Multiple sequence alignment - TraesCS5D01G050700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G050700 chr5D 100.000 3910 0 0 856 4765 48670190 48674099 0.000000e+00 7221
1 TraesCS5D01G050700 chr5D 100.000 438 0 0 1 438 48669335 48669772 0.000000e+00 809
2 TraesCS5D01G050700 chr5D 96.111 360 12 2 4407 4765 546388229 546388587 1.910000e-163 586
3 TraesCS5D01G050700 chr5A 94.133 3034 128 23 856 3855 38130306 38133323 0.000000e+00 4571
4 TraesCS5D01G050700 chr5A 82.472 445 40 20 23 438 38129771 38130206 5.870000e-94 355
5 TraesCS5D01G050700 chr5B 91.887 3057 163 44 857 3855 51157992 51161021 0.000000e+00 4193
6 TraesCS5D01G050700 chr5B 86.875 800 89 9 877 1675 555181735 555182519 0.000000e+00 881
7 TraesCS5D01G050700 chr5B 87.612 557 55 8 3854 4408 246217193 246217737 6.730000e-178 634
8 TraesCS5D01G050700 chr4D 96.071 560 16 3 3854 4411 154549503 154548948 0.000000e+00 907
9 TraesCS5D01G050700 chr4D 96.078 357 12 2 4410 4765 110232135 110231780 8.890000e-162 580
10 TraesCS5D01G050700 chr2A 87.234 799 85 7 1046 1837 648133730 648132942 0.000000e+00 894
11 TraesCS5D01G050700 chr2A 88.767 454 48 2 3874 4327 525419376 525418926 1.940000e-153 553
12 TraesCS5D01G050700 chr2B 94.831 561 20 5 3854 4411 773869581 773869027 0.000000e+00 867
13 TraesCS5D01G050700 chr2B 90.996 522 25 9 3854 4372 94263574 94264076 0.000000e+00 684
14 TraesCS5D01G050700 chr1A 94.662 562 20 5 3854 4411 582698436 582698991 0.000000e+00 863
15 TraesCS5D01G050700 chr7A 94.296 561 23 4 3854 4411 622858827 622859381 0.000000e+00 850
16 TraesCS5D01G050700 chr7A 85.361 526 47 11 2071 2566 40047941 40047416 7.070000e-143 518
17 TraesCS5D01G050700 chr7A 87.324 142 13 3 2638 2778 40046787 40046650 1.780000e-34 158
18 TraesCS5D01G050700 chr7A 88.710 124 14 0 2776 2899 40046575 40046452 8.260000e-33 152
19 TraesCS5D01G050700 chr7B 92.844 559 33 3 3854 4411 662424784 662425336 0.000000e+00 804
20 TraesCS5D01G050700 chr4A 90.996 522 25 9 3854 4372 655256389 655256891 0.000000e+00 684
21 TraesCS5D01G050700 chr7D 94.947 376 14 5 4393 4765 7654975 7654602 6.870000e-163 584
22 TraesCS5D01G050700 chr7D 96.078 357 12 2 4410 4765 554556218 554555863 8.890000e-162 580
23 TraesCS5D01G050700 chr7D 96.089 358 11 3 4410 4765 578386371 578386015 8.890000e-162 580
24 TraesCS5D01G050700 chr7D 96.078 357 12 2 4410 4765 588750461 588750106 8.890000e-162 580
25 TraesCS5D01G050700 chr7D 85.171 526 48 8 2071 2566 40129471 40128946 3.290000e-141 512
26 TraesCS5D01G050700 chr7D 87.234 141 15 1 2638 2778 40128308 40128171 1.780000e-34 158
27 TraesCS5D01G050700 chr7D 88.710 124 14 0 2776 2899 40128096 40127973 8.260000e-33 152
28 TraesCS5D01G050700 chr3D 95.833 360 13 2 4407 4765 524537915 524538273 8.890000e-162 580
29 TraesCS5D01G050700 chr3D 86.233 523 46 13 2071 2568 6749591 6750112 1.170000e-150 544
30 TraesCS5D01G050700 chr3D 90.323 124 12 0 2776 2899 6751047 6751170 3.820000e-36 163
31 TraesCS5D01G050700 chr3D 84.397 141 22 0 2638 2778 6750833 6750973 6.430000e-29 139
32 TraesCS5D01G050700 chr2D 95.833 360 13 2 4407 4765 39905345 39905703 8.890000e-162 580
33 TraesCS5D01G050700 chr1D 94.681 376 16 4 4390 4765 79057934 79058305 8.890000e-162 580
34 TraesCS5D01G050700 chr3A 86.260 524 45 13 2071 2568 13500967 13500445 1.170000e-150 544
35 TraesCS5D01G050700 chr3A 90.323 124 12 0 2776 2899 13499472 13499349 3.820000e-36 163
36 TraesCS5D01G050700 chr3A 85.106 141 21 0 2638 2778 13499686 13499546 1.380000e-30 145
37 TraesCS5D01G050700 chr3B 85.905 525 46 15 2071 2568 8342637 8343160 7.020000e-148 534
38 TraesCS5D01G050700 chr3B 90.323 124 12 0 2776 2899 8343612 8343735 3.820000e-36 163
39 TraesCS5D01G050700 chr3B 85.106 141 21 0 2638 2778 8343398 8343538 1.380000e-30 145
40 TraesCS5D01G050700 chrUn 85.551 526 46 8 2071 2566 49237540 49238065 1.520000e-144 523


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G050700 chr5D 48669335 48674099 4764 False 4015.000000 7221 100.000000 1 4765 2 chr5D.!!$F2 4764
1 TraesCS5D01G050700 chr5A 38129771 38133323 3552 False 2463.000000 4571 88.302500 23 3855 2 chr5A.!!$F1 3832
2 TraesCS5D01G050700 chr5B 51157992 51161021 3029 False 4193.000000 4193 91.887000 857 3855 1 chr5B.!!$F1 2998
3 TraesCS5D01G050700 chr5B 555181735 555182519 784 False 881.000000 881 86.875000 877 1675 1 chr5B.!!$F3 798
4 TraesCS5D01G050700 chr5B 246217193 246217737 544 False 634.000000 634 87.612000 3854 4408 1 chr5B.!!$F2 554
5 TraesCS5D01G050700 chr4D 154548948 154549503 555 True 907.000000 907 96.071000 3854 4411 1 chr4D.!!$R2 557
6 TraesCS5D01G050700 chr2A 648132942 648133730 788 True 894.000000 894 87.234000 1046 1837 1 chr2A.!!$R2 791
7 TraesCS5D01G050700 chr2B 773869027 773869581 554 True 867.000000 867 94.831000 3854 4411 1 chr2B.!!$R1 557
8 TraesCS5D01G050700 chr2B 94263574 94264076 502 False 684.000000 684 90.996000 3854 4372 1 chr2B.!!$F1 518
9 TraesCS5D01G050700 chr1A 582698436 582698991 555 False 863.000000 863 94.662000 3854 4411 1 chr1A.!!$F1 557
10 TraesCS5D01G050700 chr7A 622858827 622859381 554 False 850.000000 850 94.296000 3854 4411 1 chr7A.!!$F1 557
11 TraesCS5D01G050700 chr7A 40046452 40047941 1489 True 276.000000 518 87.131667 2071 2899 3 chr7A.!!$R1 828
12 TraesCS5D01G050700 chr7B 662424784 662425336 552 False 804.000000 804 92.844000 3854 4411 1 chr7B.!!$F1 557
13 TraesCS5D01G050700 chr4A 655256389 655256891 502 False 684.000000 684 90.996000 3854 4372 1 chr4A.!!$F1 518
14 TraesCS5D01G050700 chr7D 40127973 40129471 1498 True 274.000000 512 87.038333 2071 2899 3 chr7D.!!$R5 828
15 TraesCS5D01G050700 chr3D 6749591 6751170 1579 False 282.000000 544 86.984333 2071 2899 3 chr3D.!!$F2 828
16 TraesCS5D01G050700 chr3A 13499349 13500967 1618 True 284.000000 544 87.229667 2071 2899 3 chr3A.!!$R1 828
17 TraesCS5D01G050700 chr3B 8342637 8343735 1098 False 280.666667 534 87.111333 2071 2899 3 chr3B.!!$F1 828
18 TraesCS5D01G050700 chrUn 49237540 49238065 525 False 523.000000 523 85.551000 2071 2566 1 chrUn.!!$F1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.103572 CATAGCCCATGTTGCAAGCC 59.896 55.0 0.00 0.00 0.00 4.35 F
