Multiple sequence alignment - TraesCS5D01G049000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G049000 chr5D 100.000 2888 0 0 1 2888 46733364 46730477 0.000000e+00 5334.0
1 TraesCS5D01G049000 chr5D 84.044 1266 146 28 578 1826 47280636 47281862 0.000000e+00 1168.0
2 TraesCS5D01G049000 chr5D 83.010 1236 183 17 612 1834 48315030 48313809 0.000000e+00 1094.0
3 TraesCS5D01G049000 chr5D 80.255 1413 168 58 653 2018 46606198 46607546 0.000000e+00 961.0
4 TraesCS5D01G049000 chr5D 81.679 1179 186 18 654 1826 46847550 46846396 0.000000e+00 953.0
5 TraesCS5D01G049000 chr5D 80.443 813 114 26 1025 1834 47088337 47087567 1.930000e-161 579.0
6 TraesCS5D01G049000 chr5D 86.830 448 48 5 1387 1833 47916470 47916907 9.300000e-135 490.0
7 TraesCS5D01G049000 chr5D 82.424 330 55 3 1041 1367 48032280 48032609 4.710000e-73 285.0
8 TraesCS5D01G049000 chr5B 94.198 1758 55 17 313 2023 48931641 48929884 0.000000e+00 2638.0
9 TraesCS5D01G049000 chr5B 84.494 1206 129 34 578 1756 50226646 50227820 0.000000e+00 1138.0
10 TraesCS5D01G049000 chr5B 83.252 1224 164 28 612 1815 50530129 50531331 0.000000e+00 1086.0
11 TraesCS5D01G049000 chr5B 83.156 1223 163 29 612 1815 51062264 51061066 0.000000e+00 1077.0
12 TraesCS5D01G049000 chr5B 81.507 1168 186 18 654 1815 48980946 48979803 0.000000e+00 933.0
13 TraesCS5D01G049000 chr5B 81.633 735 122 7 999 1724 50003376 50004106 5.330000e-167 597.0
14 TraesCS5D01G049000 chr5B 98.077 52 1 0 208 259 48931781 48931730 1.100000e-14 91.6
15 TraesCS5D01G049000 chr5A 81.588 1146 176 19 701 1834 38055673 38054551 0.000000e+00 915.0
16 TraesCS5D01G049000 chr5A 80.931 902 147 15 916 1815 37780628 37779750 0.000000e+00 689.0
17 TraesCS5D01G049000 chr7A 87.063 572 42 14 2295 2841 733461857 733461293 4.090000e-173 617.0
18 TraesCS5D01G049000 chr4B 95.349 86 3 1 123 207 167393828 167393913 5.020000e-28 135.0
19 TraesCS5D01G049000 chr2B 90.099 101 9 1 118 217 181215087 181215187 2.340000e-26 130.0
20 TraesCS5D01G049000 chr1A 92.308 91 6 1 124 213 548488448 548488358 8.400000e-26 128.0
21 TraesCS5D01G049000 chr7D 92.222 90 5 2 120 207 568025366 568025455 3.020000e-25 126.0
22 TraesCS5D01G049000 chr6A 91.398 93 6 2 124 215 617537561 617537652 3.020000e-25 126.0
23 TraesCS5D01G049000 chr1B 91.398 93 6 2 120 210 348322783 348322691 3.020000e-25 126.0
24 TraesCS5D01G049000 chr4D 90.625 96 6 3 120 212 467435662 467435757 1.090000e-24 124.0
25 TraesCS5D01G049000 chr3D 87.500 104 12 1 127 230 362355938 362356040 5.060000e-23 119.0
26 TraesCS5D01G049000 chr7B 86.792 106 12 2 119 223 697607633 697607737 1.820000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G049000 chr5D 46730477 46733364 2887 True 5334.0 5334 100.0000 1 2888 1 chr5D.!!$R1 2887
1 TraesCS5D01G049000 chr5D 47280636 47281862 1226 False 1168.0 1168 84.0440 578 1826 1 chr5D.!!$F2 1248
2 TraesCS5D01G049000 chr5D 48313809 48315030 1221 True 1094.0 1094 83.0100 612 1834 1 chr5D.!!$R4 1222
3 TraesCS5D01G049000 chr5D 46606198 46607546 1348 False 961.0 961 80.2550 653 2018 1 chr5D.!!$F1 1365
4 TraesCS5D01G049000 chr5D 46846396 46847550 1154 True 953.0 953 81.6790 654 1826 1 chr5D.!!$R2 1172
5 TraesCS5D01G049000 chr5D 47087567 47088337 770 True 579.0 579 80.4430 1025 1834 1 chr5D.!!$R3 809
6 TraesCS5D01G049000 chr5B 48929884 48931781 1897 True 1364.8 2638 96.1375 208 2023 2 chr5B.!!$R3 1815
7 TraesCS5D01G049000 chr5B 50226646 50227820 1174 False 1138.0 1138 84.4940 578 1756 1 chr5B.!!$F2 1178
8 TraesCS5D01G049000 chr5B 50530129 50531331 1202 False 1086.0 1086 83.2520 612 1815 1 chr5B.!!$F3 1203
9 TraesCS5D01G049000 chr5B 51061066 51062264 1198 True 1077.0 1077 83.1560 612 1815 1 chr5B.!!$R2 1203
10 TraesCS5D01G049000 chr5B 48979803 48980946 1143 True 933.0 933 81.5070 654 1815 1 chr5B.!!$R1 1161
11 TraesCS5D01G049000 chr5B 50003376 50004106 730 False 597.0 597 81.6330 999 1724 1 chr5B.!!$F1 725
12 TraesCS5D01G049000 chr5A 38054551 38055673 1122 True 915.0 915 81.5880 701 1834 1 chr5A.!!$R2 1133
13 TraesCS5D01G049000 chr5A 37779750 37780628 878 True 689.0 689 80.9310 916 1815 1 chr5A.!!$R1 899
14 TraesCS5D01G049000 chr7A 733461293 733461857 564 True 617.0 617 87.0630 2295 2841 1 chr7A.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.03438 CTCCGTGGTAGAGGAGTGGA 60.034 60.0 3.49 0.0 46.68 4.02 F
93 94 0.03438 TCCGTGGTAGAGGAGTGGAG 60.034 60.0 0.00 0.0 31.95 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1822 1.659794 GTTGTGCATGTCCACCACC 59.340 57.895 0.00 0.0 34.85 4.61 R
2069 2231 2.044793 TGGTGGGAAGTTCATCTCCT 57.955 50.000 5.01 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.112475 CGAAGCGGAGTGACATCTAG 57.888 55.000 0.00 0.00 0.00 2.43
30 31 1.402259 CGAAGCGGAGTGACATCTAGT 59.598 52.381 0.00 0.00 0.00 2.57
31 32 2.159366 CGAAGCGGAGTGACATCTAGTT 60.159 50.000 0.00 0.00 0.00 2.24
32 33 2.949451 AGCGGAGTGACATCTAGTTG 57.051 50.000 0.00 0.00 0.00 3.16
33 34 2.171840 AGCGGAGTGACATCTAGTTGT 58.828 47.619 6.14 6.14 0.00 3.32
34 35 3.353557 AGCGGAGTGACATCTAGTTGTA 58.646 45.455 6.43 0.00 0.00 2.41
35 36 3.762288 AGCGGAGTGACATCTAGTTGTAA 59.238 43.478 6.43 0.00 0.00 2.41
36 37 4.402793 AGCGGAGTGACATCTAGTTGTAAT 59.597 41.667 6.43 0.00 0.00 1.89
37 38 5.105310 AGCGGAGTGACATCTAGTTGTAATT 60.105 40.000 6.43 0.00 0.00 1.40
38 39 5.581085 GCGGAGTGACATCTAGTTGTAATTT 59.419 40.000 6.43 0.00 0.00 1.82
39 40 6.755141 GCGGAGTGACATCTAGTTGTAATTTA 59.245 38.462 6.43 0.00 0.00 1.40
40 41 7.438459 GCGGAGTGACATCTAGTTGTAATTTAT 59.562 37.037 6.43 0.00 0.00 1.40
41 42 8.755941 CGGAGTGACATCTAGTTGTAATTTATG 58.244 37.037 6.43 0.00 0.00 1.90
42 43 9.046296 GGAGTGACATCTAGTTGTAATTTATGG 57.954 37.037 6.43 0.00 0.00 2.74
43 44 9.817809 GAGTGACATCTAGTTGTAATTTATGGA 57.182 33.333 6.43 0.00 0.00 3.41
44 45 9.823647 AGTGACATCTAGTTGTAATTTATGGAG 57.176 33.333 6.43 0.00 0.00 3.86
45 46 8.552034 GTGACATCTAGTTGTAATTTATGGAGC 58.448 37.037 6.43 0.00 0.00 4.70
46 47 7.438160 TGACATCTAGTTGTAATTTATGGAGCG 59.562 37.037 6.43 0.00 0.00 5.03
47 48 6.706270 ACATCTAGTTGTAATTTATGGAGCGG 59.294 38.462 4.59 0.00 0.00 5.52
48 49 5.054477 TCTAGTTGTAATTTATGGAGCGGC 58.946 41.667 0.00 0.00 0.00 6.53
49 50 3.886123 AGTTGTAATTTATGGAGCGGCT 58.114 40.909 0.00 0.00 0.00 5.52
50 51 5.031066 AGTTGTAATTTATGGAGCGGCTA 57.969 39.130 0.60 0.00 0.00 3.93
51 52 5.433526 AGTTGTAATTTATGGAGCGGCTAA 58.566 37.500 0.60 0.00 0.00 3.09
52 53 5.883673 AGTTGTAATTTATGGAGCGGCTAAA 59.116 36.000 0.60 0.00 0.00 1.85
53 54 6.376018 AGTTGTAATTTATGGAGCGGCTAAAA 59.624 34.615 0.60 2.16 0.00 1.52
54 55 6.126568 TGTAATTTATGGAGCGGCTAAAAC 57.873 37.500 0.60 0.00 0.00 2.43
55 56 3.963383 ATTTATGGAGCGGCTAAAACG 57.037 42.857 0.60 0.00 0.00 3.60
56 57 2.676632 TTATGGAGCGGCTAAAACGA 57.323 45.000 0.60 0.00 0.00 3.85
57 58 2.902705 TATGGAGCGGCTAAAACGAT 57.097 45.000 0.60 0.00 0.00 3.73
58 59 1.299541 ATGGAGCGGCTAAAACGATG 58.700 50.000 0.60 0.00 0.00 3.84
59 60 1.352056 GGAGCGGCTAAAACGATGC 59.648 57.895 0.60 0.00 0.00 3.91
60 61 1.090052 GGAGCGGCTAAAACGATGCT 61.090 55.000 0.60 0.00 35.23 3.79
61 62 0.301987 GAGCGGCTAAAACGATGCTC 59.698 55.000 0.60 0.00 41.57 4.26
62 63 1.090052 AGCGGCTAAAACGATGCTCC 61.090 55.000 0.00 0.00 0.00 4.70
63 64 1.636340 CGGCTAAAACGATGCTCCG 59.364 57.895 0.00 0.00 0.00 4.63
64 65 1.352056 GGCTAAAACGATGCTCCGC 59.648 57.895 0.00 0.00 0.00 5.54
65 66 1.012234 GCTAAAACGATGCTCCGCG 60.012 57.895 0.00 0.00 0.00 6.46
66 67 1.012234 CTAAAACGATGCTCCGCGC 60.012 57.895 0.00 0.00 39.77 6.86
67 68 2.665326 CTAAAACGATGCTCCGCGCG 62.665 60.000 25.67 25.67 43.27 6.86
83 84 4.554363 CGCTCCGCTCCGTGGTAG 62.554 72.222 0.00 0.00 34.40 3.18
84 85 3.138798 GCTCCGCTCCGTGGTAGA 61.139 66.667 0.00 0.00 34.40 2.59
85 86 3.111939 CTCCGCTCCGTGGTAGAG 58.888 66.667 0.00 0.00 34.40 2.43
86 87 2.439701 TCCGCTCCGTGGTAGAGG 60.440 66.667 0.00 0.00 35.44 3.69
87 88 2.439701 CCGCTCCGTGGTAGAGGA 60.440 66.667 3.28 0.00 36.11 3.71
