTCTGTGGC 59.031 55.000 0.00 0.00 0.00 5.01
253 254 2.108250 TCTCCCCCTTCTTTTTCTGTGG 59.892 50.000 0.00 0.00 0.00 4.17
254 255 3.508845 TCTCCCCCTTCTTTTTCTGTG 57.491 47.619 0.00 0.00 0.00 3.66
255 256 4.749048 ATTCTCCCCCTTCTTTTTCTGT 57.251 40.909 0.00 0.00 0.00 3.41
256 257 6.319911 GTGATATTCTCCCCCTTCTTTTTCTG 59.680 42.308 0.00 0.00 0.00 3.02
257 258 6.011628 TGTGATATTCTCCCCCTTCTTTTTCT 60.012 38.462 0.00 0.00 0.00 2.52
258 259 6.187682 TGTGATATTCTCCCCCTTCTTTTTC 58.812 40.000 0.00 0.00 0.00 2.29
259 260 6.152638 TGTGATATTCTCCCCCTTCTTTTT 57.847 37.500 0.00 0.00 0.00 1.94
260 261 5.796502 TGTGATATTCTCCCCCTTCTTTT 57.203 39.130 0.00 0.00 0.00 2.27
261 262 5.433051 TCATGTGATATTCTCCCCCTTCTTT 59.567 40.000 0.00 0.00 0.00 2.52
262 263 4.977739 TCATGTGATATTCTCCCCCTTCTT 59.022 41.667 0.00 0.00 0.00 2.52
263 264 4.570926 TCATGTGATATTCTCCCCCTTCT 58.429 43.478 0.00 0.00 0.00 2.85
264 265 4.982241 TCATGTGATATTCTCCCCCTTC 57.018 45.455 0.00 0.00 0.00 3.46
265 266 5.251700 GGTATCATGTGATATTCTCCCCCTT 59.748 44.000 6.04 0.00 39.03 3.95
266 267 4.785376 GGTATCATGTGATATTCTCCCCCT 59.215 45.833 6.04 0.00 39.03 4.79
267 268 4.536090 TGGTATCATGTGATATTCTCCCCC 59.464 45.833 6.04 2.36 39.03 5.40
268 269 5.762179 TGGTATCATGTGATATTCTCCCC 57.238 43.478 6.04 2.96 39.03 4.81
269 270 6.428159 GTGTTGGTATCATGTGATATTCTCCC 59.572 42.308 6.04 3.56 39.03 4.30
270 271 7.220030 AGTGTTGGTATCATGTGATATTCTCC 58.780 38.462 6.04 3.87 39.03 3.71
271 272 8.668510 AAGTGTTGGTATCATGTGATATTCTC 57.331 34.615 6.04 0.00 39.03 2.87
276 277 9.435688 GCATATAAGTGTTGGTATCATGTGATA 57.564 33.333 0.00 0.00 36.05 2.15
277 278 8.159447 AGCATATAAGTGTTGGTATCATGTGAT 58.841 33.333 0.68 0.68 38.51 3.06
278 279 7.508687 AGCATATAAGTGTTGGTATCATGTGA 58.491 34.615 0.00 0.00 0.00 3.58
279 280 7.095060 GGAGCATATAAGTGTTGGTATCATGTG 60.095 40.741 0.00 0.00 0.00 3.21
280 281 6.936900 GGAGCATATAAGTGTTGGTATCATGT 59.063 38.462 0.00 0.00 0.00 3.21
281 282 6.372659 GGGAGCATATAAGTGTTGGTATCATG 59.627 42.308 0.00 0.00 0.00 3.07
282 283 6.044287 TGGGAGCATATAAGTGTTGGTATCAT 59.956 38.462 0.00 0.00 0.00 2.45
283 284 5.368230 TGGGAGCATATAAGTGTTGGTATCA 59.632 40.000 0.00 0.00 0.00 2.15
284 285 5.865085 TGGGAGCATATAAGTGTTGGTATC 58.135 41.667 0.00 0.00 0.00 2.24
285 286 5.904984 TGGGAGCATATAAGTGTTGGTAT 57.095 39.130 0.00 0.00 0.00 2.73
