Multiple sequence alignment - TraesCS5D01G050400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G050400 chr5D 100.000 3729 0 0 1 3729 48050061 48046333 0.000000e+00 6887.0
1 TraesCS5D01G050400 chr5D 96.623 2191 34 8 881 3064 48449131 48451288 0.000000e+00 3600.0
2 TraesCS5D01G050400 chr5D 89.540 956 44 18 970 1925 42874865 42873966 0.000000e+00 1160.0
3 TraesCS5D01G050400 chr5D 94.635 727 35 4 14 739 48447851 48448574 0.000000e+00 1123.0
4 TraesCS5D01G050400 chr5D 89.407 793 44 20 1926 2704 42867029 42866263 0.000000e+00 963.0
5 TraesCS5D01G050400 chr5D 83.072 957 56 49 2126 3064 42869238 42868370 0.000000e+00 773.0
6 TraesCS5D01G050400 chr5D 92.045 440 21 6 3073 3501 48451349 48451785 1.150000e-169 606.0
7 TraesCS5D01G050400 chr5D 84.422 597 46 20 2578 3149 42806821 42806247 9.110000e-151 544.0
8 TraesCS5D01G050400 chr5D 90.331 362 28 3 3147 3501 521254819 521255180 5.640000e-128 468.0
9 TraesCS5D01G050400 chr5D 80.492 569 74 22 36 588 48654734 48655281 5.800000e-108 401.0
10 TraesCS5D01G050400 chr5D 82.812 448 35 12 2631 3064 521254258 521254677 2.740000e-96 363.0
11 TraesCS5D01G050400 chr5B 93.306 2211 54 30 881 3064 50643295 50645438 0.000000e+00 3177.0
12 TraesCS5D01G050400 chr5B 95.068 1703 37 19 881 2574 50933255 50931591 0.000000e+00 2636.0
13 TraesCS5D01G050400 chr5B 91.673 1393 57 27 1357 2745 38355252 38356589 0.000000e+00 1875.0
14 TraesCS5D01G050400 chr5B 93.961 861 46 5 2 859 50934775 50933918 0.000000e+00 1297.0
15 TraesCS5D01G050400 chr5B 92.479 718 42 6 2 709 50642379 50643094 0.000000e+00 1016.0
16 TraesCS5D01G050400 chr5B 88.022 551 61 5 69 618 50625586 50626132 0.000000e+00 647.0
17 TraesCS5D01G050400 chr5B 93.135 437 20 6 3073 3502 50931157 50930724 1.890000e-177 632.0
18 TraesCS5D01G050400 chr5B 93.287 432 18 6 3079 3502 50645506 50645934 8.790000e-176 627.0
19 TraesCS5D01G050400 chr5B 89.305 374 28 8 3147 3510 555949086 555948715 3.390000e-125 459.0
20 TraesCS5D01G050400 chr5B 96.310 271 6 2 2798 3064 50931488 50931218 3.420000e-120 442.0
21 TraesCS5D01G050400 chr5B 85.511 352 33 12 972 1318 38354917 38355255 5.930000e-93 351.0
22 TraesCS5D01G050400 chr5B 90.608 181 17 0 2829 3009 38358553 38358733 1.340000e-59 241.0
23 TraesCS5D01G050400 chr5B 100.000 83 0 0 2680 2762 50931551 50931469 1.790000e-33 154.0
24 TraesCS5D01G050400 chr5B 91.346 104 2 3 786 883 50643127 50643229 6.500000e-28 135.0