392 418 0.169009 GTGGCAGCGACAAATTCCTC 59.831 55.0 2.08 0.00 0.00 3.71 F
1420 1457 0.100861 GAGATCCACCGAGTTCCGTC 59.899 60.0 0.00 0.00 36.31 4.79 F
2079 2118 1.174712 TTTCTGAGTTGGCTGCCAGC 61.175 55.0 25.77 25.77 41.46 4.85 F
3012 3942 1.195115 CGTCAGGGGATGGAGAAGAA 58.805 55.0 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1438 0.100861 GACGGAACTCGGTGGATCTC 59.899 60.0 0.00 0.0 44.45 2.75 R
1587 1624 0.178767 TCAAGCCATGGATGTCCTCG 59.821 55.0 18.40 0.0 36.82 4.63 R
3394 4324 0.318762 GCTGTTCCTCTTCCTCACGT 59.681 55.0 0.00 0.0 0.00 4.49 R
3463 4396 0.318441 CACGTTGCTCCTCTTCCTCA 59.682 55.0 0.00 0.0 0.00 3.86 R
4429 5409 0.033503 AAGGCCTTTATGAACCGGGG 60.034 55.0 13.78 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.350522 CCTACGCTCAAGAGTTTGCAT 58.649 47.619 0.00 0.00 34.21 3.96
34 35 3.599343 ACGCTCAAGAGTTTGCATCATA 58.401 40.909 0.00 0.00 34.21 2.15
35 36 3.620374 ACGCTCAAGAGTTTGCATCATAG 59.380 43.478 0.00 0.00 34.21 2.23
50 51 0.103572 CATAGCCCATGTTGCAAGCC 59.896 55.000 0.00 0.00 0.00 4.35
51 52 1.044790 ATAGCCCATGTTGCAAGCCC 61.045 55.000 0.00 0.00 0.00 5.19
52 53 4.440127 GCCCATGTTGCAAGCCCG 62.440 66.667 0.00 0.00 0.00 6.13
54 55 2.573083 CCCATGTTGCAAGCCCGTT 61.573 57.895 0.00 0.00 0.00 4.44
59 60 3.222855 TTGCAAGCCCGTTGGGTG 61.223 61.111 3.40 0.00 46.51 4.61
64 65 2.147387 AAGCCCGTTGGGTGAGTCT 61.147 57.895 3.40 0.00 46.51 3.24
65 66 2.358737 GCCCGTTGGGTGAGTCTG 60.359 66.667 3.40 0.00 46.51 3.51
72 74 4.394712 GGGTGAGTCTGCGTGGGG 62.395 72.222 0.00 0.00 0.00 4.96
74 76 4.008933 GTGAGTCTGCGTGGGGCT 62.009 66.667 0.00 0.00 44.05 5.19
95 97 3.766691 GCGCGTGGGAGGGAGTTA 61.767 66.667 8.43 0.00 0.00 2.24
96 98 2.183555 CGCGTGGGAGGGAGTTAC 59.816 66.667 0.00 0.00 0.00 2.50
98 100 2.183555 CGTGGGAGGGAGTTACGC 59.816 66.667 0.00 0.00 0.00 4.42
99 101 2.582978 GTGGGAGGGAGTTACGCC 59.417 66.667 0.00 0.00 0.00 5.68
101 103 3.073101 GGGAGGGAGTTACGCCGT 61.073 66.667 0.00 0.00 0.00 5.68
103 105 2.345760 GGAGGGAGTTACGCCGTGA 61.346 63.158 4.87 0.00 0.00 4.35
107 119 1.445582 GGAGTTACGCCGTGAGTGG 60.446 63.158 0.00 0.00 0.00 4.00
109 121 0.731855 GAGTTACGCCGTGAGTGGTC 60.732 60.000 0.00 0.00 0.00 4.02
117 129 3.036026 CGTGAGTGGTCGGATCAAG 57.964 57.895 0.00 0.00 0.00 3.02
122 134 4.467084 TGGTCGGATCAAGCGGCC 62.467 66.667 6.55 6.55 0.00 6.13
149 161 0.846401 CGATCAACGCCGTGTATCAG 59.154 55.000 11.24 2.77 34.51 2.90
150 162 1.209128 GATCAACGCCGTGTATCAGG 58.791 55.000 0.00 0.00 0.00 3.86
151 163 0.179084 ATCAACGCCGTGTATCAGGG 60.179 55.000 0.00 4.40 41.71 4.45
152 164 1.079405 CAACGCCGTGTATCAGGGT 60.079 57.895 0.00 0.00 40.97 4.34
155 167 4.835927 GCCGTGTATCAGGGTGAG 57.164 61.111 9.63 0.00 40.97 3.51
158 170 0.976073 CCGTGTATCAGGGTGAGGGT 60.976 60.000 0.99 0.00 35.03 4.34
162 181 2.039879 GTGTATCAGGGTGAGGGTGTTT 59.960 50.000 0.00 0.00 0.00 2.83
184 203 5.694674 TTCAAGAAAACAAAACGATGCAC 57.305 34.783 0.00 0.00 0.00 4.57
255 274 2.480853 TACGCCGTGCAGTTGTCGAT 62.481 55.000 0.00 0.00 0.00 3.59
256 275 2.778679 GCCGTGCAGTTGTCGATC 59.221 61.111 0.00 0.00 0.00 3.69
257 276 3.071459 GCCGTGCAGTTGTCGATCG 62.071 63.158 9.36 9.36 0.00 3.69
258 277 2.391821 CGTGCAGTTGTCGATCGC 59.608 61.111 11.09 6.41 0.00 4.58
282 301 4.796231 CGCCTCTGGAACGGACCG 62.796 72.222 13.61 13.61 39.80 4.79
283 302 4.452733 GCCTCTGGAACGGACCGG 62.453 72.222 20.00 0.00 39.80 5.28
284 303 3.771160 CCTCTGGAACGGACCGGG 61.771 72.222 20.00 3.57 39.80 5.73
285 304 2.678934 CTCTGGAACGGACCGGGA 60.679 66.667 20.00 7.15 39.80 5.14
391 417 1.577328 CGTGGCAGCGACAAATTCCT 61.577 55.000 8.41 0.00 0.00 3.36
392 418 0.169009 GTGGCAGCGACAAATTCCTC 59.831 55.000 2.08 0.00 0.00 3.71
393 419 0.960364 TGGCAGCGACAAATTCCTCC 60.960 55.000 0.00 0.00 0.00 4.30
396 422 1.474077 GCAGCGACAAATTCCTCCAAT 59.526 47.619 0.00 0.00 0.00 3.16
399 425 3.941483 CAGCGACAAATTCCTCCAATACT 59.059 43.478 0.00 0.00 0.00 2.12
414 444 3.315191 CCAATACTCCCGCACCTTATTTG 59.685 47.826 0.00 0.00 0.00 2.32
1143 1173 2.349817 GGTCGTCAAACACTTCATGCAG 60.350 50.000 0.00 0.00 0.00 4.41
1364 1401 1.077501 AAGCGCTGTATGCCATGGT 60.078 52.632 12.58 0.00 38.78 3.55
1398 1435 3.755378 CCTTTCAGTTCTGCAAGCAGTAT 59.245 43.478 20.34 6.32 43.96 2.12
1401 1438 6.402983 CCTTTCAGTTCTGCAAGCAGTATAAG 60.403 42.308 20.34 14.74 43.96 1.73
1420 1457 0.100861 GAGATCCACCGAGTTCCGTC 59.899 60.000 0.00 0.00 36.31 4.79
1435 1472 1.807165 CGTCGGCTGTGTGAGATGG 60.807 63.158 0.00 0.00 0.00 3.51
1510 1547 2.583520 CCCCTGAGAGCTGTCAGC 59.416 66.667 30.45 17.48 42.40 4.26
1587 1624 1.227292 GGAAGCCTTCCGATCCGTC 60.227 63.158 7.93 0.00 40.59 4.79
1683 1720 4.285020 AGCTGACTGAGATATTCTGGACA 58.715 43.478 0.00 0.00 0.00 4.02
1704 1741 6.403855 GGACATCTGAGAGTCACTACTTGTAC 60.404 46.154 13.00 0.00 35.56 2.90
1742 1779 1.534595 GGAGCTCTTCAACTTGCACAG 59.465 52.381 14.64 0.00 0.00 3.66
2079 2118 1.174712 TTTCTGAGTTGGCTGCCAGC 61.175 55.000 25.77 25.77 41.46 4.85
2103 2142 1.270550 GTGGTTTCATGTGCTTCCCAG 59.729 52.381 0.00 0.00 0.00 4.45
2197 2236 4.253685 TCTGCTTTCCAAGATTTCTACCG 58.746 43.478 0.00 0.00 0.00 4.02
2470 2551 6.848631 TCTCTAGAATGATCCCCTTCTTTGAT 59.151 38.462 7.38 0.00 33.83 2.57
2746 3599 9.410556 AGGAAATCATTCATTGAAAAACGTAAG 57.589 29.630 2.68 0.00 38.03 2.34
2985 3915 6.558771 TGTATCGCGTTACCTAGCTTATAA 57.441 37.500 21.23 0.00 0.00 0.98
3012 3942 1.195115 CGTCAGGGGATGGAGAAGAA 58.805 55.000 0.00 0.00 0.00 2.52
3119 4049 1.870016 CGCGTCGAGGAAGAGAAGC 60.870 63.158 9.75 0.00 38.24 3.86
3217 4147 1.205893 AGGCTCTCTCGATTGTTGGAC 59.794 52.381 0.00 0.00 0.00 4.02
3303 4233 3.498614 AGAGAGGGAGGAAAGGATCAA 57.501 47.619 0.00 0.00 0.00 2.57
3304 4234 3.111484 AGAGAGGGAGGAAAGGATCAAC 58.889 50.000 0.00 0.00 0.00 3.18
3324 4254 4.336889 ACCAGTTGATCTCGTCAAGAAA 57.663 40.909 0.00 0.00 46.99 2.52
3325 4255 4.703897 ACCAGTTGATCTCGTCAAGAAAA 58.296 39.130 0.00 0.00 46.99 2.29
3343 4273 1.745320 AACGTGAACGGGAGACTGCT 61.745 55.000 7.86 0.00 44.95 4.24
3378 4308 5.859114 CGTATTATCTGAAGATGGAGGAACG 59.141 44.000 2.99 1.87 36.05 3.95
3394 4324 4.794648 CGGCGGATCCAAAGGGCA 62.795 66.667 13.41 0.00 34.01 5.36
