Multiple sequence alignment - TraesCS5D01G048800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G048800 chr5D 100.000 4151 0 0 1 4151 46605120 46609270 0.000000e+00 7666.0
1 TraesCS5D01G048800 chr5D 80.255 1413 168 59 1079 2427 46732712 46731347 0.000000e+00 961.0
2 TraesCS5D01G048800 chr5D 82.022 1207 145 39 1040 2207 47280689 47281862 0.000000e+00 961.0
3 TraesCS5D01G048800 chr5D 79.571 1165 169 39 1080 2196 46847550 46846407 0.000000e+00 769.0
4 TraesCS5D01G048800 chr5D 77.982 1249 193 47 1023 2211 48315039 48313813 0.000000e+00 708.0
5 TraesCS5D01G048800 chr5D 81.961 571 85 17 1825 2385 47087960 47087398 6.280000e-128 468.0
6 TraesCS5D01G048800 chr5D 75.510 931 139 57 2666 3581 46845931 46845075 1.410000e-99 374.0
7 TraesCS5D01G048800 chr5D 83.704 405 48 4 1823 2209 47916498 47916902 2.360000e-97 366.0
8 TraesCS5D01G048800 chr5D 82.822 326 41 10 1428 1742 47088336 47088015 1.140000e-70 278.0
9 TraesCS5D01G048800 chr5D 79.557 406 55 17 1825 2207 48657606 48658006 8.850000e-67 265.0
10 TraesCS5D01G048800 chr5D 74.096 691 133 29 1081 1739 48656865 48657541 4.150000e-60 243.0
11 TraesCS5D01G048800 chr5D 77.637 237 38 9 3186 3421 47086833 47086611 3.370000e-26 130.0
12 TraesCS5D01G048800 chr5B 94.085 2891 105 28 794 3663 48724388 48727233 0.000000e+00 4331.0
13 TraesCS5D01G048800 chr5B 93.878 735 31 3 6 740 685673249 685672529 0.000000e+00 1096.0
14 TraesCS5D01G048800 chr5B 80.466 1546 187 70 1062 2537 48931276 48929776 0.000000e+00 1075.0
15 TraesCS5D01G048800 chr5B 81.503 1211 153 38 1040 2207 50226699 50227881 0.000000e+00 929.0
16 TraesCS5D01G048800 chr5B 77.707 1413 200 63 1026 2357 50530124 50531502 0.000000e+00 758.0
17 TraesCS5D01G048800 chr5B 78.502 1228 183 52 1026 2196 51062269 51061066 0.000000e+00 730.0
18 TraesCS5D01G048800 chr5B 74.708 771 127 43 2666 3423 48979499 48978784 8.790000e-72 281.0
19 TraesCS5D01G048800 chr7D 96.477 738 21 2 6 739 518105218 518104482 0.000000e+00 1214.0
20 TraesCS5D01G048800 chr7D 90.444 743 62 4 6 739 597964532 597963790 0.000000e+00 970.0
21 TraesCS5D01G048800 chr7D 89.376 753 61 6 6 739 570482137 570482889 0.000000e+00 929.0
22 TraesCS5D01G048800 chr7D 93.333 45 3 0 740 784 185372712 185372756 2.680000e-07 67.6
23 TraesCS5D01G048800 chr3B 94.422 735 35 2 6 740 42349164 42349892 0.000000e+00 1125.0
24 TraesCS5D01G048800 chr4A 94.414 734 33 2 6 739 721941134 721941859 0.000000e+00 1122.0
25 TraesCS5D01G048800 chr1B 93.592 671 40 3 69 739 662640580 662639913 0.000000e+00 998.0
26 TraesCS5D01G048800 chr7B 90.361 747 61 4 6 742 23077933 23077188 0.000000e+00 970.0
27 TraesCS5D01G048800 chr1D 91.871 529 41 2 6 533 491866563 491867090 0.000000e+00 737.0
28 TraesCS5D01G048800 chr6A 95.604 455 19 1 287 740 23716404 23715950 0.000000e+00 728.0
29 TraesCS5D01G048800 chr5A 78.690 901 152 22 1316 2196 37780630 37779750 7.790000e-157 564.0
30 TraesCS5D01G048800 chr5A 75.707 778 122 42 2666 3423 37779273 37778543 1.110000e-85 327.0
31 TraesCS5D01G048800 chr5A 91.525 59 3 1 740 796 677490230 677490172 3.440000e-11 80.5
32 TraesCS5D01G048800 chrUn 95.253 316 9 3 6 320 18088512 18088822 2.880000e-136 496.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G048800 chr5D 46605120 46609270 4150 False 7666.0 7666 100.000000 1 4151 1 chr5D.!!$F1 4150
1 TraesCS5D01G048800 chr5D 46731347 46732712 1365 True 961.0 961 80.255000 1079 2427 1 chr5D.!!$R1 1348
2 TraesCS5D01G048800 chr5D 47280689 47281862 1173 False 961.0 961 82.022000 1040 2207 1 chr5D.!!$F2 1167