91 92 2.494677 CTCCGTGGTAGAGGAGTGG 58.505 63.158 3.49 0.00 46.68 4.00
92 93 0.034380 CTCCGTGGTAGAGGAGTGGA 60.034 60.000 3.49 0.00 46.68 4.02
93 94 0.034380 TCCGTGGTAGAGGAGTGGAG 60.034 60.000 0.00 0.00 31.95 3.86
94 95 1.038130 CCGTGGTAGAGGAGTGGAGG 61.038 65.000 0.00 0.00 0.00 4.30
95 96 1.038130 CGTGGTAGAGGAGTGGAGGG 61.038 65.000 0.00 0.00 0.00 4.30
96 97 0.041386 GTGGTAGAGGAGTGGAGGGT 59.959 60.000 0.00 0.00 0.00 4.34
97 98 0.790993 TGGTAGAGGAGTGGAGGGTT 59.209 55.000 0.00 0.00 0.00 4.11
98 99 2.005350 TGGTAGAGGAGTGGAGGGTTA 58.995 52.381 0.00 0.00 0.00 2.85
99 100 2.292061 TGGTAGAGGAGTGGAGGGTTAC 60.292 54.545 0.00 0.00 0.00 2.50
100 101 2.386779 GTAGAGGAGTGGAGGGTTACC 58.613 57.143 0.00 0.00 0.00 2.85
101 102 0.790993 AGAGGAGTGGAGGGTTACCA 59.209 55.000 2.98 0.00 40.13 3.25
102 103 1.151413 AGAGGAGTGGAGGGTTACCAA 59.849 52.381 2.98 0.00 39.22 3.67
103 104 1.982958 GAGGAGTGGAGGGTTACCAAA 59.017 52.381 2.98 0.00 39.22 3.28
104 105 1.703513 AGGAGTGGAGGGTTACCAAAC 59.296 52.381 2.98 0.00 39.22 2.93
105 106 1.422402 GGAGTGGAGGGTTACCAAACA 59.578 52.381 2.98 0.00 39.22 2.83
106 107 2.041216 GGAGTGGAGGGTTACCAAACAT 59.959 50.000 2.98 0.00 39.22 2.71
107 108 3.264964 GGAGTGGAGGGTTACCAAACATA 59.735 47.826 2.98 0.00 39.22 2.29
108 109 4.514401 GAGTGGAGGGTTACCAAACATAG 58.486 47.826 2.98 0.00 39.22 2.23
109 110 3.014623 GTGGAGGGTTACCAAACATAGC 58.985 50.000 2.98 0.00 39.22 2.97
110 111 2.025699 TGGAGGGTTACCAAACATAGCC 60.026 50.000 2.98 0.00 40.13 3.93
111 112 2.241430 GGAGGGTTACCAAACATAGCCT 59.759 50.000 2.98 0.00 40.13 4.58
112 113 3.457012 GGAGGGTTACCAAACATAGCCTA 59.543 47.826 2.98 0.00 40.13 3.93
113 114 4.444449 GGAGGGTTACCAAACATAGCCTAG 60.444 50.000 2.98 0.00 40.13 3.02
114 115 3.458487 AGGGTTACCAAACATAGCCTAGG 59.542 47.826 3.67 3.67 40.13 3.02
115 116 3.201487 GGGTTACCAAACATAGCCTAGGT 59.799 47.826 11.31 0.00 37.34 3.08
116 117 4.409901 GGGTTACCAAACATAGCCTAGGTA 59.590 45.833 11.31 2.05 37.34 3.08
117 118 5.072736 GGGTTACCAAACATAGCCTAGGTAT 59.927 44.000 11.31 4.45 37.34 2.73
118 119 6.410041 GGGTTACCAAACATAGCCTAGGTATT 60.410 42.308 11.31 0.00 37.34 1.89
119 120 7.058525 GGTTACCAAACATAGCCTAGGTATTT 58.941 38.462 11.31 1.68 37.34 1.40
120 121 8.212995 GGTTACCAAACATAGCCTAGGTATTTA 58.787 37.037 11.31 0.00 37.34 1.40
121 122 9.049523 GTTACCAAACATAGCCTAGGTATTTAC 57.950 37.037 11.31 0.00 35.56 2.01
122 123 6.598503 ACCAAACATAGCCTAGGTATTTACC 58.401 40.000 11.31 0.00 46.82 2.85
137 138 7.191593 GGTATTTACCATATAATCCCTCCGT 57.808 40.000 1.79 0.00 45.73 4.69
138 139 7.627311 GGTATTTACCATATAATCCCTCCGTT 58.373 38.462 1.79 0.00 45.73 4.44
139 140 7.767659 GGTATTTACCATATAATCCCTCCGTTC 59.232 40.741 1.79 0.00 45.73 3.95
140 141 5.750352 TTACCATATAATCCCTCCGTTCC 57.250 43.478 0.00 0.00 0.00 3.62
141 142 3.593942 ACCATATAATCCCTCCGTTCCA 58.406 45.455 0.00 0.00 0.00 3.53
142 143 3.977999 ACCATATAATCCCTCCGTTCCAA 59.022 43.478 0.00 0.00 0.00 3.53
143 144 4.414182 ACCATATAATCCCTCCGTTCCAAA 59.586 41.667 0.00 0.00 0.00 3.28
144 145 5.103855 ACCATATAATCCCTCCGTTCCAAAA 60.104 40.000 0.00 0.00 0.00 2.44
145 146 6.010219 CCATATAATCCCTCCGTTCCAAAAT 58.990 40.000 0.00 0.00 0.00 1.82
146 147 7.172342 CCATATAATCCCTCCGTTCCAAAATA 58.828 38.462 0.00 0.00 0.00 1.40
147 148 7.336931 CCATATAATCCCTCCGTTCCAAAATAG 59.663 40.741 0.00 0.00 0.00 1.73
148 149 4.855298 AATCCCTCCGTTCCAAAATAGA 57.145 40.909 0.00 0.00 0.00 1.98
149 150 5.388599 AATCCCTCCGTTCCAAAATAGAT 57.611 39.130 0.00 0.00 0.00 1.98
150 151 4.150897 TCCCTCCGTTCCAAAATAGATG 57.849 45.455 0.00 0.00 0.00 2.90
151 152 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
152 153 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
153 154 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
154 155 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
155 156 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
156 157 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
157 158 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
158 159 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
159 160 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
160 161 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
161 162 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
162 163 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
163 164 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
164 165 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
201 202 9.893305 AAAGTTGAGTCATCTATTTTAAAACGG 57.107 29.630 1.97 0.00 0.00 4.44
202 203 8.842358 AGTTGAGTCATCTATTTTAAAACGGA 57.158 30.769 1.97 5.09 0.00 4.69
203 204 8.936864 AGTTGAGTCATCTATTTTAAAACGGAG 58.063 33.333 1.97 1.74 0.00 4.63
204 205 7.843490 TGAGTCATCTATTTTAAAACGGAGG 57.157 36.000 1.97 6.55 0.00 4.30
205 206 6.821665 TGAGTCATCTATTTTAAAACGGAGGG 59.178 38.462 1.97 2.46 0.00 4.30
206 207 6.954232 AGTCATCTATTTTAAAACGGAGGGA 58.046 36.000 1.97 4.48 0.00 4.20
228 229 6.405176 GGGAATAGTTTGGAGAGCAAGATTTG 60.405 42.308 0.00 0.00 0.00 2.32
259 260 5.006746 CGGGAGAGCACACAAATAAATAGAC 59.993 44.000 0.00 0.00 0.00 2.59
260 261 5.297029 GGGAGAGCACACAAATAAATAGACC 59.703 44.000 0.00 0.00 0.00 3.85
262 263 5.815581 AGAGCACACAAATAAATAGACCCA 58.184 37.500 0.00 0.00 0.00 4.51
263 264 5.882557 AGAGCACACAAATAAATAGACCCAG 59.117 40.000 0.00 0.00 0.00 4.45
264 265 5.570320 AGCACACAAATAAATAGACCCAGT 58.430 37.500 0.00 0.00 0.00 4.00
265 266 6.717289 AGCACACAAATAAATAGACCCAGTA 58.283 36.000 0.00 0.00 0.00 2.74
271 296 9.342308 CACAAATAAATAGACCCAGTATGACAT 57.658 33.333 0.00 0.00 39.69 3.06
291 316 6.881065 TGACATGGAGAGTTTGATTTTAGGAG 59.119 38.462 0.00 0.00 0.00 3.69
293 318 7.234355 ACATGGAGAGTTTGATTTTAGGAGTT 58.766 34.615 0.00 0.00 0.00 3.01
295 320 5.932303 TGGAGAGTTTGATTTTAGGAGTTCG 59.068 40.000 0.00 0.00 0.00 3.95
296 321 5.932883 GGAGAGTTTGATTTTAGGAGTTCGT 59.067 40.000 0.00 0.00 0.00 3.85
298 323 7.041303 GGAGAGTTTGATTTTAGGAGTTCGTTT 60.041 37.037 0.00 0.00 0.00 3.60
299 324 7.639945 AGAGTTTGATTTTAGGAGTTCGTTTG 58.360 34.615 0.00 0.00 0.00 2.93
300 325 7.282450 AGAGTTTGATTTTAGGAGTTCGTTTGT 59.718 33.333 0.00 0.00 0.00 2.83
301 326 8.441312 AGTTTGATTTTAGGAGTTCGTTTGTA 57.559 30.769 0.00 0.00 0.00 2.41
302 327 8.557029 AGTTTGATTTTAGGAGTTCGTTTGTAG 58.443 33.333 0.00 0.00 0.00 2.74
304 329 7.647907 TGATTTTAGGAGTTCGTTTGTAGTC 57.352 36.000 0.00 0.00 0.00 2.59
305 330 7.439381 TGATTTTAGGAGTTCGTTTGTAGTCT 58.561 34.615 0.00 0.00 0.00 3.24
306 331 7.384115 TGATTTTAGGAGTTCGTTTGTAGTCTG 59.616 37.037 0.00 0.00 0.00 3.51
307 332 5.779529 TTAGGAGTTCGTTTGTAGTCTGT 57.220 39.130 0.00 0.00 0.00 3.41
308 333 6.882610 TTAGGAGTTCGTTTGTAGTCTGTA 57.117 37.500 0.00 0.00 0.00 2.74
309 334 5.979288 AGGAGTTCGTTTGTAGTCTGTAT 57.021 39.130 0.00 0.00 0.00 2.29
310 335 6.342338 AGGAGTTCGTTTGTAGTCTGTATT 57.658 37.500 0.00 0.00 0.00 1.89
315 351 9.403110 GAGTTCGTTTGTAGTCTGTATTTTCTA 57.597 33.333 0.00 0.00 0.00 2.10
344 380 5.878116 TGCACTAGTTGTTTGTTTGTAGTCT 59.122 36.000 0.00 0.00 0.00 3.24
376 412 8.491045 TCAAATTCAAAACTAGGGAGGATTTT 57.509 30.769 0.00 0.00 0.00 1.82
383 419 8.638873 TCAAAACTAGGGAGGATTTTCTTTTTC 58.361 33.333 0.00 0.00 0.00 2.29
431 469 1.094650 TGAGCAGTTGAGCACGCAAA 61.095 50.000 0.00 0.00 36.85 3.68
485 523 3.056458 CCGTCCACAGTAGCCACA 58.944 61.111 0.00 0.00 0.00 4.17
487 525 0.821517 CCGTCCACAGTAGCCACATA 59.178 55.000 0.00 0.00 0.00 2.29
498 536 0.398696 AGCCACATACCAACCGTCAA 59.601 50.000 0.00 0.00 0.00 3.18
500 538 1.199097 GCCACATACCAACCGTCAAAG 59.801 52.381 0.00 0.00 0.00 2.77
504 542 2.290071 ACATACCAACCGTCAAAGGAGG 60.290 50.000 0.00 0.00 36.54 4.30
642 712 3.522731 CAGTCCGCTCCCTCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
643 713 4.824515 AGTCCGCTCCCTCTCCGG 62.825 72.222 0.00 0.00 43.21 5.14
1074 1158 4.803426 GGTCTCCTCACGCAGGCG 62.803 72.222 12.71 12.71 43.08 5.52
