Multiple sequence alignment - TraesCS5D01G050500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G050500 chr5D 100.000 3563 0 0 1 3563 48448286 48451848 0.000000e+00 6580.0
1 TraesCS5D01G050500 chr5D 96.623 2191 34 8 846 3003 48049181 48046998 0.000000e+00 3600.0
2 TraesCS5D01G050500 chr5D 89.507 953 47 21 935 1887 42874865 42873966 0.000000e+00 1157.0
3 TraesCS5D01G050500 chr5D 89.633 791 44 22 1888 2664 42867029 42866263 0.000000e+00 972.0
4 TraesCS5D01G050500 chr5D 84.966 1031 60 35 2088 3092 42869238 42868277 0.000000e+00 957.0
5 TraesCS5D01G050500 chr5D 82.846 1026 77 43 2593 3563 521254258 521255239 0.000000e+00 828.0
6 TraesCS5D01G050500 chr5D 92.045 440 21 6 3064 3500 48046989 48046561 1.090000e-169 606.0
7 TraesCS5D01G050500 chr5D 94.881 293 14 1 1 292 48049612 48049320 1.170000e-124 457.0
8 TraesCS5D01G050500 chr5D 83.130 492 42 16 2540 2998 42806821 42806338 9.210000e-111 411.0
9 TraesCS5D01G050500 chr5D 94.937 79 3 1 3063 3140 42806325 42806247 4.830000e-24 122.0
10 TraesCS5D01G050500 chr5B 92.617 2980 71 49 651 3563 50643095 50645992 0.000000e+00 4146.0
11 TraesCS5D01G050500 chr5B 94.731 1765 39 16 784 2536 50933313 50931591 0.000000e+00 2695.0
12 TraesCS5D01G050500 chr5B 88.754 1645 85 57 1319 2935 38355252 38356824 0.000000e+00 1921.0
13 TraesCS5D01G050500 chr5B 94.219 813 20 5 2769 3563 50931469 50930666 0.000000e+00 1216.0
14 TraesCS5D01G050500 chr5B 81.934 1024 85 46 2593 3563 555949641 555948665 0.000000e+00 774.0
15 TraesCS5D01G050500 chr5B 96.220 291 9 1 1 289 50934328 50934038 3.220000e-130 475.0
16 TraesCS5D01G050500 chr5B 85.673 349 35 12 937 1280 38354917 38355255 1.570000e-93 353.0
17 TraesCS5D01G050500 chr5B 89.734 263 18 5 2 256 50642829 50643090 9.540000e-86 327.0
18 TraesCS5D01G050500 chr5B 92.262 168 12 1 1 168 50625966 50626132 1.650000e-58 237.0
19 TraesCS5D01G050500 chr5B 86.232 138 15 3 3001 3137 38356823 38356957 2.870000e-31 147.0
20 TraesCS5D01G050500 chr5A 94.996 2258 62 15 1275 3500 38017540 38015302 0.000000e+00 3496.0
21 TraesCS5D01G050500 chr5A 93.878 1176 46 4 1368 2536 31267201 31268357 0.000000e+00 1749.0
22 TraesCS5D01G050500 chr5A 95.779 995 35 2 1549 2536 31219584 31218590 0.000000e+00 1598.0
23 TraesCS5D01G050500 chr5A 94.198 293 11 3 1 288 38018508 38018217 3.260000e-120 442.0
24 TraesCS5D01G050500 chr5A 91.077 325 29 0 992 1316 31266882 31267206 1.170000e-119 440.0
25 TraesCS5D01G050500 chr5A 86.632 389 37 9 2715 3092 31218442 31218058 1.980000e-112 416.0
26 TraesCS5D01G050500 chr5A 86.632 389 37 9 2715 3092 31268505 31268889 1.980000e-112 416.0
27 TraesCS5D01G050500 chr5A 84.320 338 14 15 784 1107 38017845 38017533 9.670000e-76 294.0
28 TraesCS5D01G050500 chr5A 81.530 379 40 16 2474 2833 32793919 32794286 5.820000e-73 285.0
29 TraesCS5D01G050500 chr5A 85.455 165 20 2 2977 3137 31273107 31273271 6.120000e-38 169.0
30 TraesCS5D01G050500 chr5A 91.579 95 6 2 1 94 38117760 38117853 2.890000e-26 130.0
31 TraesCS5D01G050500 chr5A 97.674 43 0 1 743 784 38017903 38017861 4.930000e-09 73.1
32 TraesCS5D01G050500 chr3D 86.722 1559 124 37 1098 2640 116076330 116077821 0.000000e+00 1655.0
33 TraesCS5D01G050500 chr3D 91.183 431 22 6 3138 3563 32389134 32388715 3.990000e-159 571.0
34 TraesCS5D01G050500 chr3D 82.600 477 32 12 2593 3039 32389696 32389241 1.210000e-99 374.0
35 TraesCS5D01G050500 chr6A 83.170 1022 74 41 2593 3563 66267418 66268392 0.000000e+00 845.0
36 TraesCS5D01G050500 chr6A 94.737 76 3 1 3063 3137 132972247 132972172 2.250000e-22 117.0
37 TraesCS5D01G050500 chr1A 82.428 1013 85 45 2588 3563 567965930 567964974 0.000000e+00 798.0
38 TraesCS5D01G050500 chr3B 91.534 567 39 5 1444 2004 169648382 169648945 0.000000e+00 773.0
39 TraesCS5D01G050500 chr3B 84.556 259 31 3 1151 1409 169648131 169648380 7.640000e-62 248.0
40 TraesCS5D01G050500 chr1B 87.805 574 48 8 1208 1781 681696840 681696289 0.000000e+00 652.0
41 TraesCS5D01G050500 chr1B 94.412 340 19 0 310 649 61019495 61019156 1.130000e-144 523.0
42 TraesCS5D01G050500 chr4B 90.951 431 23 6 3138 3563 310971838 310972257 1.860000e-157 566.0
43 TraesCS5D01G050500 chr4B 82.883 222 15 7 2602 2809 310958656 310958868 1.020000e-40 178.0
44 TraesCS5D01G050500 chr2B 95.076 264 13 0 285 548 676750996 676750733 1.980000e-112 416.0
45 TraesCS5D01G050500 chr3A 93.607 219 14 0 289 507 47059529 47059311 9.540000e-86 327.0
46 TraesCS5D01G050500 chr2D 95.370 108 5 0 285 392 192977342 192977449 4.730000e-39 172.0
47 TraesCS5D01G050500 chr2D 89.922 129 12 1 534 662 192977451 192977578 7.910000e-37 165.0
48 TraesCS5D01G050500 chr4A 92.683 82 5 1 3057 3137 197481257 197481338 2.250000e-22 117.0
49 TraesCS5D01G050500 chr2A 87.368 95 8 4 287 379 17788793 17788885 4.860000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G050500 chr5D 48448286 48451848 3562 False 6580.000000 6580 100.000000 1 3563 1 chr5D.!!$F1 3562
1 TraesCS5D01G050500 chr5D 48046561 48049612 3051 True 1554.333333 3600 94.516333 1 3500 3 chr5D.!!$R4 3499
2 TraesCS5D01G050500 chr5D 42873966 42874865 899 True 1157.000000 1157 89.507000 935 1887 1 chr5D.!!$R1 952
3 TraesCS5D01G050500 chr5D 42866263 42869238 2975 True 964.500000 972 87.299500 1888 3092 2 chr5D.!!$R3 1204
4 TraesCS5D01G050500 chr5D 521254258 521255239 981 False 828.000000 828 82.846000 2593 3563 1 chr5D.!!$F2 970
5 TraesCS5D01G050500 chr5D 42806247 42806821 574 True 266.500000 411 89.033500 2540 3140 2 chr5D.!!$R2 600
6 TraesCS5D01G050500 chr5B 50642829 50645992 3163 False 2236.500000 4146 91.175500 2 3563 2 chr5B.!!$F3 3561
7 TraesCS5D01G050500 chr5B 50930666 50934328 3662 True 1462.000000 2695 95.056667 1 3563 3 chr5B.!!$R2 3562
8 TraesCS5D01G050500 chr5B 38354917 38356957 2040 False 807.000000 1921 86.886333 937 3137 3 chr5B.!!$F2 2200
9 TraesCS5D01G050500 chr5B 555948665 555949641 976 True 774.000000 774 81.934000 2593 3563 1 chr5B.!!$R1 970
10 TraesCS5D01G050500 chr5A 38015302 38018508 3206 True 1076.275000 3496 92.797000 1 3500 4 chr5A.!!$R2 3499
11 TraesCS5D01G050500 chr5A 31218058 31219584 1526 True 1007.000000 1598 91.205500 1549 3092 2 chr5A.!!$R1 1543
12 TraesCS5D01G050500 chr5A 31266882 31268889 2007 False 868.333333 1749 90.529000 992 3092 3 chr5A.!!$F4 2100
13 TraesCS5D01G050500 chr3D 116076330 116077821 1491 False 1655.000000 1655 86.722000 1098 2640 1 chr3D.!!$F1 1542
14 TraesCS5D01G050500 chr3D 32388715 32389696 981 True 472.500000 571 86.891500 2593 3563 2 chr3D.!!$R1 970
15 TraesCS5D01G050500 chr6A 66267418 66268392 974 False 845.000000 845 83.170000 2593 3563 1 chr6A.!!$F1 970