25 TraesCS5D01G050400 chr5B 89.231 65 7 0 2 66 50624400 50624464 8.580000e-12 82.4
26 TraesCS5D01G050400 chr5A 95.970 1762 44 10 1315 3064 38017536 38015790 0.000000e+00 2835.0
27 TraesCS5D01G050400 chr5A 87.522 1683 99 40 1406 3064 31267201 31268796 0.000000e+00 1842.0
28 TraesCS5D01G050400 chr5A 88.216 1502 85 38 1587 3064 31219584 31218151 0.000000e+00 1709.0
29 TraesCS5D01G050400 chr5A 92.370 865 48 8 2 849 38018966 38018103 0.000000e+00 1216.0
30 TraesCS5D01G050400 chr5A 96.662 659 17 4 3073 3729 38015729 38015074 0.000000e+00 1090.0
31 TraesCS5D01G050400 chr5A 90.854 328 27 1 1027 1354 31266882 31267206 1.590000e-118 436.0
32 TraesCS5D01G050400 chr5A 79.492 512 49 27 2512 2988 32793919 32794409 2.800000e-81 313.0
33 TraesCS5D01G050400 chr5A 86.328 256 28 5 290 543 38117603 38117853 4.750000e-69 272.0
34 TraesCS5D01G050400 chr5A 91.160 181 16 0 2829 3009 32795874 32796054 2.880000e-61 246.0
35 TraesCS5D01G050400 chr5A 91.160 181 12 1 2829 3009 31271785 31271961 3.720000e-60 243.0
36 TraesCS5D01G050400 chr5A 83.094 278 8 12 883 1145 38017786 38017533 2.260000e-52 217.0
37 TraesCS5D01G050400 chr5A 95.690 116 4 1 3550 3664 696287367 696287252 6.360000e-43 185.0
38 TraesCS5D01G050400 chr5A 94.783 115 5 1 3551 3664 50352392 50352278 1.060000e-40 178.0
39 TraesCS5D01G050400 chr5A 86.452 155 15 3 2 154 38116429 38116579 8.290000e-37 165.0
40 TraesCS5D01G050400 chr5A 86.607 112 10 5 3038 3146 20365425 20365534 6.540000e-23 119.0
41 TraesCS5D01G050400 chr5A 86.607 112 10 5 3038 3146 554436346 554436455 6.540000e-23 119.0
42 TraesCS5D01G050400 chr3D 86.799 1515 121 28 1176 2680 116076376 116077821 0.000000e+00 1616.0
43 TraesCS5D01G050400 chr3D 89.785 372 28 6 3147 3510 32389134 32388765 5.640000e-128 468.0
44 TraesCS5D01G050400 chr3D 83.221 447 35 10 2631 3064 32389696 32389277 1.260000e-99 374.0
45 TraesCS5D01G050400 chr3B 91.182 567 41 5 1482 2042 169648382 169648945 0.000000e+00 761.0
46 TraesCS5D01G050400 chr1B 87.868 577 48 8 1243 1819 681696843 681696289 0.000000e+00 658.0
47 TraesCS5D01G050400 chr6A 90.331 362 27 4 3147 3501 66267973 66268333 5.640000e-128 468.0
48 TraesCS5D01G050400 chr6A 83.445 447 34 13 2631 3064 66267418 66267837 2.720000e-101 379.0
49 TraesCS5D01G050400 chr6A 85.714 112 11 5 3038 3146 132972281 132972172 3.040000e-21 113.0
50 TraesCS5D01G050400 chr1A 89.125 377 27 10 3143 3510 567965395 567965024 1.220000e-124 457.0
51 TraesCS5D01G050400 chr1A 81.858 452 40 14 2626 3064 567965930 567965508 3.570000e-90 342.0