3524 4457 0.326264 GGAAGAAGCTCCTCCTGCAA 59.674 55.000 0.00 0.00 32.21 4.08
3535 4468 2.305635 TCCTCCTGCAAGCAGTAATCAA 59.694 45.455 19.60 0.00 42.15 2.57
3561 4494 1.384989 CGTCGTAGATCAGGGCCACT 61.385 60.000 6.18 1.85 40.67 4.00
3618 4551 2.282674 CTGCCTGCTGCCCTGAAA 60.283 61.111 0.00 0.00 40.16 2.69
3619 4552 2.282674 TGCCTGCTGCCCTGAAAG 60.283 61.111 0.00 0.00 40.16 2.62
3637 4570 6.317789 TGAAAGTTTAGAAGCATGGACTTG 57.682 37.500 0.00 0.00 0.00 3.16
3650 4587 2.821437 TGGACTTGTTCTAGCTAGGCT 58.179 47.619 20.58 0.00 43.41 4.58
3651 4588 2.761208 TGGACTTGTTCTAGCTAGGCTC 59.239 50.000 20.58 11.37 40.44 4.70
3652 4589 3.028130 GGACTTGTTCTAGCTAGGCTCT 58.972 50.000 20.58 0.00 40.44 4.09
3687 4627 3.438781 TGCACCATTAATTTCGAGGTCAC 59.561 43.478 0.00 0.00 0.00 3.67
3710 4652 6.019075 CACGTTTGATCTTTTGAGTCACACTA 60.019 38.462 0.00 0.00 0.00 2.74
3719 4669 7.952671 TCTTTTGAGTCACACTACTTCATACT 58.047 34.615 0.00 0.00 0.00 2.12
3720 4670 9.074576 TCTTTTGAGTCACACTACTTCATACTA 57.925 33.333 0.00 0.00 0.00 1.82
3721 4671 9.130312 CTTTTGAGTCACACTACTTCATACTAC 57.870 37.037 0.00 0.00 0.00 2.73
3722 4672 7.997773 TTGAGTCACACTACTTCATACTACT 57.002 36.000 0.00 0.00 0.00 2.57
3723 4673 7.997773 TGAGTCACACTACTTCATACTACTT 57.002 36.000 0.00 0.00 0.00 2.24
3724 4674 9.511272 TTGAGTCACACTACTTCATACTACTTA 57.489 33.333 0.00 0.00 0.00 2.24
3725 4675 8.944029 TGAGTCACACTACTTCATACTACTTAC 58.056 37.037 0.00 0.00 0.00 2.34
3778 4746 6.214191 TGTGAGTAAAACCAAAGATTTGCA 57.786 33.333 0.00 0.00 36.86 4.08
3824 4794 5.180304 TGGAGATTCGAGATATCTGAGTTCG 59.820 44.000 10.74 7.46 32.64 3.95
4284 5264 1.003262 TAGTTTGTACGTGGACGCGC 61.003 55.000 5.73 0.00 44.43 6.86
4293 5273 1.804326 GTGGACGCGCGTGTATCTT 60.804 57.895 42.90 14.68 0.00 2.40
4373 5353 3.467803 GTCTGTGCCAACAAGACTTAGT 58.532 45.455 0.00 0.00 35.37 2.24
4374 5354 3.877508 GTCTGTGCCAACAAGACTTAGTT 59.122 43.478 0.00 0.00 35.37 2.24
4375 5355 5.054477 GTCTGTGCCAACAAGACTTAGTTA 58.946 41.667 0.00 0.00 35.37 2.24
4376 5356 5.177696 GTCTGTGCCAACAAGACTTAGTTAG 59.822 44.000 0.00 0.00 35.37 2.34
4397 5377 1.139989 CTCGTCTTCACGCACAATGT 58.860 50.000 0.00 0.00 46.28 2.71
4411 5391 2.798283 CACAATGTACCAACGAACGAGT 59.202 45.455 0.14 0.00 0.00 4.18
4412 5392 3.982701 CACAATGTACCAACGAACGAGTA 59.017 43.478 0.14 0.00 0.00 2.59
4413 5393 4.089493 CACAATGTACCAACGAACGAGTAG 59.911 45.833 0.14 0.00 0.00 2.57
4414 5394 2.995466 TGTACCAACGAACGAGTAGG 57.005 50.000 0.14 0.09 0.00 3.18
4415 5395 2.503331 TGTACCAACGAACGAGTAGGA 58.497 47.619 0.14 0.00 0.00 2.94
4416 5396 2.884012 TGTACCAACGAACGAGTAGGAA 59.116 45.455 0.14 0.00 0.00 3.36
4417 5397 3.317711 TGTACCAACGAACGAGTAGGAAA 59.682 43.478 0.14 0.00 0.00 3.13
4418 5398 3.457610 ACCAACGAACGAGTAGGAAAA 57.542 42.857 0.14 0.00 0.00 2.29
4419 5399 3.387397 ACCAACGAACGAGTAGGAAAAG 58.613 45.455 0.14 0.00 0.00 2.27
4420 5400 2.735134 CCAACGAACGAGTAGGAAAAGG 59.265 50.000 0.14 0.00 0.00 3.11
4421 5401 2.735134 CAACGAACGAGTAGGAAAAGGG 59.265 50.000 0.14 0.00 0.00 3.95
4422 5402 1.274447 ACGAACGAGTAGGAAAAGGGG 59.726 52.381 0.14 0.00 0.00 4.79
4423 5403 1.735386 GAACGAGTAGGAAAAGGGGC 58.265 55.000 0.00 0.00 0.00 5.80
4424 5404 1.278413 GAACGAGTAGGAAAAGGGGCT 59.722 52.381 0.00 0.00 0.00 5.19
4425 5405 1.359168 ACGAGTAGGAAAAGGGGCTT 58.641 50.000 0.00 0.00 0.00 4.35
4426 5406 1.703513 ACGAGTAGGAAAAGGGGCTTT 59.296 47.619 0.00 0.00 34.94 3.51
4427 5407 2.107726 ACGAGTAGGAAAAGGGGCTTTT 59.892 45.455 0.00 0.00 44.92 2.27
4428 5408 3.328637 ACGAGTAGGAAAAGGGGCTTTTA 59.671 43.478 0.00 0.00 42.72 1.52
4429 5409 3.688185 CGAGTAGGAAAAGGGGCTTTTAC 59.312 47.826 0.00 0.00 42.72 2.01
4430 5410 4.015084 GAGTAGGAAAAGGGGCTTTTACC 58.985 47.826 0.00 0.00 43.22 2.85
4431 5411 2.320681 AGGAAAAGGGGCTTTTACCC 57.679 50.000 0.00 0.00 43.22 3.69
4437 5417 4.007457 GGGCTTTTACCCCGGTTC 57.993 61.111 0.00 0.00 45.00 3.62
4438 5418 1.075305 GGGCTTTTACCCCGGTTCA 59.925 57.895 0.00 0.00 45.00 3.18
4439 5419 0.323999 GGGCTTTTACCCCGGTTCAT 60.324 55.000 0.00 0.00 45.00 2.57
4440 5420 1.064537 GGGCTTTTACCCCGGTTCATA 60.065 52.381 0.00 0.00 45.00 2.15
4441 5421 2.621147 GGGCTTTTACCCCGGTTCATAA 60.621 50.000 0.00 0.00 45.00 1.90
4442 5422 3.090790 GGCTTTTACCCCGGTTCATAAA 58.909 45.455 0.00 0.00 0.00 1.40
4443 5423 3.129813 GGCTTTTACCCCGGTTCATAAAG 59.870 47.826 0.00 4.94 0.00 1.85
4444 5424 3.129813 GCTTTTACCCCGGTTCATAAAGG 59.870 47.826 0.00 1.61 0.00 3.11
4445 5425 2.423446 TTACCCCGGTTCATAAAGGC 57.577 50.000 0.00 0.00 0.00 4.35
4446 5426 0.547553 TACCCCGGTTCATAAAGGCC 59.452 55.000 0.00 0.00 0.00 5.19
4447 5427 1.212250 ACCCCGGTTCATAAAGGCCT 61.212 55.000 0.00 0.00 0.00 5.19
4448 5428 0.033503 CCCCGGTTCATAAAGGCCTT 60.034 55.000 13.78 13.78 0.00 4.35
4449 5429 1.618616 CCCCGGTTCATAAAGGCCTTT 60.619 52.381 32.37 32.37 36.63 3.11
4450 5430 2.357361 CCCCGGTTCATAAAGGCCTTTA 60.357 50.000 34.29 34.29 39.12 1.85
4451 5431 2.949644 CCCGGTTCATAAAGGCCTTTAG 59.050 50.000 34.75 26.82 38.30 1.85
4452 5432 3.617284 CCGGTTCATAAAGGCCTTTAGT 58.383 45.455 34.75 22.91 38.30 2.24
4453 5433 3.626217 CCGGTTCATAAAGGCCTTTAGTC 59.374 47.826 34.75 24.57 38.30 2.59
4454 5434 3.626217 CGGTTCATAAAGGCCTTTAGTCC 59.374 47.826 34.75 29.03 38.30 3.85
4455 5435 3.952323 GGTTCATAAAGGCCTTTAGTCCC 59.048 47.826 34.75 27.15 38.30 4.46
4456 5436 3.553828 TCATAAAGGCCTTTAGTCCCG 57.446 47.619 34.75 22.46 38.30 5.14
4457 5437 2.171870 TCATAAAGGCCTTTAGTCCCGG 59.828 50.000 34.75 21.68 38.30 5.73
4458 5438 1.660242 TAAAGGCCTTTAGTCCCGGT 58.340 50.000 30.16 9.65 34.23 5.28
4459 5439 0.775542 AAAGGCCTTTAGTCCCGGTT 59.224 50.000 29.47 0.30 0.00 4.44
4460 5440 0.327259 AAGGCCTTTAGTCCCGGTTC 59.673 55.000 13.78 0.00 0.00 3.62
4461 5441 0.546988 AGGCCTTTAGTCCCGGTTCT 60.547 55.000 0.00 0.15 0.00 3.01
4462 5442 0.392595 GGCCTTTAGTCCCGGTTCTG 60.393 60.000 0.00 0.00 0.00 3.02
4463 5443 0.392595 GCCTTTAGTCCCGGTTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
4464 5444 1.272807 CCTTTAGTCCCGGTTCTGGA 58.727 55.000 0.00 0.00 0.00 3.86
4465 5445 1.626825 CCTTTAGTCCCGGTTCTGGAA 59.373 52.381 0.00 0.00 32.59 3.53
4466 5446 2.614734 CCTTTAGTCCCGGTTCTGGAAC 60.615 54.545 0.00 5.02 40.45 3.62