16 TraesCS5D01G050500 chr1A 567964974 567965930 956 True 798.000000 798 82.428000 2588 3563 1 chr1A.!!$R1 975
17 TraesCS5D01G050500 chr3B 169648131 169648945 814 False 510.500000 773 88.045000 1151 2004 2 chr3B.!!$F1 853
18 TraesCS5D01G050500 chr1B 681696289 681696840 551 True 652.000000 652 87.805000 1208 1781 1 chr1B.!!$R2 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 514 0.036875 AGGAAGAAGAAAGGCCGGTG 59.963 55.0 1.90 0.0 0.0 4.94 F
600 615 0.107508 TTATCTCTCCGGACCGACGT 60.108 55.0 17.49 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2697 0.695803 AGGCGGAGGGGATCTTCATT 60.696 55.0 0.0 0.0 0.00 2.57 R
2634 3617 3.353557 CACTACTCCACTAGGCACTACA 58.646 50.0 0.0 0.0 41.75 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 247 7.116090 TGCATTTAAAGTTCATCAACCAAATCG 59.884 33.333 0.00 0.00 32.22 3.34
260 275 0.897863 TGCTTATGGCGGCAACCTTT 60.898 50.000 18.31 0.38 45.43 3.11
285 300 0.173708 AGCTACTAGGAACTGCGCAC 59.826 55.000 5.66 0.00 41.52 5.34
286 301 0.173708 GCTACTAGGAACTGCGCACT 59.826 55.000 5.66 4.39 41.52 4.40
287 302 1.404391 GCTACTAGGAACTGCGCACTA 59.596 52.381 5.66 5.54 41.52 2.74
288 303 2.159282 GCTACTAGGAACTGCGCACTAA 60.159 50.000 5.66 0.00 41.52 2.24
289 304 2.656560 ACTAGGAACTGCGCACTAAG 57.343 50.000 5.66 0.00 41.52 2.18
290 305 1.204941 ACTAGGAACTGCGCACTAAGG 59.795 52.381 5.66 0.00 41.52 2.69
291 306 0.535335 TAGGAACTGCGCACTAAGGG 59.465 55.000 5.66 0.00 41.52 3.95
308 323 2.489751 GCAATGCCAACGGGTAGC 59.510 61.111 0.00 0.00 36.17 3.58
309 324 3.063743 GCAATGCCAACGGGTAGCC 62.064 63.158 0.00 0.00 36.17 3.93
310 325 1.378514 CAATGCCAACGGGTAGCCT 60.379 57.895 9.73 0.00 36.17 4.58
311 326 1.077716 AATGCCAACGGGTAGCCTC 60.078 57.895 9.73 0.00 36.17 4.70
312 327 1.847798 AATGCCAACGGGTAGCCTCA 61.848 55.000 9.73 0.00 36.17 3.86
313 328 2.125106 GCCAACGGGTAGCCTCAG 60.125 66.667 9.73 0.00 36.17 3.35
314 329 2.656069 GCCAACGGGTAGCCTCAGA 61.656 63.158 9.73 0.00 36.17 3.27
315 330 1.517832 CCAACGGGTAGCCTCAGAG 59.482 63.158 9.73 0.00 0.00 3.35
316 331 1.517832 CAACGGGTAGCCTCAGAGG 59.482 63.158 12.81 12.81 38.80 3.69
317 332 1.078710 AACGGGTAGCCTCAGAGGT 59.921 57.895 18.37 7.48 37.80 3.85
318 333 1.258445 AACGGGTAGCCTCAGAGGTG 61.258 60.000 18.37 4.22 37.80 4.00
319 334 1.379977 CGGGTAGCCTCAGAGGTGA 60.380 63.158 18.37 3.32 37.80 4.02
320 335 0.757188 CGGGTAGCCTCAGAGGTGAT 60.757 60.000 18.37 7.21 37.80 3.06
321 336 0.755686 GGGTAGCCTCAGAGGTGATG 59.244 60.000 18.37 0.00 37.80 3.07
322 337 0.105778 GGTAGCCTCAGAGGTGATGC 59.894 60.000 18.37 7.97 42.86 3.91
323 338 0.105778 GTAGCCTCAGAGGTGATGCC 59.894 60.000 18.37 0.00 43.38 4.40
334 349 3.041874 GTGATGCCTCACGAGACAG 57.958 57.895 6.36 0.00 42.24 3.51
335 350 1.080995 GTGATGCCTCACGAGACAGC 61.081 60.000 6.36 0.00 42.24 4.40
336 351 1.253593 TGATGCCTCACGAGACAGCT 61.254 55.000 0.47 0.00 28.49 4.24
337 352 0.741326 GATGCCTCACGAGACAGCTA 59.259 55.000 0.00 0.00 0.00 3.32
338 353 0.743688 ATGCCTCACGAGACAGCTAG 59.256 55.000 0.00 0.00 0.00 3.42
339 354 1.315981 TGCCTCACGAGACAGCTAGG 61.316 60.000 0.00 0.00 0.00 3.02
340 355 1.435515 CCTCACGAGACAGCTAGGC 59.564 63.158 0.00 0.00 0.00 3.93
341 356 1.034838 CCTCACGAGACAGCTAGGCT 61.035 60.000 0.00 0.00 39.48 4.58
345 360 4.244326 GAGACAGCTAGGCTCGGA 57.756 61.111 3.67 0.00 43.93 4.55
346 361 2.727103 GAGACAGCTAGGCTCGGAT 58.273 57.895 3.67 0.00 43.93 4.18
347 362 0.313672 GAGACAGCTAGGCTCGGATG 59.686 60.000 3.67 0.00 43.93 3.51
348 363 1.300542 GACAGCTAGGCTCGGATGC 60.301 63.158 0.00 0.00 36.40 3.91
371 386 3.615849 GCATGGTGCTAAAGTGATAGC 57.384 47.619 0.00 0.00 46.78 2.97
372 387 3.209410 GCATGGTGCTAAAGTGATAGCT 58.791 45.455 7.71 0.00 46.74 3.32
373 388 3.629398 GCATGGTGCTAAAGTGATAGCTT 59.371 43.478 0.00 0.00 46.74 3.74
374 389 4.497006 GCATGGTGCTAAAGTGATAGCTTG 60.497 45.833 0.00 2.69 46.74 4.01
375 390 3.009723 TGGTGCTAAAGTGATAGCTTGC 58.990 45.455 0.00 0.00 46.74 4.01
376 391 3.009723 GGTGCTAAAGTGATAGCTTGCA 58.990 45.455 0.00 0.00 46.74 4.08
377 392 3.064545 GGTGCTAAAGTGATAGCTTGCAG 59.935 47.826 0.00 0.00 46.74 4.41
378 393 3.935203 GTGCTAAAGTGATAGCTTGCAGA 59.065 43.478 0.00 0.00 46.74 4.26
379 394 4.033817 GTGCTAAAGTGATAGCTTGCAGAG 59.966 45.833 0.00 0.00 46.74 3.35
389 404 2.649831 CTTGCAGAGCACAATGGGT 58.350 52.632 0.00 0.00 38.71 4.51
390 405 0.963962 CTTGCAGAGCACAATGGGTT 59.036 50.000 0.00 0.00 38.71 4.11
391 406 0.961019 TTGCAGAGCACAATGGGTTC 59.039 50.000 0.00 0.00 38.71 3.62
392 407 0.895100 TGCAGAGCACAATGGGTTCC 60.895 55.000 0.00 0.00 31.71 3.62
393 408 0.610232 GCAGAGCACAATGGGTTCCT 60.610 55.000 0.00 0.00 0.00 3.36
394 409 1.171308 CAGAGCACAATGGGTTCCTG 58.829 55.000 0.00 0.00 0.00 3.86
395 410 0.610232 AGAGCACAATGGGTTCCTGC 60.610 55.000 0.00 0.00 0.00 4.85
396 411 1.598701 GAGCACAATGGGTTCCTGCC 61.599 60.000 0.00 0.00 0.00 4.85
397 412 2.993471 GCACAATGGGTTCCTGCCG 61.993 63.158 0.00 0.00 0.00 5.69
398 413 1.303236 CACAATGGGTTCCTGCCGA 60.303 57.895 0.00 0.00 0.00 5.54
399 414 1.002134 ACAATGGGTTCCTGCCGAG 60.002 57.895 0.00 0.00 0.00 4.63
400 415 1.750399 CAATGGGTTCCTGCCGAGG 60.750 63.158 0.00 0.00 41.39 4.63
417 432 2.982130 GAGGCGGCCTCTTCAAGA 59.018 61.111 35.90 0.00 46.41 3.02
418 433 1.153469 GAGGCGGCCTCTTCAAGAG 60.153 63.158 35.90 7.53 46.41 2.85
419 434 1.608717 GAGGCGGCCTCTTCAAGAGA 61.609 60.000 35.90 0.00 45.07 3.10
434 449 8.279970 TCTTCAAGAGAGAAAGTATGAGAGAG 57.720 38.462 0.00 0.00 0.00 3.20
435 450 8.106462 TCTTCAAGAGAGAAAGTATGAGAGAGA 58.894 37.037 0.00 0.00 0.00 3.10
436 451 8.821686 TTCAAGAGAGAAAGTATGAGAGAGAT 57.178 34.615 0.00 0.00 0.00 2.75
437 452 8.224389 TCAAGAGAGAAAGTATGAGAGAGATG 57.776 38.462 0.00 0.00 0.00 2.90
438 453 8.052141 TCAAGAGAGAAAGTATGAGAGAGATGA 58.948 37.037 0.00 0.00 0.00 2.92
439 454 8.685427 CAAGAGAGAAAGTATGAGAGAGATGAA 58.315 37.037 0.00 0.00 0.00 2.57
440 455 8.821686 AGAGAGAAAGTATGAGAGAGATGAAA 57.178 34.615 0.00 0.00 0.00 2.69
441 456 9.253832 AGAGAGAAAGTATGAGAGAGATGAAAA 57.746 33.333 0.00 0.00 0.00 2.29
442 457 9.868277 GAGAGAAAGTATGAGAGAGATGAAAAA 57.132 33.333 0.00 0.00 0.00 1.94
443 458 9.874205 AGAGAAAGTATGAGAGAGATGAAAAAG 57.126 33.333 0.00 0.00 0.00 2.27
444 459 9.651913 GAGAAAGTATGAGAGAGATGAAAAAGT 57.348 33.333 0.00 0.00 0.00 2.66
445 460 9.434420 AGAAAGTATGAGAGAGATGAAAAAGTG 57.566 33.333 0.00 0.00 0.00 3.16
446 461 9.429359 GAAAGTATGAGAGAGATGAAAAAGTGA 57.571 33.333 0.00 0.00 0.00 3.41
447 462 9.784531 AAAGTATGAGAGAGATGAAAAAGTGAA 57.215 29.630 0.00 0.00 0.00 3.18
448 463 9.434420 AAGTATGAGAGAGATGAAAAAGTGAAG 57.566 33.333 0.00 0.00 0.00 3.02
449 464 8.811017 AGTATGAGAGAGATGAAAAAGTGAAGA 58.189 33.333 0.00 0.00 0.00 2.87
