Multiple sequence alignment - TraesCS5D01G049500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G049500 chr5D 100.000 2276 0 0 1 2276 47038980 47041255 0.000000e+00 4204.0
1 TraesCS5D01G049500 chr5D 97.935 920 19 0 1 920 37016855 37017774 0.000000e+00 1594.0
2 TraesCS5D01G049500 chr2B 95.542 1301 54 1 1 1301 412397217 412398513 0.000000e+00 2078.0
3 TraesCS5D01G049500 chr5B 94.696 1301 69 0 1 1301 508878458 508879758 0.000000e+00 2021.0
4 TraesCS5D01G049500 chr1A 93.448 1221 80 0 1 1221 20199342 20198122 0.000000e+00 1812.0
5 TraesCS5D01G049500 chr5A 90.776 1301 120 0 1 1301 646509293 646507993 0.000000e+00 1738.0
6 TraesCS5D01G049500 chr5A 85.516 649 45 15 1331 1930 37843895 37844543 1.150000e-177 632.0
7 TraesCS5D01G049500 chr5A 89.892 277 26 1 1998 2274 37844560 37844834 2.780000e-94 355.0
8 TraesCS5D01G049500 chr5A 77.957 186 27 7 1576 1759 851692 851865 1.110000e-18 104.0
9 TraesCS5D01G049500 chr5A 84.466 103 13 2 1619 1720 422097533 422097633 5.170000e-17 99.0
10 TraesCS5D01G049500 chr1B 93.063 1182 78 1 118 1299 613718297 613717120 0.000000e+00 1725.0
11 TraesCS5D01G049500 chr1B 81.513 119 20 2 1381 1497 542764527 542764409 1.860000e-16 97.1
12 TraesCS5D01G049500 chr2A 88.479 1302 146 2 4 1302 59067946 59066646 0.000000e+00 1570.0
13 TraesCS5D01G049500 chr2A 86.441 118 13 3 1361 1476 654868309 654868425 2.370000e-25 126.0
14 TraesCS5D01G049500 chr2A 87.619 105 11 2 1619 1721 216461113 216461009 1.100000e-23 121.0
15 TraesCS5D01G049500 chr6D 85.287 1305 185 7 1 1301 469489602 469490903 0.000000e+00 1339.0
16 TraesCS5D01G049500 chr6D 85.111 1303 189 5 1 1301 469508412 469509711 0.000000e+00 1327.0
17 TraesCS5D01G049500 chr4D 85.520 221 26 5 1323 1538 31803134 31802915 2.270000e-55 226.0
18 TraesCS5D01G049500 chr4D 93.182 44 2 1 1434 1476 420146685 420146728 1.890000e-06 63.9
19 TraesCS5D01G049500 chr3D 84.906 159 20 3 1319 1476 300961028 300961183 8.420000e-35 158.0
20 TraesCS5D01G049500 chr3D 89.000 100 9 2 1623 1721 474484708 474484806 3.070000e-24 122.0
21 TraesCS5D01G049500 chr3D 85.849 106 11 4 1619 1721 48280875 48280979 2.390000e-20 110.0
22 TraesCS5D01G049500 chr7A 84.962 133 14 5 1350 1479 48278283 48278154 1.830000e-26 130.0
23 TraesCS5D01G049500 chr7D 85.470 117 14 3 1362 1476 428038218 428038103 3.970000e-23 119.0
24 TraesCS5D01G049500 chr7D 83.654 104 14 2 1619 1721 161161707 161161606 6.690000e-16 95.3
25 TraesCS5D01G049500 chr1D 82.270 141 21 4 1584 1721 428599974 428600113 3.970000e-23 119.0