4478 5458 3.586892 GTTCTGGAACCGAGACTAAAGG 58.413 50.000 2.35 0.00 35.36 3.11
4479 5459 2.176889 TCTGGAACCGAGACTAAAGGG 58.823 52.381 0.00 0.00 0.00 3.95
4480 5460 1.900486 CTGGAACCGAGACTAAAGGGT 59.100 52.381 0.00 0.00 0.00 4.34
4481 5461 1.897802 TGGAACCGAGACTAAAGGGTC 59.102 52.381 1.59 1.59 40.88 4.46
4482 5462 1.135170 GGAACCGAGACTAAAGGGTCG 60.135 57.143 3.85 0.00 42.46 4.79
4483 5463 1.543358 GAACCGAGACTAAAGGGTCGT 59.457 52.381 0.00 0.00 40.76 4.34
4484 5464 1.625511 ACCGAGACTAAAGGGTCGTT 58.374 50.000 0.00 0.00 40.76 3.85
4485 5465 2.795329 ACCGAGACTAAAGGGTCGTTA 58.205 47.619 0.00 0.00 40.76 3.18
4486 5466 2.489722 ACCGAGACTAAAGGGTCGTTAC 59.510 50.000 0.00 0.00 40.76 2.50
4487 5467 2.751806 CCGAGACTAAAGGGTCGTTACT 59.248 50.000 0.00 0.00 40.76 2.24
4488 5468 3.941483 CCGAGACTAAAGGGTCGTTACTA 59.059 47.826 0.00 0.00 40.76 1.82
4489 5469 4.396166 CCGAGACTAAAGGGTCGTTACTAA 59.604 45.833 0.00 0.00 40.76 2.24
4490 5470 5.067023 CCGAGACTAAAGGGTCGTTACTAAT 59.933 44.000 0.00 0.00 40.76 1.73
4491 5471 6.260936 CCGAGACTAAAGGGTCGTTACTAATA 59.739 42.308 0.00 0.00 40.76 0.98
4492 5472 7.128976 CGAGACTAAAGGGTCGTTACTAATAC 58.871 42.308 0.00 0.00 40.76 1.89
4493 5473 7.340122 AGACTAAAGGGTCGTTACTAATACC 57.660 40.000 0.00 0.00 40.76 2.73
4499 5479 5.697473 GGGTCGTTACTAATACCCTAGTC 57.303 47.826 12.24 0.00 46.80 2.59
4500 5480 4.520874 GGGTCGTTACTAATACCCTAGTCC 59.479 50.000 12.24 0.00 46.80 3.85
4501 5481 5.380900 GGTCGTTACTAATACCCTAGTCCT 58.619 45.833 0.00 0.00 34.03 3.85
4502 5482 5.830457 GGTCGTTACTAATACCCTAGTCCTT 59.170 44.000 0.00 0.00 34.03 3.36
4503 5483 6.322456 GGTCGTTACTAATACCCTAGTCCTTT 59.678 42.308 0.00 0.00 34.03 3.11
4504 5484 7.502561 GGTCGTTACTAATACCCTAGTCCTTTA 59.497 40.741 0.00 0.00 34.03 1.85
4505 5485 8.563732 GTCGTTACTAATACCCTAGTCCTTTAG 58.436 40.741 0.00 0.00 34.03 1.85
4506 5486 8.275040 TCGTTACTAATACCCTAGTCCTTTAGT 58.725 37.037 9.15 9.15 34.03 2.24
4507 5487 8.563732 CGTTACTAATACCCTAGTCCTTTAGTC 58.436 40.741 8.03 0.00 34.03 2.59
4508 5488 8.855110 GTTACTAATACCCTAGTCCTTTAGTCC 58.145 40.741 8.03 0.95 34.03 3.85
4509 5489 6.380414 ACTAATACCCTAGTCCTTTAGTCCC 58.620 44.000 0.00 0.00 28.09 4.46
4510 5490 2.156102 ACCCTAGTCCTTTAGTCCCG 57.844 55.000 0.00 0.00 0.00 5.14
4511 5491 1.342774 ACCCTAGTCCTTTAGTCCCGG 60.343 57.143 0.00 0.00 0.00 5.73
4512 5492 1.342774 CCCTAGTCCTTTAGTCCCGGT 60.343 57.143 0.00 0.00 0.00 5.28
4513 5493 2.464782 CCTAGTCCTTTAGTCCCGGTT 58.535 52.381 0.00 0.00 0.00 4.44
4514 5494 2.429971 CCTAGTCCTTTAGTCCCGGTTC 59.570 54.545 0.00 0.00 0.00 3.62
4515 5495 2.322339 AGTCCTTTAGTCCCGGTTCT 57.678 50.000 0.00 0.15 0.00 3.01
4516 5496 2.617658 AGTCCTTTAGTCCCGGTTCTT 58.382 47.619 0.00 0.00 0.00 2.52
4517 5497 3.782992 AGTCCTTTAGTCCCGGTTCTTA 58.217 45.455 0.00 0.00 0.00 2.10
4518 5498 4.359996 AGTCCTTTAGTCCCGGTTCTTAT 58.640 43.478 0.00 0.00 0.00 1.73
4519 5499 5.522641 AGTCCTTTAGTCCCGGTTCTTATA 58.477 41.667 0.00 0.00 0.00 0.98
4520 5500 5.362143 AGTCCTTTAGTCCCGGTTCTTATAC 59.638 44.000 0.00 0.00 0.00 1.47
4521 5501 4.339247 TCCTTTAGTCCCGGTTCTTATACG 59.661 45.833 0.00 0.00 0.00 3.06
4522 5502 4.339247 CCTTTAGTCCCGGTTCTTATACGA 59.661 45.833 0.00 0.00 0.00 3.43
4523 5503 5.163519 CCTTTAGTCCCGGTTCTTATACGAA 60.164 44.000 0.00 0.00 0.00 3.85
4524 5504 3.790152 AGTCCCGGTTCTTATACGAAC 57.210 47.619 12.48 12.48 41.91 3.95
4531 5511 3.790152 GTTCTTATACGAACCGGGACT 57.210 47.619 6.32 0.00 37.82 3.85
4532 5512 4.900635 GTTCTTATACGAACCGGGACTA 57.099 45.455 6.32 0.00 37.82 2.59
4533 5513 5.248870 GTTCTTATACGAACCGGGACTAA 57.751 43.478 6.32 0.00 37.82 2.24
4534 5514 5.650543 GTTCTTATACGAACCGGGACTAAA 58.349 41.667 6.32 0.00 37.82 1.85
4535 5515 5.505173 TCTTATACGAACCGGGACTAAAG 57.495 43.478 6.32 0.54 0.00 1.85
4536 5516 4.339247 TCTTATACGAACCGGGACTAAAGG 59.661 45.833 6.32 0.00 0.00 3.11
4537 5517 0.532115 TACGAACCGGGACTAAAGGC 59.468 55.000 6.32 0.00 0.00 4.35
4538 5518 1.449070 CGAACCGGGACTAAAGGCC 60.449 63.158 6.32 0.00 0.00 5.19
4539 5519 1.449070 GAACCGGGACTAAAGGCCG 60.449 63.158 6.32 0.00 0.00 6.13
4540 5520 2.176314 GAACCGGGACTAAAGGCCGT 62.176 60.000 6.32 0.00 0.00 5.68
4541 5521 2.176314 AACCGGGACTAAAGGCCGTC 62.176 60.000 6.32 0.00 0.00 4.79
4544 5524 4.611961 GGACTAAAGGCCGTCCAC 57.388 61.111 19.41 2.12 46.98 4.02
4545 5525 1.447314 GGACTAAAGGCCGTCCACG 60.447 63.158 19.41 1.11 46.98 4.94
4546 5526 1.291272 GACTAAAGGCCGTCCACGT 59.709 57.895 0.00 0.00 37.74 4.49
4547 5527 1.005394 ACTAAAGGCCGTCCACGTG 60.005 57.895 9.08 9.08 37.74 4.49
4548 5528 1.740296 CTAAAGGCCGTCCACGTGG 60.740 63.158 29.26 29.26 37.74 4.94
4584 5564 2.361737 GCAGGAGGGCCTTTGGTC 60.362 66.667 7.89 0.00 43.90 4.02
4590 5570 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
4591 5571 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
4592 5572 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
4593 5573 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
4594 5574 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
4595 5575 2.519780 TTTGGTCCCGGTTGGTGC 60.520 61.111 0.00 0.00 34.77 5.01
4596 5576 4.589675 TTGGTCCCGGTTGGTGCC 62.590 66.667 0.00 0.00 34.77 5.01
4611 5591 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
4612 5592 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
4613 5593 1.686416 CCACCAACCGGGACCAATA 59.314 57.895 6.32 0.00 41.15 1.90
4614 5594 0.393808 CCACCAACCGGGACCAATAG 60.394 60.000 6.32 0.00 41.15 1.73
4615 5595 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
4616 5596 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
4617 5597 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
4618 5598 0.748005 CAACCGGGACCAATAGGCAG 60.748 60.000 6.32 0.00 39.06 4.85
4619 5599 1.921869 AACCGGGACCAATAGGCAGG 61.922 60.000 6.32 0.00 39.06 4.85
4620 5600 2.510906 CGGGACCAATAGGCAGGG 59.489 66.667 0.00 0.00 39.06 4.45
4621 5601 2.375345 CGGGACCAATAGGCAGGGT 61.375 63.158 0.00 0.00 39.06 4.34
4622 5602 1.921869 CGGGACCAATAGGCAGGGTT 61.922 60.000 0.00 0.00 39.06 4.11
4623 5603 0.335019 GGGACCAATAGGCAGGGTTT 59.665 55.000 0.00 0.00 39.06 3.27
4624 5604 1.273041 GGGACCAATAGGCAGGGTTTT 60.273 52.381 0.00 0.00 39.06 2.43