450 465 9.086336 GTATGAGAGAGATGAAAAAGTGAAGAG 57.914 37.037 0.00 0.00 0.00 2.85
451 466 7.295322 TGAGAGAGATGAAAAAGTGAAGAGA 57.705 36.000 0.00 0.00 0.00 3.10
452 467 7.730084 TGAGAGAGATGAAAAAGTGAAGAGAA 58.270 34.615 0.00 0.00 0.00 2.87
453 468 8.206867 TGAGAGAGATGAAAAAGTGAAGAGAAA 58.793 33.333 0.00 0.00 0.00 2.52
454 469 8.606040 AGAGAGATGAAAAAGTGAAGAGAAAG 57.394 34.615 0.00 0.00 0.00 2.62
455 470 8.428063 AGAGAGATGAAAAAGTGAAGAGAAAGA 58.572 33.333 0.00 0.00 0.00 2.52
456 471 8.606040 AGAGATGAAAAAGTGAAGAGAAAGAG 57.394 34.615 0.00 0.00 0.00 2.85
457 472 8.428063 AGAGATGAAAAAGTGAAGAGAAAGAGA 58.572 33.333 0.00 0.00 0.00 3.10
458 473 8.606040 AGATGAAAAAGTGAAGAGAAAGAGAG 57.394 34.615 0.00 0.00 0.00 3.20
459 474 7.661027 AGATGAAAAAGTGAAGAGAAAGAGAGG 59.339 37.037 0.00 0.00 0.00 3.69
460 475 6.653989 TGAAAAAGTGAAGAGAAAGAGAGGT 58.346 36.000 0.00 0.00 0.00 3.85
461 476 7.792032 TGAAAAAGTGAAGAGAAAGAGAGGTA 58.208 34.615 0.00 0.00 0.00 3.08
462 477 8.265055 TGAAAAAGTGAAGAGAAAGAGAGGTAA 58.735 33.333 0.00 0.00 0.00 2.85
463 478 9.110502 GAAAAAGTGAAGAGAAAGAGAGGTAAA 57.889 33.333 0.00 0.00 0.00 2.01
464 479 9.462606 AAAAAGTGAAGAGAAAGAGAGGTAAAA 57.537 29.630 0.00 0.00 0.00 1.52
465 480 8.669946 AAAGTGAAGAGAAAGAGAGGTAAAAG 57.330 34.615 0.00 0.00 0.00 2.27
466 481 7.368198 AGTGAAGAGAAAGAGAGGTAAAAGT 57.632 36.000 0.00 0.00 0.00 2.66
467 482 7.213678 AGTGAAGAGAAAGAGAGGTAAAAGTG 58.786 38.462 0.00 0.00 0.00 3.16
468 483 7.070074 AGTGAAGAGAAAGAGAGGTAAAAGTGA 59.930 37.037 0.00 0.00 0.00 3.41
469 484 7.711339 GTGAAGAGAAAGAGAGGTAAAAGTGAA 59.289 37.037 0.00 0.00 0.00 3.18
470 485 8.265055 TGAAGAGAAAGAGAGGTAAAAGTGAAA 58.735 33.333 0.00 0.00 0.00 2.69
471 486 8.669946 AAGAGAAAGAGAGGTAAAAGTGAAAG 57.330 34.615 0.00 0.00 0.00 2.62
472 487 8.024145 AGAGAAAGAGAGGTAAAAGTGAAAGA 57.976 34.615 0.00 0.00 0.00 2.52
473 488 8.487028 AGAGAAAGAGAGGTAAAAGTGAAAGAA 58.513 33.333 0.00 0.00 0.00 2.52
474 489 9.110502 GAGAAAGAGAGGTAAAAGTGAAAGAAA 57.889 33.333 0.00 0.00 0.00 2.52
475 490 9.114952 AGAAAGAGAGGTAAAAGTGAAAGAAAG 57.885 33.333 0.00 0.00 0.00 2.62
476 491 9.110502 GAAAGAGAGGTAAAAGTGAAAGAAAGA 57.889 33.333 0.00 0.00 0.00 2.52
477 492 8.669946 AAGAGAGGTAAAAGTGAAAGAAAGAG 57.330 34.615 0.00 0.00 0.00 2.85
478 493 8.024145 AGAGAGGTAAAAGTGAAAGAAAGAGA 57.976 34.615 0.00 0.00 0.00 3.10
479 494 8.147704 AGAGAGGTAAAAGTGAAAGAAAGAGAG 58.852 37.037 0.00 0.00 0.00 3.20
480 495 8.024145 AGAGGTAAAAGTGAAAGAAAGAGAGA 57.976 34.615 0.00 0.00 0.00 3.10
481 496 8.147704 AGAGGTAAAAGTGAAAGAAAGAGAGAG 58.852 37.037 0.00 0.00 0.00 3.20
482 497 7.220740 AGGTAAAAGTGAAAGAAAGAGAGAGG 58.779 38.462 0.00 0.00 0.00 3.69
483 498 7.071321 AGGTAAAAGTGAAAGAAAGAGAGAGGA 59.929 37.037 0.00 0.00 0.00 3.71
484 499 7.715686 GGTAAAAGTGAAAGAAAGAGAGAGGAA 59.284 37.037 0.00 0.00 0.00 3.36
485 500 7.800155 AAAAGTGAAAGAAAGAGAGAGGAAG 57.200 36.000 0.00 0.00 0.00 3.46
486 501 6.739331 AAGTGAAAGAAAGAGAGAGGAAGA 57.261 37.500 0.00 0.00 0.00 2.87
487 502 6.739331 AGTGAAAGAAAGAGAGAGGAAGAA 57.261 37.500 0.00 0.00 0.00 2.52
488 503 6.758254 AGTGAAAGAAAGAGAGAGGAAGAAG 58.242 40.000 0.00 0.00 0.00 2.85
489 504 6.553100 AGTGAAAGAAAGAGAGAGGAAGAAGA 59.447 38.462 0.00 0.00 0.00 2.87
490 505 7.070571 AGTGAAAGAAAGAGAGAGGAAGAAGAA 59.929 37.037 0.00 0.00 0.00 2.52
491 506 7.713073 GTGAAAGAAAGAGAGAGGAAGAAGAAA 59.287 37.037 0.00 0.00 0.00 2.52
492 507 7.930865 TGAAAGAAAGAGAGAGGAAGAAGAAAG 59.069 37.037 0.00 0.00 0.00 2.62
493 508 6.358974 AGAAAGAGAGAGGAAGAAGAAAGG 57.641 41.667 0.00 0.00 0.00 3.11
494 509 4.551702 AAGAGAGAGGAAGAAGAAAGGC 57.448 45.455 0.00 0.00 0.00 4.35
495 510 2.837591 AGAGAGAGGAAGAAGAAAGGCC 59.162 50.000 0.00 0.00 0.00 5.19
496 511 1.552792 AGAGAGGAAGAAGAAAGGCCG 59.447 52.381 0.00 0.00 0.00 6.13
497 512 0.615850 AGAGGAAGAAGAAAGGCCGG 59.384 55.000 0.00 0.00 0.00 6.13
498 513 0.325272 GAGGAAGAAGAAAGGCCGGT 59.675 55.000 1.90 0.00 0.00 5.28
499 514 0.036875 AGGAAGAAGAAAGGCCGGTG 59.963 55.000 1.90 0.00 0.00 4.94
500 515 0.250770 GGAAGAAGAAAGGCCGGTGT 60.251 55.000 1.90 0.00 0.00 4.16
501 516 1.002773 GGAAGAAGAAAGGCCGGTGTA 59.997 52.381 1.90 0.00 0.00 2.90
502 517 2.347731 GAAGAAGAAAGGCCGGTGTAG 58.652 52.381 1.90 0.00 0.00 2.74
503 518 1.640917 AGAAGAAAGGCCGGTGTAGA 58.359 50.000 1.90 0.00 0.00 2.59
504 519 2.188817 AGAAGAAAGGCCGGTGTAGAT 58.811 47.619 1.90 0.00 0.00 1.98
505 520 3.371965 AGAAGAAAGGCCGGTGTAGATA 58.628 45.455 1.90 0.00 0.00 1.98
506 521 3.385111 AGAAGAAAGGCCGGTGTAGATAG 59.615 47.826 1.90 0.00 0.00 2.08
507 522 1.413077 AGAAAGGCCGGTGTAGATAGC 59.587 52.381 1.90 0.00 0.00 2.97
508 523 1.138266 GAAAGGCCGGTGTAGATAGCA 59.862 52.381 1.90 0.00 0.00 3.49
509 524 1.424638 AAGGCCGGTGTAGATAGCAT 58.575 50.000 1.90 0.00 0.00 3.79
510 525 0.969894 AGGCCGGTGTAGATAGCATC 59.030 55.000 1.90 0.00 0.00 3.91
511 526 0.969894 GGCCGGTGTAGATAGCATCT 59.030 55.000 1.90 4.45 43.33 2.90
512 527 1.067495 GGCCGGTGTAGATAGCATCTC 60.067 57.143 1.90 0.00 40.76 2.75
513 528 1.401670 GCCGGTGTAGATAGCATCTCG 60.402 57.143 1.90 1.60 40.76 4.04
514 529 2.152016 CCGGTGTAGATAGCATCTCGA 58.848 52.381 0.00 0.00 40.76 4.04
515 530 2.750166 CCGGTGTAGATAGCATCTCGAT 59.250 50.000 0.00 0.00 40.76 3.59
516 531 3.426829 CCGGTGTAGATAGCATCTCGATG 60.427 52.174 0.00 2.57 40.76 3.84
517 532 3.426829 CGGTGTAGATAGCATCTCGATGG 60.427 52.174 8.81 0.00 40.76 3.51
518 533 3.119316 GGTGTAGATAGCATCTCGATGGG 60.119 52.174 8.81 0.00 40.76 4.00
519 534 3.759086 GTGTAGATAGCATCTCGATGGGA 59.241 47.826 8.81 0.00 40.76 4.37
520 535 4.013050 TGTAGATAGCATCTCGATGGGAG 58.987 47.826 8.81 0.00 44.58 4.30
527 542 3.423344 TCTCGATGGGAGAGTAGGC 57.577 57.895 0.00 0.00 46.80 3.93
528 543 0.847373 TCTCGATGGGAGAGTAGGCT 59.153 55.000 0.00 0.00 46.80 4.58
529 544 1.202830 TCTCGATGGGAGAGTAGGCTC 60.203 57.143 0.00 0.00 46.80 4.70
530 545 0.551396 TCGATGGGAGAGTAGGCTCA 59.449 55.000 0.00 0.00 44.00 4.26
531 546 0.671251 CGATGGGAGAGTAGGCTCAC 59.329 60.000 0.00 0.00 44.00 3.51
534 549 1.781786 TGGGAGAGTAGGCTCACATC 58.218 55.000 0.00 0.00 43.06 3.06
535 550 1.007118 TGGGAGAGTAGGCTCACATCA 59.993 52.381 0.00 0.00 43.06 3.07
536 551 2.324541 GGGAGAGTAGGCTCACATCAT 58.675 52.381 0.00 0.00 44.00 2.45
537 552 2.036992 GGGAGAGTAGGCTCACATCATG 59.963 54.545 0.00 0.00 44.00 3.07
538 553 2.036992 GGAGAGTAGGCTCACATCATGG 59.963 54.545 0.00 0.00 44.00 3.66
539 554 2.036992 GAGAGTAGGCTCACATCATGGG 59.963 54.545 0.00 0.00 44.00 4.00
540 555 1.071385 GAGTAGGCTCACATCATGGGG 59.929 57.143 0.00 0.00 41.29 4.96
543 558 3.837578 GCTCACATCATGGGGCTG 58.162 61.111 0.00 0.00 0.00 4.85
544 559 2.487532 GCTCACATCATGGGGCTGC 61.488 63.158 0.00 0.00 0.00 5.25