286 287 5.368230 TCATGGGAGCATATAAGTGTTGGTA 59.632 40.000 0.00 0.00 0.00 3.25
287 288 4.165950 TCATGGGAGCATATAAGTGTTGGT 59.834 41.667 0.00 0.00 0.00 3.67
288 289 4.717877 TCATGGGAGCATATAAGTGTTGG 58.282 43.478 0.00 0.00 0.00 3.77
289 290 7.825761 TGATATCATGGGAGCATATAAGTGTTG 59.174 37.037 0.00 0.00 0.00 3.33
290 291 7.921304 TGATATCATGGGAGCATATAAGTGTT 58.079 34.615 0.00 0.00 0.00 3.32
291 292 7.500629 TGATATCATGGGAGCATATAAGTGT 57.499 36.000 0.00 0.00 0.00 3.55
292 293 8.975663 ATTGATATCATGGGAGCATATAAGTG 57.024 34.615 6.17 0.00 0.00 3.16
293 294 9.624373 GAATTGATATCATGGGAGCATATAAGT 57.376 33.333 6.17 0.00 0.00 2.24
294 295 9.623000 TGAATTGATATCATGGGAGCATATAAG 57.377 33.333 6.17 0.00 0.00 1.73
295 296 9.978336 TTGAATTGATATCATGGGAGCATATAA 57.022 29.630 6.17 0.00 0.00 0.98
296 297 9.978336 TTTGAATTGATATCATGGGAGCATATA 57.022 29.630 6.17 0.00 0.00 0.86
297 298 8.888836 TTTGAATTGATATCATGGGAGCATAT 57.111 30.769 6.17 0.00 0.00 1.78
298 299 8.709272 TTTTGAATTGATATCATGGGAGCATA 57.291 30.769 6.17 0.00 0.00 3.14
299 300 7.606135 TTTTGAATTGATATCATGGGAGCAT 57.394 32.000 6.17 0.00 0.00 3.79
300 301 7.421087 TTTTTGAATTGATATCATGGGAGCA 57.579 32.000 6.17 0.00 0.00 4.26
301 302 8.897872 AATTTTTGAATTGATATCATGGGAGC 57.102 30.769 6.17 0.00 0.00 4.70
354 355 9.146984 CATATGTTGAGAACAAGCATGATTTTT 57.853 29.630 0.00 0.00 45.86 1.94
355 356 8.308931 ACATATGTTGAGAACAAGCATGATTTT 58.691 29.630 1.41 0.00 45.86 1.82
356 357 7.758076 CACATATGTTGAGAACAAGCATGATTT 59.242 33.333 5.37 0.00 45.86 2.17
357 358 7.094075 ACACATATGTTGAGAACAAGCATGATT 60.094 33.333 5.37 0.00 45.86 2.57
358 359 6.376299 ACACATATGTTGAGAACAAGCATGAT 59.624 34.615 5.37 0.00 45.86 2.45
359 360 5.706833 ACACATATGTTGAGAACAAGCATGA 59.293 36.000 5.37 0.00 45.86 3.07
360 361 5.946298 ACACATATGTTGAGAACAAGCATG 58.054 37.500 5.37 0.00 45.86 4.06
374 375 5.811190 TGTAGGGCTTGTAAACACATATGT 58.189 37.500 1.41 1.41 42.46 2.29
375 376 6.751514 TTGTAGGGCTTGTAAACACATATG 57.248 37.500 0.00 0.00 0.00 1.78
376 377 7.768807 TTTTGTAGGGCTTGTAAACACATAT 57.231 32.000 0.00 0.00 0.00 1.78
377 378 7.584122 TTTTTGTAGGGCTTGTAAACACATA 57.416 32.000 0.00 0.00 0.00 2.29
378 379 6.472686 TTTTTGTAGGGCTTGTAAACACAT 57.527 33.333 0.00 0.00 0.00 3.21
379 380 5.916661 TTTTTGTAGGGCTTGTAAACACA 57.083 34.783 0.00 0.00 0.00 3.72
380 381 6.508777 TGATTTTTGTAGGGCTTGTAAACAC 58.491 36.000 0.00 0.00 0.00 3.32