52 TraesCS5D01G050400 chr7D 96.522 115 3 1 3551 3664 158431376 158431262 4.920000e-44 189.0
53 TraesCS5D01G050400 chrUn 95.652 115 4 1 3551 3664 220534539 220534425 2.290000e-42 183.0
54 TraesCS5D01G050400 chrUn 95.652 115 4 1 3551 3664 374993841 374993955 2.290000e-42 183.0
55 TraesCS5D01G050400 chr3A 95.652 115 4 1 3551 3664 109322083 109321969 2.290000e-42 183.0
56 TraesCS5D01G050400 chr2A 95.652 115 4 1 3551 3664 466159049 466158935 2.290000e-42 183.0
57 TraesCS5D01G050400 chr2A 94.118 119 6 1 3551 3668 214138155 214138037 2.960000e-41 180.0
58 TraesCS5D01G050400 chr7A 86.607 112 10 5 3038 3146 72962006 72962115 6.540000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G050400 chr5D 48046333 48050061 3728 True 6887.000000 6887 100.000000 1 3729 1 chr5D.!!$R3 3728
1 TraesCS5D01G050400 chr5D 48447851 48451785 3934 False 1776.333333 3600 94.434333 14 3501 3 chr5D.!!$F2 3487
2 TraesCS5D01G050400 chr5D 42873966 42874865 899 True 1160.000000 1160 89.540000 970 1925 1 chr5D.!!$R2 955
3 TraesCS5D01G050400 chr5D 42866263 42869238 2975 True 868.000000 963 86.239500 1926 3064 2 chr5D.!!$R4 1138
4 TraesCS5D01G050400 chr5D 42806247 42806821 574 True 544.000000 544 84.422000 2578 3149 1 chr5D.!!$R1 571
5 TraesCS5D01G050400 chr5D 521254258 521255180 922 False 415.500000 468 86.571500 2631 3501 2 chr5D.!!$F3 870
6 TraesCS5D01G050400 chr5D 48654734 48655281 547 False 401.000000 401 80.492000 36 588 1 chr5D.!!$F1 552
7 TraesCS5D01G050400 chr5B 50642379 50645934 3555 False 1238.750000 3177 92.604500 2 3502 4 chr5B.!!$F3 3500
8 TraesCS5D01G050400 chr5B 50930724 50934775 4051 True 1032.200000 2636 95.694800 2 3502 5 chr5B.!!$R2 3500
9 TraesCS5D01G050400 chr5B 38354917 38358733 3816 False 822.333333 1875 89.264000 972 3009 3 chr5B.!!$F1 2037
10 TraesCS5D01G050400 chr5B 50624400 50626132 1732 False 364.700000 647 88.626500 2 618 2 chr5B.!!$F2 616
11 TraesCS5D01G050400 chr5A 31218151 31219584 1433 True 1709.000000 1709 88.216000 1587 3064 1 chr5A.!!$R1 1477
12 TraesCS5D01G050400 chr5A 38015074 38018966 3892 True 1339.500000 2835 92.024000 2 3729 4 chr5A.!!$R4 3727
13 TraesCS5D01G050400 chr5A 31266882 31271961 5079 False 840.333333 1842 89.845333 1027 3064 3 chr5A.!!$F3 2037
14 TraesCS5D01G050400 chr5A 32793919 32796054 2135 False 279.500000 313 85.326000 2512 3009 2 chr5A.!!$F4 497
15 TraesCS5D01G050400 chr5A 38116429 38117853 1424 False 218.500000 272 86.390000 2 543 2 chr5A.!!$F5 541