1310 1407 2.735857 GTCCGTTGACCCGTTCGG 60.736 66.667 4.08 4.08 43.65 4.30
1617 1740 0.842030 ACCCATGGCAGGAGAACTCA 60.842 55.000 6.09 0.00 0.00 3.41
1892 2053 7.253750 GCTTGAGTTGTTTTGTGTTTAGACATG 60.254 37.037 0.00 0.00 38.23 3.21
1939 2100 8.991243 AATGTGAAAACATACAAATGGATGAG 57.009 30.769 12.50 0.00 37.43 2.90
2002 2164 4.268644 CGTGTTGATGAATAGATCGTTGCT 59.731 41.667 0.00 0.00 0.00 3.91
2023 2185 9.612620 GTTGCTGCTAATATTCCAAACATATAC 57.387 33.333 0.00 0.00 0.00 1.47
2024 2186 9.573166 TTGCTGCTAATATTCCAAACATATACT 57.427 29.630 0.00 0.00 0.00 2.12
2035 2197 6.684686 TCCAAACATATACTACGTATGAGGC 58.315 40.000 0.00 0.00 34.44 4.70
2036 2198 6.492429 TCCAAACATATACTACGTATGAGGCT 59.508 38.462 0.00 0.00 34.44 4.58
2037 2199 6.586463 CCAAACATATACTACGTATGAGGCTG 59.414 42.308 0.00 0.00 34.44 4.85
2038 2200 7.368059 CAAACATATACTACGTATGAGGCTGA 58.632 38.462 0.00 0.00 34.44 4.26
2039 2201 7.520451 AACATATACTACGTATGAGGCTGAA 57.480 36.000 0.00 0.00 34.44 3.02
2040 2202 7.520451 ACATATACTACGTATGAGGCTGAAA 57.480 36.000 0.00 0.00 34.44 2.69
2041 2203 7.594714 ACATATACTACGTATGAGGCTGAAAG 58.405 38.462 0.00 0.00 34.44 2.62
2042 2204 7.447545 ACATATACTACGTATGAGGCTGAAAGA 59.552 37.037 0.00 0.00 32.93 2.52
2043 2205 6.710597 ATACTACGTATGAGGCTGAAAGAA 57.289 37.500 0.00 0.00 34.07 2.52
2044 2206 5.401531 ACTACGTATGAGGCTGAAAGAAA 57.598 39.130 0.00 0.00 34.07 2.52
2045 2207 5.411781 ACTACGTATGAGGCTGAAAGAAAG 58.588 41.667 0.00 0.00 34.07 2.62
2046 2208 4.537135 ACGTATGAGGCTGAAAGAAAGA 57.463 40.909 0.00 0.00 34.07 2.52
2047 2209 5.091261 ACGTATGAGGCTGAAAGAAAGAT 57.909 39.130 0.00 0.00 34.07 2.40
2048 2210 4.872691 ACGTATGAGGCTGAAAGAAAGATG 59.127 41.667 0.00 0.00 34.07 2.90
2049 2211 5.111989 CGTATGAGGCTGAAAGAAAGATGA 58.888 41.667 0.00 0.00 34.07 2.92
2050 2212 5.006165 CGTATGAGGCTGAAAGAAAGATGAC 59.994 44.000 0.00 0.00 34.07 3.06
2051 2213 4.630644 TGAGGCTGAAAGAAAGATGACT 57.369 40.909 0.00 0.00 34.07 3.41
2052 2214 5.745312 TGAGGCTGAAAGAAAGATGACTA 57.255 39.130 0.00 0.00 34.07 2.59
2053 2215 6.305272 TGAGGCTGAAAGAAAGATGACTAT 57.695 37.500 0.00 0.00 34.07 2.12
2054 2216 6.344500 TGAGGCTGAAAGAAAGATGACTATC 58.656 40.000 0.00 0.00 34.07 2.08
2055 2217 6.155910 TGAGGCTGAAAGAAAGATGACTATCT 59.844 38.462 0.00 0.00 40.38 1.98
2056 2218 7.343057 TGAGGCTGAAAGAAAGATGACTATCTA 59.657 37.037 0.00 0.00 38.46 1.98
2057 2219 8.261349 AGGCTGAAAGAAAGATGACTATCTAT 57.739 34.615 0.00 0.00 38.46 1.98
2058 2220 8.713036 AGGCTGAAAGAAAGATGACTATCTATT 58.287 33.333 0.00 0.00 38.46 1.73
2059 2221 9.336171 GGCTGAAAGAAAGATGACTATCTATTT 57.664 33.333 0.00 0.00 38.46 1.40
2086 2248 8.753497 ATAATAAAAGGAGATGAACTTCCCAC 57.247 34.615 0.00 0.00 0.00 4.61
2087 2249 3.441500 AAAGGAGATGAACTTCCCACC 57.558 47.619 0.00 0.00 0.00 4.61
2088 2250 2.044793 AGGAGATGAACTTCCCACCA 57.955 50.000 0.00 0.00 0.00 4.17
2089 2251 2.348472 AGGAGATGAACTTCCCACCAA 58.652 47.619 0.00 0.00 0.00 3.67
2090 2252 2.307098 AGGAGATGAACTTCCCACCAAG 59.693 50.000 0.00 0.00 0.00 3.61
2091 2253 2.619074 GGAGATGAACTTCCCACCAAGG 60.619 54.545 0.00 0.00 37.03 3.61
2158 2320 8.911247 AAAAGCAAAATATCTGGACGTTAATC 57.089 30.769 0.00 0.00 0.00 1.75
2159 2321 7.865706 AAGCAAAATATCTGGACGTTAATCT 57.134 32.000 0.00 0.00 0.00 2.40
2160 2322 7.484035 AGCAAAATATCTGGACGTTAATCTC 57.516 36.000 0.00 0.00 0.00 2.75
2161 2323 6.483640 AGCAAAATATCTGGACGTTAATCTCC 59.516 38.462 0.00 0.00 0.00 3.71
2162 2324 6.483640 GCAAAATATCTGGACGTTAATCTCCT 59.516 38.462 0.00 0.00 0.00 3.69
2163 2325 7.307455 GCAAAATATCTGGACGTTAATCTCCTC 60.307 40.741 0.00 0.00 0.00 3.71
2164 2326 7.604657 AAATATCTGGACGTTAATCTCCTCT 57.395 36.000 0.00 0.00 0.00 3.69
2165 2327 7.604657 AATATCTGGACGTTAATCTCCTCTT 57.395 36.000 0.00 0.00 0.00 2.85
2166 2328 4.985538 TCTGGACGTTAATCTCCTCTTC 57.014 45.455 0.00 0.00 0.00 2.87
2167 2329 4.601084 TCTGGACGTTAATCTCCTCTTCT 58.399 43.478 0.00 0.00 0.00 2.85
2168 2330 5.017490 TCTGGACGTTAATCTCCTCTTCTT 58.983 41.667 0.00 0.00 0.00 2.52
2169 2331 6.185511 TCTGGACGTTAATCTCCTCTTCTTA 58.814 40.000 0.00 0.00 0.00 2.10
2170 2332 6.834451 TCTGGACGTTAATCTCCTCTTCTTAT 59.166 38.462 0.00 0.00 0.00 1.73
2171 2333 7.342284 TCTGGACGTTAATCTCCTCTTCTTATT 59.658 37.037 0.00 0.00 0.00 1.40
2172 2334 8.529424 TGGACGTTAATCTCCTCTTCTTATTA 57.471 34.615 0.00 0.00 0.00 0.98
2173 2335 9.144298 TGGACGTTAATCTCCTCTTCTTATTAT 57.856 33.333 0.00 0.00 0.00 1.28
2174 2336 9.984190 GGACGTTAATCTCCTCTTCTTATTATT 57.016 33.333 0.00 0.00 0.00 1.40
2196 2358 9.904198 TTATTTCATAATGACATCTGACCTTGA 57.096 29.630 0.00 0.00 0.00 3.02
2197 2359 8.991783 ATTTCATAATGACATCTGACCTTGAT 57.008 30.769 0.00 0.00 0.00 2.57
2198 2360 7.797038 TTCATAATGACATCTGACCTTGATG 57.203 36.000 0.00 0.00 44.79 3.07
2206 2368 4.892433 CATCTGACCTTGATGTATCTCCC 58.108 47.826 0.00 0.00 37.22 4.30
2207 2369 2.959030 TCTGACCTTGATGTATCTCCCG 59.041 50.000 0.00 0.00 0.00 5.14
2208 2370 2.695666 CTGACCTTGATGTATCTCCCGT 59.304 50.000 0.00 0.00 0.00 5.28
2209 2371 2.430694 TGACCTTGATGTATCTCCCGTG 59.569 50.000 0.00 0.00 0.00 4.94
2210 2372 1.139058 ACCTTGATGTATCTCCCGTGC 59.861 52.381 0.00 0.00 0.00 5.34
2211 2373 1.541233 CCTTGATGTATCTCCCGTGCC 60.541 57.143 0.00 0.00 0.00 5.01
2212 2374 1.414181 CTTGATGTATCTCCCGTGCCT 59.586 52.381 0.00 0.00 0.00 4.75
2213 2375 2.375014 TGATGTATCTCCCGTGCCTA 57.625 50.000 0.00 0.00 0.00 3.93
2214 2376 2.673258 TGATGTATCTCCCGTGCCTAA 58.327 47.619 0.00 0.00 0.00 2.69
2215 2377 2.364324 TGATGTATCTCCCGTGCCTAAC 59.636 50.000 0.00 0.00 0.00 2.34
2216 2378 1.117150 TGTATCTCCCGTGCCTAACC 58.883 55.000 0.00 0.00 0.00 2.85
2217 2379 1.342674 TGTATCTCCCGTGCCTAACCT 60.343 52.381 0.00 0.00 0.00 3.50
2218 2380 1.340568 GTATCTCCCGTGCCTAACCTC 59.659 57.143 0.00 0.00 0.00 3.85
2219 2381 0.032017 ATCTCCCGTGCCTAACCTCT 60.032 55.000 0.00 0.00 0.00 3.69
2220 2382 0.683504 TCTCCCGTGCCTAACCTCTC 60.684 60.000 0.00 0.00 0.00 3.20
2221 2383 0.970937 CTCCCGTGCCTAACCTCTCA 60.971 60.000 0.00 0.00 0.00 3.27
2222 2384 1.218316 CCCGTGCCTAACCTCTCAC 59.782 63.158 0.00 0.00 0.00 3.51
2223 2385 4.478195 CGTGCCTAACCTCTCACG 57.522 61.111 0.00 0.00 44.62 4.35
2224 2386 1.585006 CGTGCCTAACCTCTCACGT 59.415 57.895 5.58 0.00 44.84 4.49
2225 2387 0.038526 CGTGCCTAACCTCTCACGTT 60.039 55.000 5.58 0.00 44.84 3.99
2226 2388 1.711206 GTGCCTAACCTCTCACGTTC 58.289 55.000 0.00 0.00 0.00 3.95
2227 2389 1.000506 GTGCCTAACCTCTCACGTTCA 59.999 52.381 0.00 0.00 0.00 3.18
2228 2390 1.899814 TGCCTAACCTCTCACGTTCAT 59.100 47.619 0.00 0.00 0.00 2.57
2229 2391 2.094182 TGCCTAACCTCTCACGTTCATC 60.094 50.000 0.00 0.00 0.00 2.92
2230 2392 2.166664 GCCTAACCTCTCACGTTCATCT 59.833 50.000 0.00 0.00 0.00 2.90
2231 2393 3.735514 GCCTAACCTCTCACGTTCATCTC 60.736 52.174 0.00 0.00 0.00 2.75
2232 2394 3.181485 CCTAACCTCTCACGTTCATCTCC 60.181 52.174 0.00 0.00 0.00 3.71
2233 2395 1.924731 ACCTCTCACGTTCATCTCCA 58.075 50.000 0.00 0.00 0.00 3.86
2234 2396 2.248248 ACCTCTCACGTTCATCTCCAA 58.752 47.619 0.00 0.00 0.00 3.53
2235 2397 2.834549 ACCTCTCACGTTCATCTCCAAT 59.165 45.455 0.00 0.00 0.00 3.16
2236 2398 3.193263 CCTCTCACGTTCATCTCCAATG 58.807 50.000 0.00 0.00 0.00 2.82
2237 2399 3.368843 CCTCTCACGTTCATCTCCAATGT 60.369 47.826 0.00 0.00 0.00 2.71
2238 2400 3.588955 TCTCACGTTCATCTCCAATGTG 58.411 45.455 0.00 0.00 40.66 3.21
2239 2401 3.258123 TCTCACGTTCATCTCCAATGTGA 59.742 43.478 7.15 7.15 44.08 3.58
2240 2402 3.996363 CTCACGTTCATCTCCAATGTGAA 59.004 43.478 8.42 0.00 45.04 3.18
2241 2403 3.996363 TCACGTTCATCTCCAATGTGAAG 59.004 43.478 5.24 0.00 43.59 3.02
2242 2404 3.996363 CACGTTCATCTCCAATGTGAAGA 59.004 43.478 0.00 0.00 41.47 2.87
2243 2405 4.452114 CACGTTCATCTCCAATGTGAAGAA 59.548 41.667 0.00 0.00 41.47 2.52
2244 2406 4.692625 ACGTTCATCTCCAATGTGAAGAAG 59.307 41.667 0.00 0.00 32.98 2.85
2245 2407 4.692625 CGTTCATCTCCAATGTGAAGAAGT 59.307 41.667 0.00 0.00 32.98 3.01
2246 2408 5.180117 CGTTCATCTCCAATGTGAAGAAGTT 59.820 40.000 0.00 0.00 32.98 2.66