381 382 6.547880 TCTGATTTTTGTAGGGCTTGTAAACA 59.452 34.615 0.00 0.00 0.00 2.83
382 383 6.977213 TCTGATTTTTGTAGGGCTTGTAAAC 58.023 36.000 0.00 0.00 0.00 2.01
383 384 7.093945 GGATCTGATTTTTGTAGGGCTTGTAAA 60.094 37.037 0.00 0.00 0.00 2.01
384 385 6.377146 GGATCTGATTTTTGTAGGGCTTGTAA 59.623 38.462 0.00 0.00 0.00 2.41
385 386 5.885912 GGATCTGATTTTTGTAGGGCTTGTA 59.114 40.000 0.00 0.00 0.00 2.41
386 387 4.706962 GGATCTGATTTTTGTAGGGCTTGT 59.293 41.667 0.00 0.00 0.00 3.16
387 388 4.706476 TGGATCTGATTTTTGTAGGGCTTG 59.294 41.667 0.00 0.00 0.00 4.01
388 389 4.934356 TGGATCTGATTTTTGTAGGGCTT 58.066 39.130 0.00 0.00 0.00 4.35
389 390 4.591321 TGGATCTGATTTTTGTAGGGCT 57.409 40.909 0.00 0.00 0.00 5.19
390 391 5.659440 TTTGGATCTGATTTTTGTAGGGC 57.341 39.130 0.00 0.00 0.00 5.19
391 392 8.313292 TCAAATTTGGATCTGATTTTTGTAGGG 58.687 33.333 17.90 0.00 0.00 3.53
392 393 9.362539 CTCAAATTTGGATCTGATTTTTGTAGG 57.637 33.333 17.90 0.00 0.00 3.18
395 396 9.835389 TTTCTCAAATTTGGATCTGATTTTTGT 57.165 25.926 17.90 0.00 0.00 2.83
397 398 9.835389 TGTTTCTCAAATTTGGATCTGATTTTT 57.165 25.926 17.90 0.00 0.00 1.94
398 399 9.835389 TTGTTTCTCAAATTTGGATCTGATTTT 57.165 25.926 17.90 0.00 32.64 1.82
399 400 9.835389 TTTGTTTCTCAAATTTGGATCTGATTT 57.165 25.926 17.90 0.00 40.56 2.17
400 401 9.835389 TTTTGTTTCTCAAATTTGGATCTGATT 57.165 25.926 17.90 0.00 44.15 2.57
401 402 9.835389 TTTTTGTTTCTCAAATTTGGATCTGAT 57.165 25.926 17.90 0.00 44.15 2.90
511 512 8.489990 TCAAATTGTGCAATGAGAAAGAAAAA 57.510 26.923 0.00 0.00 0.00 1.94
512 513 8.489990 TTCAAATTGTGCAATGAGAAAGAAAA 57.510 26.923 0.00 0.00 0.00 2.29
513 514 8.665643 ATTCAAATTGTGCAATGAGAAAGAAA 57.334 26.923 12.78 0.00 32.22 2.52
514 515 8.665643 AATTCAAATTGTGCAATGAGAAAGAA 57.334 26.923 12.78 6.47 32.22 2.52
515 516 8.552865 CAAATTCAAATTGTGCAATGAGAAAGA 58.447 29.630 12.78 0.00 32.22 2.52
516 517 7.801315 CCAAATTCAAATTGTGCAATGAGAAAG 59.199 33.333 12.78 8.37 32.22 2.62
517 518 7.498239 TCCAAATTCAAATTGTGCAATGAGAAA 59.502 29.630 12.78 2.53 32.22 2.52
518 519 6.990939 TCCAAATTCAAATTGTGCAATGAGAA 59.009 30.769 11.78 11.78 32.66 2.87
519 520 6.522946 TCCAAATTCAAATTGTGCAATGAGA 58.477 32.000 0.00 0.00 0.00 3.27
520 521 6.788684 TCCAAATTCAAATTGTGCAATGAG 57.211 33.333 0.00 0.00 0.00 2.90
521 522 7.118535 CAGATCCAAATTCAAATTGTGCAATGA 59.881 33.333 0.00 0.00 0.00 2.57