3 TraesCS5D01G048800 chr5D 48313813 48315039 1226 True 708.0 708 77.982000 1023 2211 1 chr5D.!!$R2 1188
4 TraesCS5D01G048800 chr5D 46845075 46847550 2475 True 571.5 769 77.540500 1080 3581 2 chr5D.!!$R3 2501
5 TraesCS5D01G048800 chr5D 47086611 47088336 1725 True 292.0 468 80.806667 1428 3421 3 chr5D.!!$R4 1993
6 TraesCS5D01G048800 chr5D 48656865 48658006 1141 False 254.0 265 76.826500 1081 2207 2 chr5D.!!$F4 1126
7 TraesCS5D01G048800 chr5B 48724388 48727233 2845 False 4331.0 4331 94.085000 794 3663 1 chr5B.!!$F1 2869
8 TraesCS5D01G048800 chr5B 685672529 685673249 720 True 1096.0 1096 93.878000 6 740 1 chr5B.!!$R4 734
9 TraesCS5D01G048800 chr5B 48929776 48931276 1500 True 1075.0 1075 80.466000 1062 2537 1 chr5B.!!$R1 1475
10 TraesCS5D01G048800 chr5B 50226699 50227881 1182 False 929.0 929 81.503000 1040 2207 1 chr5B.!!$F2 1167
11 TraesCS5D01G048800 chr5B 50530124 50531502 1378 False 758.0 758 77.707000 1026 2357 1 chr5B.!!$F3 1331
12 TraesCS5D01G048800 chr5B 51061066 51062269 1203 True 730.0 730 78.502000 1026 2196 1 chr5B.!!$R3 1170
13 TraesCS5D01G048800 chr5B 48978784 48979499 715 True 281.0 281 74.708000 2666 3423 1 chr5B.!!$R2 757
14 TraesCS5D01G048800 chr7D 518104482 518105218 736 True 1214.0 1214 96.477000 6 739 1 chr7D.!!$R1 733
15 TraesCS5D01G048800 chr7D 597963790 597964532 742 True 970.0 970 90.444000 6 739 1 chr7D.!!$R2 733
16 TraesCS5D01G048800 chr7D 570482137 570482889 752 False 929.0 929 89.376000 6 739 1 chr7D.!!$F2 733
17 TraesCS5D01G048800 chr3B 42349164 42349892 728 False 1125.0 1125 94.422000 6 740 1 chr3B.!!$F1 734
18 TraesCS5D01G048800 chr4A 721941134 721941859 725 False 1122.0 1122 94.414000 6 739 1 chr4A.!!$F1 733
19 TraesCS5D01G048800 chr1B 662639913 662640580 667 True 998.0 998 93.592000 69 739 1 chr1B.!!$R1 670
20 TraesCS5D01G048800 chr7B 23077188 23077933 745 True 970.0 970 90.361000 6 742 1 chr7B.!!$R1 736
21 TraesCS5D01G048800 chr1D 491866563 491867090 527 False 737.0 737 91.871000 6 533 1 chr1D.!!$F1 527
22 TraesCS5D01G048800 chr5A 37778543 37780630 2087 True 445.5 564 77.198500 1316 3423 2 chr5A.!!$R2 2107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 152 0.450184 GTTGCCGTTGTCACTGTTGT 59.550 50.0 0.0 0.0 0.00 3.32 F
1801 1906 0.402504 ACATTTTGGGGACAGGCGTA 59.597 50.0 0.0 0.0 44.54 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2246 0.740737 CCCAATCACCTTTCCATCGC 59.259 55.0 0.00 0.00 0.0 4.58 R
3715 4058 0.107831 TAGGCGCCAAACTTGAGTGT 59.892 50.0 31.54 5.27 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 152 0.450184 GTTGCCGTTGTCACTGTTGT 59.550 50.000 0.00 0.00 0.00 3.32
188 193 5.830912 TGAAGATTGTGAAAAATGCTTCGT 58.169 33.333 0.00 0.00 32.39 3.85
534 550 2.957402 TGGCTCTGTTGGATGAAGTT 57.043 45.000 0.00 0.00 0.00 2.66
635 666 6.428159 GGCTCACTCGACAATTAATATGGATT 59.572 38.462 0.00 0.00 0.00 3.01
661 692 7.443879 TGAAGAGAGCATTTGTGTACAACATAA 59.556 33.333 0.00 0.00 38.99 1.90
711 742 2.580322 TCTTATTGATGAGTGCCCCCAA 59.420 45.455 0.00 0.00 0.00 4.12
713 744 2.555732 ATTGATGAGTGCCCCCAATT 57.444 45.000 0.00 0.00 0.00 2.32
715 746 3.464720 TTGATGAGTGCCCCCAATTAA 57.535 42.857 0.00 0.00 0.00 1.40
745 776 3.234730 GTCCGCCCCTGATCCGAT 61.235 66.667 0.00 0.00 0.00 4.18
746 777 1.906824 GTCCGCCCCTGATCCGATA 60.907 63.158 0.00 0.00 0.00 2.92
747 778 1.906824 TCCGCCCCTGATCCGATAC 60.907 63.158 0.00 0.00 0.00 2.24
748 779 1.908793 CCGCCCCTGATCCGATACT 60.909 63.158 0.00 0.00 0.00 2.12
749 780 0.611062 CCGCCCCTGATCCGATACTA 60.611 60.000 0.00 0.00 0.00 1.82
750 781 0.526662 CGCCCCTGATCCGATACTAC 59.473 60.000 0.00 0.00 0.00 2.73