2247 2409 6.293626 CGTTCATCTCCAATGTGAAGAAGTTT 60.294 38.462 0.00 0.00 32.98 2.66
2248 2410 7.095229 CGTTCATCTCCAATGTGAAGAAGTTTA 60.095 37.037 0.00 0.00 32.98 2.01
2249 2411 7.912056 TCATCTCCAATGTGAAGAAGTTTAG 57.088 36.000 0.00 0.00 0.00 1.85
2250 2412 7.453393 TCATCTCCAATGTGAAGAAGTTTAGT 58.547 34.615 0.00 0.00 0.00 2.24
2251 2413 8.593679 TCATCTCCAATGTGAAGAAGTTTAGTA 58.406 33.333 0.00 0.00 0.00 1.82
2252 2414 8.877779 CATCTCCAATGTGAAGAAGTTTAGTAG 58.122 37.037 0.00 0.00 0.00 2.57
2253 2415 6.874134 TCTCCAATGTGAAGAAGTTTAGTAGC 59.126 38.462 0.00 0.00 0.00 3.58
2254 2416 5.938125 TCCAATGTGAAGAAGTTTAGTAGCC 59.062 40.000 0.00 0.00 0.00 3.93
2255 2417 5.705441 CCAATGTGAAGAAGTTTAGTAGCCA 59.295 40.000 0.00 0.00 0.00 4.75
2256 2418 6.128172 CCAATGTGAAGAAGTTTAGTAGCCAG 60.128 42.308 0.00 0.00 0.00 4.85
2257 2419 5.801531 TGTGAAGAAGTTTAGTAGCCAGA 57.198 39.130 0.00 0.00 0.00 3.86
2258 2420 5.784177 TGTGAAGAAGTTTAGTAGCCAGAG 58.216 41.667 0.00 0.00 0.00 3.35
2259 2421 5.172205 GTGAAGAAGTTTAGTAGCCAGAGG 58.828 45.833 0.00 0.00 0.00 3.69
2260 2422 4.838986 TGAAGAAGTTTAGTAGCCAGAGGT 59.161 41.667 0.00 0.00 0.00 3.85
2261 2423 5.047235 TGAAGAAGTTTAGTAGCCAGAGGTC 60.047 44.000 0.00 0.00 0.00 3.85
2262 2424 3.444388 AGAAGTTTAGTAGCCAGAGGTCG 59.556 47.826 0.00 0.00 0.00 4.79
2263 2425 3.083122 AGTTTAGTAGCCAGAGGTCGA 57.917 47.619 0.00 0.00 0.00 4.20
2264 2426 2.754002 AGTTTAGTAGCCAGAGGTCGAC 59.246 50.000 7.13 7.13 0.00 4.20
2265 2427 2.754002 GTTTAGTAGCCAGAGGTCGACT 59.246 50.000 16.46 0.90 0.00 4.18
2266 2428 2.328819 TAGTAGCCAGAGGTCGACTC 57.671 55.000 16.46 10.87 46.98 3.36
2274 2436 1.439644 GAGGTCGACTCCCATCAGC 59.560 63.158 16.46 0.00 40.49 4.26
2275 2437 1.000993 AGGTCGACTCCCATCAGCT 59.999 57.895 16.46 0.00 0.00 4.24
2276 2438 0.259065 AGGTCGACTCCCATCAGCTA 59.741 55.000 16.46 0.00 0.00 3.32
2277 2439 0.386113 GGTCGACTCCCATCAGCTAC 59.614 60.000 16.46 0.00 0.00 3.58
2278 2440 1.103803 GTCGACTCCCATCAGCTACA 58.896 55.000 8.70 0.00 0.00 2.74
2279 2441 1.476891 GTCGACTCCCATCAGCTACAA 59.523 52.381 8.70 0.00 0.00 2.41
2280 2442 2.101582 GTCGACTCCCATCAGCTACAAT 59.898 50.000 8.70 0.00 0.00 2.71
2281 2443 2.362397 TCGACTCCCATCAGCTACAATC 59.638 50.000 0.00 0.00 0.00 2.67
2282 2444 2.363680 CGACTCCCATCAGCTACAATCT 59.636 50.000 0.00 0.00 0.00 2.40
2283 2445 3.181471 CGACTCCCATCAGCTACAATCTT 60.181 47.826 0.00 0.00 0.00 2.40
2284 2446 4.376146 GACTCCCATCAGCTACAATCTTC 58.624 47.826 0.00 0.00 0.00 2.87
2285 2447 3.776969 ACTCCCATCAGCTACAATCTTCA 59.223 43.478 0.00 0.00 0.00 3.02
2286 2448 4.225942 ACTCCCATCAGCTACAATCTTCAA 59.774 41.667 0.00 0.00 0.00 2.69
2287 2449 5.104193 ACTCCCATCAGCTACAATCTTCAAT 60.104 40.000 0.00 0.00 0.00 2.57
2288 2450 6.100279 ACTCCCATCAGCTACAATCTTCAATA 59.900 38.462 0.00 0.00 0.00 1.90
2289 2451 6.528321 TCCCATCAGCTACAATCTTCAATAG 58.472 40.000 0.00 0.00 0.00 1.73
2290 2452 6.100279 TCCCATCAGCTACAATCTTCAATAGT 59.900 38.462 0.00 0.00 0.00 2.12
2291 2453 6.769822 CCCATCAGCTACAATCTTCAATAGTT 59.230 38.462 0.00 0.00 0.00 2.24
2292 2454 7.933577 CCCATCAGCTACAATCTTCAATAGTTA 59.066 37.037 0.00 0.00 0.00 2.24
2293 2455 9.499479 CCATCAGCTACAATCTTCAATAGTTAT 57.501 33.333 0.00 0.00 0.00 1.89
2311 2473 5.077564 AGTTATTTTTCAGGAACCAGGACC 58.922 41.667 0.00 0.00 0.00 4.46
2370 2540 7.578169 AGCAAAACTTGTACTAATAGTCGAC 57.422 36.000 7.70 7.70 0.00 4.20
2404 2574 9.768662 AGTTGCACAAGAAATGAAAATCTATTT 57.231 25.926 0.00 0.00 0.00 1.40
2442 2612 6.069615 AGGCAATTAGGGAGCTAAGTAAAGAA 60.070 38.462 0.00 0.00 0.00 2.52
2445 2615 7.041030 GCAATTAGGGAGCTAAGTAAAGAATCC 60.041 40.741 0.00 0.00 0.00 3.01
2458 2628 0.693049 AGAATCCGAGCCACCAAACT 59.307 50.000 0.00 0.00 0.00 2.66
2463 2633 0.320374 CCGAGCCACCAAACTAGACA 59.680 55.000 0.00 0.00 0.00 3.41
2481 2654 0.242825 CATGAGGTTTGCAGTGCCTG 59.757 55.000 13.72 0.00 31.89 4.85
2483 2656 0.395586 TGAGGTTTGCAGTGCCTGTT 60.396 50.000 13.72 0.00 33.43 3.16
2544 2725 5.363868 AGATGATTGAGTTCATTACCTCCGA 59.636 40.000 0.00 0.00 36.48 4.55
2550 2731 4.339530 TGAGTTCATTACCTCCGAGATCAG 59.660 45.833 0.00 0.00 0.00 2.90
2555 2736 4.099573 TCATTACCTCCGAGATCAGTTTCC 59.900 45.833 0.00 0.00 0.00 3.13
2556 2737 2.239681 ACCTCCGAGATCAGTTTCCT 57.760 50.000 0.00 0.00 0.00 3.36
2557 2738 2.104170 ACCTCCGAGATCAGTTTCCTC 58.896 52.381 0.00 0.00 0.00 3.71
2558 2739 1.410882 CCTCCGAGATCAGTTTCCTCC 59.589 57.143 0.00 0.00 0.00 4.30
2559 2740 2.103373 CTCCGAGATCAGTTTCCTCCA 58.897 52.381 0.00 0.00 0.00 3.86
2560 2741 2.497675 CTCCGAGATCAGTTTCCTCCAA 59.502 50.000 0.00 0.00 0.00 3.53
2563 2744 3.462021 CGAGATCAGTTTCCTCCAATCC 58.538 50.000 0.00 0.00 0.00 3.01
2564 2745 3.133721 CGAGATCAGTTTCCTCCAATCCT 59.866 47.826 0.00 0.00 0.00 3.24
2565 2746 4.702831 GAGATCAGTTTCCTCCAATCCTC 58.297 47.826 0.00 0.00 0.00 3.71
2566 2747 4.369872 AGATCAGTTTCCTCCAATCCTCT 58.630 43.478 0.00 0.00 0.00 3.69
2587 2768 2.358258 TGTTCCCCTCTCATTCCCTTT 58.642 47.619 0.00 0.00 0.00 3.11
2598 2779 2.308866 TCATTCCCTTTTGTCTCCCTCC 59.691 50.000 0.00 0.00 0.00 4.30
2607 2788 0.793617 TGTCTCCCTCCTCCCTTCTT 59.206 55.000 0.00 0.00 0.00 2.52
2630 2815 2.874701 GTCAGAGCAGAGCAAAGAACAA 59.125 45.455 0.00 0.00 0.00 2.83
2658 2843 7.771927 AAAAAGAGCCATGGATATATGAAGG 57.228 36.000 18.40 0.00 0.00 3.46
2676 2861 2.192443 CTACCGAGGAGCCGAGGA 59.808 66.667 9.66 0.00 0.00 3.71
2708 2893 8.865090 TCCAGATGGAAATAAGTTAAAAAGCAA 58.135 29.630 0.00 0.00 42.18 3.91
2709 2894 9.143631 CCAGATGGAAATAAGTTAAAAAGCAAG 57.856 33.333 0.00 0.00 37.39 4.01
2721 2906 9.569167 AAGTTAAAAAGCAAGTTCTAGACAAAC 57.431 29.630 0.00 0.00 0.00 2.93
2735 2920 7.397892 TCTAGACAAACATCTTAGACCAGAG 57.602 40.000 0.00 0.00 0.00 3.35
2804 2989 2.874701 GCTGAAAACACTGCAGAGAAGA 59.125 45.455 23.35 0.00 35.40 2.87
2818 3003 5.480422 TGCAGAGAAGACTATCTTGGTGTTA 59.520 40.000 0.00 0.00 36.73 2.41
2836 3021 6.886459 TGGTGTTAAGGGTGTAGTAGTAGTAG 59.114 42.308 0.00 0.00 0.00 2.57
2837 3022 6.887002 GGTGTTAAGGGTGTAGTAGTAGTAGT 59.113 42.308 0.00 0.00 0.00 2.73
2838 3023 8.047310 GGTGTTAAGGGTGTAGTAGTAGTAGTA 58.953 40.741 0.00 0.00 0.00 1.82
2839 3024 9.620259 GTGTTAAGGGTGTAGTAGTAGTAGTAT 57.380 37.037 0.00 0.00 0.00 2.12
2843 3028 8.805145 AAGGGTGTAGTAGTAGTAGTATAGGA 57.195 38.462 0.00 0.00 0.00 2.94
2844 3029 8.201242 AGGGTGTAGTAGTAGTAGTATAGGAC 57.799 42.308 0.00 0.00 0.00 3.85
2845 3030 8.016054 AGGGTGTAGTAGTAGTAGTATAGGACT 58.984 40.741 0.00 0.00 42.69 3.85
2846 3031 8.311109 GGGTGTAGTAGTAGTAGTATAGGACTC 58.689 44.444 0.00 0.00 39.81 3.36
2847 3032 9.088987 GGTGTAGTAGTAGTAGTATAGGACTCT 57.911 40.741 0.00 0.00 39.81 3.24
2867 3052 8.315482 GGACTCTAATTGTAGATTCCTTATCCC 58.685 40.741 11.10 0.00 45.98 3.85
2868 3053 8.798975 ACTCTAATTGTAGATTCCTTATCCCA 57.201 34.615 0.00 0.00 35.76 4.37
2869 3054 8.875168 ACTCTAATTGTAGATTCCTTATCCCAG 58.125 37.037 0.00 0.00 35.76 4.45
2870 3055 8.798975 TCTAATTGTAGATTCCTTATCCCAGT 57.201 34.615 0.00 0.00 33.45 4.00
2871 3056 8.871125 TCTAATTGTAGATTCCTTATCCCAGTC 58.129 37.037 0.00 0.00 33.45 3.51
2872 3057 7.698163 AATTGTAGATTCCTTATCCCAGTCT 57.302 36.000 0.00 0.00 33.45 3.24
2873 3058 8.798975 AATTGTAGATTCCTTATCCCAGTCTA 57.201 34.615 0.00 0.00 33.45 2.59
2874 3059 7.841282 TTGTAGATTCCTTATCCCAGTCTAG 57.159 40.000 0.00 0.00 33.45 2.43
2875 3060 6.923670 TGTAGATTCCTTATCCCAGTCTAGT 58.076 40.000 0.00 0.00 33.45 2.57
2876 3061 8.053776 TGTAGATTCCTTATCCCAGTCTAGTA 57.946 38.462 0.00 0.00 33.45 1.82
2877 3062 7.943447 TGTAGATTCCTTATCCCAGTCTAGTAC 59.057 40.741 0.00 0.00 33.45 2.73
2878 3063 7.169287 AGATTCCTTATCCCAGTCTAGTACT 57.831 40.000 0.00 0.00 34.43 2.73
2879 3064 8.290463 AGATTCCTTATCCCAGTCTAGTACTA 57.710 38.462 1.89 1.89 33.11 1.82
2880 3065 8.387813 AGATTCCTTATCCCAGTCTAGTACTAG 58.612 40.741 21.87 21.87 33.11 2.57
2881 3066 5.878627 TCCTTATCCCAGTCTAGTACTAGC 58.121 45.833 22.87 17.57 35.76 3.42