522 523 7.118535 TCAGATCCAAATTCAAATTGTGCAATG 59.881 33.333 0.00 0.00 0.00 2.82
523 524 7.162761 TCAGATCCAAATTCAAATTGTGCAAT 58.837 30.769 0.00 0.00 0.00 3.56
524 525 6.522946 TCAGATCCAAATTCAAATTGTGCAA 58.477 32.000 0.00 0.00 0.00 4.08
525 526 6.099159 TCAGATCCAAATTCAAATTGTGCA 57.901 33.333 0.00 0.00 0.00 4.57
526 527 7.605410 AATCAGATCCAAATTCAAATTGTGC 57.395 32.000 0.00 0.00 0.00 4.57
551 552 8.630054 ACATATGTGTCTACAAGCCTTAAAAA 57.370 30.769 7.78 0.00 40.84 1.94
552 553 8.511321 CAACATATGTGTCTACAAGCCTTAAAA 58.489 33.333 9.63 0.00 40.84 1.52
553 554 7.880713 TCAACATATGTGTCTACAAGCCTTAAA 59.119 33.333 9.63 0.00 40.84 1.52
554 555 7.390823 TCAACATATGTGTCTACAAGCCTTAA 58.609 34.615 9.63 0.00 40.84 1.85
555 556 6.941857 TCAACATATGTGTCTACAAGCCTTA 58.058 36.000 9.63 0.00 40.84 2.69
556 557 5.804639 TCAACATATGTGTCTACAAGCCTT 58.195 37.500 9.63 0.00 40.84 4.35
557 558 5.187772 TCTCAACATATGTGTCTACAAGCCT 59.812 40.000 9.63 0.00 40.84 4.58
558 559 5.419542 TCTCAACATATGTGTCTACAAGCC 58.580 41.667 9.63 0.00 40.84 4.35
559 560 6.368791 TGTTCTCAACATATGTGTCTACAAGC 59.631 38.462 9.63 0.00 37.08 4.01
560 561 7.889589 TGTTCTCAACATATGTGTCTACAAG 57.110 36.000 9.63 0.32 37.08 3.16
626 627 9.659135 TCTCCCATGATACCAATTCAAAATATT 57.341 29.630 0.00 0.00 0.00 1.28
627 628 9.659135 TTCTCCCATGATACCAATTCAAAATAT 57.341 29.630 0.00 0.00 0.00 1.28
628 629 9.659135 ATTCTCCCATGATACCAATTCAAAATA 57.341 29.630 0.00 0.00 0.00 1.40
629 630 7.976414 TTCTCCCATGATACCAATTCAAAAT 57.024 32.000 0.00 0.00 0.00 1.82
630 631 7.399765 ACATTCTCCCATGATACCAATTCAAAA 59.600 33.333 0.00 0.00 0.00 2.44
631 632 6.896860 ACATTCTCCCATGATACCAATTCAAA 59.103 34.615 0.00 0.00 0.00 2.69
632 633 6.434302 ACATTCTCCCATGATACCAATTCAA 58.566 36.000 0.00 0.00 0.00 2.69
633 634 6.017211 ACATTCTCCCATGATACCAATTCA 57.983 37.500 0.00 0.00 0.00 2.57
634 635 7.721399 ACTTACATTCTCCCATGATACCAATTC 59.279 37.037 0.00 0.00 0.00 2.17
635 636 7.503566 CACTTACATTCTCCCATGATACCAATT 59.496 37.037 0.00 0.00 0.00 2.32
636 637 7.000472 CACTTACATTCTCCCATGATACCAAT 59.000 38.462 0.00 0.00 0.00 3.16
637 638 6.069673 ACACTTACATTCTCCCATGATACCAA 60.070 38.462 0.00 0.00 0.00 3.67
638 639 5.428457 ACACTTACATTCTCCCATGATACCA 59.572 40.000 0.00 0.00 0.00 3.25
639 640 5.930135 ACACTTACATTCTCCCATGATACC 58.070 41.667 0.00 0.00 0.00 2.73