545 560 1.226542 CTCACATCATGGGGCTGCT 59.773 57.895 0.00 0.00 0.00 4.24
546 561 1.077285 TCACATCATGGGGCTGCTG 60.077 57.895 0.00 0.00 0.00 4.41
547 562 1.379443 CACATCATGGGGCTGCTGT 60.379 57.895 0.00 0.00 0.00 4.40
548 563 0.968901 CACATCATGGGGCTGCTGTT 60.969 55.000 0.00 0.00 0.00 3.16
549 564 0.968901 ACATCATGGGGCTGCTGTTG 60.969 55.000 0.00 0.00 0.00 3.33
550 565 0.968901 CATCATGGGGCTGCTGTTGT 60.969 55.000 0.00 0.00 0.00 3.32
551 566 0.968901 ATCATGGGGCTGCTGTTGTG 60.969 55.000 0.00 0.00 0.00 3.33
552 567 1.904865 CATGGGGCTGCTGTTGTGT 60.905 57.895 0.00 0.00 0.00 3.72
553 568 1.152483 ATGGGGCTGCTGTTGTGTT 60.152 52.632 0.00 0.00 0.00 3.32
554 569 1.466025 ATGGGGCTGCTGTTGTGTTG 61.466 55.000 0.00 0.00 0.00 3.33
555 570 2.730094 GGGCTGCTGTTGTGTTGG 59.270 61.111 0.00 0.00 0.00 3.77
556 571 1.827789 GGGCTGCTGTTGTGTTGGA 60.828 57.895 0.00 0.00 0.00 3.53
557 572 1.181098 GGGCTGCTGTTGTGTTGGAT 61.181 55.000 0.00 0.00 0.00 3.41
558 573 1.533625 GGCTGCTGTTGTGTTGGATA 58.466 50.000 0.00 0.00 0.00 2.59
559 574 1.470098 GGCTGCTGTTGTGTTGGATAG 59.530 52.381 0.00 0.00 0.00 2.08
560 575 1.470098 GCTGCTGTTGTGTTGGATAGG 59.530 52.381 0.00 0.00 0.00 2.57
561 576 2.783135 CTGCTGTTGTGTTGGATAGGT 58.217 47.619 0.00 0.00 0.00 3.08
562 577 2.485426 CTGCTGTTGTGTTGGATAGGTG 59.515 50.000 0.00 0.00 0.00 4.00
563 578 2.158682 TGCTGTTGTGTTGGATAGGTGT 60.159 45.455 0.00 0.00 0.00 4.16
564 579 2.226437 GCTGTTGTGTTGGATAGGTGTG 59.774 50.000 0.00 0.00 0.00 3.82
565 580 3.738982 CTGTTGTGTTGGATAGGTGTGA 58.261 45.455 0.00 0.00 0.00 3.58
566 581 4.133820 CTGTTGTGTTGGATAGGTGTGAA 58.866 43.478 0.00 0.00 0.00 3.18
567 582 4.527944 TGTTGTGTTGGATAGGTGTGAAA 58.472 39.130 0.00 0.00 0.00 2.69
568 583 5.136828 TGTTGTGTTGGATAGGTGTGAAAT 58.863 37.500 0.00 0.00 0.00 2.17
569 584 5.596361 TGTTGTGTTGGATAGGTGTGAAATT 59.404 36.000 0.00 0.00 0.00 1.82
570 585 5.703978 TGTGTTGGATAGGTGTGAAATTG 57.296 39.130 0.00 0.00 0.00 2.32
571 586 4.022416 TGTGTTGGATAGGTGTGAAATTGC 60.022 41.667 0.00 0.00 0.00 3.56
572 587 4.022416 GTGTTGGATAGGTGTGAAATTGCA 60.022 41.667 0.00 0.00 0.00 4.08
573 588 4.218200 TGTTGGATAGGTGTGAAATTGCAG 59.782 41.667 0.00 0.00 0.00 4.41
574 589 3.355378 TGGATAGGTGTGAAATTGCAGG 58.645 45.455 0.00 0.00 0.00 4.85
575 590 2.689983 GGATAGGTGTGAAATTGCAGGG 59.310 50.000 0.00 0.00 0.00 4.45
576 591 2.969821 TAGGTGTGAAATTGCAGGGT 57.030 45.000 0.00 0.00 0.00 4.34
577 592 1.331214 AGGTGTGAAATTGCAGGGTG 58.669 50.000 0.00 0.00 0.00 4.61
578 593 0.318120 GGTGTGAAATTGCAGGGTGG 59.682 55.000 0.00 0.00 0.00 4.61
579 594 1.039856 GTGTGAAATTGCAGGGTGGT 58.960 50.000 0.00 0.00 0.00 4.16
580 595 1.000274 GTGTGAAATTGCAGGGTGGTC 60.000 52.381 0.00 0.00 0.00 4.02
581 596 1.133513 TGTGAAATTGCAGGGTGGTCT 60.134 47.619 0.00 0.00 0.00 3.85
582 597 1.963515 GTGAAATTGCAGGGTGGTCTT 59.036 47.619 0.00 0.00 0.00 3.01
583 598 3.153919 GTGAAATTGCAGGGTGGTCTTA 58.846 45.455 0.00 0.00 0.00 2.10
584 599 3.763897 GTGAAATTGCAGGGTGGTCTTAT 59.236 43.478 0.00 0.00 0.00 1.73
585 600 4.016444 TGAAATTGCAGGGTGGTCTTATC 58.984 43.478 0.00 0.00 0.00 1.75
586 601 4.263905 TGAAATTGCAGGGTGGTCTTATCT 60.264 41.667 0.00 0.00 0.00 1.98
587 602 3.567478 ATTGCAGGGTGGTCTTATCTC 57.433 47.619 0.00 0.00 0.00 2.75
588 603 2.254152 TGCAGGGTGGTCTTATCTCT 57.746 50.000 0.00 0.00 0.00 3.10
589 604 2.111384 TGCAGGGTGGTCTTATCTCTC 58.889 52.381 0.00 0.00 0.00 3.20
590 605 1.414550 GCAGGGTGGTCTTATCTCTCC 59.585 57.143 0.00 0.00 0.00 3.71
591 606 1.683917 CAGGGTGGTCTTATCTCTCCG 59.316 57.143 0.00 0.00 0.00 4.63
592 607 1.041437 GGGTGGTCTTATCTCTCCGG 58.959 60.000 0.00 0.00 0.00 5.14
593 608 1.411216 GGGTGGTCTTATCTCTCCGGA 60.411 57.143 2.93 2.93 0.00 5.14
594 609 1.682323 GGTGGTCTTATCTCTCCGGAC 59.318 57.143 0.00 0.00 0.00 4.79
595 610 1.682323 GTGGTCTTATCTCTCCGGACC 59.318 57.143 0.00 0.00 44.57 4.46
596 611 0.953003 GGTCTTATCTCTCCGGACCG 59.047 60.000 6.99 6.99 37.34 4.79
597 612 1.476471 GGTCTTATCTCTCCGGACCGA 60.476 57.143 17.49 0.00 37.34 4.69
598 613 1.603326 GTCTTATCTCTCCGGACCGAC 59.397 57.143 17.49 0.00 0.00 4.79
599 614 0.587285 CTTATCTCTCCGGACCGACG 59.413 60.000 17.49 5.70 0.00 5.12
600 615 0.107508 TTATCTCTCCGGACCGACGT 60.108 55.000 17.49 0.00 0.00 4.34
601 616 0.812811 TATCTCTCCGGACCGACGTG 60.813 60.000 17.49 6.78 0.00 4.49
602 617 3.812019 CTCTCCGGACCGACGTGG 61.812 72.222 17.49 0.00 46.41 4.94
607 622 3.740397 CGGACCGACGTGGCTGTA 61.740 66.667 8.64 0.00 43.94 2.74
608 623 2.126189 GGACCGACGTGGCTGTAC 60.126 66.667 0.00 0.00 43.94 2.90
609 624 2.126189 GACCGACGTGGCTGTACC 60.126 66.667 0.00 0.00 43.94 3.34
610 625 3.958822 GACCGACGTGGCTGTACCG 62.959 68.421 0.00 0.00 43.94 4.02
611 626 3.740397 CCGACGTGGCTGTACCGA 61.740 66.667 0.00 0.00 43.94 4.69
612 627 2.256158 CGACGTGGCTGTACCGAA 59.744 61.111 0.00 0.00 43.94 4.30
613 628 1.800315 CGACGTGGCTGTACCGAAG 60.800 63.158 0.00 0.00 43.94 3.79
614 629 2.048503 ACGTGGCTGTACCGAAGC 60.049 61.111 0.00 0.00 43.94 3.86
615 630 2.048597 CGTGGCTGTACCGAAGCA 60.049 61.111 6.08 0.00 43.94 3.91
616 631 1.447838 CGTGGCTGTACCGAAGCAT 60.448 57.895 6.08 0.00 43.94 3.79
617 632 1.421410 CGTGGCTGTACCGAAGCATC 61.421 60.000 6.08 0.00 43.94 3.91
618 633 0.391130 GTGGCTGTACCGAAGCATCA 60.391 55.000 6.08 0.00 43.94 3.07
619 634 0.391130 TGGCTGTACCGAAGCATCAC 60.391 55.000 6.08 0.00 43.94 3.06
620 635 1.090052 GGCTGTACCGAAGCATCACC 61.090 60.000 6.08 0.00 42.69 4.02
621 636 0.391130 GCTGTACCGAAGCATCACCA 60.391 55.000 0.00 0.00 40.52 4.17
622 637 1.645034 CTGTACCGAAGCATCACCAG 58.355 55.000 0.00 0.00 0.00 4.00
623 638 0.249120 TGTACCGAAGCATCACCAGG 59.751 55.000 0.00 0.00 0.00 4.45
624 639 0.462047 GTACCGAAGCATCACCAGGG 60.462 60.000 0.00 0.00 0.00 4.45
625 640 0.907704 TACCGAAGCATCACCAGGGT 60.908 55.000 0.00 0.00 0.00 4.34
626 641 0.907704 ACCGAAGCATCACCAGGGTA 60.908 55.000 0.00 0.00 0.00 3.69
627 642 0.251916 CCGAAGCATCACCAGGGTAA 59.748 55.000 0.00 0.00 0.00 2.85
628 643 1.134098 CCGAAGCATCACCAGGGTAAT 60.134 52.381 0.00 0.00 0.00 1.89
629 644 1.942657 CGAAGCATCACCAGGGTAATG 59.057 52.381 0.00 0.00 0.00 1.90
631 646 3.502164 GCATCACCAGGGTAATGCT 57.498 52.632 17.54 0.00 44.19 3.79
632 647 2.638480 GCATCACCAGGGTAATGCTA 57.362 50.000 17.54 0.00 44.19 3.49
633 648 2.222027 GCATCACCAGGGTAATGCTAC 58.778 52.381 17.54 0.00 44.19 3.58
634 649 2.851195 CATCACCAGGGTAATGCTACC 58.149 52.381 0.00 0.00 46.24 3.18
645 660 5.108385 GGTAATGCTACCATTGTACATGC 57.892 43.478 0.00 0.00 46.23 4.06
646 661 4.023193 GGTAATGCTACCATTGTACATGCC 60.023 45.833 0.00 0.00 46.23 4.40
655 670 3.960102 CCATTGTACATGCCCTAATGGTT 59.040 43.478 17.07 0.00 41.64 3.67