2882 3067 5.011586 CCTTATCCCAGTCTAGTACTAGCC 58.988 50.000 22.87 13.65 35.76 3.93
2883 3068 3.529216 ATCCCAGTCTAGTACTAGCCC 57.471 52.381 22.87 15.79 35.76 5.19
2884 3069 2.500590 TCCCAGTCTAGTACTAGCCCT 58.499 52.381 22.87 17.52 35.76 5.19
2885 3070 2.442502 TCCCAGTCTAGTACTAGCCCTC 59.557 54.545 22.87 13.33 35.76 4.30
2886 3071 2.175069 CCCAGTCTAGTACTAGCCCTCA 59.825 54.545 22.87 4.72 35.76 3.86
2887 3072 3.181427 CCCAGTCTAGTACTAGCCCTCAT 60.181 52.174 22.87 4.28 35.76 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.402259 ACTAGATGTCACTCCGCTTCG 59.598 52.381 0.00 0.00 0.00 3.79
11 12 3.182967 CAACTAGATGTCACTCCGCTTC 58.817 50.000 0.00 0.00 0.00 3.86
12 13 2.563179 ACAACTAGATGTCACTCCGCTT 59.437 45.455 0.00 0.00 0.00 4.68
13 14 2.171840 ACAACTAGATGTCACTCCGCT 58.828 47.619 0.00 0.00 0.00 5.52
14 15 2.656560 ACAACTAGATGTCACTCCGC 57.343 50.000 0.00 0.00 0.00 5.54
15 16 8.755941 CATAAATTACAACTAGATGTCACTCCG 58.244 37.037 9.15 0.00 34.75 4.63
16 17 9.046296 CCATAAATTACAACTAGATGTCACTCC 57.954 37.037 9.15 0.00 34.75 3.85
17 18 9.817809 TCCATAAATTACAACTAGATGTCACTC 57.182 33.333 9.15 0.00 34.75 3.51
18 19 9.823647 CTCCATAAATTACAACTAGATGTCACT 57.176 33.333 9.15 0.00 34.75 3.41
19 20 8.552034 GCTCCATAAATTACAACTAGATGTCAC 58.448 37.037 9.15 0.00 34.75 3.67
20 21 7.438160 CGCTCCATAAATTACAACTAGATGTCA 59.562 37.037 9.15 0.00 34.75 3.58
21 22 7.095607 CCGCTCCATAAATTACAACTAGATGTC 60.096 40.741 9.15 0.00 34.75 3.06
22 23 6.706270 CCGCTCCATAAATTACAACTAGATGT 59.294 38.462 10.74 10.74 37.32 3.06
23 24 6.347725 GCCGCTCCATAAATTACAACTAGATG 60.348 42.308 0.00 0.00 0.00 2.90
24 25 5.701290 GCCGCTCCATAAATTACAACTAGAT 59.299 40.000 0.00 0.00 0.00 1.98
25 26 5.054477 GCCGCTCCATAAATTACAACTAGA 58.946 41.667 0.00 0.00 0.00 2.43
26 27 5.057149 AGCCGCTCCATAAATTACAACTAG 58.943 41.667 0.00 0.00 0.00 2.57
27 28 5.031066 AGCCGCTCCATAAATTACAACTA 57.969 39.130 0.00 0.00 0.00 2.24
28 29 3.886123 AGCCGCTCCATAAATTACAACT 58.114 40.909 0.00 0.00 0.00 3.16
29 30 5.744666 TTAGCCGCTCCATAAATTACAAC 57.255 39.130 0.00 0.00 0.00 3.32
30 31 6.557110 GTTTTAGCCGCTCCATAAATTACAA 58.443 36.000 0.00 0.00 0.00 2.41
31 32 5.220700 CGTTTTAGCCGCTCCATAAATTACA 60.221 40.000 0.00 0.00 0.00 2.41
32 33 5.006941 TCGTTTTAGCCGCTCCATAAATTAC 59.993 40.000 0.00 0.00 0.00 1.89
33 34 5.117584 TCGTTTTAGCCGCTCCATAAATTA 58.882 37.500 0.00 0.00 0.00 1.40
34 35 3.942748 TCGTTTTAGCCGCTCCATAAATT 59.057 39.130 0.00 0.00 0.00 1.82
35 36 3.537580 TCGTTTTAGCCGCTCCATAAAT 58.462 40.909 0.00 0.00 0.00 1.40
36 37 2.975266 TCGTTTTAGCCGCTCCATAAA 58.025 42.857 0.00 0.00 0.00 1.40
37 38 2.676632 TCGTTTTAGCCGCTCCATAA 57.323 45.000 0.00 0.00 0.00 1.90
38 39 2.479837 CATCGTTTTAGCCGCTCCATA 58.520 47.619 0.00 0.00 0.00 2.74
39 40 1.299541 CATCGTTTTAGCCGCTCCAT 58.700 50.000 0.00 0.00 0.00 3.41
40 41 1.366111 GCATCGTTTTAGCCGCTCCA 61.366 55.000 0.00 0.00 0.00 3.86
41 42 1.090052 AGCATCGTTTTAGCCGCTCC 61.090 55.000 0.00 0.00 0.00 4.70
42 43 0.301987 GAGCATCGTTTTAGCCGCTC 59.698 55.000 0.00 0.00 39.10 5.03
43 44 1.090052 GGAGCATCGTTTTAGCCGCT 61.090 55.000 0.00 0.00 34.37 5.52
44 45 1.352056 GGAGCATCGTTTTAGCCGC 59.648 57.895 0.00 0.00 34.37 6.53
45 46 1.636340 CGGAGCATCGTTTTAGCCG 59.364 57.895 0.00 0.00 34.37 5.52
68 69 2.482333 CCTCTACCACGGAGCGGAG 61.482 68.421 0.00 0.00 31.69 4.63
69 70 2.439701 CCTCTACCACGGAGCGGA 60.440 66.667 0.00 0.00 31.69 5.54
70 71 2.439701 TCCTCTACCACGGAGCGG 60.440 66.667 0.00 0.00 34.73 5.52
71 72 3.111939 CTCCTCTACCACGGAGCG 58.888 66.667 0.00 0.00 40.27 5.03
74 75 0.034380 CTCCACTCCTCTACCACGGA 60.034 60.000 0.00 0.00 0.00 4.69
75 76 1.038130 CCTCCACTCCTCTACCACGG 61.038 65.000 0.00 0.00 0.00 4.94
76 77 1.038130 CCCTCCACTCCTCTACCACG 61.038 65.000 0.00 0.00 0.00 4.94
77 78 0.041386 ACCCTCCACTCCTCTACCAC 59.959 60.000 0.00 0.00 0.00 4.16
78 79 0.790993 AACCCTCCACTCCTCTACCA 59.209 55.000 0.00 0.00 0.00 3.25
79 80 2.386779 GTAACCCTCCACTCCTCTACC 58.613 57.143 0.00 0.00 0.00 3.18
80 81 2.292061 TGGTAACCCTCCACTCCTCTAC 60.292 54.545 0.00 0.00 0.00 2.59
81 82 2.005350 TGGTAACCCTCCACTCCTCTA 58.995 52.381 0.00 0.00 0.00 2.43
82 83 0.790993 TGGTAACCCTCCACTCCTCT 59.209 55.000 0.00 0.00 0.00 3.69
83 84 1.652947 TTGGTAACCCTCCACTCCTC 58.347 55.000 0.00 0.00 34.45 3.71
84 85 1.703513 GTTTGGTAACCCTCCACTCCT 59.296 52.381 0.00 0.00 34.45 3.69
85 86 1.422402 TGTTTGGTAACCCTCCACTCC 59.578 52.381 0.00 0.00 34.45 3.85
86 87 2.943036 TGTTTGGTAACCCTCCACTC 57.057 50.000 0.00 0.00 34.45 3.51
87 88 3.308188 GCTATGTTTGGTAACCCTCCACT 60.308 47.826 0.00 0.00 34.45 4.00
88 89 3.014623 GCTATGTTTGGTAACCCTCCAC 58.985 50.000 0.00 0.00 34.45 4.02
89 90 2.025699 GGCTATGTTTGGTAACCCTCCA 60.026 50.000 0.00 0.00 33.15 3.86
90 91 2.241430 AGGCTATGTTTGGTAACCCTCC 59.759 50.000 0.00 0.00 33.15 4.30
91 92 3.646736 AGGCTATGTTTGGTAACCCTC 57.353 47.619 0.00 0.00 33.15 4.30
92 93 3.458487 CCTAGGCTATGTTTGGTAACCCT 59.542 47.826 0.00 0.00 33.15 4.34
93 94 3.201487 ACCTAGGCTATGTTTGGTAACCC 59.799 47.826 9.30 0.00 33.15 4.11
94 95 4.498894 ACCTAGGCTATGTTTGGTAACC 57.501 45.455 9.30 0.00 33.15 2.85
95 96 9.049523 GTAAATACCTAGGCTATGTTTGGTAAC 57.950 37.037 9.30 4.77 34.34 2.50
96 97 8.212995 GGTAAATACCTAGGCTATGTTTGGTAA 58.787 37.037 9.30 0.00 43.10 2.85
97 98 7.347748 TGGTAAATACCTAGGCTATGTTTGGTA 59.652 37.037 9.30 9.51 46.58 3.25
98 99 6.159046 TGGTAAATACCTAGGCTATGTTTGGT 59.841 38.462 9.30 7.60 46.58 3.67
99 100 6.597562 TGGTAAATACCTAGGCTATGTTTGG 58.402 40.000 9.30 1.59 46.58 3.28
100 101 9.959721 ATATGGTAAATACCTAGGCTATGTTTG 57.040 33.333 9.30 0.00 46.58 2.93
106 107 9.443365 GGGATTATATGGTAAATACCTAGGCTA 57.557 37.037 9.30 0.82 46.58 3.93
107 108 8.136248 AGGGATTATATGGTAAATACCTAGGCT 58.864 37.037 9.30 0.00 43.38 4.58
108 109 8.333226 AGGGATTATATGGTAAATACCTAGGC 57.667 38.462 9.30 0.00 43.38 3.93
109 110 8.935741 GGAGGGATTATATGGTAAATACCTAGG 58.064 40.741 7.41 7.41 44.88 3.02
110 111 8.639761 CGGAGGGATTATATGGTAAATACCTAG 58.360 40.741 10.77 0.00 44.88 3.02
111 112 8.124430 ACGGAGGGATTATATGGTAAATACCTA 58.876 37.037 10.77 2.17 44.88 3.08
113 114 7.191593 ACGGAGGGATTATATGGTAAATACC 57.808 40.000 2.53 2.53 46.62 2.73
114 115 7.767659 GGAACGGAGGGATTATATGGTAAATAC 59.232 40.741 0.00 0.00 0.00 1.89
115 116 7.458488 TGGAACGGAGGGATTATATGGTAAATA 59.542 37.037 0.00 0.00 0.00 1.40
116 117 6.273730 TGGAACGGAGGGATTATATGGTAAAT 59.726 38.462 0.00 0.00 0.00 1.40
117 118 5.607592 TGGAACGGAGGGATTATATGGTAAA 59.392 40.000 0.00 0.00 0.00 2.01
118 119 5.156649 TGGAACGGAGGGATTATATGGTAA 58.843 41.667 0.00 0.00 0.00 2.85
119 120 4.754311 TGGAACGGAGGGATTATATGGTA 58.246 43.478 0.00 0.00 0.00 3.25
120 121 3.593942 TGGAACGGAGGGATTATATGGT 58.406 45.455 0.00 0.00 0.00 3.55
121 122 4.634012 TTGGAACGGAGGGATTATATGG 57.366 45.455 0.00 0.00 0.00 2.74
122 123 8.100791 TCTATTTTGGAACGGAGGGATTATATG 58.899 37.037 0.00 0.00 0.00 1.78
123 124 8.214721 TCTATTTTGGAACGGAGGGATTATAT 57.785 34.615 0.00 0.00 0.00 0.86
124 125 7.621006 TCTATTTTGGAACGGAGGGATTATA 57.379 36.000 0.00 0.00 0.00 0.98
125 126 6.509523 TCTATTTTGGAACGGAGGGATTAT 57.490 37.500 0.00 0.00 0.00 1.28
126 127 5.961398 TCTATTTTGGAACGGAGGGATTA 57.039 39.130 0.00 0.00 0.00 1.75
127 128 4.855298 TCTATTTTGGAACGGAGGGATT 57.145 40.909 0.00 0.00 0.00 3.01
128 129 4.412199 TCATCTATTTTGGAACGGAGGGAT 59.588 41.667 0.00 0.00 0.00 3.85
129 130 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
130 131 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
131 132 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
132 133 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
133 134 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
134 135 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
135 136 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
136 137 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
137 138 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