26 TraesCS5D01G049500 chr7B 84.536 97 13 2 1381 1476 677427271 677427176 6.690000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G049500 chr5D 47038980 47041255 2275 False 4204.0 4204 100.000 1 2276 1 chr5D.!!$F2 2275
1 TraesCS5D01G049500 chr5D 37016855 37017774 919 False 1594.0 1594 97.935 1 920 1 chr5D.!!$F1 919
2 TraesCS5D01G049500 chr2B 412397217 412398513 1296 False 2078.0 2078 95.542 1 1301 1 chr2B.!!$F1 1300
3 TraesCS5D01G049500 chr5B 508878458 508879758 1300 False 2021.0 2021 94.696 1 1301 1 chr5B.!!$F1 1300
4 TraesCS5D01G049500 chr1A 20198122 20199342 1220 True 1812.0 1812 93.448 1 1221 1 chr1A.!!$R1 1220
5 TraesCS5D01G049500 chr5A 646507993 646509293 1300 True 1738.0 1738 90.776 1 1301 1 chr5A.!!$R1 1300
6 TraesCS5D01G049500 chr5A 37843895 37844834 939 False 493.5 632 87.704 1331 2274 2 chr5A.!!$F3 943
7 TraesCS5D01G049500 chr1B 613717120 613718297 1177 True 1725.0 1725 93.063 118 1299 1 chr1B.!!$R2 1181
8 TraesCS5D01G049500 chr2A 59066646 59067946 1300 True 1570.0 1570 88.479 4 1302 1 chr2A.!!$R1 1298
9 TraesCS5D01G049500 chr6D 469489602 469490903 1301 False 1339.0 1339 85.287 1 1301 1 chr6D.!!$F1 1300
10 TraesCS5D01G049500 chr6D 469508412 469509711 1299 False 1327.0 1327 85.111 1 1301 1 chr6D.!!$F2 1300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.111446 TTTCTGAAACCGATGGGGCA 59.889 50.0 0.0 0.0 40.62 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1558 0.107361 GGGGGAATTCGTTCCGTCAT 60.107 55.0 0.0 0.0 42.02 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.111446 TTTCTGAAACCGATGGGGCA 59.889 50.000 0.00 0.00 40.62 5.36
66 67 0.171455 CACTAGCCACGGTCTCAGAC 59.829 60.000 0.00 0.00 0.00 3.51
182 183 2.224426 ACAGCAACGGTGGTCAAGATTA 60.224 45.455 0.00 0.00 35.13 1.75
186 187 5.123186 CAGCAACGGTGGTCAAGATTATTTA 59.877 40.000 0.00 0.00 31.53 1.40
220 221 7.068839 CCTTAGAGAAATCTGGCAACTACTCTA 59.931 40.741 11.31 11.31 35.55 2.43
614 615 0.318441 CAGTTCGCAGAGGAAGACCA 59.682 55.000 0.00 0.00 38.43 4.02
722 723 3.703052 GCCCTGAAGTGGATTCATGAAAT 59.297 43.478 13.09 1.06 46.71 2.17
932 933 0.878961 GGTGTCACTGACCCGTTCAC 60.879 60.000 6.72 0.00 0.00 3.18
981 984 1.996292 TGATCTTCGCTCAACTTCGG 58.004 50.000 0.00 0.00 0.00 4.30
1260 1266 5.753921 CCTAAGAACGGATTGTAACCTCATC 59.246 44.000 0.00 0.00 0.00 2.92
1318 1324 4.481368 AAAAGGTACATCTGCGGTATCA 57.519 40.909 0.00 0.00 0.00 2.15
1319 1325 3.735237 AAGGTACATCTGCGGTATCAG 57.265 47.619 0.00 0.00 35.46 2.90
1320 1326 2.945456 AGGTACATCTGCGGTATCAGA 58.055 47.619 0.00 0.00 45.97 3.27
1321 1327 2.887783 AGGTACATCTGCGGTATCAGAG 59.112 50.000 0.00 0.00 45.22 3.35