674 689 2.316361 TATTTGCATTGGCGCGGACG 62.316 55.000 8.83 0.00 45.35 4.79
807 1634 2.600470 AAAAAGGGCTGGGGTCGC 60.600 61.111 0.00 0.00 0.00 5.19
808 1635 3.146828 AAAAAGGGCTGGGGTCGCT 62.147 57.895 0.00 0.00 0.00 4.93
809 1636 1.785353 AAAAAGGGCTGGGGTCGCTA 61.785 55.000 0.00 0.00 0.00 4.26
1061 1936 1.077285 TCCTCGTGCTATCCACCGA 60.077 57.895 0.00 0.00 41.53 4.69
2159 3120 4.891727 CGACCCGGCCATCTTCGG 62.892 72.222 2.24 0.00 45.29 4.30
2522 3489 3.753434 CGACTGCGCCTCCTCAGT 61.753 66.667 4.18 0.00 45.32 3.41
2634 3617 2.243221 AGCCATGGAGGATTTACTGCTT 59.757 45.455 18.40 0.00 41.22 3.91
2642 3625 3.610911 AGGATTTACTGCTTGTAGTGCC 58.389 45.455 1.71 0.00 32.08 5.01
2683 3671 2.623878 TTGGGCAGTCGTTTAGTTCA 57.376 45.000 0.00 0.00 0.00 3.18
2684 3672 2.623878 TGGGCAGTCGTTTAGTTCAA 57.376 45.000 0.00 0.00 0.00 2.69
2685 3673 3.134574 TGGGCAGTCGTTTAGTTCAAT 57.865 42.857 0.00 0.00 0.00 2.57
2686 3674 4.274602 TGGGCAGTCGTTTAGTTCAATA 57.725 40.909 0.00 0.00 0.00 1.90
2687 3675 4.839121 TGGGCAGTCGTTTAGTTCAATAT 58.161 39.130 0.00 0.00 0.00 1.28
2688 3676 5.250200 TGGGCAGTCGTTTAGTTCAATATT 58.750 37.500 0.00 0.00 0.00 1.28
2754 3772 0.243365 GCACCGAATGATTGTTGCCA 59.757 50.000 0.00 0.00 0.00 4.92
2788 3817 5.569059 CAGTACGACTTGAATCAATTTTGGC 59.431 40.000 0.00 0.00 0.00 4.52
2810 3839 4.494690 GCGCGAATTTGATTCATCTTCTCA 60.495 41.667 12.10 0.00 39.22 3.27
3124 4236 6.931840 AGGATCTTTGTCTACTTCAGTTTGTC 59.068 38.462 0.00 0.00 0.00 3.18
3175 4390 1.777878 TGTCTTTGGCAGTCCCCTTTA 59.222 47.619 0.00 0.00 0.00 1.85
3265 4553 3.573598 TGCATGTTCTATTTTTGCACCG 58.426 40.909 0.00 0.00 38.32 4.94
3266 4554 3.005261 TGCATGTTCTATTTTTGCACCGT 59.995 39.130 0.00 0.00 38.32 4.83
3267 4555 3.364621 GCATGTTCTATTTTTGCACCGTG 59.635 43.478 0.00 0.00 33.58 4.94
3268 4556 3.634568 TGTTCTATTTTTGCACCGTGG 57.365 42.857 0.00 0.00 0.00 4.94
3269 4557 3.215151 TGTTCTATTTTTGCACCGTGGA 58.785 40.909 0.00 0.00 0.00 4.02
3382 4671 3.671716 ACTCACCTCGGTTAAATTCCAC 58.328 45.455 0.00 0.00 0.00 4.02
3410 4699 2.094675 CAGAAATGTTGGTAGCTGGGG 58.905 52.381 0.00 0.00 0.00 4.96
3431 4720 5.299531 GGGGTAAGCTTCAGGATTTTATCAC 59.700 44.000 0.00 0.00 0.00 3.06
3500 4806 4.285807 TGTGTCTCATCAAACGGTTTTG 57.714 40.909 2.79 1.16 43.17 2.44
3520 4826 1.228245 GAGAGTTGGTTGCTGGGCA 60.228 57.895 0.00 0.00 36.47 5.36
3521 4827 0.823356 GAGAGTTGGTTGCTGGGCAA 60.823 55.000 0.51 0.51 46.80 4.52
3533 4839 5.385509 TTGCTGGGCAATTTAAGTTAGTC 57.614 39.130 0.51 0.00 43.99 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 247 3.689161 TGCCGCCATAAGCATGAATATAC 59.311 43.478 0.00 0.00 44.04 1.47
237 252 0.455410 GTTGCCGCCATAAGCATGAA 59.545 50.000 0.00 0.00 44.04 2.57
260 275 2.233922 GCAGTTCCTAGTAGCTCAACCA 59.766 50.000 0.00 0.00 0.00 3.67
291 306 2.489751 GCTACCCGTTGGCATTGC 59.510 61.111 0.00 0.00 33.59 3.56
292 307 1.376609 GAGGCTACCCGTTGGCATTG 61.377 60.000 5.72 0.00 35.76 2.82
293 308 1.077716 GAGGCTACCCGTTGGCATT 60.078 57.895 5.72 0.00 35.76 3.56
294 309 2.257409 CTGAGGCTACCCGTTGGCAT 62.257 60.000 5.72 0.00 35.76 4.40
295 310 2.925706 TGAGGCTACCCGTTGGCA 60.926 61.111 5.72 0.00 35.76 4.92
296 311 2.125106 CTGAGGCTACCCGTTGGC 60.125 66.667 0.00 0.00 35.76 4.52
297 312 1.517832 CTCTGAGGCTACCCGTTGG 59.482 63.158 0.00 0.00 35.76 3.77
298 313 1.258445 ACCTCTGAGGCTACCCGTTG 61.258 60.000 23.43 0.00 39.63 4.10
299 314 1.078710 ACCTCTGAGGCTACCCGTT 59.921 57.895 23.43 0.00 39.63 4.44
300 315 1.682684 CACCTCTGAGGCTACCCGT 60.683 63.158 23.43 0.00 39.63 5.28
301 316 0.757188 ATCACCTCTGAGGCTACCCG 60.757 60.000 23.43 5.68 39.63 5.28
302 317 0.755686 CATCACCTCTGAGGCTACCC 59.244 60.000 23.43 0.00 39.63 3.69
317 332 1.216444 GCTGTCTCGTGAGGCATCA 59.784 57.895 4.40 0.00 42.81 3.07
318 333 0.741326 TAGCTGTCTCGTGAGGCATC 59.259 55.000 4.40 0.61 42.81 3.91
319 334 0.743688 CTAGCTGTCTCGTGAGGCAT 59.256 55.000 4.40 0.00 42.81 4.40
320 335 1.315981 CCTAGCTGTCTCGTGAGGCA 61.316 60.000 3.87 3.87 41.34 4.75
321 336 1.435515 CCTAGCTGTCTCGTGAGGC 59.564 63.158 0.00 0.00 0.00 4.70
322 337 1.034838 AGCCTAGCTGTCTCGTGAGG 61.035 60.000 0.00 0.00 37.57 3.86
323 338 0.380378 GAGCCTAGCTGTCTCGTGAG 59.620 60.000 0.00 0.00 39.88 3.51
324 339 1.369839 CGAGCCTAGCTGTCTCGTGA 61.370 60.000 19.34 0.00 43.16 4.35
325 340 1.063327 CGAGCCTAGCTGTCTCGTG 59.937 63.158 19.34 1.18 43.16 4.35
326 341 2.115911 CCGAGCCTAGCTGTCTCGT 61.116 63.158 23.07 0.00 45.71 4.18
327 342 1.169661 ATCCGAGCCTAGCTGTCTCG 61.170 60.000 20.16 20.16 46.44 4.04
328 343 0.313672 CATCCGAGCCTAGCTGTCTC 59.686 60.000 0.00 0.00 39.88 3.36
329 344 1.743321 GCATCCGAGCCTAGCTGTCT 61.743 60.000 0.00 0.00 39.88 3.41
330 345 1.300542 GCATCCGAGCCTAGCTGTC 60.301 63.158 0.00 0.00 39.88 3.51
331 346 2.818132 GCATCCGAGCCTAGCTGT 59.182 61.111 0.00 0.00 39.88 4.40
339 354 3.285215 CCATGCTGGCATCCGAGC 61.285 66.667 4.98 0.00 33.90 5.03
340 355 2.184830 CACCATGCTGGCATCCGAG 61.185 63.158 4.98 0.00 42.67 4.63
341 356 2.124612 CACCATGCTGGCATCCGA 60.125 61.111 4.98 0.00 42.67 4.55
342 357 3.896133 GCACCATGCTGGCATCCG 61.896 66.667 4.98 1.85 42.67 4.18
351 366 3.209410 AGCTATCACTTTAGCACCATGC 58.791 45.455 6.28 0.00 45.72 4.06
352 367 4.497006 GCAAGCTATCACTTTAGCACCATG 60.497 45.833 6.28 0.00 45.72 3.66
353 368 3.629398 GCAAGCTATCACTTTAGCACCAT 59.371 43.478 6.28 0.00 45.72 3.55
354 369 3.009723 GCAAGCTATCACTTTAGCACCA 58.990 45.455 6.28 0.00 45.72 4.17
355 370 3.009723 TGCAAGCTATCACTTTAGCACC 58.990 45.455 6.28 0.00 45.72 5.01
356 371 3.935203 TCTGCAAGCTATCACTTTAGCAC 59.065 43.478 6.28 0.00 45.72 4.40
357 372 4.186926 CTCTGCAAGCTATCACTTTAGCA 58.813 43.478 6.28 0.00 45.72 3.49
358 373 4.792528 CTCTGCAAGCTATCACTTTAGC 57.207 45.455 0.00 0.00 44.03 3.09
371 386 0.963962 AACCCATTGTGCTCTGCAAG 59.036 50.000 0.00 0.00 41.47 4.01
372 387 0.961019 GAACCCATTGTGCTCTGCAA 59.039 50.000 0.00 0.00 41.47 4.08
373 388 0.895100 GGAACCCATTGTGCTCTGCA 60.895 55.000 0.00 0.00 35.60 4.41
374 389 0.610232 AGGAACCCATTGTGCTCTGC 60.610 55.000 0.00 0.00 0.00 4.26
375 390 1.171308 CAGGAACCCATTGTGCTCTG 58.829 55.000 0.00 0.00 0.00 3.35
376 391 0.610232 GCAGGAACCCATTGTGCTCT 60.610 55.000 0.00 0.00 0.00 4.09
377 392 1.598701 GGCAGGAACCCATTGTGCTC 61.599 60.000 0.00 0.00 34.46 4.26
378 393 1.607467 GGCAGGAACCCATTGTGCT 60.607 57.895 0.00 0.00 34.46 4.40
379 394 2.973082 GGCAGGAACCCATTGTGC 59.027 61.111 0.00 0.00 0.00 4.57
380 395 1.303236 TCGGCAGGAACCCATTGTG 60.303 57.895 0.00 0.00 0.00 3.33
381 396 1.002134 CTCGGCAGGAACCCATTGT 60.002 57.895 0.00 0.00 0.00 2.71
382 397 1.750399 CCTCGGCAGGAACCCATTG 60.750 63.158 0.00 0.00 43.65 2.82
383 398 1.923395 TCCTCGGCAGGAACCCATT 60.923 57.895 3.59 0.00 46.84 3.16