751 782 1.629043 GCCCCTGATCCGATACTACA 58.371 55.000 0.00 0.00 0.00 2.74
752 783 2.180276 GCCCCTGATCCGATACTACAT 58.820 52.381 0.00 0.00 0.00 2.29
753 784 2.093973 GCCCCTGATCCGATACTACATG 60.094 54.545 0.00 0.00 0.00 3.21
754 785 2.497675 CCCCTGATCCGATACTACATGG 59.502 54.545 0.00 0.00 0.00 3.66
755 786 2.093973 CCCTGATCCGATACTACATGGC 60.094 54.545 0.00 0.00 0.00 4.40
756 787 2.562738 CCTGATCCGATACTACATGGCA 59.437 50.000 0.00 0.00 0.00 4.92
757 788 3.196469 CCTGATCCGATACTACATGGCAT 59.804 47.826 0.00 0.00 0.00 4.40
758 789 4.179298 CTGATCCGATACTACATGGCATG 58.821 47.826 25.31 25.31 0.00 4.06
759 790 3.578282 TGATCCGATACTACATGGCATGT 59.422 43.478 33.18 33.18 46.92 3.21
760 791 3.385193 TCCGATACTACATGGCATGTG 57.615 47.619 36.61 27.85 44.60 3.21
761 792 2.962421 TCCGATACTACATGGCATGTGA 59.038 45.455 36.61 22.90 44.60 3.58
762 793 3.005791 TCCGATACTACATGGCATGTGAG 59.994 47.826 36.61 29.01 44.60 3.51
763 794 3.320626 CGATACTACATGGCATGTGAGG 58.679 50.000 36.61 27.40 44.60 3.86
764 795 2.620251 TACTACATGGCATGTGAGGC 57.380 50.000 36.61 0.00 44.60 4.70
779 810 3.006677 GGCATCACCTTGGGGCTA 58.993 61.111 0.00 0.00 35.63 3.93
780 811 1.453928 GGCATCACCTTGGGGCTAC 60.454 63.158 0.00 0.00 35.63 3.58
781 812 1.819632 GCATCACCTTGGGGCTACG 60.820 63.158 0.00 0.00 35.63 3.51
782 813 1.819632 CATCACCTTGGGGCTACGC 60.820 63.158 0.00 0.00 35.63 4.42
783 814 2.297895 ATCACCTTGGGGCTACGCA 61.298 57.895 0.00 0.00 37.82 5.24
784 815 2.257409 ATCACCTTGGGGCTACGCAG 62.257 60.000 0.00 0.00 40.88 5.18
785 816 3.717294 ACCTTGGGGCTACGCAGG 61.717 66.667 0.00 0.00 40.88 4.85
810 841 2.433604 TGCCCTTGCAAGTTCAAATTCA 59.566 40.909 24.35 7.66 46.66 2.57
814 845 5.730289 GCCCTTGCAAGTTCAAATTCAAAAC 60.730 40.000 24.35 0.00 37.47 2.43
817 848 6.419980 TTGCAAGTTCAAATTCAAAACCAG 57.580 33.333 0.00 0.00 0.00 4.00
818 849 4.874966 TGCAAGTTCAAATTCAAAACCAGG 59.125 37.500 0.00 0.00 0.00 4.45
827 858 6.836527 TCAAATTCAAAACCAGGGAGAGTTTA 59.163 34.615 0.00 0.00 35.19 2.01
831 862 4.891168 TCAAAACCAGGGAGAGTTTAAACC 59.109 41.667 14.72 6.71 35.19 3.27
834 865 3.053826 ACCAGGGAGAGTTTAAACCTGT 58.946 45.455 14.72 0.00 45.57 4.00
835 866 4.237018 ACCAGGGAGAGTTTAAACCTGTA 58.763 43.478 14.72 0.00 45.57 2.74
836 867 4.041321 ACCAGGGAGAGTTTAAACCTGTAC 59.959 45.833 14.72 3.62 45.57 2.90
839 870 6.351117 CCAGGGAGAGTTTAAACCTGTACTAG 60.351 46.154 14.72 0.00 45.57 2.57
868 899 1.542544 GTACGAGATACGCAACGCTT 58.457 50.000 0.00 0.00 46.94 4.68
962 994 2.058705 TCCACAGTACCCAAACATCCA 58.941 47.619 0.00 0.00 0.00 3.41
966 998 2.288666 CAGTACCCAAACATCCATCGG 58.711 52.381 0.00 0.00 0.00 4.18
972 1004 1.451387 AAACATCCATCGGACCGCC 60.451 57.895 9.66 0.00 32.98 6.13
973 1005 1.910580 AAACATCCATCGGACCGCCT 61.911 55.000 9.66 0.00 32.98 5.52
974 1006 2.029666 CATCCATCGGACCGCCTC 59.970 66.667 9.66 0.00 32.98 4.70
975 1007 3.234730 ATCCATCGGACCGCCTCC 61.235 66.667 9.66 0.00 32.98 4.30
1407 1475 2.437359 GTCAGCGGCCAGATGCTT 60.437 61.111 2.24 0.00 40.03 3.91
1777 1882 2.815647 GCGCACCTACAGACAGCC 60.816 66.667 0.30 0.00 0.00 4.85
1779 1884 1.005037 CGCACCTACAGACAGCCAA 60.005 57.895 0.00 0.00 0.00 4.52
1801 1906 0.402504 ACATTTTGGGGACAGGCGTA 59.597 50.000 0.00 0.00 44.54 4.42
2099 2246 3.532792 CGTCGTCGTGGACATGCG 61.533 66.667 0.00 0.00 36.73 4.73
2106 2253 2.511373 GTGGACATGCGCGATGGA 60.511 61.111 12.10 0.00 36.23 3.41
2212 2377 2.966915 TCCCTACGCCAGGTATGTATT 58.033 47.619 3.20 0.00 43.80 1.89
2213 2378 4.116782 TCCCTACGCCAGGTATGTATTA 57.883 45.455 3.20 0.00 43.80 0.98