1322 1328 2.608261 GGTACATCTGCGGTATCAGAGC 60.608 54.545 0.00 0.00 45.22 4.09
1323 1329 1.114627 ACATCTGCGGTATCAGAGCA 58.885 50.000 0.00 0.00 45.22 4.26
1324 1330 1.690893 ACATCTGCGGTATCAGAGCAT 59.309 47.619 0.00 0.00 45.22 3.79
1325 1331 2.288702 ACATCTGCGGTATCAGAGCATC 60.289 50.000 0.00 0.00 45.22 3.91
1346 1352 5.840243 TCTCCGATTGATGATGCAAATTT 57.160 34.783 0.00 0.00 0.00 1.82
1421 1441 5.220710 GGTAACTCCAGCAGATGATGTAT 57.779 43.478 0.00 0.00 35.97 2.29
1428 1448 5.554070 TCCAGCAGATGATGTATATTGGTG 58.446 41.667 0.00 0.00 34.38 4.17
1438 1458 9.831737 GATGATGTATATTGGTGATGTAAAAGC 57.168 33.333 0.00 0.00 0.00 3.51
1440 1460 6.055231 TGTATATTGGTGATGTAAAAGCGC 57.945 37.500 0.00 0.00 0.00 5.92
1485 1505 7.872113 ATTTGATGATGTAAACCTCCTTCTC 57.128 36.000 0.00 0.00 0.00 2.87
1488 1508 4.826274 TGATGTAAACCTCCTTCTCCAG 57.174 45.455 0.00 0.00 0.00 3.86
1506 1526 8.592105 TTCTCCAGCAAATAATTTTGTCAAAG 57.408 30.769 0.00 0.00 43.43 2.77
1508 1528 8.420222 TCTCCAGCAAATAATTTTGTCAAAGAA 58.580 29.630 0.00 0.00 43.43 2.52
1538 1558 2.031465 GTGGAAGAAACCGGCCGA 59.969 61.111 30.73 0.00 0.00 5.54
1561 1589 4.534401 GAACGAATTCCCCCTCGG 57.466 61.111 0.00 0.00 39.38 4.63
1582 1610 4.933064 GGCTCATCTCGGCCGTCG 62.933 72.222 27.15 17.65 38.91 5.12
1612 1640 1.138859 TGACATCCATAGCCCAAGTCG 59.861 52.381 0.00 0.00 0.00 4.18
1619 1647 3.023832 CCATAGCCCAAGTCGGAATTTT 58.976 45.455 0.00 0.00 36.56 1.82
1625 1653 2.417243 CCCAAGTCGGAATTTTGATGCC 60.417 50.000 0.00 0.00 36.56 4.40
1668 1696 7.334421 GCAAAACACTCTCTTAGATATGTCCAA 59.666 37.037 0.00 0.00 0.00 3.53
1713 1742 9.890629 TCATGCACAATTAATTTACTCTCTAGT 57.109 29.630 0.00 0.00 39.91 2.57
1889 1943 2.740447 CGAAACTAGTGTAGCCCAAACC 59.260 50.000 0.00 0.00 0.00 3.27
1912 1966 1.968540 GCACACAGGCCACTTCCTC 60.969 63.158 5.01 0.00 33.25 3.71
1919 1973 2.979678 ACAGGCCACTTCCTCTCTTTTA 59.020 45.455 5.01 0.00 33.25 1.52
1922 1976 4.637977 CAGGCCACTTCCTCTCTTTTATTC 59.362 45.833 5.01 0.00 33.25 1.75
1923 1977 4.289672 AGGCCACTTCCTCTCTTTTATTCA 59.710 41.667 5.01 0.00 0.00 2.57
1924 1978 5.044550 AGGCCACTTCCTCTCTTTTATTCAT 60.045 40.000 5.01 0.00 0.00 2.57
1928 1982 8.739972 GCCACTTCCTCTCTTTTATTCATTTTA 58.260 33.333 0.00 0.00 0.00 1.52
2011 2065 6.605471 AACCAGGGATTTTATTCCAAACTC 57.395 37.500 0.00 0.00 37.53 3.01
2039 2093 6.419484 TGTCAGGGATACAAATGATATCGT 57.581 37.500 0.00 0.00 39.74 3.73
2051 2105 6.483307 ACAAATGATATCGTGTACATTCCCTG 59.517 38.462 0.00 0.00 32.84 4.45
2056 2110 1.024579 CGTGTACATTCCCTGGCCAC 61.025 60.000 0.00 0.00 0.00 5.01