384 399 2.285368 TCCTCGGCAGGAACCCAT 60.285 61.111 3.59 0.00 46.84 4.00
401 416 1.610673 TCTCTTGAAGAGGCCGCCT 60.611 57.895 21.04 13.16 42.54 5.52
402 417 1.153469 CTCTCTTGAAGAGGCCGCC 60.153 63.158 21.04 0.00 46.73 6.13
403 418 4.511636 CTCTCTTGAAGAGGCCGC 57.488 61.111 21.04 0.00 46.73 6.53
409 424 8.106462 TCTCTCTCATACTTTCTCTCTTGAAGA 58.894 37.037 0.00 0.00 0.00 2.87
410 425 8.279970 TCTCTCTCATACTTTCTCTCTTGAAG 57.720 38.462 0.00 0.00 0.00 3.02
411 426 8.685427 CATCTCTCTCATACTTTCTCTCTTGAA 58.315 37.037 0.00 0.00 0.00 2.69
412 427 8.052141 TCATCTCTCTCATACTTTCTCTCTTGA 58.948 37.037 0.00 0.00 0.00 3.02
413 428 8.224389 TCATCTCTCTCATACTTTCTCTCTTG 57.776 38.462 0.00 0.00 0.00 3.02
414 429 8.821686 TTCATCTCTCTCATACTTTCTCTCTT 57.178 34.615 0.00 0.00 0.00 2.85
415 430 8.821686 TTTCATCTCTCTCATACTTTCTCTCT 57.178 34.615 0.00 0.00 0.00 3.10
416 431 9.868277 TTTTTCATCTCTCTCATACTTTCTCTC 57.132 33.333 0.00 0.00 0.00 3.20
417 432 9.874205 CTTTTTCATCTCTCTCATACTTTCTCT 57.126 33.333 0.00 0.00 0.00 3.10
418 433 9.651913 ACTTTTTCATCTCTCTCATACTTTCTC 57.348 33.333 0.00 0.00 0.00 2.87
419 434 9.434420 CACTTTTTCATCTCTCTCATACTTTCT 57.566 33.333 0.00 0.00 0.00 2.52
420 435 9.429359 TCACTTTTTCATCTCTCTCATACTTTC 57.571 33.333 0.00 0.00 0.00 2.62
421 436 9.784531 TTCACTTTTTCATCTCTCTCATACTTT 57.215 29.630 0.00 0.00 0.00 2.66
422 437 9.434420 CTTCACTTTTTCATCTCTCTCATACTT 57.566 33.333 0.00 0.00 0.00 2.24
423 438 8.811017 TCTTCACTTTTTCATCTCTCTCATACT 58.189 33.333 0.00 0.00 0.00 2.12
424 439 8.994429 TCTTCACTTTTTCATCTCTCTCATAC 57.006 34.615 0.00 0.00 0.00 2.39
425 440 9.029368 TCTCTTCACTTTTTCATCTCTCTCATA 57.971 33.333 0.00 0.00 0.00 2.15
426 441 7.905265 TCTCTTCACTTTTTCATCTCTCTCAT 58.095 34.615 0.00 0.00 0.00 2.90
427 442 7.295322 TCTCTTCACTTTTTCATCTCTCTCA 57.705 36.000 0.00 0.00 0.00 3.27
428 443 8.600449 TTTCTCTTCACTTTTTCATCTCTCTC 57.400 34.615 0.00 0.00 0.00 3.20
429 444 8.428063 TCTTTCTCTTCACTTTTTCATCTCTCT 58.572 33.333 0.00 0.00 0.00 3.10
430 445 8.600449 TCTTTCTCTTCACTTTTTCATCTCTC 57.400 34.615 0.00 0.00 0.00 3.20
431 446 8.428063 TCTCTTTCTCTTCACTTTTTCATCTCT 58.572 33.333 0.00 0.00 0.00 3.10
432 447 8.600449 TCTCTTTCTCTTCACTTTTTCATCTC 57.400 34.615 0.00 0.00 0.00 2.75
433 448 7.661027 CCTCTCTTTCTCTTCACTTTTTCATCT 59.339 37.037 0.00 0.00 0.00 2.90
434 449 7.443879 ACCTCTCTTTCTCTTCACTTTTTCATC 59.556 37.037 0.00 0.00 0.00 2.92
435 450 7.286313 ACCTCTCTTTCTCTTCACTTTTTCAT 58.714 34.615 0.00 0.00 0.00 2.57
436 451 6.653989 ACCTCTCTTTCTCTTCACTTTTTCA 58.346 36.000 0.00 0.00 0.00 2.69
437 452 8.664211 TTACCTCTCTTTCTCTTCACTTTTTC 57.336 34.615 0.00 0.00 0.00 2.29
438 453 9.462606 TTTTACCTCTCTTTCTCTTCACTTTTT 57.537 29.630 0.00 0.00 0.00 1.94
439 454 9.114952 CTTTTACCTCTCTTTCTCTTCACTTTT 57.885 33.333 0.00 0.00 0.00 2.27
440 455 8.268605 ACTTTTACCTCTCTTTCTCTTCACTTT 58.731 33.333 0.00 0.00 0.00 2.66
441 456 7.713073 CACTTTTACCTCTCTTTCTCTTCACTT 59.287 37.037 0.00 0.00 0.00 3.16
442 457 7.070074 TCACTTTTACCTCTCTTTCTCTTCACT 59.930 37.037 0.00 0.00 0.00 3.41
443 458 7.210873 TCACTTTTACCTCTCTTTCTCTTCAC 58.789 38.462 0.00 0.00 0.00 3.18
444 459 7.361457 TCACTTTTACCTCTCTTTCTCTTCA 57.639 36.000 0.00 0.00 0.00 3.02
445 460 8.664211 TTTCACTTTTACCTCTCTTTCTCTTC 57.336 34.615 0.00 0.00 0.00 2.87
446 461 8.487028 TCTTTCACTTTTACCTCTCTTTCTCTT 58.513 33.333 0.00 0.00 0.00 2.85
447 462 8.024145 TCTTTCACTTTTACCTCTCTTTCTCT 57.976 34.615 0.00 0.00 0.00 3.10
448 463 8.664211 TTCTTTCACTTTTACCTCTCTTTCTC 57.336 34.615 0.00 0.00 0.00 2.87
449 464 9.114952 CTTTCTTTCACTTTTACCTCTCTTTCT 57.885 33.333 0.00 0.00 0.00 2.52
450 465 9.110502 TCTTTCTTTCACTTTTACCTCTCTTTC 57.889 33.333 0.00 0.00 0.00 2.62
451 466 9.114952 CTCTTTCTTTCACTTTTACCTCTCTTT 57.885 33.333 0.00 0.00 0.00 2.52
452 467 8.487028 TCTCTTTCTTTCACTTTTACCTCTCTT 58.513 33.333 0.00 0.00 0.00 2.85
453 468 8.024145 TCTCTTTCTTTCACTTTTACCTCTCT 57.976 34.615 0.00 0.00 0.00 3.10
454 469 8.145122 TCTCTCTTTCTTTCACTTTTACCTCTC 58.855 37.037 0.00 0.00 0.00 3.20
455 470 8.024145 TCTCTCTTTCTTTCACTTTTACCTCT 57.976 34.615 0.00 0.00 0.00 3.69
456 471 7.386573 CCTCTCTCTTTCTTTCACTTTTACCTC 59.613 40.741 0.00 0.00 0.00 3.85
457 472 7.071321 TCCTCTCTCTTTCTTTCACTTTTACCT 59.929 37.037 0.00 0.00 0.00 3.08
458 473 7.217906 TCCTCTCTCTTTCTTTCACTTTTACC 58.782 38.462 0.00 0.00 0.00 2.85
459 474 8.664211 TTCCTCTCTCTTTCTTTCACTTTTAC 57.336 34.615 0.00 0.00 0.00 2.01
460 475 8.705594 TCTTCCTCTCTCTTTCTTTCACTTTTA 58.294 33.333 0.00 0.00 0.00 1.52
461 476 7.569240 TCTTCCTCTCTCTTTCTTTCACTTTT 58.431 34.615 0.00 0.00 0.00 2.27
462 477 7.130681 TCTTCCTCTCTCTTTCTTTCACTTT 57.869 36.000 0.00 0.00 0.00 2.66
463 478 6.739331 TCTTCCTCTCTCTTTCTTTCACTT 57.261 37.500 0.00 0.00 0.00 3.16
464 479 6.553100 TCTTCTTCCTCTCTCTTTCTTTCACT 59.447 38.462 0.00 0.00 0.00 3.41
465 480 6.754193 TCTTCTTCCTCTCTCTTTCTTTCAC 58.246 40.000 0.00 0.00 0.00 3.18
466 481 6.985653 TCTTCTTCCTCTCTCTTTCTTTCA 57.014 37.500 0.00 0.00 0.00 2.69
467 482 7.387673 CCTTTCTTCTTCCTCTCTCTTTCTTTC 59.612 40.741 0.00 0.00 0.00 2.62
468 483 7.223584 CCTTTCTTCTTCCTCTCTCTTTCTTT 58.776 38.462 0.00 0.00 0.00 2.52
469 484 6.744056 GCCTTTCTTCTTCCTCTCTCTTTCTT 60.744 42.308 0.00 0.00 0.00 2.52
470 485 5.279960 GCCTTTCTTCTTCCTCTCTCTTTCT 60.280 44.000 0.00 0.00 0.00 2.52
471 486 4.935205 GCCTTTCTTCTTCCTCTCTCTTTC 59.065 45.833 0.00 0.00 0.00 2.62
472 487 4.263287 GGCCTTTCTTCTTCCTCTCTCTTT 60.263 45.833 0.00 0.00 0.00 2.52
473 488 3.263170 GGCCTTTCTTCTTCCTCTCTCTT 59.737 47.826 0.00 0.00 0.00 2.85
474 489 2.837591 GGCCTTTCTTCTTCCTCTCTCT 59.162 50.000 0.00 0.00 0.00 3.10
475 490 2.418060 CGGCCTTTCTTCTTCCTCTCTC 60.418 54.545 0.00 0.00 0.00 3.20
476 491 1.552792 CGGCCTTTCTTCTTCCTCTCT 59.447 52.381 0.00 0.00 0.00 3.10
477 492 1.406205 CCGGCCTTTCTTCTTCCTCTC 60.406 57.143 0.00 0.00 0.00 3.20
478 493 0.615850 CCGGCCTTTCTTCTTCCTCT 59.384 55.000 0.00 0.00 0.00 3.69
479 494 0.325272 ACCGGCCTTTCTTCTTCCTC 59.675 55.000 0.00 0.00 0.00 3.71
480 495 0.036875 CACCGGCCTTTCTTCTTCCT 59.963 55.000 0.00 0.00 0.00 3.36
481 496 0.250770 ACACCGGCCTTTCTTCTTCC 60.251 55.000 0.00 0.00 0.00 3.46
482 497 2.028385 TCTACACCGGCCTTTCTTCTTC 60.028 50.000 0.00 0.00 0.00 2.87
483 498 1.975680 TCTACACCGGCCTTTCTTCTT 59.024 47.619 0.00 0.00 0.00 2.52
484 499 1.640917 TCTACACCGGCCTTTCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
485 500 2.693267 ATCTACACCGGCCTTTCTTC 57.307 50.000 0.00 0.00 0.00 2.87
486 501 2.158943 GCTATCTACACCGGCCTTTCTT 60.159 50.000 0.00 0.00 0.00 2.52
487 502 1.413077 GCTATCTACACCGGCCTTTCT 59.587 52.381 0.00 0.00 0.00 2.52