640 641 6.260936 CCAACACTTACATTCTCCCATGATAC 59.739 42.308 0.00 0.00 0.00 2.24
641 642 6.069673 ACCAACACTTACATTCTCCCATGATA 60.070 38.462 0.00 0.00 0.00 2.15
642 643 5.195940 CCAACACTTACATTCTCCCATGAT 58.804 41.667 0.00 0.00 0.00 2.45
643 644 4.042809 ACCAACACTTACATTCTCCCATGA 59.957 41.667 0.00 0.00 0.00 3.07
644 645 4.335416 ACCAACACTTACATTCTCCCATG 58.665 43.478 0.00 0.00 0.00 3.66
645 646 4.657814 ACCAACACTTACATTCTCCCAT 57.342 40.909 0.00 0.00 0.00 4.00
646 647 5.249622 TGATACCAACACTTACATTCTCCCA 59.750 40.000 0.00 0.00 0.00 4.37
647 648 5.741011 TGATACCAACACTTACATTCTCCC 58.259 41.667 0.00 0.00 0.00 4.30
648 649 6.238484 GCATGATACCAACACTTACATTCTCC 60.238 42.308 0.00 0.00 0.00 3.71
649 650 6.238484 GGCATGATACCAACACTTACATTCTC 60.238 42.308 0.00 0.00 0.00 2.87
650 651 5.590259 GGCATGATACCAACACTTACATTCT 59.410 40.000 0.00 0.00 0.00 2.40
651 652 5.221048 GGGCATGATACCAACACTTACATTC 60.221 44.000 0.00 0.00 0.00 2.67
652 653 4.644685 GGGCATGATACCAACACTTACATT 59.355 41.667 0.00 0.00 0.00 2.71
653 654 4.207165 GGGCATGATACCAACACTTACAT 58.793 43.478 0.00 0.00 0.00 2.29
654 655 3.009584 TGGGCATGATACCAACACTTACA 59.990 43.478 0.00 0.00 32.89 2.41
655 656 3.616219 TGGGCATGATACCAACACTTAC 58.384 45.455 0.00 0.00 32.89 2.34
656 657 4.018870 TCTTGGGCATGATACCAACACTTA 60.019 41.667 11.48 0.00 41.56 2.24
657 658 2.897271 TGGGCATGATACCAACACTT 57.103 45.000 0.00 0.00 32.89 3.16
658 659 2.308570 TCTTGGGCATGATACCAACACT 59.691 45.455 11.48 0.00 41.56 3.55
659 660 2.722094 TCTTGGGCATGATACCAACAC 58.278 47.619 11.48 0.00 41.56 3.32
660 661 3.010027 TCTTCTTGGGCATGATACCAACA 59.990 43.478 11.48 1.65 41.56 3.33
661 662 3.620488 TCTTCTTGGGCATGATACCAAC 58.380 45.455 11.48 0.00 41.56 3.77
662 663 4.272489 CTTCTTCTTGGGCATGATACCAA 58.728 43.478 13.91 13.91 44.04 3.67
663 664 3.371917 CCTTCTTCTTGGGCATGATACCA 60.372 47.826 0.00 0.00 34.29 3.25
664 665 3.217626 CCTTCTTCTTGGGCATGATACC 58.782 50.000 0.00 0.00 0.00 2.73
665 666 3.879892 GACCTTCTTCTTGGGCATGATAC 59.120 47.826 0.00 0.00 0.00 2.24
666 667 3.782523 AGACCTTCTTCTTGGGCATGATA 59.217 43.478 0.00 0.00 32.68 2.15
667 668 2.579860 AGACCTTCTTCTTGGGCATGAT 59.420 45.455 0.00 0.00 32.68 2.45
668 669 1.988107 AGACCTTCTTCTTGGGCATGA 59.012 47.619 0.00 0.00 32.68 3.07
669 670 2.503895 AGACCTTCTTCTTGGGCATG 57.496 50.000 0.00 0.00 32.68 4.06