2215 2380 5.088730 TCCCTACGCCAGGTATGTATTAAT 58.911 41.667 3.20 0.00 43.80 1.40
2216 2381 5.046878 TCCCTACGCCAGGTATGTATTAATG 60.047 44.000 0.00 0.00 43.80 1.90
2217 2382 5.279809 CCCTACGCCAGGTATGTATTAATGT 60.280 44.000 0.00 0.00 43.80 2.71
2218 2383 6.071221 CCCTACGCCAGGTATGTATTAATGTA 60.071 42.308 0.00 0.00 43.80 2.29
2219 2384 7.364408 CCCTACGCCAGGTATGTATTAATGTAT 60.364 40.741 0.00 0.00 43.80 2.29
2220 2385 7.491372 CCTACGCCAGGTATGTATTAATGTATG 59.509 40.741 0.00 0.00 39.91 2.39
2221 2386 6.765403 ACGCCAGGTATGTATTAATGTATGT 58.235 36.000 0.00 0.00 0.00 2.29
2222 2387 7.898918 ACGCCAGGTATGTATTAATGTATGTA 58.101 34.615 0.00 0.00 0.00 2.29
2244 2409 8.039603 TGTAACACCAGCTTGTTTAATCTATG 57.960 34.615 8.99 0.00 40.29 2.23
2402 2596 9.281371 CATGTCATAGATGGTAGTGATGAATTT 57.719 33.333 0.00 0.00 0.00 1.82
2421 2621 8.439993 TGAATTTAGCGTTGCCACTAATATTA 57.560 30.769 0.00 0.00 0.00 0.98
2458 2660 6.186957 TGCAACAGACTTGGATATATTGGTT 58.813 36.000 0.00 0.00 0.00 3.67
2549 2754 2.224066 GGCAGTGGTTCATACTAGCGAT 60.224 50.000 0.00 0.00 0.00 4.58
2552 2757 4.433615 CAGTGGTTCATACTAGCGATTGT 58.566 43.478 0.00 0.00 0.00 2.71
2556 2761 3.871594 GGTTCATACTAGCGATTGTGCTT 59.128 43.478 0.00 0.00 44.46 3.91
2557 2762 4.025647 GGTTCATACTAGCGATTGTGCTTC 60.026 45.833 0.00 0.00 44.46 3.86
2558 2763 4.385358 TCATACTAGCGATTGTGCTTCA 57.615 40.909 0.00 0.00 44.46 3.02
2559 2764 4.948847 TCATACTAGCGATTGTGCTTCAT 58.051 39.130 0.00 0.00 44.46 2.57
2560 2765 4.746611 TCATACTAGCGATTGTGCTTCATG 59.253 41.667 0.00 0.00 44.46 3.07
2562 2767 3.338249 ACTAGCGATTGTGCTTCATGTT 58.662 40.909 0.00 0.00 44.46 2.71
2563 2768 2.907910 AGCGATTGTGCTTCATGTTC 57.092 45.000 0.00 0.00 44.46 3.18
2564 2769 1.470098 AGCGATTGTGCTTCATGTTCC 59.530 47.619 0.00 0.00 44.46 3.62
2565 2770 1.468054 GCGATTGTGCTTCATGTTCCC 60.468 52.381 0.00 0.00 0.00 3.97
2566 2771 2.086869 CGATTGTGCTTCATGTTCCCT 58.913 47.619 0.00 0.00 0.00 4.20
2567 2772 2.489329 CGATTGTGCTTCATGTTCCCTT 59.511 45.455 0.00 0.00 0.00 3.95
2568 2773 3.426695 CGATTGTGCTTCATGTTCCCTTC 60.427 47.826 0.00 0.00 0.00 3.46
2569 2774 2.655090 TGTGCTTCATGTTCCCTTCA 57.345 45.000 0.00 0.00 0.00 3.02
2570 2775 2.507484 TGTGCTTCATGTTCCCTTCAG 58.493 47.619 0.00 0.00 0.00 3.02
2571 2776 1.200948 GTGCTTCATGTTCCCTTCAGC 59.799 52.381 0.00 0.00 0.00 4.26
2572 2777 0.813821 GCTTCATGTTCCCTTCAGCC 59.186 55.000 0.00 0.00 0.00 4.85
2573 2778 1.887956 GCTTCATGTTCCCTTCAGCCA 60.888 52.381 0.00 0.00 0.00 4.75
2574 2779 2.731572 CTTCATGTTCCCTTCAGCCAT 58.268 47.619 0.00 0.00 0.00 4.40
2575 2780 2.133281 TCATGTTCCCTTCAGCCATG 57.867 50.000 0.00 0.00 35.39 3.66
2576 2781 0.458669 CATGTTCCCTTCAGCCATGC 59.541 55.000 0.00 0.00 0.00 4.06
2577 2782 0.040058 ATGTTCCCTTCAGCCATGCA 59.960 50.000 0.00 0.00 0.00 3.96
2578 2783 0.040058 TGTTCCCTTCAGCCATGCAT 59.960 50.000 0.00 0.00 0.00 3.96
2579 2784 0.458669 GTTCCCTTCAGCCATGCATG 59.541 55.000 20.19 20.19 0.00 4.06
2580 2785 1.324740 TTCCCTTCAGCCATGCATGC 61.325 55.000 21.69 11.82 0.00 4.06
2581 2786 1.756950 CCCTTCAGCCATGCATGCT 60.757 57.895 21.69 17.96 40.41 3.79
2582 2787 1.734137 CCTTCAGCCATGCATGCTC 59.266 57.895 21.69 14.30 36.81 4.26
2583 2788 1.734137 CTTCAGCCATGCATGCTCC 59.266 57.895 21.69 11.17 36.81 4.70
2584 2789 0.752009 CTTCAGCCATGCATGCTCCT 60.752 55.000 21.69 13.22 36.81 3.69
2585 2790 1.035385 TTCAGCCATGCATGCTCCTG 61.035 55.000 21.69 22.72 36.81 3.86
2586 2791 1.753078 CAGCCATGCATGCTCCTGT 60.753 57.895 21.69 0.00 36.81 4.00
2598 2803 5.588246 TGCATGCTCCTGTTATTTATCGAAA 59.412 36.000 20.33 0.00 0.00 3.46