488 503 1.138266 TGCTATCTACACCGGCCTTTC 59.862 52.381 0.00 0.00 0.00 2.62
489 504 1.200519 TGCTATCTACACCGGCCTTT 58.799 50.000 0.00 0.00 0.00 3.11
490 505 1.344763 GATGCTATCTACACCGGCCTT 59.655 52.381 0.00 0.00 0.00 4.35
491 506 0.969894 GATGCTATCTACACCGGCCT 59.030 55.000 0.00 0.00 0.00 5.19
492 507 0.969894 AGATGCTATCTACACCGGCC 59.030 55.000 0.00 0.00 38.00 6.13
493 508 1.401670 CGAGATGCTATCTACACCGGC 60.402 57.143 0.00 0.00 40.38 6.13
494 509 2.152016 TCGAGATGCTATCTACACCGG 58.848 52.381 0.00 0.00 40.38 5.28
495 510 3.426829 CCATCGAGATGCTATCTACACCG 60.427 52.174 7.53 0.00 40.38 4.94
496 511 3.119316 CCCATCGAGATGCTATCTACACC 60.119 52.174 7.53 0.00 40.38 4.16
497 512 3.759086 TCCCATCGAGATGCTATCTACAC 59.241 47.826 7.53 0.00 40.38 2.90
498 513 4.013050 CTCCCATCGAGATGCTATCTACA 58.987 47.826 7.53 0.00 41.63 2.74
499 514 4.265893 TCTCCCATCGAGATGCTATCTAC 58.734 47.826 7.53 0.00 42.97 2.59
500 515 4.018870 ACTCTCCCATCGAGATGCTATCTA 60.019 45.833 7.53 0.00 46.71 1.98
501 516 3.245229 ACTCTCCCATCGAGATGCTATCT 60.245 47.826 7.53 0.00 46.71 1.98
502 517 3.088532 ACTCTCCCATCGAGATGCTATC 58.911 50.000 7.53 0.00 46.71 2.08
503 518 3.168035 ACTCTCCCATCGAGATGCTAT 57.832 47.619 7.53 0.00 46.71 2.97
504 519 2.666272 ACTCTCCCATCGAGATGCTA 57.334 50.000 7.53 0.00 46.71 3.49
505 520 2.513753 CTACTCTCCCATCGAGATGCT 58.486 52.381 7.53 0.00 46.71 3.79
506 521 1.543802 CCTACTCTCCCATCGAGATGC 59.456 57.143 7.53 0.00 46.71 3.91
507 522 1.543802 GCCTACTCTCCCATCGAGATG 59.456 57.143 6.12 6.12 46.71 2.90
508 523 1.427368 AGCCTACTCTCCCATCGAGAT 59.573 52.381 0.00 0.00 46.71 2.75
509 524 0.847373 AGCCTACTCTCCCATCGAGA 59.153 55.000 0.00 0.00 45.75 4.04
510 525 1.243902 GAGCCTACTCTCCCATCGAG 58.756 60.000 0.00 0.00 40.03 4.04
511 526 0.551396 TGAGCCTACTCTCCCATCGA 59.449 55.000 0.00 0.00 43.85 3.59
512 527 0.671251 GTGAGCCTACTCTCCCATCG 59.329 60.000 0.00 0.00 43.85 3.84
513 528 1.781786 TGTGAGCCTACTCTCCCATC 58.218 55.000 0.00 0.00 43.85 3.51
514 529 2.324541 GATGTGAGCCTACTCTCCCAT 58.675 52.381 0.00 0.00 43.85 4.00
515 530 1.007118 TGATGTGAGCCTACTCTCCCA 59.993 52.381 0.00 0.00 43.85 4.37
516 531 1.781786 TGATGTGAGCCTACTCTCCC 58.218 55.000 0.00 0.00 43.85 4.30
517 532 2.036992 CCATGATGTGAGCCTACTCTCC 59.963 54.545 0.00 0.00 43.85 3.71
518 533 2.036992 CCCATGATGTGAGCCTACTCTC 59.963 54.545 0.00 0.00 43.85 3.20
519 534 2.045524 CCCATGATGTGAGCCTACTCT 58.954 52.381 0.00 0.00 43.85 3.24
520 535 1.071385 CCCCATGATGTGAGCCTACTC 59.929 57.143 0.00 0.00 43.76 2.59
521 536 1.135094 CCCCATGATGTGAGCCTACT 58.865 55.000 0.00 0.00 0.00 2.57
522 537 0.536006 GCCCCATGATGTGAGCCTAC 60.536 60.000 0.00 0.00 0.00 3.18
523 538 0.695462 AGCCCCATGATGTGAGCCTA 60.695 55.000 0.00 0.00 0.00 3.93
524 539 2.005266 AGCCCCATGATGTGAGCCT 61.005 57.895 0.00 0.00 0.00 4.58
525 540 1.826921 CAGCCCCATGATGTGAGCC 60.827 63.158 0.00 0.00 0.00 4.70
526 541 2.487532 GCAGCCCCATGATGTGAGC 61.488 63.158 0.00 0.00 0.00 4.26
527 542 1.101635 CAGCAGCCCCATGATGTGAG 61.102 60.000 0.00 0.00 31.98 3.51
528 543 1.077285 CAGCAGCCCCATGATGTGA 60.077 57.895 0.00 0.00 31.98 3.58
529 544 3.521605 CAGCAGCCCCATGATGTG 58.478 61.111 0.00 0.00 31.98 3.21
530 545 3.093555 ACAGCAGCCCCATGATGT 58.906 55.556 0.00 0.00 44.55 3.06
531 546 0.968901 ACAACAGCAGCCCCATGATG 60.969 55.000 0.00 0.00 42.25 3.07
532 547 0.968901 CACAACAGCAGCCCCATGAT 60.969 55.000 0.00 0.00 0.00 2.45
533 548 1.604308 CACAACAGCAGCCCCATGA 60.604 57.895 0.00 0.00 0.00 3.07
534 549 1.466025 AACACAACAGCAGCCCCATG 61.466 55.000 0.00 0.00 0.00 3.66
535 550 1.152483 AACACAACAGCAGCCCCAT 60.152 52.632 0.00 0.00 0.00 4.00
536 551 2.126596 CAACACAACAGCAGCCCCA 61.127 57.895 0.00 0.00 0.00 4.96
537 552 2.730094 CAACACAACAGCAGCCCC 59.270 61.111 0.00 0.00 0.00 5.80
538 553 1.181098 ATCCAACACAACAGCAGCCC 61.181 55.000 0.00 0.00 0.00 5.19
539 554 1.470098 CTATCCAACACAACAGCAGCC 59.530 52.381 0.00 0.00 0.00 4.85
540 555 1.470098 CCTATCCAACACAACAGCAGC 59.530 52.381 0.00 0.00 0.00 5.25
541 556 2.485426 CACCTATCCAACACAACAGCAG 59.515 50.000 0.00 0.00 0.00 4.24
542 557 2.158682 ACACCTATCCAACACAACAGCA 60.159 45.455 0.00 0.00 0.00 4.41
543 558 2.226437 CACACCTATCCAACACAACAGC 59.774 50.000 0.00 0.00 0.00 4.40
544 559 3.738982 TCACACCTATCCAACACAACAG 58.261 45.455 0.00 0.00 0.00 3.16
545 560 3.847671 TCACACCTATCCAACACAACA 57.152 42.857 0.00 0.00 0.00 3.33
546 561 5.705609 ATTTCACACCTATCCAACACAAC 57.294 39.130 0.00 0.00 0.00 3.32
547 562 5.508825 GCAATTTCACACCTATCCAACACAA 60.509 40.000 0.00 0.00 0.00 3.33
548 563 4.022416 GCAATTTCACACCTATCCAACACA 60.022 41.667 0.00 0.00 0.00 3.72
549 564 4.022416 TGCAATTTCACACCTATCCAACAC 60.022 41.667 0.00 0.00 0.00 3.32
550 565 4.148079 TGCAATTTCACACCTATCCAACA 58.852 39.130 0.00 0.00 0.00 3.33
551 566 4.380867 CCTGCAATTTCACACCTATCCAAC 60.381 45.833 0.00 0.00 0.00 3.77
552 567 3.763360 CCTGCAATTTCACACCTATCCAA 59.237 43.478 0.00 0.00 0.00 3.53
553 568 3.355378 CCTGCAATTTCACACCTATCCA 58.645 45.455 0.00 0.00 0.00 3.41
554 569 2.689983 CCCTGCAATTTCACACCTATCC 59.310 50.000 0.00 0.00 0.00 2.59
555 570 3.129287 CACCCTGCAATTTCACACCTATC 59.871 47.826 0.00 0.00 0.00 2.08
556 571 3.091545 CACCCTGCAATTTCACACCTAT 58.908 45.455 0.00 0.00 0.00 2.57
557 572 2.513753 CACCCTGCAATTTCACACCTA 58.486 47.619 0.00 0.00 0.00 3.08
558 573 1.331214 CACCCTGCAATTTCACACCT 58.669 50.000 0.00 0.00 0.00 4.00
559 574 0.318120 CCACCCTGCAATTTCACACC 59.682 55.000 0.00 0.00 0.00 4.16
560 575 1.000274 GACCACCCTGCAATTTCACAC 60.000 52.381 0.00 0.00 0.00 3.82
561 576 1.133513 AGACCACCCTGCAATTTCACA 60.134 47.619 0.00 0.00 0.00 3.58
562 577 1.620822 AGACCACCCTGCAATTTCAC 58.379 50.000 0.00 0.00 0.00 3.18
563 578 2.380064 AAGACCACCCTGCAATTTCA 57.620 45.000 0.00 0.00 0.00 2.69
564 579 4.273318 AGATAAGACCACCCTGCAATTTC 58.727 43.478 0.00 0.00 0.00 2.17
565 580 4.018050 AGAGATAAGACCACCCTGCAATTT 60.018 41.667 0.00 0.00 0.00 1.82
566 581 3.525199 AGAGATAAGACCACCCTGCAATT 59.475 43.478 0.00 0.00 0.00 2.32
567 582 3.118531 AGAGATAAGACCACCCTGCAAT 58.881 45.455 0.00 0.00 0.00 3.56
568 583 2.501723 GAGAGATAAGACCACCCTGCAA 59.498 50.000 0.00 0.00 0.00 4.08
569 584 2.111384 GAGAGATAAGACCACCCTGCA 58.889 52.381 0.00 0.00 0.00 4.41
570 585 1.414550 GGAGAGATAAGACCACCCTGC 59.585 57.143 0.00 0.00 0.00 4.85
571 586 1.683917 CGGAGAGATAAGACCACCCTG 59.316 57.143 0.00 0.00 0.00 4.45
572 587 1.411787 CCGGAGAGATAAGACCACCCT 60.412 57.143 0.00 0.00 0.00 4.34
573 588 1.041437 CCGGAGAGATAAGACCACCC 58.959 60.000 0.00 0.00 0.00 4.61
574 589 1.682323 GTCCGGAGAGATAAGACCACC 59.318 57.143 3.06 0.00 0.00 4.61
575 590 1.682323 GGTCCGGAGAGATAAGACCAC 59.318 57.143 3.06 0.00 45.20 4.16