670 671 3.078891 GAAGACCTTCTTCTTGGGCAT 57.921 47.619 8.41 0.00 46.98 4.40
671 672 2.568623 GAAGACCTTCTTCTTGGGCA 57.431 50.000 8.41 0.00 46.98 5.36
685 686 1.104630 CGAGGGGGTCACTAGAAGAC 58.895 60.000 0.00 4.08 35.29 3.01
686 687 0.683504 GCGAGGGGGTCACTAGAAGA 60.684 60.000 0.00 0.00 0.00 2.87
687 688 1.677637 GGCGAGGGGGTCACTAGAAG 61.678 65.000 0.00 0.00 0.00 2.85
688 689 1.684734 GGCGAGGGGGTCACTAGAA 60.685 63.158 0.00 0.00 0.00 2.10
689 690 2.043248 GGCGAGGGGGTCACTAGA 60.043 66.667 0.00 0.00 0.00 2.43
690 691 2.042843 AGGCGAGGGGGTCACTAG 60.043 66.667 0.00 0.00 0.00 2.57
691 692 2.043248 GAGGCGAGGGGGTCACTA 60.043 66.667 0.00 0.00 0.00 2.74
704 705 4.699522 AGAACGTTGGGCCGAGGC 62.700 66.667 5.00 5.37 41.06 4.70
705 706 2.742372 CAGAACGTTGGGCCGAGG 60.742 66.667 5.00 11.93 0.00 4.63
933 934 1.338484 TGCGTACTGGACTACGAGTCT 60.338 52.381 12.62 0.04 44.46 3.24
934 935 1.062294 CTGCGTACTGGACTACGAGTC 59.938 57.143 3.02 6.50 44.32 3.36
935 936 1.085091 CTGCGTACTGGACTACGAGT 58.915 55.000 3.02 0.00 41.75 4.18
936 937 1.085091 ACTGCGTACTGGACTACGAG 58.915 55.000 3.02 1.22 41.75 4.18
937 938 2.002586 GTACTGCGTACTGGACTACGA 58.997 52.381 10.35 0.00 41.75 3.43
938 939 1.733912 TGTACTGCGTACTGGACTACG 59.266 52.381 16.13 0.00 42.04 3.51
939 940 4.554330 GCTATGTACTGCGTACTGGACTAC 60.554 50.000 16.13 0.00 39.49 2.73
940 941 3.562973 GCTATGTACTGCGTACTGGACTA 59.437 47.826 16.13 0.68 39.49 2.59
948 949 2.951457 TGCTTGCTATGTACTGCGTA 57.049 45.000 0.00 0.00 0.00 4.42
956 957 4.757594 CTCTCTTCTCTTGCTTGCTATGT 58.242 43.478 0.00 0.00 0.00 2.29
979 985 0.965866 TCTCCCACGTAGCTGGTCTG 60.966 60.000 0.00 0.00 0.00 3.51
989 995 2.284625 TGCCCATCTCTCCCACGT 60.285 61.111 0.00 0.00 0.00 4.49
992 998 2.285592 TGCTGCCCATCTCTCCCA 60.286 61.111 0.00 0.00 0.00 4.37
1163 1171 1.203994 GCAAACAATGGAGCAGAGCAT 59.796 47.619 0.00 0.00 0.00 3.79
1177 1185 0.602638 ACGGAGCTCATTCGCAAACA 60.603 50.000 17.19 0.00 0.00 2.83
1182 1190 0.517316 AAAACACGGAGCTCATTCGC 59.483 50.000 17.19 0.00 0.00 4.70
1183 1191 2.993899 ACTAAAACACGGAGCTCATTCG 59.006 45.455 17.19 12.61 0.00 3.34
1184 1192 4.451096 TGAACTAAAACACGGAGCTCATTC 59.549 41.667 17.19 0.00 0.00 2.67
1185 1193 4.385825 TGAACTAAAACACGGAGCTCATT 58.614 39.130 17.19 0.00 0.00 2.57
1186 1194 4.002906 TGAACTAAAACACGGAGCTCAT 57.997 40.909 17.19 0.00 0.00 2.90
1187 1195 3.462483 TGAACTAAAACACGGAGCTCA 57.538 42.857 17.19 0.00 0.00 4.26