138 139 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
175 176 9.893305 CCGTTTTAAAATAGATGACTCAACTTT 57.107 29.630 3.52 0.00 0.00 2.66
176 177 9.280174 TCCGTTTTAAAATAGATGACTCAACTT 57.720 29.630 3.52 0.00 0.00 2.66
177 178 8.842358 TCCGTTTTAAAATAGATGACTCAACT 57.158 30.769 3.52 0.00 0.00 3.16
178 179 8.175716 CCTCCGTTTTAAAATAGATGACTCAAC 58.824 37.037 3.52 0.00 0.00 3.18
179 180 7.335924 CCCTCCGTTTTAAAATAGATGACTCAA 59.664 37.037 3.52 0.00 0.00 3.02
180 181 6.821665 CCCTCCGTTTTAAAATAGATGACTCA 59.178 38.462 3.52 0.00 0.00 3.41
181 182 7.046033 TCCCTCCGTTTTAAAATAGATGACTC 58.954 38.462 3.52 0.00 0.00 3.36
182 183 6.954232 TCCCTCCGTTTTAAAATAGATGACT 58.046 36.000 3.52 0.00 0.00 3.41
183 184 7.619964 TTCCCTCCGTTTTAAAATAGATGAC 57.380 36.000 3.52 0.00 0.00 3.06
184 185 9.555727 CTATTCCCTCCGTTTTAAAATAGATGA 57.444 33.333 3.52 2.28 30.43 2.92
185 186 9.338622 ACTATTCCCTCCGTTTTAAAATAGATG 57.661 33.333 3.52 2.01 32.32 2.90
186 187 9.916360 AACTATTCCCTCCGTTTTAAAATAGAT 57.084 29.630 3.52 0.00 32.32 1.98
187 188 9.743581 AAACTATTCCCTCCGTTTTAAAATAGA 57.256 29.630 3.52 3.61 32.32 1.98
188 189 9.783256 CAAACTATTCCCTCCGTTTTAAAATAG 57.217 33.333 3.52 1.99 33.52 1.73
189 190 8.741841 CCAAACTATTCCCTCCGTTTTAAAATA 58.258 33.333 3.52 0.00 0.00 1.40
190 191 7.452189 TCCAAACTATTCCCTCCGTTTTAAAAT 59.548 33.333 3.52 0.00 0.00 1.82
191 192 6.776603 TCCAAACTATTCCCTCCGTTTTAAAA 59.223 34.615 0.00 0.00 0.00 1.52
192 193 6.305411 TCCAAACTATTCCCTCCGTTTTAAA 58.695 36.000 0.00 0.00 0.00 1.52
193 194 5.878627 TCCAAACTATTCCCTCCGTTTTAA 58.121 37.500 0.00 0.00 0.00 1.52
194 195 5.248934 TCTCCAAACTATTCCCTCCGTTTTA 59.751 40.000 0.00 0.00 0.00 1.52
195 196 4.042435 TCTCCAAACTATTCCCTCCGTTTT 59.958 41.667 0.00 0.00 0.00 2.43
196 197 3.585732 TCTCCAAACTATTCCCTCCGTTT 59.414 43.478 0.00 0.00 0.00 3.60
197 198 3.178865 TCTCCAAACTATTCCCTCCGTT 58.821 45.455 0.00 0.00 0.00 4.44
198 199 2.766828 CTCTCCAAACTATTCCCTCCGT 59.233 50.000 0.00 0.00 0.00 4.69
199 200 2.483889 GCTCTCCAAACTATTCCCTCCG 60.484 54.545 0.00 0.00 0.00 4.63
200 201 2.505819 TGCTCTCCAAACTATTCCCTCC 59.494 50.000 0.00 0.00 0.00 4.30
201 202 3.914426 TGCTCTCCAAACTATTCCCTC 57.086 47.619 0.00 0.00 0.00 4.30
202 203 3.846588 TCTTGCTCTCCAAACTATTCCCT 59.153 43.478 0.00 0.00 31.94 4.20
203 204 4.222124 TCTTGCTCTCCAAACTATTCCC 57.778 45.455 0.00 0.00 31.94 3.97
204 205 6.375455 TCAAATCTTGCTCTCCAAACTATTCC 59.625 38.462 0.00 0.00 31.94 3.01
205 206 7.335422 TCTCAAATCTTGCTCTCCAAACTATTC 59.665 37.037 0.00 0.00 31.94 1.75
206 207 7.170965 TCTCAAATCTTGCTCTCCAAACTATT 58.829 34.615 0.00 0.00 31.94 1.73
228 229 0.179097 GTGTGCTCTCCCGGATTCTC 60.179 60.000 0.73 0.00 0.00 2.87
259 260 4.080919 TCAAACTCTCCATGTCATACTGGG 60.081 45.833 0.00 0.00 33.13 4.45
260 261 5.089970 TCAAACTCTCCATGTCATACTGG 57.910 43.478 0.00 0.00 0.00 4.00
262 263 9.388506 CTAAAATCAAACTCTCCATGTCATACT 57.611 33.333 0.00 0.00 0.00 2.12
263 264 8.616076 CCTAAAATCAAACTCTCCATGTCATAC 58.384 37.037 0.00 0.00 0.00 2.39
264 265 8.548025 TCCTAAAATCAAACTCTCCATGTCATA 58.452 33.333 0.00 0.00 0.00 2.15
265 266 7.405292 TCCTAAAATCAAACTCTCCATGTCAT 58.595 34.615 0.00 0.00 0.00 3.06
271 296 5.932303 CGAACTCCTAAAATCAAACTCTCCA 59.068 40.000 0.00 0.00 0.00 3.86
293 318 8.086522 AGCTTAGAAAATACAGACTACAAACGA 58.913 33.333 0.00 0.00 0.00 3.85
295 320 9.813080 CAAGCTTAGAAAATACAGACTACAAAC 57.187 33.333 0.00 0.00 0.00 2.93
296 321 8.504005 GCAAGCTTAGAAAATACAGACTACAAA 58.496 33.333 0.00 0.00 0.00 2.83
298 323 7.117812 GTGCAAGCTTAGAAAATACAGACTACA 59.882 37.037 0.00 0.00 0.00 2.74
299 324 7.332182 AGTGCAAGCTTAGAAAATACAGACTAC 59.668 37.037 0.00 0.00 0.00 2.73
300 325 7.386851 AGTGCAAGCTTAGAAAATACAGACTA 58.613 34.615 0.00 0.00 0.00 2.59
301 326 6.234177 AGTGCAAGCTTAGAAAATACAGACT 58.766 36.000 0.00 0.00 0.00 3.24
302 327 6.487689 AGTGCAAGCTTAGAAAATACAGAC 57.512 37.500 0.00 0.00 0.00 3.51
304 329 7.602517 ACTAGTGCAAGCTTAGAAAATACAG 57.397 36.000 0.00 0.00 0.00 2.74
305 330 7.444183 ACAACTAGTGCAAGCTTAGAAAATACA 59.556 33.333 0.00 0.00 0.00 2.29
306 331 7.807680 ACAACTAGTGCAAGCTTAGAAAATAC 58.192 34.615 0.00 0.00 0.00 1.89
307 332 7.979444 ACAACTAGTGCAAGCTTAGAAAATA 57.021 32.000 0.00 0.00 0.00 1.40
308 333 6.884280 ACAACTAGTGCAAGCTTAGAAAAT 57.116 33.333 0.00 0.00 0.00 1.82
309 334 6.693315 AACAACTAGTGCAAGCTTAGAAAA 57.307 33.333 0.00 0.00 0.00 2.29
310 335 6.094881 ACAAACAACTAGTGCAAGCTTAGAAA 59.905 34.615 0.00 0.00 0.00 2.52
315 351 4.718940 AACAAACAACTAGTGCAAGCTT 57.281 36.364 0.00 0.00 0.00 3.74
344 380 7.841956 TCCCTAGTTTTGAATTTGAAAACACA 58.158 30.769 21.04 10.80 43.03 3.72
431 469 2.026356 ACAAAGGCCAAAAGCAAAAGGT 60.026 40.909 5.01 0.00 46.50 3.50
473 511 2.356135 GGTTGGTATGTGGCTACTGTG 58.644 52.381 0.64 0.00 0.00 3.66
485 523 2.236395 CTCCTCCTTTGACGGTTGGTAT 59.764 50.000 0.00 0.00 0.00 2.73
487 525 0.396811 CTCCTCCTTTGACGGTTGGT 59.603 55.000 0.00 0.00 0.00 3.67
498 536 2.614134 ACTGTAGCAGTCTCCTCCTT 57.386 50.000 0.00 0.00 41.21 3.36
500 538 2.424246 GTGTACTGTAGCAGTCTCCTCC 59.576 54.545 4.95 0.00 41.21 4.30
504 542 4.617959 TGTTTGTGTACTGTAGCAGTCTC 58.382 43.478 4.95 2.03 41.21 3.36
519 557 0.874390 CGGACTGGTGGATGTTTGTG 59.126 55.000 0.00 0.00 0.00 3.33
550 596 2.737180 CACAGAGCTCGGTGTGGT 59.263 61.111 31.35 12.24 40.39 4.16
626 672 4.824515 CCGGAGAGGGAGCGGACT 62.825 72.222 0.00 0.00 35.97 3.85
774 852 1.612146 TTGGCTGGGGTCGATGAGA 60.612 57.895 0.00 0.00 0.00 3.27
1641 1764 2.281484 TTGAGCGGGTCAAGCACC 60.281 61.111 17.89 0.00 45.97 5.01
1698 1822 1.659794 GTTGTGCATGTCCACCACC 59.340 57.895 0.00 0.00 34.85 4.61
1932 2093 3.855255 TTCCAGTCACAAACTCATCCA 57.145 42.857 0.00 0.00 35.45 3.41
1939 2100 7.220108 GTCACAAAATAGTTTCCAGTCACAAAC 59.780 37.037 0.00 0.00 33.42 2.93
2023 2185 5.651530 TCTTTCTTTCAGCCTCATACGTAG 58.348 41.667 0.08 0.00 0.00 3.51
2024 2186 5.654603 TCTTTCTTTCAGCCTCATACGTA 57.345 39.130 0.00 0.00 0.00 3.57
2025 2187 4.537135 TCTTTCTTTCAGCCTCATACGT 57.463 40.909 0.00 0.00 0.00 3.57
2026 2188 5.006165 GTCATCTTTCTTTCAGCCTCATACG 59.994 44.000 0.00 0.00 0.00 3.06
2027 2189 6.112058 AGTCATCTTTCTTTCAGCCTCATAC 58.888 40.000 0.00 0.00 0.00 2.39
2028 2190 6.305272 AGTCATCTTTCTTTCAGCCTCATA 57.695 37.500 0.00 0.00 0.00 2.15
2029 2191 5.176741 AGTCATCTTTCTTTCAGCCTCAT 57.823 39.130 0.00 0.00 0.00 2.90
2030 2192 4.630644 AGTCATCTTTCTTTCAGCCTCA 57.369 40.909 0.00 0.00 0.00 3.86
2031 2193 6.581712 AGATAGTCATCTTTCTTTCAGCCTC 58.418 40.000 0.00 0.00 38.41 4.70
2032 2194 6.558488 AGATAGTCATCTTTCTTTCAGCCT 57.442 37.500 0.00 0.00 38.41 4.58
2033 2195 8.900983 AATAGATAGTCATCTTTCTTTCAGCC 57.099 34.615 0.00 0.00 41.84 4.85
2060 2222 9.190317 GTGGGAAGTTCATCTCCTTTTATTATT 57.810 33.333 5.01 0.00 0.00 1.40
2061 2223 7.780271 GGTGGGAAGTTCATCTCCTTTTATTAT 59.220 37.037 5.01 0.00 0.00 1.28
2062 2224 7.116736 GGTGGGAAGTTCATCTCCTTTTATTA 58.883 38.462 5.01 0.00 0.00 0.98
2063 2225 5.952347 GGTGGGAAGTTCATCTCCTTTTATT 59.048 40.000 5.01 0.00 0.00 1.40
2064 2226 5.015178 TGGTGGGAAGTTCATCTCCTTTTAT 59.985 40.000 5.01 0.00 0.00 1.40
2065 2227 4.352595 TGGTGGGAAGTTCATCTCCTTTTA 59.647 41.667 5.01 0.00 0.00 1.52
2066 2228 3.140144 TGGTGGGAAGTTCATCTCCTTTT 59.860 43.478 5.01 0.00 0.00 2.27
2067 2229 2.716424 TGGTGGGAAGTTCATCTCCTTT 59.284 45.455 5.01 0.00 0.00 3.11
2068 2230 2.348472 TGGTGGGAAGTTCATCTCCTT 58.652 47.619 5.01 0.00 0.00 3.36
2069 2231 2.044793 TGGTGGGAAGTTCATCTCCT 57.955 50.000 5.01 0.00 0.00 3.69
2070 2232 2.619074 CCTTGGTGGGAAGTTCATCTCC 60.619 54.545 5.01 7.29 0.00 3.71
2071 2233 2.716217 CCTTGGTGGGAAGTTCATCTC 58.284 52.381 5.01 0.00 0.00 2.75
2072 2234 2.887151 CCTTGGTGGGAAGTTCATCT 57.113 50.000 5.01 0.00 0.00 2.90
2132 2294 9.353999 GATTAACGTCCAGATATTTTGCTTTTT 57.646 29.630 0.00 0.00 0.00 1.94
2133 2295 8.739972 AGATTAACGTCCAGATATTTTGCTTTT 58.260 29.630 0.00 0.00 0.00 2.27
2134 2296 8.281212 AGATTAACGTCCAGATATTTTGCTTT 57.719 30.769 0.00 0.00 0.00 3.51