4625 5605 2.536066 GGACCAATAGGCAGGGTTTTT 58.464 47.619 0.00 0.00 39.06 1.94
4643 5623 2.350057 TTTTGTCCCGGTTGATGTCA 57.650 45.000 0.00 0.00 0.00 3.58
4644 5624 2.577606 TTTGTCCCGGTTGATGTCAT 57.422 45.000 0.00 0.00 0.00 3.06
4645 5625 2.107950 TTGTCCCGGTTGATGTCATC 57.892 50.000 5.83 5.83 0.00 2.92
4646 5626 0.980423 TGTCCCGGTTGATGTCATCA 59.020 50.000 11.62 11.62 37.55 3.07
4647 5627 1.349357 TGTCCCGGTTGATGTCATCAA 59.651 47.619 21.80 21.80 46.30 2.57
4654 5634 2.107950 TTGATGTCATCAACCGGGAC 57.892 50.000 21.80 3.26 43.84 4.46
4655 5635 0.251916 TGATGTCATCAACCGGGACC 59.748 55.000 13.25 0.00 36.11 4.46
4656 5636 0.251916 GATGTCATCAACCGGGACCA 59.748 55.000 6.32 0.00 0.00 4.02
4657 5637 0.695924 ATGTCATCAACCGGGACCAA 59.304 50.000 6.32 0.00 0.00 3.67
4658 5638 0.695924 TGTCATCAACCGGGACCAAT 59.304 50.000 6.32 0.00 0.00 3.16
4659 5639 1.909986 TGTCATCAACCGGGACCAATA 59.090 47.619 6.32 0.00 0.00 1.90
4660 5640 2.093181 TGTCATCAACCGGGACCAATAG 60.093 50.000 6.32 0.00 0.00 1.73
4661 5641 1.488812 TCATCAACCGGGACCAATAGG 59.511 52.381 6.32 0.00 42.21 2.57
4662 5642 0.182775 ATCAACCGGGACCAATAGGC 59.817 55.000 6.32 0.00 39.06 3.93
4663 5643 1.202099 TCAACCGGGACCAATAGGCA 61.202 55.000 6.32 0.00 39.06 4.75
4664 5644 0.106719 CAACCGGGACCAATAGGCAT 60.107 55.000 6.32 0.00 39.06 4.40
4665 5645 0.182775 AACCGGGACCAATAGGCATC 59.817 55.000 6.32 0.00 39.06 3.91
4666 5646 1.073199 CCGGGACCAATAGGCATCC 59.927 63.158 0.00 0.00 39.06 3.51
4667 5647 1.705002 CCGGGACCAATAGGCATCCA 61.705 60.000 0.00 0.00 39.06 3.41
4668 5648 0.535102 CGGGACCAATAGGCATCCAC 60.535 60.000 0.00 0.00 39.06 4.02
4669 5649 0.535102 GGGACCAATAGGCATCCACG 60.535 60.000 0.00 0.00 39.06 4.94
4670 5650 1.166531 GGACCAATAGGCATCCACGC 61.167 60.000 0.00 0.00 39.06 5.34
4671 5651 1.498865 GACCAATAGGCATCCACGCG 61.499 60.000 3.53 3.53 39.06 6.01
4672 5652 1.523711 CCAATAGGCATCCACGCGT 60.524 57.895 5.58 5.58 0.00 6.01
4673 5653 1.498865 CCAATAGGCATCCACGCGTC 61.499 60.000 9.86 0.00 0.00 5.19
4674 5654 0.809636 CAATAGGCATCCACGCGTCA 60.810 55.000 9.86 0.00 0.00 4.35
4675 5655 0.530650 AATAGGCATCCACGCGTCAG 60.531 55.000 9.86 3.57 0.00 3.51
4676 5656 2.978452 ATAGGCATCCACGCGTCAGC 62.978 60.000 9.86 11.14 40.74 4.26
4678 5658 3.857854 GCATCCACGCGTCAGCAG 61.858 66.667 9.86 0.00 45.49 4.24
4679 5659 3.857854 CATCCACGCGTCAGCAGC 61.858 66.667 9.86 0.00 45.49 5.25
4680 5660 4.074526 ATCCACGCGTCAGCAGCT 62.075 61.111 9.86 0.00 45.49 4.24
4699 5679 4.081050 GCAGGAGCCGAGGTTTTT 57.919 55.556 0.00 0.00 33.58 1.94
4700 5680 1.581447 GCAGGAGCCGAGGTTTTTG 59.419 57.895 0.00 0.00 33.58 2.44
4701 5681 1.172812 GCAGGAGCCGAGGTTTTTGT 61.173 55.000 0.00 0.00 33.58 2.83
4702 5682 1.318576 CAGGAGCCGAGGTTTTTGTT 58.681 50.000 0.00 0.00 0.00 2.83
4703 5683 1.681264 CAGGAGCCGAGGTTTTTGTTT 59.319 47.619 0.00 0.00 0.00 2.83
4704 5684 2.100749 CAGGAGCCGAGGTTTTTGTTTT 59.899 45.455 0.00 0.00 0.00 2.43
4705 5685 2.764010 AGGAGCCGAGGTTTTTGTTTTT 59.236 40.909 0.00 0.00 0.00 1.94
4726 5706 5.890752 TTTTTAAAAGGGGTGGTTTAGGG 57.109 39.130 0.14 0.00 0.00 3.53
4727 5707 3.546429 TTAAAAGGGGTGGTTTAGGGG 57.454 47.619 0.00 0.00 0.00 4.79
4728 5708 1.247260 AAAAGGGGTGGTTTAGGGGT 58.753 50.000 0.00 0.00 0.00 4.95
4729 5709 1.247260 AAAGGGGTGGTTTAGGGGTT 58.753 50.000 0.00 0.00 0.00 4.11
4730 5710 1.247260 AAGGGGTGGTTTAGGGGTTT 58.753 50.000 0.00 0.00 0.00 3.27
4731 5711 1.247260 AGGGGTGGTTTAGGGGTTTT 58.753 50.000 0.00 0.00 0.00 2.43
4732 5712 1.132977 AGGGGTGGTTTAGGGGTTTTG 60.133 52.381 0.00 0.00 0.00 2.44
4733 5713 1.344065 GGGTGGTTTAGGGGTTTTGG 58.656 55.000 0.00 0.00 0.00 3.28
4734 5714 1.344065 GGTGGTTTAGGGGTTTTGGG 58.656 55.000 0.00 0.00 0.00 4.12
4735 5715 1.344065 GTGGTTTAGGGGTTTTGGGG 58.656 55.000 0.00 0.00 0.00 4.96
4736 5716 0.191314 TGGTTTAGGGGTTTTGGGGG 59.809 55.000 0.00 0.00 0.00 5.40
4757 5737 7.907841 GGGGGTTAATTTAGGTGTTTCATAT 57.092 36.000 0.00 0.00 0.00 1.78
4758 5738 8.999905 GGGGGTTAATTTAGGTGTTTCATATA 57.000 34.615 0.00 0.00 0.00 0.86
4759 5739 9.596308 GGGGGTTAATTTAGGTGTTTCATATAT 57.404 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.079503 CAAACTCTTGAGCGTAGGGC 58.920 55.000 0.00 0.00 44.05 5.19
9 10 1.079503 GCAAACTCTTGAGCGTAGGG 58.920 55.000 0.00 0.00 34.14 3.53
10 11 1.795768 TGCAAACTCTTGAGCGTAGG 58.204 50.000 0.00 0.00 34.14 3.18
11 12 2.995939 TGATGCAAACTCTTGAGCGTAG 59.004 45.455 0.00 0.00 34.14 3.51
12 13 3.038788 TGATGCAAACTCTTGAGCGTA 57.961 42.857 0.00 0.00 34.14 4.42
13 14 1.882912 TGATGCAAACTCTTGAGCGT 58.117 45.000 0.00 0.00 34.14 5.07
14 15 3.545624 GCTATGATGCAAACTCTTGAGCG 60.546 47.826 0.00 0.00 34.14 5.03
15 16 3.243002 GGCTATGATGCAAACTCTTGAGC 60.243 47.826 0.00 0.00 34.14 4.26
16 17 3.314635 GGGCTATGATGCAAACTCTTGAG 59.685 47.826 0.00 0.00 34.14 3.02
17 18 3.282021 GGGCTATGATGCAAACTCTTGA 58.718 45.455 0.00 0.00 34.14 3.02
18 19 3.018856 TGGGCTATGATGCAAACTCTTG 58.981 45.455 0.00 0.00 35.49 3.02
19 20 3.370840 TGGGCTATGATGCAAACTCTT 57.629 42.857 0.00 0.00 34.04 2.85
20 21 3.220110 CATGGGCTATGATGCAAACTCT 58.780 45.455 4.63 0.00 39.21 3.24
21 22 2.954318 ACATGGGCTATGATGCAAACTC 59.046 45.455 18.36 0.00 39.21 3.01
30 31 1.105457 GCTTGCAACATGGGCTATGA 58.895 50.000 18.36 0.00 39.21 2.15
34 35 2.999063 GGGCTTGCAACATGGGCT 60.999 61.111 12.08 0.00 0.00 5.19
35 36 4.440127 CGGGCTTGCAACATGGGC 62.440 66.667 0.00 0.00 0.00 5.36
50 51 2.738521 CGCAGACTCACCCAACGG 60.739 66.667 0.00 0.00 0.00 4.44
51 52 2.029073 ACGCAGACTCACCCAACG 59.971 61.111 0.00 0.00 0.00 4.10
52 53 1.961277 CCACGCAGACTCACCCAAC 60.961 63.158 0.00 0.00 0.00 3.77
54 55 3.625897 CCCACGCAGACTCACCCA 61.626 66.667 0.00 0.00 0.00 4.51
59 60 2.743928 CAAGCCCCACGCAGACTC 60.744 66.667 0.00 0.00 41.38 3.36
81 83 2.183555 GCGTAACTCCCTCCCACG 59.816 66.667 0.00 0.00 35.78 4.94
89 91 1.445582 CCACTCACGGCGTAACTCC 60.446 63.158 14.22 0.00 0.00 3.85
99 101 1.078759 GCTTGATCCGACCACTCACG 61.079 60.000 0.00 0.00 0.00 4.35
101 103 1.215382 CGCTTGATCCGACCACTCA 59.785 57.895 0.00 0.00 0.00 3.41
103 105 2.579201 CCGCTTGATCCGACCACT 59.421 61.111 0.00 0.00 0.00 4.00
138 150 1.144057 CCTCACCCTGATACACGGC 59.856 63.158 0.00 0.00 0.00 5.68