1188 1196 4.092091 CAGATGAACTAAAACACGGAGCTC 59.908 45.833 4.71 4.71 0.00 4.09
1189 1197 3.997021 CAGATGAACTAAAACACGGAGCT 59.003 43.478 0.00 0.00 0.00 4.09
1190 1198 3.994392 TCAGATGAACTAAAACACGGAGC 59.006 43.478 0.00 0.00 0.00 4.70
1191 1199 6.035435 CAGATCAGATGAACTAAAACACGGAG 59.965 42.308 0.00 0.00 0.00 4.63
1192 1200 5.869344 CAGATCAGATGAACTAAAACACGGA 59.131 40.000 0.00 0.00 0.00 4.69
1194 1202 6.587990 AGTCAGATCAGATGAACTAAAACACG 59.412 38.462 0.00 0.00 0.00 4.49
1195 1203 7.623089 GCAGTCAGATCAGATGAACTAAAACAC 60.623 40.741 0.00 0.00 0.00 3.32
1200 1208 5.163468 GGAGCAGTCAGATCAGATGAACTAA 60.163 44.000 0.00 0.00 33.23 2.24
1203 1211 3.456280 GGAGCAGTCAGATCAGATGAAC 58.544 50.000 0.00 0.00 33.23 3.18
1204 1212 2.100418 CGGAGCAGTCAGATCAGATGAA 59.900 50.000 0.00 0.00 33.23 2.57
1205 1213 1.680207 CGGAGCAGTCAGATCAGATGA 59.320 52.381 0.00 0.00 33.23 2.92
1206 1214 1.269673 CCGGAGCAGTCAGATCAGATG 60.270 57.143 0.00 0.00 33.23 2.90
1207 1215 1.039068 CCGGAGCAGTCAGATCAGAT 58.961 55.000 0.00 0.00 33.23 2.90
1208 1216 1.039785 CCCGGAGCAGTCAGATCAGA 61.040 60.000 0.73 0.00 33.23 3.27
1385 1399 5.652744 TCAACGTAAACAGAGAAAAGAGC 57.347 39.130 0.00 0.00 0.00 4.09
1423 1439 1.697910 TCCCCTGTGGAGAGTCGAT 59.302 57.895 0.00 0.00 38.61 3.59
1512 1528 3.492337 AGGGAGAAGAACTAGCTATCGG 58.508 50.000 0.00 0.00 0.00 4.18
1590 1606 6.381498 TGAAATGAATACTAACCCCACTGA 57.619 37.500 0.00 0.00 0.00 3.41
1659 1688 4.634004 TGCCGGAAGAACAACACATATTAG 59.366 41.667 5.05 0.00 0.00 1.73
1668 1697 1.200020 CAATCCTGCCGGAAGAACAAC 59.800 52.381 12.53 0.00 44.02 3.32
1700 1729 2.945668 ACCGTACGTTATCCCAGAGTAC 59.054 50.000 15.21 0.00 35.60 2.73
1768 1797 9.762933 AAACAGCAAGCAGAAAAATAATTTAGA 57.237 25.926 0.00 0.00 0.00 2.10
1795 1824 6.265649 AGTTAATTCCGAAGCTAGCTGATCTA 59.734 38.462 20.16 4.75 0.00 1.98
1807 1836 2.359900 AGCAGCCAGTTAATTCCGAAG 58.640 47.619 0.00 0.00 0.00 3.79
1811 1840 5.880887 AGTTAGTTAGCAGCCAGTTAATTCC 59.119 40.000 0.00 0.00 0.00 3.01
1873 1908 3.226429 GATCGCCCCTGCTATCGCA 62.226 63.158 0.00 0.00 45.60 5.10
2011 2046 4.096003 CTAGCCCCACACCCCGTG 62.096 72.222 0.00 0.00 45.92 4.94
2016 2051 1.984288 CTTAGCCCTAGCCCCACACC 61.984 65.000 0.00 0.00 41.25 4.16
2017 2052 0.981277 TCTTAGCCCTAGCCCCACAC 60.981 60.000 0.00 0.00 41.25 3.82