16 TraesCS5D01G050400 chr3D 116076376 116077821 1445 False 1616.000000 1616 86.799000 1176 2680 1 chr3D.!!$F1 1504
17 TraesCS5D01G050400 chr3D 32388765 32389696 931 True 421.000000 468 86.503000 2631 3510 2 chr3D.!!$R1 879
18 TraesCS5D01G050400 chr3B 169648382 169648945 563 False 761.000000 761 91.182000 1482 2042 1 chr3B.!!$F1 560
19 TraesCS5D01G050400 chr1B 681696289 681696843 554 True 658.000000 658 87.868000 1243 1819 1 chr1B.!!$R1 576
20 TraesCS5D01G050400 chr6A 66267418 66268333 915 False 423.500000 468 86.888000 2631 3501 2 chr6A.!!$F1 870
21 TraesCS5D01G050400 chr1A 567965024 567965930 906 True 399.500000 457 85.491500 2626 3510 2 chr1A.!!$R1 884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 2810 0.804989 GCAAGCTTCGGTTGTGCTAT 59.195 50.000 0.0 0.0 42.18 2.97 F
757 3208 0.896923 ATGGTCATTTGCATTGGCGT 59.103 45.000 0.0 0.0 45.35 5.68 F
1982 5410 1.963338 GCTCACGCACTCCTGCTTT 60.963 57.895 0.0 0.0 41.77 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 5781 2.987125 GGTGGCGTAGTGGGTGAT 59.013 61.111 0.00 0.00 0.00 3.06 R
2642 6115 3.961408 TCCTCCATGGCTAGACTAGAAAC 59.039 47.826 13.91 3.35 35.26 2.78 R
3634 8489 2.026014 CGGCAGTGTGTTTGTGGC 59.974 61.111 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 1245 1.239347 GTCCCTGCAAAGGAACTCAC 58.761 55.000 6.71 0.00 38.49 3.51
188 2225 2.121291 TGCCATTGCGTCCAAAGATA 57.879 45.000 0.00 0.00 41.78 1.98
189 2226 2.441410 TGCCATTGCGTCCAAAGATAA 58.559 42.857 0.00 0.00 41.78 1.75
716 2805 3.660111 GCGGCAAGCTTCGGTTGT 61.660 61.111 9.31 0.00 42.18 3.32
721 2810 0.804989 GCAAGCTTCGGTTGTGCTAT 59.195 50.000 0.00 0.00 42.18 2.97
731 2820 3.259876 TCGGTTGTGCTATTAGGAACTGT 59.740 43.478 0.00 0.00 41.52 3.55
757 3208 0.896923 ATGGTCATTTGCATTGGCGT 59.103 45.000 0.00 0.00 45.35 5.68
775 3229 2.735857 GGACACGAAACGGACCCG 60.736 66.667 6.94 6.94 46.03 5.28
1982 5410 1.963338 GCTCACGCACTCCTGCTTT 60.963 57.895 0.00 0.00 41.77 3.51
2642 6115 4.562789 TCTCGATCGTTTTGCTCTGTTATG 59.437 41.667 15.94 0.00 0.00 1.90
2643 6116 4.242475 TCGATCGTTTTGCTCTGTTATGT 58.758 39.130 15.94 0.00 0.00 2.29
2645 6118 5.178623 TCGATCGTTTTGCTCTGTTATGTTT 59.821 36.000 15.94 0.00 0.00 2.83
2646 6119 5.504755 CGATCGTTTTGCTCTGTTATGTTTC 59.495 40.000 7.03 0.00 0.00 2.78
2648 6121 7.411480 CGATCGTTTTGCTCTGTTATGTTTCTA 60.411 37.037 7.03 0.00 0.00 2.10
2649 6122 7.117241 TCGTTTTGCTCTGTTATGTTTCTAG 57.883 36.000 0.00 0.00 0.00 2.43