2062 2116 0.323633 CATTCCCTGGCCACACATGA 60.324 55.000 0.00 0.00 0.00 3.07
2065 2119 2.347114 CCTGGCCACACATGACGA 59.653 61.111 0.00 0.00 0.00 4.20
2068 2122 3.118454 GGCCACACATGACGACCG 61.118 66.667 0.00 0.00 0.00 4.79
2120 2174 5.959512 ACCTATGAGCCTCACTATTAGACT 58.040 41.667 0.00 0.00 0.00 3.24
2121 2175 6.007703 ACCTATGAGCCTCACTATTAGACTC 58.992 44.000 0.00 0.00 0.00 3.36
2124 2178 3.205507 TGAGCCTCACTATTAGACTCCCT 59.794 47.826 0.00 0.00 0.00 4.20
2126 2180 4.993028 AGCCTCACTATTAGACTCCCTAG 58.007 47.826 0.00 0.00 0.00 3.02
2136 2190 7.839705 ACTATTAGACTCCCTAGTTTCATGACA 59.160 37.037 0.00 0.00 35.56 3.58
2165 2219 1.130749 CGTCATCGAACTCGTTCCTCT 59.869 52.381 4.36 0.00 40.80 3.69
2173 2227 3.318886 GAACTCGTTCCTCTTGGTCTTC 58.681 50.000 0.00 0.00 33.64 2.87
2204 2258 1.402968 AGATTGGCGCATAAACAGCAG 59.597 47.619 10.83 0.00 0.00 4.24
2233 2287 2.540228 GCCGGCAAACCCTATACGC 61.540 63.158 24.80 0.00 0.00 4.42
2236 2290 2.540228 GGCAAACCCTATACGCCGC 61.540 63.158 0.00 0.00 32.14 6.53
2238 2292 1.519898 CAAACCCTATACGCCGCGT 60.520 57.895 23.72 23.72 44.35 6.01
2241 2295 1.799258 AACCCTATACGCCGCGTAGG 61.799 60.000 27.79 25.09 45.45 3.18
2243 2297 1.656441 CCTATACGCCGCGTAGGTT 59.344 57.895 27.79 15.71 45.45 3.50
2261 2315 4.208686 GCTGCCTAGCGCGGTAGT 62.209 66.667 35.23 0.00 46.50 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.219343 TGCCTGTGTAATCATCTATCAGG 57.781 43.478 0.00 0.00 42.37 3.86
130 131 7.885399 GGGTATATTGAGGATAGCTTCAACATT 59.115 37.037 7.76 0.00 42.01 2.71
182 183 4.796110 TTCTCTAAGGCCCATGCTAAAT 57.204 40.909 0.00 0.00 37.74 1.40
186 187 2.782341 AGATTTCTCTAAGGCCCATGCT 59.218 45.455 0.00 0.00 37.74 3.79
614 615 3.639672 TGATCATGACAATCCTGCAGT 57.360 42.857 13.81 0.00 0.00 4.40
722 723 2.505819 GGAAGGTCCAGAATAGCCAAGA 59.494 50.000 0.00 0.00 36.28 3.02
932 933 3.365364 CCGGAAAGCTAAAAGTTCTGCAG 60.365 47.826 7.63 7.63 0.00 4.41
981 984 0.034337 TTACCACGTGTGAGAAGCCC 59.966 55.000 15.65 0.00 0.00 5.19
1029 1032 1.954146 GCCGCGCGATTTCCAGATA 60.954 57.895 34.63 0.00 0.00 1.98
1260 1266 8.964476 TTTAGGAGCTTTATTGATCAAGTAGG 57.036 34.615 14.54 5.90 0.00 3.18
1302 1308 2.034685 TGCTCTGATACCGCAGATGTAC 59.965 50.000 0.00 0.00 43.43 2.90
1303 1309 2.306847 TGCTCTGATACCGCAGATGTA 58.693 47.619 0.00 0.00 43.43 2.29
1304 1310 1.114627 TGCTCTGATACCGCAGATGT 58.885 50.000 0.00 0.00 43.43 3.06
1305 1311 2.029200 AGATGCTCTGATACCGCAGATG 60.029 50.000 0.00 0.00 43.43 2.90
1306 1312 2.230992 GAGATGCTCTGATACCGCAGAT 59.769 50.000 0.00 0.00 43.43 2.90
1307 1313 1.611006 GAGATGCTCTGATACCGCAGA 59.389 52.381 0.00 0.00 42.31 4.26