2018 2053 0.252974 TTCTTAGCCCTAGCCCCACA 60.253 55.000 0.00 0.00 41.25 4.17
2061 2096 7.767198 TGGAGAAATTAAGGGAAATACAGTACG 59.233 37.037 0.00 0.00 0.00 3.67
2170 2205 4.306600 CAAAGGGAACAAACATTACAGCC 58.693 43.478 0.00 0.00 0.00 4.85
2303 2339 4.339814 CCTAGCCTATCCGATCCATAGAAC 59.660 50.000 7.61 1.63 0.00 3.01
2317 2353 2.969950 TGTTGCCGTAATCCTAGCCTAT 59.030 45.455 0.00 0.00 0.00 2.57
2330 2366 1.070786 CTACCACCACTGTTGCCGT 59.929 57.895 0.00 0.00 0.00 5.68
2393 2432 3.399181 ATCACCGGCCACCGTCAT 61.399 61.111 0.00 0.00 46.80 3.06
2421 2473 4.162690 CCGCCACCCCTACTCTGC 62.163 72.222 0.00 0.00 0.00 4.26
2422 2474 2.683933 ACCGCCACCCCTACTCTG 60.684 66.667 0.00 0.00 0.00 3.35
2423 2475 2.683933 CACCGCCACCCCTACTCT 60.684 66.667 0.00 0.00 0.00 3.24
2424 2476 4.468689 GCACCGCCACCCCTACTC 62.469 72.222 0.00 0.00 0.00 2.59
2426 2478 3.971109 GAAGCACCGCCACCCCTAC 62.971 68.421 0.00 0.00 0.00 3.18
2427 2479 3.712907 GAAGCACCGCCACCCCTA 61.713 66.667 0.00 0.00 0.00 3.53
2446 2499 0.456221 CCCTACCTACAGTGCTGACG 59.544 60.000 6.17 0.00 0.00 4.35
2447 2500 1.204941 CACCCTACCTACAGTGCTGAC 59.795 57.143 6.17 0.00 0.00 3.51
2448 2501 1.203137 ACACCCTACCTACAGTGCTGA 60.203 52.381 6.17 0.00 33.46 4.26
2449 2502 1.267121 ACACCCTACCTACAGTGCTG 58.733 55.000 0.00 0.00 33.46 4.41
2451 2504 1.133790 CGTACACCCTACCTACAGTGC 59.866 57.143 0.00 0.00 33.46 4.40
2452 2505 1.747355 CCGTACACCCTACCTACAGTG 59.253 57.143 0.00 0.00 36.30 3.66
2453 2506 1.957113 GCCGTACACCCTACCTACAGT 60.957 57.143 0.00 0.00 0.00 3.55
2454 2507 0.743097 GCCGTACACCCTACCTACAG 59.257 60.000 0.00 0.00 0.00 2.74
2547 2628 1.141019 GGCGCTCAACCGACTATGA 59.859 57.895 7.64 0.00 32.31 2.15
2568 2649 2.300152 CCTTAGATCTGCGCCCTAATCA 59.700 50.000 4.18 0.00 0.00 2.57
2572 2653 1.472662 GCCCTTAGATCTGCGCCCTA 61.473 60.000 4.18 0.00 0.00 3.53
2633 2717 6.641169 AAAGTTGAGATCAAGGAGGAAAAC 57.359 37.500 0.00 0.00 36.39 2.43
2636 2720 7.079451 AGTAAAAGTTGAGATCAAGGAGGAA 57.921 36.000 0.00 0.00 36.39 3.36
2750 2839 4.154015 CGTTGTGGCTGTCTGATTTTATCA 59.846 41.667 0.00 0.00 37.76 2.15
2755 2844 1.967319 ACGTTGTGGCTGTCTGATTT 58.033 45.000 0.00 0.00 0.00 2.17
2810 2899 9.127277 TCTAATATTTCCGGACAATAAAAAGGG 57.873 33.333 1.83 2.51 0.00 3.95
2831 2921 7.669722 ACACACAGTCATGGGTTTTATTCTAAT 59.330 33.333 0.00 0.00 41.54 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.