2797 6316 5.787062 CGAATGATTGTTGCATAGCTTATCG 59.213 40.000 0.00 0.00 0.00 2.92
2799 6318 7.444629 AATGATTGTTGCATAGCTTATCGAT 57.555 32.000 2.16 2.16 0.00 3.59
2800 6319 6.232139 TGATTGTTGCATAGCTTATCGATG 57.768 37.500 8.54 0.00 0.00 3.84
2801 6320 5.990996 TGATTGTTGCATAGCTTATCGATGA 59.009 36.000 8.54 0.00 30.46 2.92
2802 6321 5.912360 TTGTTGCATAGCTTATCGATGAG 57.088 39.130 12.62 12.62 30.46 2.90
2803 6322 4.948847 TGTTGCATAGCTTATCGATGAGT 58.051 39.130 17.47 7.96 30.46 3.41
2804 6323 6.084326 TGTTGCATAGCTTATCGATGAGTA 57.916 37.500 17.47 9.66 30.46 2.59
2805 6324 5.920840 TGTTGCATAGCTTATCGATGAGTAC 59.079 40.000 17.47 3.27 30.46 2.73
2806 6325 5.966742 TGCATAGCTTATCGATGAGTACT 57.033 39.130 17.47 10.05 30.46 2.73
2807 6326 6.332735 TGCATAGCTTATCGATGAGTACTT 57.667 37.500 17.47 5.31 30.46 2.24
2808 6327 6.382608 TGCATAGCTTATCGATGAGTACTTC 58.617 40.000 17.47 6.53 30.46 3.01
2809 6328 6.207614 TGCATAGCTTATCGATGAGTACTTCT 59.792 38.462 17.47 8.79 30.46 2.85
2993 6545 6.596497 TCATCCTATGCATGCATACATACAAG 59.404 38.462 31.75 22.70 33.28 3.16
2994 6546 6.112927 TCCTATGCATGCATACATACAAGA 57.887 37.500 31.75 17.68 33.28 3.02
3064 6623 1.274703 ATCAGGCACAGGACCCGATT 61.275 55.000 0.00 0.00 0.00 3.34
3065 6624 1.746615 CAGGCACAGGACCCGATTG 60.747 63.158 0.00 0.00 0.00 2.67
3066 6625 2.224159 AGGCACAGGACCCGATTGT 61.224 57.895 0.00 0.00 0.00 2.71
3067 6626 2.040544 GGCACAGGACCCGATTGTG 61.041 63.158 7.13 7.13 43.78 3.33
3068 6627 1.003839 GCACAGGACCCGATTGTGA 60.004 57.895 14.15 0.00 43.68 3.58
3069 6628 0.392998 GCACAGGACCCGATTGTGAT 60.393 55.000 14.15 0.00 43.68 3.06
3070 6629 1.372582 CACAGGACCCGATTGTGATG 58.627 55.000 5.83 0.00 43.68 3.07
3072 6631 1.839994 ACAGGACCCGATTGTGATGAT 59.160 47.619 0.00 0.00 0.00 2.45
3074 6633 2.615447 CAGGACCCGATTGTGATGATTG 59.385 50.000 0.00 0.00 0.00 2.67
3076 6635 3.137176 AGGACCCGATTGTGATGATTGAT 59.863 43.478 0.00 0.00 0.00 2.57
3077 6636 3.499918 GGACCCGATTGTGATGATTGATC 59.500 47.826 0.00 0.00 0.00 2.92
3078 6637 4.384056 GACCCGATTGTGATGATTGATCT 58.616 43.478 0.00 0.00 31.55 2.75
3079 6638 4.132336 ACCCGATTGTGATGATTGATCTG 58.868 43.478 0.00 0.00 31.55 2.90
3080 6639 3.058432 CCCGATTGTGATGATTGATCTGC 60.058 47.826 0.00 0.00 31.55 4.26
3082 6641 4.319549 CCGATTGTGATGATTGATCTGCAG 60.320 45.833 7.63 7.63 31.55 4.41
3173 7362 5.649782 ATTGCTAACTGAATGTCTTTGGG 57.350 39.130 0.00 0.00 0.00 4.12