1308 1314 1.336702 GGAGATGCTCTGATACCGCAG 60.337 57.143 0.00 0.00 37.06 5.18
1309 1315 0.676184 GGAGATGCTCTGATACCGCA 59.324 55.000 0.00 0.00 38.14 5.69
1310 1316 0.387878 CGGAGATGCTCTGATACCGC 60.388 60.000 0.00 0.00 39.05 5.68
1311 1317 1.239347 TCGGAGATGCTCTGATACCG 58.761 55.000 1.96 0.00 40.49 4.02
1317 1323 3.382048 TCATCAATCGGAGATGCTCTG 57.618 47.619 7.49 0.00 45.12 3.35
1318 1324 3.927854 CATCATCAATCGGAGATGCTCT 58.072 45.455 7.49 0.00 45.12 4.09
1322 1328 4.823790 TTTGCATCATCAATCGGAGATG 57.176 40.909 0.00 0.00 45.12 2.90
1323 1329 6.040054 TCAAATTTGCATCATCAATCGGAGAT 59.960 34.615 13.54 0.00 45.12 2.75
1324 1330 5.357596 TCAAATTTGCATCATCAATCGGAGA 59.642 36.000 13.54 0.00 45.75 3.71
1325 1331 5.584442 TCAAATTTGCATCATCAATCGGAG 58.416 37.500 13.54 0.00 0.00 4.63
1326 1332 5.579564 TCAAATTTGCATCATCAATCGGA 57.420 34.783 13.54 0.00 0.00 4.55
1327 1333 6.037726 TCTTCAAATTTGCATCATCAATCGG 58.962 36.000 13.54 0.00 0.00 4.18
1328 1334 7.222031 ACATCTTCAAATTTGCATCATCAATCG 59.778 33.333 13.54 0.00 0.00 3.34
1329 1335 8.328146 CACATCTTCAAATTTGCATCATCAATC 58.672 33.333 13.54 0.00 0.00 2.67
1394 1400 4.985538 TCATCTGCTGGAGTTACCTTTTT 58.014 39.130 0.00 0.00 39.86 1.94
1409 1429 8.552083 TTACATCACCAATATACATCATCTGC 57.448 34.615 0.00 0.00 0.00 4.26
1421 1441 4.457603 AGTTGCGCTTTTACATCACCAATA 59.542 37.500 9.73 0.00 0.00 1.90
1428 1448 3.552604 TTGGAGTTGCGCTTTTACATC 57.447 42.857 9.73 0.00 0.00 3.06
1438 1458 8.484641 AATATACATCATCTATTGGAGTTGCG 57.515 34.615 0.00 0.00 0.00 4.85
1506 1526 2.380084 TCCACCTCGCATGTAACTTC 57.620 50.000 0.00 0.00 0.00 3.01
1508 1528 1.899814 TCTTCCACCTCGCATGTAACT 59.100 47.619 0.00 0.00 0.00 2.24
1538 1558 0.107361 GGGGGAATTCGTTCCGTCAT 60.107 55.000 0.00 0.00 42.02 3.06
1544 1564 0.826062 TACCGAGGGGGAATTCGTTC 59.174 55.000 0.00 0.00 39.97 3.95
1546 1566 1.047034 CCTACCGAGGGGGAATTCGT 61.047 60.000 0.00 0.00 39.48 3.85
1561 1589 2.737830 GGCCGAGATGAGCCCTAC 59.262 66.667 0.00 0.00 43.76 3.18
1582 1610 5.703130 GGGCTATGGATGTCAAGATTAACTC 59.297 44.000 0.00 0.00 0.00 3.01
1586 1614 5.132648 ACTTGGGCTATGGATGTCAAGATTA 59.867 40.000 0.00 0.00 36.45 1.75
1625 1653 3.793797 TTGCTCAGATTGCCATTGATG 57.206 42.857 0.00 0.00 0.00 3.07
1633 1661 3.501445 AGAGAGTGTTTTGCTCAGATTGC 59.499 43.478 0.00 0.00 35.55 3.56
1634 1662 5.686159 AAGAGAGTGTTTTGCTCAGATTG 57.314 39.130 0.00 0.00 35.55 2.67
1639 1667 7.615403 ACATATCTAAGAGAGTGTTTTGCTCA 58.385 34.615 0.00 0.00 35.55 4.26
1640 1668 7.223777 GGACATATCTAAGAGAGTGTTTTGCTC 59.776 40.741 0.00 0.00 30.38 4.26