2605 2810 5.286797 TCCTGTTATTTATCGAAACGTGTCG 59.713 40.000 22.18 22.18 42.48 4.35
2619 2832 1.799181 CGTGTCGGATTAGGTGAGCAG 60.799 57.143 0.00 0.00 0.00 4.24
2730 3014 6.237835 GGACGATGTCTAAACACACATACATG 60.238 42.308 0.00 0.00 38.48 3.21
2731 3015 5.580691 ACGATGTCTAAACACACATACATGG 59.419 40.000 0.00 0.00 38.48 3.66
2733 3017 6.092122 CGATGTCTAAACACACATACATGGTT 59.908 38.462 0.00 0.00 38.48 3.67
2830 3134 8.207545 AGATATCTTAAGGATGTTGTCTTCACC 58.792 37.037 0.00 0.00 35.98 4.02
2867 3188 4.816925 GCACCTCTTTTTACTGAACTGACT 59.183 41.667 0.00 0.00 0.00 3.41
2997 3319 0.173255 CATTTCCGCCGGCTCATTTT 59.827 50.000 26.68 1.41 0.00 1.82
3328 3668 6.073276 TGTTGTAATGATGACCACTCTTTTCG 60.073 38.462 0.00 0.00 0.00 3.46
3465 3806 7.817962 AGATGTATAAATGGACTATAACGGCAC 59.182 37.037 0.00 0.00 0.00 5.01
3481 3822 1.610522 GGCACTTGTGTTCATTCAGCT 59.389 47.619 2.61 0.00 0.00 4.24
3556 3899 6.502136 CCTTTTCAGGTTCTGGAACTAATC 57.498 41.667 12.34 0.00 40.94 1.75
3608 3951 3.230134 TGGTGGTTTGGAGAAAATCTGG 58.770 45.455 0.00 0.00 29.54 3.86
3667 4010 8.324191 TCTCATTTAGTGGGAAATCTATCACT 57.676 34.615 0.00 0.00 42.32 3.41
3668 4011 9.434275 TCTCATTTAGTGGGAAATCTATCACTA 57.566 33.333 0.00 0.00 40.45 2.74
3674 4017 9.998106 TTAGTGGGAAATCTATCACTAATAAGC 57.002 33.333 9.75 0.00 43.47 3.09
3675 4018 8.268878 AGTGGGAAATCTATCACTAATAAGCT 57.731 34.615 0.00 0.00 38.52 3.74
3676 4019 8.371699 AGTGGGAAATCTATCACTAATAAGCTC 58.628 37.037 0.00 0.00 38.52 4.09
3677 4020 8.150945 GTGGGAAATCTATCACTAATAAGCTCA 58.849 37.037 0.00 0.00 0.00 4.26
3678 4021 8.150945 TGGGAAATCTATCACTAATAAGCTCAC 58.849 37.037 0.00 0.00 0.00 3.51
3679 4022 8.150945 GGGAAATCTATCACTAATAAGCTCACA 58.849 37.037 0.00 0.00 0.00 3.58
3680 4023 9.717942 GGAAATCTATCACTAATAAGCTCACAT 57.282 33.333 0.00 0.00 0.00 3.21
3685 4028 9.143155 TCTATCACTAATAAGCTCACATAACCA 57.857 33.333 0.00 0.00 0.00 3.67
3686 4029 9.197694 CTATCACTAATAAGCTCACATAACCAC 57.802 37.037 0.00 0.00 0.00 4.16
3687 4030 6.941857 TCACTAATAAGCTCACATAACCACA 58.058 36.000 0.00 0.00 0.00 4.17
3688 4031 6.816640 TCACTAATAAGCTCACATAACCACAC 59.183 38.462 0.00 0.00 0.00 3.82
3689 4032 6.818644 CACTAATAAGCTCACATAACCACACT 59.181 38.462 0.00 0.00 0.00 3.55
3690 4033 7.334421 CACTAATAAGCTCACATAACCACACTT 59.666 37.037 0.00 0.00 0.00 3.16
3691 4034 8.537016 ACTAATAAGCTCACATAACCACACTTA 58.463 33.333 0.00 0.00 0.00 2.24
3692 4035 7.611213 AATAAGCTCACATAACCACACTTAC 57.389 36.000 0.00 0.00 0.00 2.34
3693 4036 4.891992 AGCTCACATAACCACACTTACT 57.108 40.909 0.00 0.00 0.00 2.24
3694 4037 5.228945 AGCTCACATAACCACACTTACTT 57.771 39.130 0.00 0.00 0.00 2.24
3695 4038 5.621193 AGCTCACATAACCACACTTACTTT 58.379 37.500 0.00 0.00 0.00 2.66
3696 4039 6.062095 AGCTCACATAACCACACTTACTTTT 58.938 36.000 0.00 0.00 0.00 2.27
3697 4040 6.546034 AGCTCACATAACCACACTTACTTTTT 59.454 34.615 0.00 0.00 0.00 1.94
3714 4057 2.032680 TTTTAGCGGGACACATAGCC 57.967 50.000 0.00 0.00 0.00 3.93
3715 4058 0.906066 TTTAGCGGGACACATAGCCA 59.094 50.000 0.00 0.00 0.00 4.75
3716 4059 0.177141 TTAGCGGGACACATAGCCAC 59.823 55.000 0.00 0.00 0.00 5.01
3717 4060 0.973496 TAGCGGGACACATAGCCACA 60.973 55.000 0.00 0.00 0.00 4.17
3718 4061 2.106683 GCGGGACACATAGCCACAC 61.107 63.158 0.00 0.00 0.00 3.82
3719 4062 1.596934 CGGGACACATAGCCACACT 59.403 57.895 0.00 0.00 0.00 3.55
3720 4063 0.460284 CGGGACACATAGCCACACTC 60.460 60.000 0.00 0.00 0.00 3.51
3721 4064 0.613260 GGGACACATAGCCACACTCA 59.387 55.000 0.00 0.00 0.00 3.41
3722 4065 1.003118 GGGACACATAGCCACACTCAA 59.997 52.381 0.00 0.00 0.00 3.02
3723 4066 2.350522 GGACACATAGCCACACTCAAG 58.649 52.381 0.00 0.00 0.00 3.02