3196 7882 0.546598 CCCCTTTCGGTTATGGCTCT 59.453 55.000 0.00 0.00 0.00 4.09
3203 7891 3.247006 TCGGTTATGGCTCTTGAACTC 57.753 47.619 0.00 0.00 0.00 3.01
3204 7892 2.832129 TCGGTTATGGCTCTTGAACTCT 59.168 45.455 0.00 0.00 0.00 3.24
3207 7895 5.128827 TCGGTTATGGCTCTTGAACTCTTAT 59.871 40.000 0.00 0.00 0.00 1.73
3550 8405 2.115595 GATTCGTGTCTCATCGAGCAG 58.884 52.381 0.00 0.00 37.38 4.24
3615 8470 6.251549 GTTGCTGAGCTAAGTTTTAGCATAC 58.748 40.000 19.53 12.12 42.68 2.39
3634 8489 2.672651 TTGGCACAGGCACGGATG 60.673 61.111 0.00 0.00 42.39 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.039870 GGTTGACACATTTTGTTGATATGAAAA 57.960 29.630 0.00 0.00 39.17 2.29
7 8 7.282332 TGGTTGACACATTTTGTTGATATGA 57.718 32.000 0.00 0.00 39.17 2.15
122 1245 3.559655 TGGTCTGAGATTGTTGAAACACG 59.440 43.478 0.00 0.00 38.92 4.49
684 2773 1.879380 TGCCGCCATAAGCATGATTAC 59.121 47.619 5.38 0.00 44.04 1.89
716 2805 3.981071 AGTGCACAGTTCCTAATAGCA 57.019 42.857 21.04 0.00 0.00 3.49
721 2810 4.041075 TGACCATTAGTGCACAGTTCCTAA 59.959 41.667 21.04 8.02 0.00 2.69
731 2820 4.496360 CAATGCAAATGACCATTAGTGCA 58.504 39.130 18.58 18.58 44.02 4.57
757 3208 2.422591 GGGTCCGTTTCGTGTCCA 59.577 61.111 0.00 0.00 0.00 4.02
775 3229 2.743928 CAGGGCTCGAGTTGCACC 60.744 66.667 15.13 5.86 33.68 5.01
2334 5781 2.987125 GGTGGCGTAGTGGGTGAT 59.013 61.111 0.00 0.00 0.00 3.06
2642 6115 3.961408 TCCTCCATGGCTAGACTAGAAAC 59.039 47.826 13.91 3.35 35.26 2.78
2643 6116 4.265856 TCCTCCATGGCTAGACTAGAAA 57.734 45.455 13.91 0.46 35.26 2.52
2645 6118 4.477536 AATCCTCCATGGCTAGACTAGA 57.522 45.455 13.91 0.00 35.26 2.43
2646 6119 5.777732 AGTAAATCCTCCATGGCTAGACTAG 59.222 44.000 6.96 5.03 35.26 2.57
2648 6121 4.346418 CAGTAAATCCTCCATGGCTAGACT 59.654 45.833 6.96 0.85 35.26 3.24
2649 6122 4.636249 CAGTAAATCCTCCATGGCTAGAC 58.364 47.826 6.96 0.00 35.26 2.59
2797 6316 6.179504 TCAAGTCGTACAGAAGTACTCATC 57.820 41.667 0.00 0.00 46.68 2.92
2799 6318 6.206048 TGATTCAAGTCGTACAGAAGTACTCA 59.794 38.462 0.00 0.00 46.68 3.41
2800 6319 6.609533 TGATTCAAGTCGTACAGAAGTACTC 58.390 40.000 0.00 0.00 46.68 2.59
2801 6320 6.570672 TGATTCAAGTCGTACAGAAGTACT 57.429 37.500 0.00 0.00 46.68 2.73
2802 6321 7.813852 ATTGATTCAAGTCGTACAGAAGTAC 57.186 36.000 5.21 0.00 45.67 2.73
2803 6322 8.827177 AAATTGATTCAAGTCGTACAGAAGTA 57.173 30.769 5.21 0.00 0.00 2.24
2804 6323 7.730364 AAATTGATTCAAGTCGTACAGAAGT 57.270 32.000 5.21 0.00 0.00 3.01
2805 6324 7.535258 CCAAAATTGATTCAAGTCGTACAGAAG 59.465 37.037 5.21 0.00 0.00 2.85