576 591 1.749635 CGGTCCGGAGAGATAAGACCA 60.750 57.143 3.06 0.00 46.00 4.02
577 592 0.953003 CGGTCCGGAGAGATAAGACC 59.047 60.000 3.06 0.00 42.94 3.85
578 593 1.603326 GTCGGTCCGGAGAGATAAGAC 59.397 57.143 12.29 3.25 0.00 3.01
579 594 1.809271 CGTCGGTCCGGAGAGATAAGA 60.809 57.143 12.29 0.00 0.00 2.10
580 595 0.587285 CGTCGGTCCGGAGAGATAAG 59.413 60.000 12.29 0.00 0.00 1.73
581 596 0.107508 ACGTCGGTCCGGAGAGATAA 60.108 55.000 12.29 0.00 0.00 1.75
582 597 0.812811 CACGTCGGTCCGGAGAGATA 60.813 60.000 12.29 0.00 0.00 1.98
583 598 2.113433 CACGTCGGTCCGGAGAGAT 61.113 63.158 12.29 0.00 0.00 2.75
584 599 2.745100 CACGTCGGTCCGGAGAGA 60.745 66.667 12.29 4.15 0.00 3.10
585 600 3.812019 CCACGTCGGTCCGGAGAG 61.812 72.222 12.29 1.06 0.00 3.20
590 605 3.740397 TACAGCCACGTCGGTCCG 61.740 66.667 4.39 4.39 36.97 4.79
591 606 2.126189 GTACAGCCACGTCGGTCC 60.126 66.667 0.00 0.00 36.97 4.46
592 607 2.126189 GGTACAGCCACGTCGGTC 60.126 66.667 0.00 0.03 36.97 4.79
593 608 4.047059 CGGTACAGCCACGTCGGT 62.047 66.667 0.00 0.00 36.97 4.69
594 609 3.271706 TTCGGTACAGCCACGTCGG 62.272 63.158 0.00 0.00 36.97 4.79
595 610 1.800315 CTTCGGTACAGCCACGTCG 60.800 63.158 0.00 0.00 36.97 5.12
596 611 2.092882 GCTTCGGTACAGCCACGTC 61.093 63.158 0.00 0.00 36.97 4.34
597 612 2.048503 GCTTCGGTACAGCCACGT 60.049 61.111 0.00 0.00 36.97 4.49
598 613 1.421410 GATGCTTCGGTACAGCCACG 61.421 60.000 0.00 0.00 36.33 4.94
599 614 0.391130 TGATGCTTCGGTACAGCCAC 60.391 55.000 0.00 0.00 36.33 5.01
600 615 0.391130 GTGATGCTTCGGTACAGCCA 60.391 55.000 0.00 0.00 36.33 4.75
601 616 1.090052 GGTGATGCTTCGGTACAGCC 61.090 60.000 0.00 0.00 36.33 4.85
602 617 0.391130 TGGTGATGCTTCGGTACAGC 60.391 55.000 0.00 0.00 37.82 4.40
603 618 1.645034 CTGGTGATGCTTCGGTACAG 58.355 55.000 0.00 0.00 0.00 2.74
604 619 0.249120 CCTGGTGATGCTTCGGTACA 59.751 55.000 0.00 0.00 0.00 2.90
605 620 0.462047 CCCTGGTGATGCTTCGGTAC 60.462 60.000 0.00 0.00 0.00 3.34
606 621 0.907704 ACCCTGGTGATGCTTCGGTA 60.908 55.000 0.00 0.00 0.00 4.02
607 622 0.907704 TACCCTGGTGATGCTTCGGT 60.908 55.000 0.00 2.52 0.00 4.69
608 623 0.251916 TTACCCTGGTGATGCTTCGG 59.748 55.000 0.00 0.00 0.00 4.30
609 624 1.942657 CATTACCCTGGTGATGCTTCG 59.057 52.381 8.00 0.00 35.80 3.79
614 629 2.851195 GGTAGCATTACCCTGGTGATG 58.149 52.381 14.85 14.85 43.06 3.07
624 639 4.023193 GGGCATGTACAATGGTAGCATTAC 60.023 45.833 19.18 15.06 0.00 1.89
625 640 4.141274 AGGGCATGTACAATGGTAGCATTA 60.141 41.667 19.18 5.13 0.00 1.90
626 641 2.958355 GGGCATGTACAATGGTAGCATT 59.042 45.455 14.31 14.31 0.00 3.56
627 642 2.175499 AGGGCATGTACAATGGTAGCAT 59.825 45.455 0.00 0.40 0.00 3.79
628 643 1.563879 AGGGCATGTACAATGGTAGCA 59.436 47.619 0.00 0.00 0.00 3.49
629 644 2.348411 AGGGCATGTACAATGGTAGC 57.652 50.000 0.00 0.00 0.00 3.58
630 645 4.761739 CCATTAGGGCATGTACAATGGTAG 59.238 45.833 10.95 0.00 40.39 3.18
631 646 4.724399 CCATTAGGGCATGTACAATGGTA 58.276 43.478 10.95 0.00 40.39 3.25
632 647 3.565307 CCATTAGGGCATGTACAATGGT 58.435 45.455 10.95 0.00 40.39 3.55
634 649 6.899393 ATAACCATTAGGGCATGTACAATG 57.101 37.500 0.00 0.12 42.05 2.82
635 650 7.686615 GCAAATAACCATTAGGGCATGTACAAT 60.687 37.037 0.00 0.00 42.05 2.71
636 651 6.406400 GCAAATAACCATTAGGGCATGTACAA 60.406 38.462 0.00 0.00 42.05 2.41
637 652 5.068460 GCAAATAACCATTAGGGCATGTACA 59.932 40.000 0.00 0.00 42.05 2.90
638 653 5.068460 TGCAAATAACCATTAGGGCATGTAC 59.932 40.000 0.00 0.00 42.05 2.90
639 654 5.204292 TGCAAATAACCATTAGGGCATGTA 58.796 37.500 0.00 0.00 42.05 2.29
640 655 4.029520 TGCAAATAACCATTAGGGCATGT 58.970 39.130 0.00 0.00 42.05 3.21
641 656 4.669206 TGCAAATAACCATTAGGGCATG 57.331 40.909 0.00 0.00 42.05 4.06
642 657 5.455040 CCAATGCAAATAACCATTAGGGCAT 60.455 40.000 0.00 0.00 42.05 4.40
643 658 4.141756 CCAATGCAAATAACCATTAGGGCA 60.142 41.667 0.00 0.00 42.05 5.36
644 659 4.379652 CCAATGCAAATAACCATTAGGGC 58.620 43.478 0.00 0.00 42.05 5.19
645 660 4.379652 GCCAATGCAAATAACCATTAGGG 58.620 43.478 0.00 0.00 39.27 3.53
646 661 4.050553 CGCCAATGCAAATAACCATTAGG 58.949 43.478 0.00 0.00 38.07 2.69
655 670 1.431440 GTCCGCGCCAATGCAAATA 59.569 52.632 0.00 0.00 37.32 1.40
720 749 1.529865 CGGGTCTGTTTTTCTTCGTCC 59.470 52.381 0.00 0.00 0.00 4.79
806 1633 1.222113 GGTCAAGGGTCCAGCTAGC 59.778 63.158 6.62 6.62 0.00 3.42
807 1634 1.908483 GGGTCAAGGGTCCAGCTAG 59.092 63.158 0.00 0.00 0.00 3.42
808 1635 1.987855 CGGGTCAAGGGTCCAGCTA 60.988 63.158 0.00 0.00 0.00 3.32
809 1636 3.322466 CGGGTCAAGGGTCCAGCT 61.322 66.667 0.00 0.00 0.00 4.24
1422 2363 2.645510 GCTGGTCGTCGTTGTCGTG 61.646 63.158 0.00 0.00 38.33 4.35
1755 2697 0.695803 AGGCGGAGGGGATCTTCATT 60.696 55.000 0.00 0.00 0.00 2.57
2634 3617 3.353557 CACTACTCCACTAGGCACTACA 58.646 50.000 0.00 0.00 41.75 2.74
2642 3625 2.719739 TCCGAACCACTACTCCACTAG 58.280 52.381 0.00 0.00 0.00 2.57
2686 3674 9.599056 TCATCTCTCATCTGAACCTCTATTAAT 57.401 33.333 0.00 0.00 0.00 1.40
2687 3675 9.076781 CTCATCTCTCATCTGAACCTCTATTAA 57.923 37.037 0.00 0.00 0.00 1.40
2688 3676 8.224025 ACTCATCTCTCATCTGAACCTCTATTA 58.776 37.037 0.00 0.00 0.00 0.98
2754 3772 6.710597 TTCAAGTCGTACTGGATAAGCTAT 57.289 37.500 0.00 0.00 26.21 2.97
2788 3817 5.147767 TGAGAAGATGAATCAAATTCGCG 57.852 39.130 0.00 0.00 42.15 5.87
2810 3839 2.549754 CAAACAGTCGGAACAGAGCAAT 59.450 45.455 0.00 0.00 0.00 3.56
2905 3997 6.764560 TGTATGTATGCATGCATAGGATGATC 59.235 38.462 34.99 23.01 41.59 2.92
3124 4236 4.157289 AGCAATTTAGCATGACCAGAACAG 59.843 41.667 0.00 0.00 36.85 3.16
3175 4390 3.675228 CGTAAGTTCACGAGCCATAACCT 60.675 47.826 0.00 0.00 44.69 3.50
3265 4553 3.069586 TCGTCCTACATGATCCATTCCAC 59.930 47.826 0.00 0.00 0.00 4.02
3266 4554 3.304829 TCGTCCTACATGATCCATTCCA 58.695 45.455 0.00 0.00 0.00 3.53
3267 4555 4.336889 TTCGTCCTACATGATCCATTCC 57.663 45.455 0.00 0.00 0.00 3.01
3268 4556 5.300752 ACATTCGTCCTACATGATCCATTC 58.699 41.667 0.00 0.00 0.00 2.67
3269 4557 5.163311 TGACATTCGTCCTACATGATCCATT 60.163 40.000 0.00 0.00 41.85 3.16
3382 4671 5.882557 AGCTACCAACATTTCTGTCATAAGG 59.117 40.000 0.00 0.00 33.36 2.69
3410 4699 8.950208 ACTAGTGATAAAATCCTGAAGCTTAC 57.050 34.615 0.00 0.00 0.00 2.34
3500 4806 1.303643 CCCAGCAACCAACTCTCCC 60.304 63.158 0.00 0.00 0.00 4.30
3520 4826 7.502561 AGCAACCAACAGAGACTAACTTAAATT 59.497 33.333 0.00 0.00 0.00 1.82
3521 4827 6.998673 AGCAACCAACAGAGACTAACTTAAAT 59.001 34.615 0.00 0.00 0.00 1.40
3522 4828 6.354130 AGCAACCAACAGAGACTAACTTAAA 58.646 36.000 0.00 0.00 0.00 1.52
3523 4829 5.925509 AGCAACCAACAGAGACTAACTTAA 58.074 37.500 0.00 0.00 0.00 1.85
3533 4839 1.896220 TTGCCTAGCAACCAACAGAG 58.104 50.000 0.00 0.00 43.99 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.