139 151 0.976073 ACCCTCACCCTGATACACGG 60.976 60.000 0.00 0.00 0.00 4.94
140 152 0.175760 CACCCTCACCCTGATACACG 59.824 60.000 0.00 0.00 0.00 4.49
145 157 1.780309 TGAAAACACCCTCACCCTGAT 59.220 47.619 0.00 0.00 0.00 2.90
147 159 1.956477 CTTGAAAACACCCTCACCCTG 59.044 52.381 0.00 0.00 0.00 4.45
149 161 2.358322 TCTTGAAAACACCCTCACCC 57.642 50.000 0.00 0.00 0.00 4.61
150 162 4.081917 TGTTTTCTTGAAAACACCCTCACC 60.082 41.667 27.49 8.28 44.80 4.02
151 163 5.066968 TGTTTTCTTGAAAACACCCTCAC 57.933 39.130 27.49 9.41 44.80 3.51
162 181 4.564769 GGTGCATCGTTTTGTTTTCTTGAA 59.435 37.500 0.00 0.00 0.00 2.69
172 191 2.507339 AGTTTGGGTGCATCGTTTTG 57.493 45.000 0.00 0.00 0.00 2.44
279 298 1.836802 GTGTCTCTTCTAGTCCCGGT 58.163 55.000 0.00 0.00 0.00 5.28
280 299 0.733729 CGTGTCTCTTCTAGTCCCGG 59.266 60.000 0.00 0.00 0.00 5.73
281 300 1.397692 GTCGTGTCTCTTCTAGTCCCG 59.602 57.143 0.00 0.00 0.00 5.14
282 301 1.397692 CGTCGTGTCTCTTCTAGTCCC 59.602 57.143 0.00 0.00 0.00 4.46
283 302 1.202054 GCGTCGTGTCTCTTCTAGTCC 60.202 57.143 0.00 0.00 0.00 3.85
284 303 1.527389 CGCGTCGTGTCTCTTCTAGTC 60.527 57.143 0.00 0.00 0.00 2.59
285 304 0.443088 CGCGTCGTGTCTCTTCTAGT 59.557 55.000 0.00 0.00 0.00 2.57
315 334 1.064296 CGTCCGATGGGAGAACGAG 59.936 63.158 0.00 0.00 44.97 4.18
348 367 1.418755 GTTCGTTTCGCGGGTGATC 59.581 57.895 6.13 0.00 41.72 2.92
391 417 1.868713 TAAGGTGCGGGAGTATTGGA 58.131 50.000 0.00 0.00 0.00 3.53
392 418 2.930826 ATAAGGTGCGGGAGTATTGG 57.069 50.000 0.00 0.00 0.00 3.16
393 419 3.945285 ACAAATAAGGTGCGGGAGTATTG 59.055 43.478 0.00 0.00 0.00 1.90
396 422 2.835764 AGACAAATAAGGTGCGGGAGTA 59.164 45.455 0.00 0.00 0.00 2.59
399 425 1.906574 AGAGACAAATAAGGTGCGGGA 59.093 47.619 0.00 0.00 0.00 5.14
414 444 2.501610 GCGATGGGGTGGAGAGAC 59.498 66.667 0.00 0.00 0.00 3.36
893 923 1.305297 ACGTGGATCAGCTCCTCCA 60.305 57.895 9.30 9.30 45.21 3.86
1364 1401 2.074230 CTGAAAGGCCTTGTGCGCAA 62.074 55.000 21.33 12.92 42.61 4.85
1398 1435 2.022195 CGGAACTCGGTGGATCTCTTA 58.978 52.381 0.00 0.00 34.75 2.10
1401 1438 0.100861 GACGGAACTCGGTGGATCTC 59.899 60.000 0.00 0.00 44.45 2.75
1420 1457 0.738762 CTGACCATCTCACACAGCCG 60.739 60.000 0.00 0.00 0.00 5.52
1435 1472 5.048504 TCAGATTTGCAAGATGGTTTCTGAC 60.049 40.000 0.00 0.00 34.89 3.51
1510 1547 1.056660 ACCCTGGTGTCAAGGTACAG 58.943 55.000 0.00 0.00 36.02 2.74
1584 1621 1.592669 GCCATGGATGTCCTCGACG 60.593 63.158 18.40 0.00 34.95 5.12
1587 1624 0.178767 TCAAGCCATGGATGTCCTCG 59.821 55.000 18.40 0.00 36.82 4.63
1683 1720 5.571285 TGGTACAAGTAGTGACTCTCAGAT 58.429 41.667 0.00 0.00 33.58 2.90
1742 1779 7.548075 TCCGAGTTAAATTCTTATTGTGACTCC 59.452 37.037 0.00 0.00 31.17 3.85
1809 1846 8.325787 TGGTCATAATATGGTGTAACAGAAAGT 58.674 33.333 0.00 0.00 39.98 2.66
2013 2051 9.100554 TGAAAAGTGAAGACGTACAAGATTTAA 57.899 29.630 0.00 0.00 0.00 1.52
2028 2066 5.163622 TGCTCTTGAAACCTGAAAAGTGAAG 60.164 40.000 0.00 0.00 0.00 3.02
2079 2118 0.667993 AAGCACATGAAACCACACCG 59.332 50.000 0.00 0.00 0.00 4.94
2103 2142 5.675538 AGGTTGTATAGATCTTGCACTTCC 58.324 41.667 0.00 4.27 0.00 3.46
2470 2551 3.926527 CGATCTTCTCCACGACATTGAAA 59.073 43.478 0.00 0.00 0.00 2.69
2746 3599 5.637006 ATATCTGACGCTCATAGTCTTCC 57.363 43.478 0.00 0.00 39.24 3.46
2985 3915 0.744414 CATCCCCTGACGCGACATTT 60.744 55.000 15.93 0.00 0.00 2.32
3133 4063 0.457035 CAGTCTCTCTCAGCTGCTCC 59.543 60.000 9.47 0.00 0.00 4.70
3217 4147 5.653769 TCTTTCCTGGAAAGCATTCTTATGG 59.346 40.000 34.18 14.84 45.86 2.74
3303 4233 4.336889 TTTCTTGACGAGATCAACTGGT 57.663 40.909 0.00 0.00 42.62 4.00
3304 4234 4.376413 CGTTTTCTTGACGAGATCAACTGG 60.376 45.833 0.00 0.00 42.62 4.00
3311 4241 3.181774 CGTTCACGTTTTCTTGACGAGAT 59.818 43.478 3.48 0.00 42.82 2.75
3313 4243 2.347292 CCGTTCACGTTTTCTTGACGAG 60.347 50.000 3.48 0.00 42.82 4.18
3316 4246 1.935199 TCCCGTTCACGTTTTCTTGAC 59.065 47.619 0.00 0.00 37.74 3.18
3324 4254 1.300697 GCAGTCTCCCGTTCACGTT 60.301 57.895 0.00 0.00 37.74 3.99
3325 4255 2.143594 GAGCAGTCTCCCGTTCACGT 62.144 60.000 0.00 0.00 37.74 4.49
3343 4273 5.823209 TCAGATAATACGTCAGTTTCCGA 57.177 39.130 0.00 0.00 0.00 4.55
3378 4308 3.140814 GTGCCCTTTGGATCCGCC 61.141 66.667 7.39 0.00 37.10 6.13
3394 4324 0.318762 GCTGTTCCTCTTCCTCACGT 59.681 55.000 0.00 0.00 0.00 4.49
3430 4363 1.153745 CCGCTGTTCCTCTTCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
3463 4396 0.318441 CACGTTGCTCCTCTTCCTCA 59.682 55.000 0.00 0.00 0.00 3.86
3524 4457 0.392998 CGCCAGGGTTGATTACTGCT 60.393 55.000 0.00 0.00 0.00 4.24
3535 4468 1.379443 TGATCTACGACGCCAGGGT 60.379 57.895 0.00 0.00 0.00 4.34
3561 4494 1.872237 CGGACGAAGAAGAGTTTGCCA 60.872 52.381 0.00 0.00 0.00 4.92
3618 4551 5.625150 AGAACAAGTCCATGCTTCTAAACT 58.375 37.500 0.00 0.00 0.00 2.66
3619 4552 5.948992 AGAACAAGTCCATGCTTCTAAAC 57.051 39.130 0.00 0.00 0.00 2.01
3637 4570 3.739830 GCAAAGGAGAGCCTAGCTAGAAC 60.740 52.174 22.70 13.38 46.28 3.01
3687 4627 5.409643 AGTGTGACTCAAAAGATCAAACG 57.590 39.130 0.00 0.00 35.98 3.60
3757 4725 6.700960 CACATGCAAATCTTTGGTTTTACTCA 59.299 34.615 4.93 0.00 38.57 3.41
3778 4746 2.560504 TCGACAGCAAAACTCACACAT 58.439 42.857 0.00 0.00 0.00 3.21
4284 5264 0.672401 ACCGTTGGCCAAGATACACG 60.672 55.000 21.21 18.49 0.00 4.49
4293 5273 0.108520 GATTAGTCGACCGTTGGCCA 60.109 55.000 13.01 0.00 0.00 5.36
4320 5300 3.922240 TGAGTAATTTCCGACGTACTTGC 59.078 43.478 0.00 0.00 0.00 4.01
4397 5377 4.549458 CTTTTCCTACTCGTTCGTTGGTA 58.451 43.478 0.00 0.00 32.63 3.25
4411 5391 3.461378 GGGTAAAAGCCCCTTTTCCTA 57.539 47.619 6.25 0.00 41.88 2.94
4412 5392 2.320681 GGGTAAAAGCCCCTTTTCCT 57.679 50.000 6.25 0.00 41.88 3.36
4421 5401 2.423446 TATGAACCGGGGTAAAAGCC 57.577 50.000 6.32 0.00 34.31 4.35
4422 5402 3.129813 CCTTTATGAACCGGGGTAAAAGC 59.870 47.826 6.32 0.00 0.00 3.51
4423 5403 3.129813 GCCTTTATGAACCGGGGTAAAAG 59.870 47.826 6.32 8.82 0.00 2.27
4424 5404 3.090790 GCCTTTATGAACCGGGGTAAAA 58.909 45.455 6.32 0.00 0.00 1.52
4425 5405 2.621147 GGCCTTTATGAACCGGGGTAAA 60.621 50.000 6.32 4.65 0.00 2.01
4426 5406 1.064537 GGCCTTTATGAACCGGGGTAA 60.065 52.381 6.32 0.00 0.00 2.85
4427 5407 0.547553 GGCCTTTATGAACCGGGGTA 59.452 55.000 6.32 0.00 0.00 3.69