2806 6325 7.012894 ACCAAAATTGATTCAAGTCGTACAGAA 59.987 33.333 5.21 0.00 0.00 3.02
2807 6326 6.485313 ACCAAAATTGATTCAAGTCGTACAGA 59.515 34.615 5.21 0.00 0.00 3.41
2808 6327 6.578545 CACCAAAATTGATTCAAGTCGTACAG 59.421 38.462 5.21 0.00 0.00 2.74
2809 6328 6.434596 CACCAAAATTGATTCAAGTCGTACA 58.565 36.000 5.21 0.00 0.00 2.90
2892 6412 4.099266 TGCAGGAACAAAATTAGCACAAGT 59.901 37.500 0.00 0.00 0.00 3.16
2993 6545 8.787852 AGAATCCTAAGAACTGAACAACATTTC 58.212 33.333 0.00 0.00 38.09 2.17
2994 6546 8.571336 CAGAATCCTAAGAACTGAACAACATTT 58.429 33.333 0.00 0.00 34.50 2.32
3009 6567 6.253746 CACGCTTTTCAATCAGAATCCTAAG 58.746 40.000 0.00 0.00 35.83 2.18
3064 6623 3.918294 TCCTGCAGATCAATCATCACA 57.082 42.857 17.39 0.00 33.29 3.58
3065 6624 4.386711 TCATCCTGCAGATCAATCATCAC 58.613 43.478 17.39 0.00 33.29 3.06
3066 6625 4.699925 TCATCCTGCAGATCAATCATCA 57.300 40.909 17.39 0.00 33.29 3.07
3067 6626 5.492895 AGATCATCCTGCAGATCAATCATC 58.507 41.667 17.39 4.84 42.36 2.92
3068 6627 5.506730 AGATCATCCTGCAGATCAATCAT 57.493 39.130 17.39 0.00 42.36 2.45
3069 6628 4.976540 AGATCATCCTGCAGATCAATCA 57.023 40.909 17.39 0.00 42.36 2.57
3070 6629 5.049336 CACAAGATCATCCTGCAGATCAATC 60.049 44.000 17.39 12.45 42.36 2.67
3072 6631 4.080751 TCACAAGATCATCCTGCAGATCAA 60.081 41.667 17.39 0.00 42.36 2.57
3074 6633 4.069300 TCACAAGATCATCCTGCAGATC 57.931 45.455 17.39 10.48 40.68 2.75
3076 6635 3.433173 CCATCACAAGATCATCCTGCAGA 60.433 47.826 17.39 1.21 30.20 4.26
3077 6636 2.879026 CCATCACAAGATCATCCTGCAG 59.121 50.000 6.78 6.78 30.20 4.41
3078 6637 2.240414 ACCATCACAAGATCATCCTGCA 59.760 45.455 0.00 0.00 30.20 4.41
3079 6638 2.928334 ACCATCACAAGATCATCCTGC 58.072 47.619 0.00 0.00 30.20 4.85
3080 6639 4.520179 TCAACCATCACAAGATCATCCTG 58.480 43.478 0.00 0.00 30.20 3.86
3082 6641 5.238868 CAGATCAACCATCACAAGATCATCC 59.761 44.000 0.00 0.00 38.00 3.51
3203 7891 7.551974 AGATCAGAACAAGATGAACACCATAAG 59.448 37.037 0.00 0.00 35.17 1.73
3204 7892 7.335171 CAGATCAGAACAAGATGAACACCATAA 59.665 37.037 0.00 0.00 35.17 1.90
3207 7895 4.999311 CAGATCAGAACAAGATGAACACCA 59.001 41.667 0.00 0.00 0.00 4.17
3450 8285 4.995487 GGTAAAGTCAGGTTCTGTAGTTGG 59.005 45.833 0.00 0.00 32.61 3.77
3550 8405 2.287608 CCAAGAACAAGCTCCGGAAAAC 60.288 50.000 5.23 0.00 0.00 2.43
3615 8470 3.925630 ATCCGTGCCTGTGCCAAGG 62.926 63.158 0.00 0.00 40.63 3.61
3634 8489 2.026014 CGGCAGTGTGTTTGTGGC 59.974 61.111 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.