3724 4067 2.289694 GGACACATAGCCACACTCAAGT 60.290 50.000 0.00 0.00 0.00 3.16
3725 4068 3.403038 GACACATAGCCACACTCAAGTT 58.597 45.455 0.00 0.00 0.00 2.66
3726 4069 3.815401 GACACATAGCCACACTCAAGTTT 59.185 43.478 0.00 0.00 0.00 2.66
3727 4070 3.565482 ACACATAGCCACACTCAAGTTTG 59.435 43.478 0.00 0.00 0.00 2.93
3728 4071 3.058016 CACATAGCCACACTCAAGTTTGG 60.058 47.826 10.38 10.38 45.99 3.28
3731 4074 1.008538 CCACACTCAAGTTTGGCGC 60.009 57.895 0.00 0.00 38.81 6.53
3732 4075 1.008538 CACACTCAAGTTTGGCGCC 60.009 57.895 22.73 22.73 0.00 6.53
3733 4076 1.152963 ACACTCAAGTTTGGCGCCT 60.153 52.632 29.70 3.37 0.00 5.52
3734 4077 0.107831 ACACTCAAGTTTGGCGCCTA 59.892 50.000 29.70 19.10 0.00 3.93
3735 4078 1.271379 ACACTCAAGTTTGGCGCCTAT 60.271 47.619 29.70 7.79 0.00 2.57
3736 4079 2.027561 ACACTCAAGTTTGGCGCCTATA 60.028 45.455 29.70 10.40 0.00 1.31
3737 4080 3.006940 CACTCAAGTTTGGCGCCTATAA 58.993 45.455 29.70 16.16 0.00 0.98
3738 4081 3.438781 CACTCAAGTTTGGCGCCTATAAA 59.561 43.478 29.70 17.33 0.00 1.40
3739 4082 3.439129 ACTCAAGTTTGGCGCCTATAAAC 59.561 43.478 29.70 27.21 35.19 2.01
3740 4083 2.750712 TCAAGTTTGGCGCCTATAAACC 59.249 45.455 27.82 15.55 35.48 3.27
3741 4084 2.752903 CAAGTTTGGCGCCTATAAACCT 59.247 45.455 27.82 17.98 35.48 3.50
3742 4085 3.918294 AGTTTGGCGCCTATAAACCTA 57.082 42.857 27.82 5.32 35.48 3.08
3743 4086 4.224991 AGTTTGGCGCCTATAAACCTAA 57.775 40.909 27.82 10.91 35.48 2.69
3744 4087 4.196971 AGTTTGGCGCCTATAAACCTAAG 58.803 43.478 27.82 0.00 35.48 2.18
3745 4088 2.922740 TGGCGCCTATAAACCTAAGG 57.077 50.000 29.70 0.00 0.00 2.69
3746 4089 2.121129 TGGCGCCTATAAACCTAAGGT 58.879 47.619 29.70 0.00 37.65 3.50
3748 4091 2.876550 GGCGCCTATAAACCTAAGGTTG 59.123 50.000 22.15 0.00 46.20 3.77
3749 4092 2.289820 GCGCCTATAAACCTAAGGTTGC 59.710 50.000 0.00 0.00 46.20 4.17
3750 4093 2.876550 CGCCTATAAACCTAAGGTTGCC 59.123 50.000 0.00 0.00 46.20 4.52
3751 4094 3.683281 CGCCTATAAACCTAAGGTTGCCA 60.683 47.826 0.00 0.00 46.20 4.92
3752 4095 3.883489 GCCTATAAACCTAAGGTTGCCAG 59.117 47.826 0.00 0.00 46.20 4.85
3753 4096 3.883489 CCTATAAACCTAAGGTTGCCAGC 59.117 47.826 0.00 0.00 46.20 4.85
3754 4097 2.961531 TAAACCTAAGGTTGCCAGCA 57.038 45.000 0.00 0.00 46.20 4.41
3755 4098 1.328279 AAACCTAAGGTTGCCAGCAC 58.672 50.000 0.00 0.00 46.20 4.40
3756 4099 0.539669 AACCTAAGGTTGCCAGCACC 60.540 55.000 0.00 0.00 45.07 5.01
3757 4100 2.040544 CCTAAGGTTGCCAGCACCG 61.041 63.158 0.00 0.00 0.00 4.94
3758 4101 2.033448 TAAGGTTGCCAGCACCGG 59.967 61.111 0.00 0.00 0.00 5.28
3759 4102 2.463589 CTAAGGTTGCCAGCACCGGA 62.464 60.000 9.46 0.00 0.00 5.14
3760 4103 2.463589 TAAGGTTGCCAGCACCGGAG 62.464 60.000 9.46 0.00 0.00 4.63
3806 4149 7.552458 AAAATATCATGACGTCTACATTGCA 57.448 32.000 17.92 0.00 0.00 4.08
3807 4150 7.552458 AAATATCATGACGTCTACATTGCAA 57.448 32.000 17.92 0.00 0.00 4.08
3808 4151 4.864916 ATCATGACGTCTACATTGCAAC 57.135 40.909 17.92 0.00 0.00 4.17
3809 4152 3.000041 TCATGACGTCTACATTGCAACC 59.000 45.455 17.92 0.00 0.00 3.77
3810 4153 1.803334 TGACGTCTACATTGCAACCC 58.197 50.000 17.92 0.00 0.00 4.11
3811 4154 1.346395 TGACGTCTACATTGCAACCCT 59.654 47.619 17.92 0.00 0.00 4.34
3812 4155 2.563620 TGACGTCTACATTGCAACCCTA 59.436 45.455 17.92 0.00 0.00 3.53
3813 4156 3.007074 TGACGTCTACATTGCAACCCTAA 59.993 43.478 17.92 0.00 0.00 2.69
3814 4157 3.998341 GACGTCTACATTGCAACCCTAAA 59.002 43.478 8.70 0.00 0.00 1.85
3815 4158 3.749609 ACGTCTACATTGCAACCCTAAAC 59.250 43.478 0.00 0.00 0.00 2.01
3816 4159 4.000988 CGTCTACATTGCAACCCTAAACT 58.999 43.478 0.00 0.00 0.00 2.66