1769 1823 8.970691 ATGTGTTTTGTAGCAATTTCTGATAC 57.029 30.769 0.00 0.00 45.41 2.24
1785 1839 5.794448 GCAGTTTTTGTTCCAATGTGTTTTG 59.206 36.000 0.00 0.00 0.00 2.44
1828 1882 7.806149 TTGTCTTTCTCGTTTTTCTTTTTCC 57.194 32.000 0.00 0.00 0.00 3.13
1855 1909 1.304134 GTTTCGGCCCAGGACCAAT 60.304 57.895 0.00 0.00 0.00 3.16
1901 1955 4.589908 TGAATAAAAGAGAGGAAGTGGCC 58.410 43.478 0.00 0.00 0.00 5.36
1929 1983 9.840427 CGATTCTGCCTTAAAAGAAAAGAATAA 57.160 29.630 11.30 0.00 36.09 1.40
1930 1984 8.458843 CCGATTCTGCCTTAAAAGAAAAGAATA 58.541 33.333 11.30 0.00 36.09 1.75
1931 1985 7.315890 CCGATTCTGCCTTAAAAGAAAAGAAT 58.684 34.615 11.20 11.20 36.09 2.40
1932 1986 6.677913 CCGATTCTGCCTTAAAAGAAAAGAA 58.322 36.000 0.00 0.00 36.09 2.52
1933 1987 5.335661 GCCGATTCTGCCTTAAAAGAAAAGA 60.336 40.000 0.00 0.00 36.09 2.52
1934 1988 4.859245 GCCGATTCTGCCTTAAAAGAAAAG 59.141 41.667 0.00 0.00 36.09 2.27
1935 1989 4.522789 AGCCGATTCTGCCTTAAAAGAAAA 59.477 37.500 0.00 0.00 36.09 2.29
1936 1990 4.079253 AGCCGATTCTGCCTTAAAAGAAA 58.921 39.130 0.00 0.00 36.09 2.52
1937 1991 3.686016 AGCCGATTCTGCCTTAAAAGAA 58.314 40.909 0.00 0.00 36.87 2.52
1938 1992 3.350219 AGCCGATTCTGCCTTAAAAGA 57.650 42.857 0.00 0.00 0.00 2.52
1939 1993 3.440173 TGAAGCCGATTCTGCCTTAAAAG 59.560 43.478 0.00 0.00 38.83 2.27
1940 1994 3.417101 TGAAGCCGATTCTGCCTTAAAA 58.583 40.909 0.00 0.00 38.83 1.52
1941 1995 3.009723 CTGAAGCCGATTCTGCCTTAAA 58.990 45.455 0.00 0.00 38.83 1.52
1942 1996 2.632377 CTGAAGCCGATTCTGCCTTAA 58.368 47.619 0.00 0.00 38.83 1.85
1943 1997 2.315925 CTGAAGCCGATTCTGCCTTA 57.684 50.000 0.00 0.00 38.83 2.69
1944 1998 3.165606 CTGAAGCCGATTCTGCCTT 57.834 52.632 0.00 0.00 38.83 4.35
1945 1999 4.950479 CTGAAGCCGATTCTGCCT 57.050 55.556 0.00 0.00 38.83 4.75
1977 2031 8.959676 ATAAAATCCCTGGTTACACCTAAAAA 57.040 30.769 0.00 0.00 39.58 1.94
1978 2032 8.959676 AATAAAATCCCTGGTTACACCTAAAA 57.040 30.769 0.00 0.00 39.58 1.52
1979 2033 7.616542 GGAATAAAATCCCTGGTTACACCTAAA 59.383 37.037 0.00 0.00 34.66 1.85
1980 2034 7.120716 GGAATAAAATCCCTGGTTACACCTAA 58.879 38.462 0.00 0.00 34.66 2.69
1981 2035 6.217900 TGGAATAAAATCCCTGGTTACACCTA 59.782 38.462 0.00 0.00 37.67 3.08
1982 2036 5.015817 TGGAATAAAATCCCTGGTTACACCT 59.984 40.000 0.00 0.00 37.67 4.00
1983 2037 5.265989 TGGAATAAAATCCCTGGTTACACC 58.734 41.667 0.00 0.00 38.82 4.16
1984 2038 6.844097 TTGGAATAAAATCCCTGGTTACAC 57.156 37.500 0.00 0.00 38.82 2.90
1985 2039 7.013834 AGTTTGGAATAAAATCCCTGGTTACA 58.986 34.615 0.00 0.00 38.82 2.41
1986 2040 7.177744 TGAGTTTGGAATAAAATCCCTGGTTAC 59.822 37.037 0.00 0.00 38.82 2.50