2135 2297 7.012421 GGAGATTAACGTCCAGATATTTTGCTT 59.988 37.037 0.00 0.00 32.55 3.91
2136 2298 6.483640 GGAGATTAACGTCCAGATATTTTGCT 59.516 38.462 0.00 0.00 32.55 3.91
2137 2299 6.483640 AGGAGATTAACGTCCAGATATTTTGC 59.516 38.462 7.51 0.00 35.02 3.68
2138 2300 7.928706 AGAGGAGATTAACGTCCAGATATTTTG 59.071 37.037 7.51 0.00 35.02 2.44
2139 2301 8.024145 AGAGGAGATTAACGTCCAGATATTTT 57.976 34.615 7.51 0.00 35.02 1.82
2140 2302 7.604657 AGAGGAGATTAACGTCCAGATATTT 57.395 36.000 7.51 0.00 35.02 1.40
2141 2303 7.507616 AGAAGAGGAGATTAACGTCCAGATATT 59.492 37.037 7.51 0.00 35.02 1.28
2142 2304 7.007723 AGAAGAGGAGATTAACGTCCAGATAT 58.992 38.462 7.51 0.00 35.02 1.63
2143 2305 6.366340 AGAAGAGGAGATTAACGTCCAGATA 58.634 40.000 7.51 0.00 35.02 1.98
2144 2306 5.205056 AGAAGAGGAGATTAACGTCCAGAT 58.795 41.667 7.51 0.00 35.02 2.90
2145 2307 4.601084 AGAAGAGGAGATTAACGTCCAGA 58.399 43.478 7.51 0.00 35.02 3.86
2146 2308 4.993029 AGAAGAGGAGATTAACGTCCAG 57.007 45.455 7.51 0.00 35.02 3.86
2147 2309 7.419711 AATAAGAAGAGGAGATTAACGTCCA 57.580 36.000 7.51 0.00 35.02 4.02
2148 2310 9.984190 AATAATAAGAAGAGGAGATTAACGTCC 57.016 33.333 0.00 0.00 0.00 4.79
2170 2332 9.904198 TCAAGGTCAGATGTCATTATGAAATAA 57.096 29.630 0.00 0.00 44.01 1.40
2172 2334 8.847196 CATCAAGGTCAGATGTCATTATGAAAT 58.153 33.333 0.00 0.00 38.40 2.17
2173 2335 8.217131 CATCAAGGTCAGATGTCATTATGAAA 57.783 34.615 0.00 0.00 38.40 2.69
2174 2336 7.797038 CATCAAGGTCAGATGTCATTATGAA 57.203 36.000 0.00 0.00 38.40 2.57
2184 2346 4.560311 CGGGAGATACATCAAGGTCAGATG 60.560 50.000 0.00 0.00 46.38 2.90
2185 2347 3.576118 CGGGAGATACATCAAGGTCAGAT 59.424 47.826 0.00 0.00 0.00 2.90
2186 2348 2.959030 CGGGAGATACATCAAGGTCAGA 59.041 50.000 0.00 0.00 0.00 3.27
2187 2349 2.695666 ACGGGAGATACATCAAGGTCAG 59.304 50.000 0.00 0.00 0.00 3.51
2188 2350 2.430694 CACGGGAGATACATCAAGGTCA 59.569 50.000 0.00 0.00 0.00 4.02
2189 2351 2.803492 GCACGGGAGATACATCAAGGTC 60.803 54.545 0.00 0.00 0.00 3.85
2190 2352 1.139058 GCACGGGAGATACATCAAGGT 59.861 52.381 0.00 0.00 0.00 3.50
2191 2353 1.541233 GGCACGGGAGATACATCAAGG 60.541 57.143 0.00 0.00 0.00 3.61
2192 2354 1.414181 AGGCACGGGAGATACATCAAG 59.586 52.381 0.00 0.00 0.00 3.02
2193 2355 1.496060 AGGCACGGGAGATACATCAA 58.504 50.000 0.00 0.00 0.00 2.57
2194 2356 2.364324 GTTAGGCACGGGAGATACATCA 59.636 50.000 0.00 0.00 0.00 3.07
2195 2357 2.288886 GGTTAGGCACGGGAGATACATC 60.289 54.545 0.00 0.00 0.00 3.06
2196 2358 1.692519 GGTTAGGCACGGGAGATACAT 59.307 52.381 0.00 0.00 0.00 2.29
2197 2359 1.117150 GGTTAGGCACGGGAGATACA 58.883 55.000 0.00 0.00 0.00 2.29
2198 2360 1.340568 GAGGTTAGGCACGGGAGATAC 59.659 57.143 0.00 0.00 0.00 2.24
2199 2361 1.217183 AGAGGTTAGGCACGGGAGATA 59.783 52.381 0.00 0.00 0.00 1.98
2200 2362 0.032017 AGAGGTTAGGCACGGGAGAT 60.032 55.000 0.00 0.00 0.00 2.75
2201 2363 0.683504 GAGAGGTTAGGCACGGGAGA 60.684 60.000 0.00 0.00 0.00 3.71
2202 2364 0.970937 TGAGAGGTTAGGCACGGGAG 60.971 60.000 0.00 0.00 0.00 4.30
2203 2365 1.077805 TGAGAGGTTAGGCACGGGA 59.922 57.895 0.00 0.00 0.00 5.14
2204 2366 1.218316 GTGAGAGGTTAGGCACGGG 59.782 63.158 0.00 0.00 0.00 5.28
2205 2367 4.913126 GTGAGAGGTTAGGCACGG 57.087 61.111 0.00 0.00 0.00 4.94
2206 2368 4.478195 CGTGAGAGGTTAGGCACG 57.522 61.111 0.00 0.00 46.25 5.34
2207 2369 1.000506 TGAACGTGAGAGGTTAGGCAC 59.999 52.381 0.00 0.00 0.00 5.01
2208 2370 1.334160 TGAACGTGAGAGGTTAGGCA 58.666 50.000 0.00 0.00 0.00 4.75
2209 2371 2.166664 AGATGAACGTGAGAGGTTAGGC 59.833 50.000 0.00 0.00 0.00 3.93
2210 2372 3.181485 GGAGATGAACGTGAGAGGTTAGG 60.181 52.174 0.00 0.00 0.00 2.69
2211 2373 3.444034 TGGAGATGAACGTGAGAGGTTAG 59.556 47.826 0.00 0.00 0.00 2.34
2212 2374 3.427573 TGGAGATGAACGTGAGAGGTTA 58.572 45.455 0.00 0.00 0.00 2.85
2213 2375 2.248248 TGGAGATGAACGTGAGAGGTT 58.752 47.619 0.00 0.00 0.00 3.50
2214 2376 1.924731 TGGAGATGAACGTGAGAGGT 58.075 50.000 0.00 0.00 0.00 3.85
2215 2377 3.193263 CATTGGAGATGAACGTGAGAGG 58.807 50.000 0.00 0.00 0.00 3.69
2216 2378 3.615937 CACATTGGAGATGAACGTGAGAG 59.384 47.826 0.00 0.00 0.00 3.20
2217 2379 3.258123 TCACATTGGAGATGAACGTGAGA 59.742 43.478 0.00 0.00 0.00 3.27
2218 2380 3.588955 TCACATTGGAGATGAACGTGAG 58.411 45.455 0.00 0.00 0.00 3.51
2219 2381 3.676291 TCACATTGGAGATGAACGTGA 57.324 42.857 0.00 0.00 0.00 4.35
2220 2382 3.996363 TCTTCACATTGGAGATGAACGTG 59.004 43.478 0.00 0.00 0.00 4.49
2221 2383 4.271696 TCTTCACATTGGAGATGAACGT 57.728 40.909 0.00 0.00 0.00 3.99
2222 2384 4.692625 ACTTCTTCACATTGGAGATGAACG 59.307 41.667 4.74 0.00 0.00 3.95
2223 2385 6.566197 AACTTCTTCACATTGGAGATGAAC 57.434 37.500 4.74 0.00 0.00 3.18
2224 2386 7.939039 ACTAAACTTCTTCACATTGGAGATGAA 59.061 33.333 4.74 8.41 0.00 2.57
2225 2387 7.453393 ACTAAACTTCTTCACATTGGAGATGA 58.547 34.615 4.74 0.00 0.00 2.92
2226 2388 7.678947 ACTAAACTTCTTCACATTGGAGATG 57.321 36.000 0.00 0.00 0.00 2.90
2227 2389 7.550906 GCTACTAAACTTCTTCACATTGGAGAT 59.449 37.037 0.00 0.00 0.00 2.75
2228 2390 6.874134 GCTACTAAACTTCTTCACATTGGAGA 59.126 38.462 0.00 0.00 0.00 3.71
2229 2391 6.092807 GGCTACTAAACTTCTTCACATTGGAG 59.907 42.308 0.00 0.00 0.00 3.86
2230 2392 5.938125 GGCTACTAAACTTCTTCACATTGGA 59.062 40.000 0.00 0.00 0.00 3.53
2231 2393 5.705441 TGGCTACTAAACTTCTTCACATTGG 59.295 40.000 0.00 0.00 0.00 3.16
2232 2394 6.650807 TCTGGCTACTAAACTTCTTCACATTG 59.349 38.462 0.00 0.00 0.00 2.82
2233 2395 6.769512 TCTGGCTACTAAACTTCTTCACATT 58.230 36.000 0.00 0.00 0.00 2.71
2234 2396 6.360370 TCTGGCTACTAAACTTCTTCACAT 57.640 37.500 0.00 0.00 0.00 3.21
2235 2397 5.279506 CCTCTGGCTACTAAACTTCTTCACA 60.280 44.000 0.00 0.00 0.00 3.58
2236 2398 5.172205 CCTCTGGCTACTAAACTTCTTCAC 58.828 45.833 0.00 0.00 0.00 3.18
2237 2399 4.838986 ACCTCTGGCTACTAAACTTCTTCA 59.161 41.667 0.00 0.00 0.00 3.02
2238 2400 5.408880 ACCTCTGGCTACTAAACTTCTTC 57.591 43.478 0.00 0.00 0.00 2.87
2239 2401 4.082136 CGACCTCTGGCTACTAAACTTCTT 60.082 45.833 0.00 0.00 0.00 2.52
2240 2402 3.444388 CGACCTCTGGCTACTAAACTTCT 59.556 47.826 0.00 0.00 0.00 2.85
2241 2403 3.442977 TCGACCTCTGGCTACTAAACTTC 59.557 47.826 0.00 0.00 0.00 3.01
2242 2404 3.193056 GTCGACCTCTGGCTACTAAACTT 59.807 47.826 3.51 0.00 0.00 2.66
2243 2405 2.754002 GTCGACCTCTGGCTACTAAACT 59.246 50.000 3.51 0.00 0.00 2.66
2244 2406 2.754002 AGTCGACCTCTGGCTACTAAAC 59.246 50.000 13.01 0.00 0.00 2.01
2245 2407 3.015327 GAGTCGACCTCTGGCTACTAAA 58.985 50.000 13.01 0.00 37.22 1.85
2246 2408 2.641305 GAGTCGACCTCTGGCTACTAA 58.359 52.381 13.01 0.00 37.22 2.24
2247 2409 1.134159 GGAGTCGACCTCTGGCTACTA 60.134 57.143 13.01 0.00 40.30 1.82
2248 2410 0.394625 GGAGTCGACCTCTGGCTACT 60.395 60.000 13.01 0.00 40.30 2.57
2249 2411 1.385756 GGGAGTCGACCTCTGGCTAC 61.386 65.000 13.01 0.00 40.30 3.58
2250 2412 1.076923 GGGAGTCGACCTCTGGCTA 60.077 63.158 13.01 0.00 40.30 3.93
2251 2413 2.363147 GGGAGTCGACCTCTGGCT 60.363 66.667 13.01 0.00 40.30 4.75
2252 2414 2.022240 GATGGGAGTCGACCTCTGGC 62.022 65.000 13.01 0.00 40.30 4.85
2253 2415 0.684479 TGATGGGAGTCGACCTCTGG 60.684 60.000 13.01 0.00 40.30 3.86
2254 2416 0.743688 CTGATGGGAGTCGACCTCTG 59.256 60.000 13.01 2.56 40.30 3.35
2255 2417 1.040339 GCTGATGGGAGTCGACCTCT 61.040 60.000 13.01 0.00 40.30 3.69
2256 2418 1.040339 AGCTGATGGGAGTCGACCTC 61.040 60.000 13.01 9.08 39.67 3.85
2257 2419 0.259065 TAGCTGATGGGAGTCGACCT 59.741 55.000 13.01 0.00 0.00 3.85
2258 2420 0.386113 GTAGCTGATGGGAGTCGACC 59.614 60.000 13.01 3.55 0.00 4.79
2259 2421 1.103803 TGTAGCTGATGGGAGTCGAC 58.896 55.000 7.70 7.70 0.00 4.20
2260 2422 1.847328 TTGTAGCTGATGGGAGTCGA 58.153 50.000 0.00 0.00 0.00 4.20
2261 2423 2.363680 AGATTGTAGCTGATGGGAGTCG 59.636 50.000 0.00 0.00 0.00 4.18
2262 2424 4.141846 TGAAGATTGTAGCTGATGGGAGTC 60.142 45.833 0.00 0.00 0.00 3.36
2263 2425 3.776969 TGAAGATTGTAGCTGATGGGAGT 59.223 43.478 0.00 0.00 0.00 3.85
2264 2426 4.412796 TGAAGATTGTAGCTGATGGGAG 57.587 45.455 0.00 0.00 0.00 4.30