3817 4160 5.172934 CGTCTACATTGCAACCCTAAACTA 58.827 41.667 0.00 0.00 0.00 2.24
3818 4161 5.640357 CGTCTACATTGCAACCCTAAACTAA 59.360 40.000 0.00 0.00 0.00 2.24
3819 4162 6.401796 CGTCTACATTGCAACCCTAAACTAAC 60.402 42.308 0.00 0.00 0.00 2.34
3820 4163 5.941647 TCTACATTGCAACCCTAAACTAACC 59.058 40.000 0.00 0.00 0.00 2.85
3821 4164 4.475345 ACATTGCAACCCTAAACTAACCA 58.525 39.130 0.00 0.00 0.00 3.67
3822 4165 4.279922 ACATTGCAACCCTAAACTAACCAC 59.720 41.667 0.00 0.00 0.00 4.16
3823 4166 3.579534 TGCAACCCTAAACTAACCACA 57.420 42.857 0.00 0.00 0.00 4.17
3824 4167 3.899726 TGCAACCCTAAACTAACCACAA 58.100 40.909 0.00 0.00 0.00 3.33
3825 4168 3.886505 TGCAACCCTAAACTAACCACAAG 59.113 43.478 0.00 0.00 0.00 3.16
3826 4169 4.139038 GCAACCCTAAACTAACCACAAGA 58.861 43.478 0.00 0.00 0.00 3.02
3827 4170 4.765339 GCAACCCTAAACTAACCACAAGAT 59.235 41.667 0.00 0.00 0.00 2.40
3828 4171 5.243060 GCAACCCTAAACTAACCACAAGATT 59.757 40.000 0.00 0.00 0.00 2.40
3829 4172 6.239204 GCAACCCTAAACTAACCACAAGATTT 60.239 38.462 0.00 0.00 0.00 2.17
3830 4173 7.040271 GCAACCCTAAACTAACCACAAGATTTA 60.040 37.037 0.00 0.00 0.00 1.40
3831 4174 8.852135 CAACCCTAAACTAACCACAAGATTTAA 58.148 33.333 0.00 0.00 0.00 1.52
3832 4175 8.631480 ACCCTAAACTAACCACAAGATTTAAG 57.369 34.615 0.00 0.00 0.00 1.85
3833 4176 8.442374 ACCCTAAACTAACCACAAGATTTAAGA 58.558 33.333 0.00 0.00 0.00 2.10
3834 4177 9.462606 CCCTAAACTAACCACAAGATTTAAGAT 57.537 33.333 0.00 0.00 0.00 2.40
3840 4183 8.793592 ACTAACCACAAGATTTAAGATTCAACC 58.206 33.333 0.00 0.00 0.00 3.77
3841 4184 6.590234 ACCACAAGATTTAAGATTCAACCC 57.410 37.500 0.00 0.00 0.00 4.11
3842 4185 6.314917 ACCACAAGATTTAAGATTCAACCCT 58.685 36.000 0.00 0.00 0.00 4.34
3843 4186 6.434340 ACCACAAGATTTAAGATTCAACCCTC 59.566 38.462 0.00 0.00 0.00 4.30
3844 4187 6.434028 CCACAAGATTTAAGATTCAACCCTCA 59.566 38.462 0.00 0.00 0.00 3.86
3845 4188 7.039784 CCACAAGATTTAAGATTCAACCCTCAA 60.040 37.037 0.00 0.00 0.00 3.02
3846 4189 7.809806 CACAAGATTTAAGATTCAACCCTCAAC 59.190 37.037 0.00 0.00 0.00 3.18
3847 4190 7.725844 ACAAGATTTAAGATTCAACCCTCAACT 59.274 33.333 0.00 0.00 0.00 3.16
3848 4191 9.231297 CAAGATTTAAGATTCAACCCTCAACTA 57.769 33.333 0.00 0.00 0.00 2.24
3849 4192 9.981460 AAGATTTAAGATTCAACCCTCAACTAT 57.019 29.630 0.00 0.00 0.00 2.12
3856 4199 8.040716 AGATTCAACCCTCAACTATAAAAACG 57.959 34.615 0.00 0.00 0.00 3.60
3857 4200 6.563222 TTCAACCCTCAACTATAAAAACGG 57.437 37.500 0.00 0.00 0.00 4.44
3858 4201 4.456566 TCAACCCTCAACTATAAAAACGGC 59.543 41.667 0.00 0.00 0.00 5.68
3859 4202 3.349927 ACCCTCAACTATAAAAACGGCC 58.650 45.455 0.00 0.00 0.00 6.13
3860 4203 3.244981 ACCCTCAACTATAAAAACGGCCA 60.245 43.478 2.24 0.00 0.00 5.36
3861 4204 3.951680 CCCTCAACTATAAAAACGGCCAT 59.048 43.478 2.24 0.00 0.00 4.40
3862 4205 4.401202 CCCTCAACTATAAAAACGGCCATT 59.599 41.667 2.24 0.00 0.00 3.16
3863 4206 5.449999 CCCTCAACTATAAAAACGGCCATTC 60.450 44.000 2.24 0.00 0.00 2.67
3864 4207 5.357032 CCTCAACTATAAAAACGGCCATTCT 59.643 40.000 2.24 0.00 0.00 2.40
3865 4208 6.540914 CCTCAACTATAAAAACGGCCATTCTA 59.459 38.462 2.24 0.00 0.00 2.10
3866 4209 7.311364 TCAACTATAAAAACGGCCATTCTAC 57.689 36.000 2.24 0.00 0.00 2.59
3867 4210 6.879993 TCAACTATAAAAACGGCCATTCTACA 59.120 34.615 2.24 0.00 0.00 2.74
3868 4211 6.673154 ACTATAAAAACGGCCATTCTACAC 57.327 37.500 2.24 0.00 0.00 2.90
3869 4212 4.976224 ATAAAAACGGCCATTCTACACC 57.024 40.909 2.24 0.00 0.00 4.16
3870 4213 2.279935 AAAACGGCCATTCTACACCA 57.720 45.000 2.24 0.00 0.00 4.17
3871 4214 2.507407 AAACGGCCATTCTACACCAT 57.493 45.000 2.24 0.00 0.00 3.55