4428 5408 1.212250 AGGCCTTTATGAACCGGGGT 61.212 55.000 6.32 0.00 0.00 4.95
4429 5409 0.033503 AAGGCCTTTATGAACCGGGG 60.034 55.000 13.78 0.00 0.00 5.73
4430 5410 1.847328 AAAGGCCTTTATGAACCGGG 58.153 50.000 29.47 0.00 0.00 5.73
4431 5411 3.617284 ACTAAAGGCCTTTATGAACCGG 58.383 45.455 32.89 22.67 34.86 5.28
4432 5412 3.626217 GGACTAAAGGCCTTTATGAACCG 59.374 47.826 32.89 23.29 34.86 4.44
4433 5413 3.952323 GGGACTAAAGGCCTTTATGAACC 59.048 47.826 32.89 28.31 34.86 3.62
4434 5414 3.626217 CGGGACTAAAGGCCTTTATGAAC 59.374 47.826 32.89 23.00 34.86 3.18
4435 5415 3.371166 CCGGGACTAAAGGCCTTTATGAA 60.371 47.826 32.89 16.95 34.86 2.57
4436 5416 2.171870 CCGGGACTAAAGGCCTTTATGA 59.828 50.000 32.89 17.30 34.86 2.15
4437 5417 2.092592 ACCGGGACTAAAGGCCTTTATG 60.093 50.000 32.89 26.99 34.86 1.90
4438 5418 2.202707 ACCGGGACTAAAGGCCTTTAT 58.797 47.619 32.89 23.51 34.86 1.40
4439 5419 1.660242 ACCGGGACTAAAGGCCTTTA 58.340 50.000 31.21 31.21 34.23 1.85
4440 5420 0.775542 AACCGGGACTAAAGGCCTTT 59.224 50.000 32.37 32.37 36.63 3.11
4441 5421 0.327259 GAACCGGGACTAAAGGCCTT 59.673 55.000 13.78 13.78 0.00 4.35
4442 5422 0.546988 AGAACCGGGACTAAAGGCCT 60.547 55.000 6.32 0.00 0.00 5.19
4443 5423 0.392595 CAGAACCGGGACTAAAGGCC 60.393 60.000 6.32 0.00 0.00 5.19
4444 5424 0.392595 CCAGAACCGGGACTAAAGGC 60.393 60.000 6.32 0.00 0.00 4.35
4445 5425 1.272807 TCCAGAACCGGGACTAAAGG 58.727 55.000 6.32 2.64 0.00 3.11
4446 5426 2.696506 GTTCCAGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 35.36 1.85
4447 5427 2.845363 GTTCCAGAACCGGGACTAAA 57.155 50.000 6.32 0.06 35.36 1.85
4457 5437 3.586892 CCTTTAGTCTCGGTTCCAGAAC 58.413 50.000 1.77 1.77 40.45 3.01
4458 5438 2.565834 CCCTTTAGTCTCGGTTCCAGAA 59.434 50.000 0.00 0.00 0.00 3.02
4459 5439 2.176889 CCCTTTAGTCTCGGTTCCAGA 58.823 52.381 0.00 0.00 0.00 3.86
4460 5440 1.900486 ACCCTTTAGTCTCGGTTCCAG 59.100 52.381 0.00 0.00 0.00 3.86
4461 5441 1.897802 GACCCTTTAGTCTCGGTTCCA 59.102 52.381 0.00 0.00 33.79 3.53
4462 5442 1.135170 CGACCCTTTAGTCTCGGTTCC 60.135 57.143 0.00 0.00 34.46 3.62
4463 5443 1.543358 ACGACCCTTTAGTCTCGGTTC 59.457 52.381 0.00 0.00 34.46 3.62
4464 5444 1.625511 ACGACCCTTTAGTCTCGGTT 58.374 50.000 0.00 0.00 34.46 4.44
4465 5445 1.625511 AACGACCCTTTAGTCTCGGT 58.374 50.000 0.00 0.00 34.46 4.69
4466 5446 2.751806 AGTAACGACCCTTTAGTCTCGG 59.248 50.000 0.00 0.00 34.46 4.63
4467 5447 5.551760 TTAGTAACGACCCTTTAGTCTCG 57.448 43.478 0.00 0.00 34.46 4.04
4468 5448 7.421599 GGTATTAGTAACGACCCTTTAGTCTC 58.578 42.308 4.95 0.00 34.46 3.36
4469 5449 6.322456 GGGTATTAGTAACGACCCTTTAGTCT 59.678 42.308 20.74 0.00 46.92 3.24
4470 5450 6.507900 GGGTATTAGTAACGACCCTTTAGTC 58.492 44.000 20.74 1.06 46.92 2.59
4471 5451 6.471233 GGGTATTAGTAACGACCCTTTAGT 57.529 41.667 20.74 0.00 46.92 2.24
4478 5458 5.380900 AGGACTAGGGTATTAGTAACGACC 58.619 45.833 7.12 7.12 34.13 4.79
4479 5459 6.951062 AAGGACTAGGGTATTAGTAACGAC 57.049 41.667 0.00 0.00 34.13 4.34
4480 5460 8.275040 ACTAAAGGACTAGGGTATTAGTAACGA 58.725 37.037 9.95 0.00 34.13 3.85
4481 5461 8.457238 ACTAAAGGACTAGGGTATTAGTAACG 57.543 38.462 9.95 0.00 34.13 3.18
4482 5462 8.855110 GGACTAAAGGACTAGGGTATTAGTAAC 58.145 40.741 11.06 6.37 34.13 2.50
4483 5463 8.007153 GGGACTAAAGGACTAGGGTATTAGTAA 58.993 40.741 11.06 0.00 34.13 2.24
4484 5464 7.530435 GGGACTAAAGGACTAGGGTATTAGTA 58.470 42.308 11.06 0.00 34.13 1.82
4485 5465 6.380414 GGGACTAAAGGACTAGGGTATTAGT 58.620 44.000 10.95 10.95 36.61 2.24
4486 5466 5.476254 CGGGACTAAAGGACTAGGGTATTAG 59.524 48.000 0.00 0.84 0.00 1.73
4487 5467 5.388654 CGGGACTAAAGGACTAGGGTATTA 58.611 45.833 0.00 0.00 0.00 0.98
4488 5468 4.221530 CGGGACTAAAGGACTAGGGTATT 58.778 47.826 0.00 0.00 0.00 1.89
4489 5469 3.437637 CCGGGACTAAAGGACTAGGGTAT 60.438 52.174 0.00 0.00 0.00 2.73
4490 5470 2.091665 CCGGGACTAAAGGACTAGGGTA 60.092 54.545 0.00 0.00 0.00 3.69
4491 5471 1.342774 CCGGGACTAAAGGACTAGGGT 60.343 57.143 0.00 0.00 0.00 4.34
4492 5472 1.342774 ACCGGGACTAAAGGACTAGGG 60.343 57.143 6.32 0.00 0.00 3.53
4493 5473 2.156102 ACCGGGACTAAAGGACTAGG 57.844 55.000 6.32 0.00 0.00 3.02
4494 5474 3.363627 AGAACCGGGACTAAAGGACTAG 58.636 50.000 6.32 0.00 0.00 2.57
4495 5475 3.463048 AGAACCGGGACTAAAGGACTA 57.537 47.619 6.32 0.00 0.00 2.59
4496 5476 2.322339 AGAACCGGGACTAAAGGACT 57.678 50.000 6.32 0.00 0.00 3.85
4497 5477 4.750021 ATAAGAACCGGGACTAAAGGAC 57.250 45.455 6.32 0.00 0.00 3.85
4498 5478 4.339247 CGTATAAGAACCGGGACTAAAGGA 59.661 45.833 6.32 0.00 0.00 3.36
4499 5479 4.339247 TCGTATAAGAACCGGGACTAAAGG 59.661 45.833 6.32 0.44 0.00 3.11
4500 5480 5.505173 TCGTATAAGAACCGGGACTAAAG 57.495 43.478 6.32 0.00 0.00 1.85
4501 5481 5.650543 GTTCGTATAAGAACCGGGACTAAA 58.349 41.667 17.67 0.00 43.33 1.85
4502 5482 5.248870 GTTCGTATAAGAACCGGGACTAA 57.751 43.478 17.67 0.00 43.33 2.24
4503 5483 4.900635 GTTCGTATAAGAACCGGGACTA 57.099 45.455 17.67 0.00 43.33 2.59
4504 5484 3.790152 GTTCGTATAAGAACCGGGACT 57.210 47.619 17.67 0.73 43.33 3.85
4512 5492 5.163519 CCTTTAGTCCCGGTTCGTATAAGAA 60.164 44.000 0.00 0.00 0.00 2.52
4513 5493 4.339247 CCTTTAGTCCCGGTTCGTATAAGA 59.661 45.833 0.00 0.00 0.00 2.10
4514 5494 4.614946 CCTTTAGTCCCGGTTCGTATAAG 58.385 47.826 0.00 0.00 0.00 1.73
4515 5495 3.181476 GCCTTTAGTCCCGGTTCGTATAA 60.181 47.826 0.00 0.00 0.00 0.98
4516 5496 2.362077 GCCTTTAGTCCCGGTTCGTATA 59.638 50.000 0.00 0.00 0.00 1.47
4517 5497 1.137675 GCCTTTAGTCCCGGTTCGTAT 59.862 52.381 0.00 0.00 0.00 3.06
4518 5498 0.532115 GCCTTTAGTCCCGGTTCGTA 59.468 55.000 0.00 0.00 0.00 3.43
4519 5499 1.294459 GCCTTTAGTCCCGGTTCGT 59.706 57.895 0.00 0.00 0.00 3.85
4520 5500 1.449070 GGCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
4521 5501 1.449070 CGGCCTTTAGTCCCGGTTC 60.449 63.158 0.00 0.00 38.42 3.62
4522 5502 2.176314 GACGGCCTTTAGTCCCGGTT 62.176 60.000 0.00 0.00 45.93 4.44
4523 5503 2.605601 ACGGCCTTTAGTCCCGGT 60.606 61.111 0.00 0.00 45.93 5.28
4524 5504 2.186125 GACGGCCTTTAGTCCCGG 59.814 66.667 0.00 0.00 45.93 5.73
4528 5508 1.012486 CACGTGGACGGCCTTTAGTC 61.012 60.000 9.82 0.00 44.95 2.59
4529 5509 1.005394 CACGTGGACGGCCTTTAGT 60.005 57.895 9.82 0.00 44.95 2.24