2265 2427 4.842531 TTGAAGATTGTAGCTGATGGGA 57.157 40.909 0.00 0.00 0.00 4.37
2266 2428 6.294473 ACTATTGAAGATTGTAGCTGATGGG 58.706 40.000 0.00 0.00 0.00 4.00
2267 2429 7.798596 AACTATTGAAGATTGTAGCTGATGG 57.201 36.000 0.00 0.00 0.00 3.51
2280 2442 9.581289 TGGTTCCTGAAAAATAACTATTGAAGA 57.419 29.630 0.00 0.00 0.00 2.87
2281 2443 9.846248 CTGGTTCCTGAAAAATAACTATTGAAG 57.154 33.333 0.00 0.00 0.00 3.02
2282 2444 8.802267 CCTGGTTCCTGAAAAATAACTATTGAA 58.198 33.333 0.00 0.00 0.00 2.69
2283 2445 8.167392 TCCTGGTTCCTGAAAAATAACTATTGA 58.833 33.333 0.00 0.00 0.00 2.57
2284 2446 8.244113 GTCCTGGTTCCTGAAAAATAACTATTG 58.756 37.037 0.00 0.00 0.00 1.90
2285 2447 7.396339 GGTCCTGGTTCCTGAAAAATAACTATT 59.604 37.037 0.00 0.00 0.00 1.73
2286 2448 6.890268 GGTCCTGGTTCCTGAAAAATAACTAT 59.110 38.462 0.00 0.00 0.00 2.12
2287 2449 6.183361 TGGTCCTGGTTCCTGAAAAATAACTA 60.183 38.462 10.73 0.00 0.00 2.24
2288 2450 5.077564 GGTCCTGGTTCCTGAAAAATAACT 58.922 41.667 0.00 0.00 0.00 2.24
2289 2451 4.830600 TGGTCCTGGTTCCTGAAAAATAAC 59.169 41.667 10.73 0.00 0.00 1.89
2290 2452 5.068215 TGGTCCTGGTTCCTGAAAAATAA 57.932 39.130 10.73 0.00 0.00 1.40
2291 2453 4.733077 TGGTCCTGGTTCCTGAAAAATA 57.267 40.909 10.73 0.00 0.00 1.40
2292 2454 3.611025 TGGTCCTGGTTCCTGAAAAAT 57.389 42.857 10.73 0.00 0.00 1.82
2293 2455 3.390175 TTGGTCCTGGTTCCTGAAAAA 57.610 42.857 10.73 0.00 0.00 1.94
2294 2456 3.140144 AGATTGGTCCTGGTTCCTGAAAA 59.860 43.478 10.73 0.24 0.00 2.29
2295 2457 2.716424 AGATTGGTCCTGGTTCCTGAAA 59.284 45.455 10.73 0.51 0.00 2.69
2296 2458 2.348472 AGATTGGTCCTGGTTCCTGAA 58.652 47.619 10.73 1.06 0.00 3.02
2297 2459 2.044793 AGATTGGTCCTGGTTCCTGA 57.955 50.000 10.73 2.64 0.00 3.86
2298 2460 4.301072 TTTAGATTGGTCCTGGTTCCTG 57.699 45.455 10.73 0.00 0.00 3.86
2346 2508 7.149973 TGTCGACTATTAGTACAAGTTTTGCT 58.850 34.615 17.92 0.00 0.00 3.91
2354 2516 8.308931 ACTCCAAAATGTCGACTATTAGTACAA 58.691 33.333 17.92 0.00 0.00 2.41
2355 2517 7.833786 ACTCCAAAATGTCGACTATTAGTACA 58.166 34.615 17.92 0.00 0.00 2.90
2356 2518 8.592998 CAACTCCAAAATGTCGACTATTAGTAC 58.407 37.037 17.92 0.00 0.00 2.73
2358 2520 6.092259 GCAACTCCAAAATGTCGACTATTAGT 59.908 38.462 17.92 11.22 0.00 2.24
2370 2540 5.754406 TCATTTCTTGTGCAACTCCAAAATG 59.246 36.000 11.37 11.37 38.04 2.32
2404 2574 5.105392 CCCTAATTGCCTTGCATCTTTGTTA 60.105 40.000 0.00 0.00 38.76 2.41
2405 2575 4.322953 CCCTAATTGCCTTGCATCTTTGTT 60.323 41.667 0.00 0.00 38.76 2.83
2442 2612 1.207329 GTCTAGTTTGGTGGCTCGGAT 59.793 52.381 0.00 0.00 0.00 4.18
2445 2615 2.002586 CATGTCTAGTTTGGTGGCTCG 58.997 52.381 0.00 0.00 0.00 5.03
2458 2628 2.426522 GCACTGCAAACCTCATGTCTA 58.573 47.619 0.00 0.00 0.00 2.59
2497 2670 8.693542 TCTGTGCAATGATATCTAACATATCG 57.306 34.615 3.98 0.00 34.58 2.92
2501 2674 9.516546 AATCATCTGTGCAATGATATCTAACAT 57.483 29.630 11.76 0.00 41.79 2.71
2544 2725 4.369872 AGAGGATTGGAGGAAACTGATCT 58.630 43.478 0.00 0.00 44.43 2.75
2550 2731 3.759086 GGAACAAGAGGATTGGAGGAAAC 59.241 47.826 0.00 0.00 0.00 2.78
2555 2736 1.918957 AGGGGAACAAGAGGATTGGAG 59.081 52.381 0.00 0.00 0.00 3.86
2556 2737 1.916181 GAGGGGAACAAGAGGATTGGA 59.084 52.381 0.00 0.00 0.00 3.53
2557 2738 1.918957 AGAGGGGAACAAGAGGATTGG 59.081 52.381 0.00 0.00 0.00 3.16
2558 2739 2.573462 TGAGAGGGGAACAAGAGGATTG 59.427 50.000 0.00 0.00 0.00 2.67
2559 2740 2.921221 TGAGAGGGGAACAAGAGGATT 58.079 47.619 0.00 0.00 0.00 3.01
2560 2741 2.649742 TGAGAGGGGAACAAGAGGAT 57.350 50.000 0.00 0.00 0.00 3.24
2563 2744 2.092699 GGGAATGAGAGGGGAACAAGAG 60.093 54.545 0.00 0.00 0.00 2.85
2564 2745 1.916181 GGGAATGAGAGGGGAACAAGA 59.084 52.381 0.00 0.00 0.00 3.02
2565 2746 1.918957 AGGGAATGAGAGGGGAACAAG 59.081 52.381 0.00 0.00 0.00 3.16
2566 2747 2.059756 AGGGAATGAGAGGGGAACAA 57.940 50.000 0.00 0.00 0.00 2.83
2587 2768 0.793617 AGAAGGGAGGAGGGAGACAA 59.206 55.000 0.00 0.00 0.00 3.18
2598 2779 2.301296 TCTGCTCTGACAAAGAAGGGAG 59.699 50.000 0.00 0.00 33.37 4.30
2607 2788 2.874701 GTTCTTTGCTCTGCTCTGACAA 59.125 45.455 0.00 0.00 0.00 3.18
2636 2821 5.014966 AGCCTTCATATATCCATGGCTCTTT 59.985 40.000 6.96 0.00 44.99 2.52
2639 2824 4.500499 AGCCTTCATATATCCATGGCTC 57.500 45.455 6.96 0.00 44.99 4.70
2641 2826 4.455606 GGTAGCCTTCATATATCCATGGC 58.544 47.826 6.96 8.93 39.19 4.40
2643 2828 5.452496 CCTCGGTAGCCTTCATATATCCATG 60.452 48.000 0.00 0.00 0.00 3.66
2644 2829 4.651503 CCTCGGTAGCCTTCATATATCCAT 59.348 45.833 0.00 0.00 0.00 3.41
2645 2830 4.023980 CCTCGGTAGCCTTCATATATCCA 58.976 47.826 0.00 0.00 0.00 3.41
2647 2832 4.202070 GCTCCTCGGTAGCCTTCATATATC 60.202 50.000 0.00 0.00 33.73 1.63
2658 2843 3.597728 CCTCGGCTCCTCGGTAGC 61.598 72.222 0.00 0.00 39.33 3.58
2676 2861 5.359194 ACTTATTTCCATCTGGATCACGT 57.641 39.130 0.00 0.00 44.98 4.49
2705 2890 7.148557 GGTCTAAGATGTTTGTCTAGAACTTGC 60.149 40.741 0.00 0.00 0.00 4.01
2706 2891 7.872993 TGGTCTAAGATGTTTGTCTAGAACTTG 59.127 37.037 0.00 0.00 0.00 3.16
2708 2893 7.451877 TCTGGTCTAAGATGTTTGTCTAGAACT 59.548 37.037 0.00 0.00 0.00 3.01
2709 2894 7.603651 TCTGGTCTAAGATGTTTGTCTAGAAC 58.396 38.462 0.00 0.00 0.00 3.01
2711 2896 6.127591 GCTCTGGTCTAAGATGTTTGTCTAGA 60.128 42.308 0.00 0.00 0.00 2.43
2713 2898 5.393135 CGCTCTGGTCTAAGATGTTTGTCTA 60.393 44.000 0.00 0.00 0.00 2.59
2735 2920 2.758423 ACTTATTTTCCCATTGGACCGC 59.242 45.455 3.62 0.00 41.57 5.68
2758 2943 8.296000 GCAATGGTTATATTTTGGTTGCTTTTT 58.704 29.630 0.00 0.00 38.08 1.94
2766 2951 8.153550 TGTTTTCAGCAATGGTTATATTTTGGT 58.846 29.630 0.00 0.00 0.00 3.67
2767 2952 8.442384 GTGTTTTCAGCAATGGTTATATTTTGG 58.558 33.333 0.00 0.00 0.00 3.28
2772 2957 6.071447 TGCAGTGTTTTCAGCAATGGTTATAT 60.071 34.615 0.00 0.00 33.22 0.86
2804 2989 5.783875 ACTACACCCTTAACACCAAGATAGT 59.216 40.000 0.00 0.00 0.00 2.12
2818 3003 8.655901 GTCCTATACTACTACTACTACACCCTT 58.344 40.741 0.00 0.00 0.00 3.95
2842 3027 8.871125 TGGGATAAGGAATCTACAATTAGAGTC 58.129 37.037 1.39 1.39 45.07 3.36
2843 3028 8.798975 TGGGATAAGGAATCTACAATTAGAGT 57.201 34.615 0.00 0.00 37.77 3.24
2844 3029 8.875168 ACTGGGATAAGGAATCTACAATTAGAG 58.125 37.037 0.00 0.00 37.77 2.43
2845 3030 8.798975 ACTGGGATAAGGAATCTACAATTAGA 57.201 34.615 0.00 0.00 38.76 2.10
2846 3031 8.875168 AGACTGGGATAAGGAATCTACAATTAG 58.125 37.037 0.00 0.00 34.75 1.73
2847 3032 8.798975 AGACTGGGATAAGGAATCTACAATTA 57.201 34.615 0.00 0.00 34.75 1.40
2848 3033 7.698163 AGACTGGGATAAGGAATCTACAATT 57.302 36.000 0.00 0.00 34.75 2.32
2849 3034 8.013667 ACTAGACTGGGATAAGGAATCTACAAT 58.986 37.037 0.00 0.00 34.75 2.71
2850 3035 7.363031 ACTAGACTGGGATAAGGAATCTACAA 58.637 38.462 0.00 0.00 34.75 2.41
2851 3036 6.923670 ACTAGACTGGGATAAGGAATCTACA 58.076 40.000 0.00 0.00 34.75 2.74
2852 3037 8.165397 AGTACTAGACTGGGATAAGGAATCTAC 58.835 40.741 0.00 0.00 36.87 2.59
2853 3038 8.290463 AGTACTAGACTGGGATAAGGAATCTA 57.710 38.462 0.00 0.00 36.87 1.98
2854 3039 7.169287 AGTACTAGACTGGGATAAGGAATCT 57.831 40.000 0.00 0.00 36.87 2.40
2855 3040 7.121611 GCTAGTACTAGACTGGGATAAGGAATC 59.878 44.444 30.09 5.47 39.39 2.52
2856 3041 6.949463 GCTAGTACTAGACTGGGATAAGGAAT 59.051 42.308 30.09 0.00 39.39 3.01
2857 3042 6.305411 GCTAGTACTAGACTGGGATAAGGAA 58.695 44.000 30.09 0.00 39.39 3.36
2858 3043 5.222089 GGCTAGTACTAGACTGGGATAAGGA 60.222 48.000 30.09 0.00 39.39 3.36
2859 3044 5.011586 GGCTAGTACTAGACTGGGATAAGG 58.988 50.000 30.09 3.63 39.39 2.69
2860 3045 5.011586 GGGCTAGTACTAGACTGGGATAAG 58.988 50.000 30.36 6.16 40.99 1.73
2861 3046 4.668812 AGGGCTAGTACTAGACTGGGATAA 59.331 45.833 30.36 0.00 40.99 1.75
2862 3047 4.249490 AGGGCTAGTACTAGACTGGGATA 58.751 47.826 30.36 0.00 40.99 2.59
2863 3048 3.065175 AGGGCTAGTACTAGACTGGGAT 58.935 50.000 30.36 12.37 40.99 3.85
2864 3049 2.442502 GAGGGCTAGTACTAGACTGGGA 59.557 54.545 30.36 0.00 40.99 4.37
2865 3050 2.175069 TGAGGGCTAGTACTAGACTGGG 59.825 54.545 30.36 7.83 40.99 4.45
2866 3051 3.579534 TGAGGGCTAGTACTAGACTGG 57.420 52.381 30.36 8.51 40.99 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.