1987 2041 7.242359 TGAGTTTGGAATAAAATCCCTGGTTA 58.758 34.615 0.00 0.00 38.82 2.85
1988 2042 6.081356 TGAGTTTGGAATAAAATCCCTGGTT 58.919 36.000 0.00 0.00 38.82 3.67
1989 2043 5.650283 TGAGTTTGGAATAAAATCCCTGGT 58.350 37.500 0.00 0.00 38.82 4.00
1990 2044 6.603940 TTGAGTTTGGAATAAAATCCCTGG 57.396 37.500 0.00 0.00 38.82 4.45
1991 2045 8.938906 CATTTTGAGTTTGGAATAAAATCCCTG 58.061 33.333 0.00 0.00 38.82 4.45
1992 2046 8.659527 ACATTTTGAGTTTGGAATAAAATCCCT 58.340 29.630 0.00 0.00 38.82 4.20
1993 2047 8.846943 ACATTTTGAGTTTGGAATAAAATCCC 57.153 30.769 0.00 0.00 38.82 3.85
1994 2048 9.487790 TGACATTTTGAGTTTGGAATAAAATCC 57.512 29.630 0.00 0.00 40.10 3.01
1996 2050 9.492973 CCTGACATTTTGAGTTTGGAATAAAAT 57.507 29.630 0.00 0.00 32.82 1.82
1997 2051 7.930865 CCCTGACATTTTGAGTTTGGAATAAAA 59.069 33.333 0.00 0.00 0.00 1.52
1998 2052 7.288852 TCCCTGACATTTTGAGTTTGGAATAAA 59.711 33.333 0.00 0.00 0.00 1.40
1999 2053 6.780031 TCCCTGACATTTTGAGTTTGGAATAA 59.220 34.615 0.00 0.00 0.00 1.40
2000 2054 6.310941 TCCCTGACATTTTGAGTTTGGAATA 58.689 36.000 0.00 0.00 0.00 1.75
2005 2059 6.573664 TGTATCCCTGACATTTTGAGTTTG 57.426 37.500 0.00 0.00 0.00 2.93
2011 2065 9.903682 GATATCATTTGTATCCCTGACATTTTG 57.096 33.333 0.00 0.00 0.00 2.44
2039 2093 0.037590 GTGTGGCCAGGGAATGTACA 59.962 55.000 5.11 0.00 0.00 2.90
2051 2105 3.118454 CGGTCGTCATGTGTGGCC 61.118 66.667 0.00 0.00 0.00 5.36
2065 2119 1.935300 GCATCAACTCTTGACGTCGGT 60.935 52.381 11.62 4.36 43.48 4.69
2068 2122 1.127582 GCTGCATCAACTCTTGACGTC 59.872 52.381 9.11 9.11 43.48 4.34
2072 2126 2.555325 CAAAGGCTGCATCAACTCTTGA 59.445 45.455 0.50 0.00 45.01 3.02
2087 2141 1.950216 GGCTCATAGGTTAGCAAAGGC 59.050 52.381 0.00 0.00 40.61 4.35
2105 2159 4.732065 ACTAGGGAGTCTAATAGTGAGGC 58.268 47.826 0.00 0.00 0.00 4.70
2120 2174 5.825593 ACTTTCTGTCATGAAACTAGGGA 57.174 39.130 0.00 0.00 33.11 4.20
2121 2175 6.090898 CGTTACTTTCTGTCATGAAACTAGGG 59.909 42.308 0.00 0.00 33.11 3.53
2124 2178 7.204604 TGACGTTACTTTCTGTCATGAAACTA 58.795 34.615 0.00 0.00 36.50 2.24
2126 2180 6.281848 TGACGTTACTTTCTGTCATGAAAC 57.718 37.500 0.00 0.00 36.50 2.78
2136 2190 4.156915 CGAGTTCGATGACGTTACTTTCT 58.843 43.478 0.00 0.00 43.02 2.52
2165 2219 4.290711 TCTTGCATGAGATGAAGACCAA 57.709 40.909 0.00 0.00 0.00 3.67
2173 2227 1.599667 GCGCCAATCTTGCATGAGATG 60.600 52.381 8.40 9.23 36.53 2.90
2221 2275 0.031178 CTACGCGGCGTATAGGGTTT 59.969 55.000 32.24 8.58 41.53 3.27
2233 2287 3.365291 TAGGCAGCAACCTACGCGG 62.365 63.158 12.47 0.00 41.50 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.