4530 5510 1.740296 CCACGTGGACGGCCTTTAG 60.740 63.158 31.31 0.00 44.95 1.85
4531 5511 2.344500 CCACGTGGACGGCCTTTA 59.656 61.111 31.31 0.00 44.95 1.85
4567 5547 2.361737 GACCAAAGGCCCTCCTGC 60.362 66.667 0.00 0.00 43.40 4.85
4568 5548 2.356667 GGACCAAAGGCCCTCCTG 59.643 66.667 0.00 0.00 43.40 3.86
4570 5550 4.426313 CGGGACCAAAGGCCCTCC 62.426 72.222 0.00 0.00 37.05 4.30
4571 5551 4.426313 CCGGGACCAAAGGCCCTC 62.426 72.222 0.00 0.00 37.05 4.30
4573 5553 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
4574 5554 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
4575 5555 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
4576 5556 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
4577 5557 2.561037 GCACCAACCGGGACCAAAG 61.561 63.158 6.32 0.00 41.15 2.77
4578 5558 2.519780 GCACCAACCGGGACCAAA 60.520 61.111 6.32 0.00 41.15 3.28
4579 5559 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
4594 5574 2.487274 TATTGGTCCCGGTTGGTGGC 62.487 60.000 0.00 0.00 34.77 5.01
4595 5575 0.393808 CTATTGGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
4596 5576 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
4597 5577 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
4598 5578 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
4599 5579 0.748005 CTGCCTATTGGTCCCGGTTG 60.748 60.000 0.00 0.00 35.27 3.77
4600 5580 1.607612 CTGCCTATTGGTCCCGGTT 59.392 57.895 0.00 0.00 35.27 4.44
4601 5581 2.375345 CCTGCCTATTGGTCCCGGT 61.375 63.158 0.00 0.00 35.27 5.28
4602 5582 2.510906 CCTGCCTATTGGTCCCGG 59.489 66.667 0.00 0.00 35.27 5.73
4603 5583 1.921869 AACCCTGCCTATTGGTCCCG 61.922 60.000 0.00 0.00 35.27 5.14
4604 5584 0.335019 AAACCCTGCCTATTGGTCCC 59.665 55.000 0.00 0.00 35.27 4.46
4605 5585 2.231716 AAAACCCTGCCTATTGGTCC 57.768 50.000 0.00 0.00 35.27 4.46
4623 5603 2.656002 TGACATCAACCGGGACAAAAA 58.344 42.857 6.32 0.00 0.00 1.94
4624 5604 2.350057 TGACATCAACCGGGACAAAA 57.650 45.000 6.32 0.00 0.00 2.44
4625 5605 2.224646 TGATGACATCAACCGGGACAAA 60.225 45.455 15.83 0.00 36.11 2.83
4626 5606 1.349357 TGATGACATCAACCGGGACAA 59.651 47.619 15.83 0.00 36.11 3.18
4627 5607 0.980423 TGATGACATCAACCGGGACA 59.020 50.000 15.83 0.00 36.11 4.02
4628 5608 2.107950 TTGATGACATCAACCGGGAC 57.892 50.000 23.89 0.00 43.84 4.46
4635 5615 1.339631 GGTCCCGGTTGATGACATCAA 60.340 52.381 23.89 23.89 46.30 2.57
4636 5616 0.251916 GGTCCCGGTTGATGACATCA 59.748 55.000 14.24 14.24 37.55 3.07
4637 5617 0.251916 TGGTCCCGGTTGATGACATC 59.748 55.000 8.59 8.59 0.00 3.06
4638 5618 0.695924 TTGGTCCCGGTTGATGACAT 59.304 50.000 0.00 0.00 0.00 3.06
4639 5619 0.695924 ATTGGTCCCGGTTGATGACA 59.304 50.000 0.00 0.00 0.00 3.58
4640 5620 2.561569 CTATTGGTCCCGGTTGATGAC 58.438 52.381 0.00 0.00 0.00 3.06
4641 5621 1.488812 CCTATTGGTCCCGGTTGATGA 59.511 52.381 0.00 0.00 0.00 2.92
4642 5622 1.967319 CCTATTGGTCCCGGTTGATG 58.033 55.000 0.00 0.00 0.00 3.07
4643 5623 0.182775 GCCTATTGGTCCCGGTTGAT 59.817 55.000 0.00 0.00 35.27 2.57
4644 5624 1.202099 TGCCTATTGGTCCCGGTTGA 61.202 55.000 0.00 0.00 35.27 3.18
4645 5625 0.106719 ATGCCTATTGGTCCCGGTTG 60.107 55.000 0.00 0.00 35.27 3.77
4646 5626 0.182775 GATGCCTATTGGTCCCGGTT 59.817 55.000 0.00 0.00 35.27 4.44
4647 5627 1.705997 GGATGCCTATTGGTCCCGGT 61.706 60.000 0.00 0.00 35.27 5.28
4648 5628 1.073199 GGATGCCTATTGGTCCCGG 59.927 63.158 0.00 0.00 35.27 5.73
4649 5629 0.535102 GTGGATGCCTATTGGTCCCG 60.535 60.000 1.28 0.00 35.27 5.14
4650 5630 0.535102 CGTGGATGCCTATTGGTCCC 60.535 60.000 1.28 0.00 35.27 4.46
4651 5631 1.166531 GCGTGGATGCCTATTGGTCC 61.167 60.000 0.00 0.00 35.27 4.46
4652 5632 1.498865 CGCGTGGATGCCTATTGGTC 61.499 60.000 0.00 0.00 35.27 4.02
4653 5633 1.523711 CGCGTGGATGCCTATTGGT 60.524 57.895 0.00 0.00 35.27 3.67
4654 5634 1.498865 GACGCGTGGATGCCTATTGG 61.499 60.000 20.70 0.00 0.00 3.16
4655 5635 0.809636 TGACGCGTGGATGCCTATTG 60.810 55.000 20.70 0.00 0.00 1.90
4656 5636 0.530650 CTGACGCGTGGATGCCTATT 60.531 55.000 20.70 0.00 0.00 1.73
4657 5637 1.068083 CTGACGCGTGGATGCCTAT 59.932 57.895 20.70 0.00 0.00 2.57
4658 5638 2.494445 CTGACGCGTGGATGCCTA 59.506 61.111 20.70 0.00 0.00 3.93
4661 5641 3.857854 CTGCTGACGCGTGGATGC 61.858 66.667 20.70 15.70 39.65 3.91
4662 5642 3.857854 GCTGCTGACGCGTGGATG 61.858 66.667 20.70 4.59 39.65 3.51
4663 5643 4.074526 AGCTGCTGACGCGTGGAT 62.075 61.111 20.70 0.00 39.65 3.41
4670 5650 4.383861 TCCTGCCAGCTGCTGACG 62.384 66.667 30.10 15.66 41.11 4.35
4671 5651 2.436292 CTCCTGCCAGCTGCTGAC 60.436 66.667 30.10 20.18 41.11 3.51
4672 5652 4.405671 GCTCCTGCCAGCTGCTGA 62.406 66.667 30.10 10.97 41.11 4.26
4682 5662 1.172812 ACAAAAACCTCGGCTCCTGC 61.173 55.000 0.00 0.00 38.76 4.85
4683 5663 1.318576 AACAAAAACCTCGGCTCCTG 58.681 50.000 0.00 0.00 0.00 3.86
4684 5664 2.067365 AAACAAAAACCTCGGCTCCT 57.933 45.000 0.00 0.00 0.00 3.69
4685 5665 2.882927 AAAACAAAAACCTCGGCTCC 57.117 45.000 0.00 0.00 0.00 4.70
4704 5684 4.659368 CCCCTAAACCACCCCTTTTAAAAA 59.341 41.667 1.66 0.00 0.00 1.94
4705 5685 4.232909 CCCCTAAACCACCCCTTTTAAAA 58.767 43.478 0.00 0.00 0.00 1.52
4706 5686 3.209382 ACCCCTAAACCACCCCTTTTAAA 59.791 43.478 0.00 0.00 0.00 1.52
4707 5687 2.796561 ACCCCTAAACCACCCCTTTTAA 59.203 45.455 0.00 0.00 0.00 1.52
4708 5688 2.441354 ACCCCTAAACCACCCCTTTTA 58.559 47.619 0.00 0.00 0.00 1.52
4709 5689 1.247260 ACCCCTAAACCACCCCTTTT 58.753 50.000 0.00 0.00 0.00 2.27
4710 5690 1.247260 AACCCCTAAACCACCCCTTT 58.753 50.000 0.00 0.00 0.00 3.11
4711 5691 1.247260 AAACCCCTAAACCACCCCTT 58.753 50.000 0.00 0.00 0.00 3.95
4712 5692 1.132977 CAAAACCCCTAAACCACCCCT 60.133 52.381 0.00 0.00 0.00 4.79
4713 5693 1.344065 CAAAACCCCTAAACCACCCC 58.656 55.000 0.00 0.00 0.00 4.95
4714 5694 1.344065 CCAAAACCCCTAAACCACCC 58.656 55.000 0.00 0.00 0.00 4.61
4715 5695 1.344065 CCCAAAACCCCTAAACCACC 58.656 55.000 0.00 0.00 0.00 4.61
4716 5696 1.344065 CCCCAAAACCCCTAAACCAC 58.656 55.000 0.00 0.00 0.00 4.16
4717 5697 0.191314 CCCCCAAAACCCCTAAACCA 59.809 55.000 0.00 0.00 0.00 3.67
4718 5698 3.076350 CCCCCAAAACCCCTAAACC 57.924 57.895 0.00 0.00 0.00 3.27
4733 5713 7.907841 ATATGAAACACCTAAATTAACCCCC 57.092 36.000 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.