3872 4215 1.750193 AACGGCCATTCTACACCATG 58.250 50.000 2.24 0.00 0.00 3.66
3873 4216 0.908910 ACGGCCATTCTACACCATGA 59.091 50.000 2.24 0.00 0.00 3.07
3874 4217 1.280710 ACGGCCATTCTACACCATGAA 59.719 47.619 2.24 0.00 0.00 2.57
3875 4218 1.670811 CGGCCATTCTACACCATGAAC 59.329 52.381 2.24 0.00 0.00 3.18
3876 4219 2.680805 CGGCCATTCTACACCATGAACT 60.681 50.000 2.24 0.00 0.00 3.01
3877 4220 3.431626 CGGCCATTCTACACCATGAACTA 60.432 47.826 2.24 0.00 0.00 2.24
3878 4221 4.523083 GGCCATTCTACACCATGAACTAA 58.477 43.478 0.00 0.00 0.00 2.24
3879 4222 4.335594 GGCCATTCTACACCATGAACTAAC 59.664 45.833 0.00 0.00 0.00 2.34
3880 4223 4.335594 GCCATTCTACACCATGAACTAACC 59.664 45.833 0.00 0.00 0.00 2.85
3881 4224 5.496556 CCATTCTACACCATGAACTAACCA 58.503 41.667 0.00 0.00 0.00 3.67
3882 4225 5.354234 CCATTCTACACCATGAACTAACCAC 59.646 44.000 0.00 0.00 0.00 4.16
3883 4226 4.546829 TCTACACCATGAACTAACCACC 57.453 45.455 0.00 0.00 0.00 4.61
3884 4227 4.164981 TCTACACCATGAACTAACCACCT 58.835 43.478 0.00 0.00 0.00 4.00
3885 4228 5.335261 TCTACACCATGAACTAACCACCTA 58.665 41.667 0.00 0.00 0.00 3.08
3886 4229 4.553330 ACACCATGAACTAACCACCTAG 57.447 45.455 0.00 0.00 0.00 3.02
3887 4230 3.908103 ACACCATGAACTAACCACCTAGT 59.092 43.478 0.00 0.00 33.41 2.57
3888 4231 4.349930 ACACCATGAACTAACCACCTAGTT 59.650 41.667 0.00 0.00 43.31 2.24
3892 4235 3.242549 GAACTAACCACCTAGTTCGGG 57.757 52.381 7.53 0.00 44.67 5.14
3893 4236 2.610438 ACTAACCACCTAGTTCGGGA 57.390 50.000 0.00 0.00 0.00 5.14
3894 4237 2.893424 ACTAACCACCTAGTTCGGGAA 58.107 47.619 0.00 0.00 0.00 3.97
3895 4238 3.447950 ACTAACCACCTAGTTCGGGAAT 58.552 45.455 0.00 0.00 0.00 3.01
3896 4239 3.450096 ACTAACCACCTAGTTCGGGAATC 59.550 47.826 0.00 0.00 0.00 2.52
3897 4240 1.946984 ACCACCTAGTTCGGGAATCA 58.053 50.000 0.00 0.00 0.00 2.57
3898 4241 2.262637 ACCACCTAGTTCGGGAATCAA 58.737 47.619 0.00 0.00 0.00 2.57
3899 4242 2.027469 ACCACCTAGTTCGGGAATCAAC 60.027 50.000 0.00 0.00 0.00 3.18
3900 4243 2.629051 CACCTAGTTCGGGAATCAACC 58.371 52.381 0.00 0.00 0.00 3.77
3901 4244 1.558294 ACCTAGTTCGGGAATCAACCC 59.442 52.381 0.00 0.00 45.92 4.11
3908 4251 3.403936 GGGAATCAACCCTCCATCG 57.596 57.895 0.00 0.00 45.90 3.84
3909 4252 0.179018 GGGAATCAACCCTCCATCGG 60.179 60.000 0.00 0.00 45.90 4.18
3917 4260 3.903208 CCCTCCATCGGGTTTTGAT 57.097 52.632 0.00 0.00 39.51 2.57
3918 4261 2.143876 CCCTCCATCGGGTTTTGATT 57.856 50.000 0.00 0.00 39.51 2.57
3919 4262 2.024414 CCCTCCATCGGGTTTTGATTC 58.976 52.381 0.00 0.00 39.51 2.52
3920 4263 2.620367 CCCTCCATCGGGTTTTGATTCA 60.620 50.000 0.00 0.00 39.51 2.57
3921 4264 3.290710 CCTCCATCGGGTTTTGATTCAT 58.709 45.455 0.00 0.00 34.93 2.57
3922 4265 3.701040 CCTCCATCGGGTTTTGATTCATT 59.299 43.478 0.00 0.00 34.93 2.57
3923 4266 4.160252 CCTCCATCGGGTTTTGATTCATTT 59.840 41.667 0.00 0.00 34.93 2.32
3924 4267 5.070770 TCCATCGGGTTTTGATTCATTTG 57.929 39.130 0.00 0.00 34.93 2.32
3925 4268 4.769488 TCCATCGGGTTTTGATTCATTTGA 59.231 37.500 0.00 0.00 34.93 2.69
3926 4269 5.104374 CCATCGGGTTTTGATTCATTTGAG 58.896 41.667 0.00 0.00 0.00 3.02
3927 4270 4.173036 TCGGGTTTTGATTCATTTGAGC 57.827 40.909 0.00 0.00 0.00 4.26
3928 4271 2.916716 CGGGTTTTGATTCATTTGAGCG 59.083 45.455 0.00 0.00 0.00 5.03
3929 4272 3.365868 CGGGTTTTGATTCATTTGAGCGA 60.366 43.478 0.00 0.00 0.00 4.93
3930 4273 4.675146 CGGGTTTTGATTCATTTGAGCGAT 60.675 41.667 0.00 0.00 0.00 4.58
3931 4274 5.448496 CGGGTTTTGATTCATTTGAGCGATA 60.448 40.000 0.00 0.00 0.00 2.92
3932 4275 6.507023 GGGTTTTGATTCATTTGAGCGATAT 58.493 36.000 0.00 0.00 0.00 1.63
3933 4276 6.980397 GGGTTTTGATTCATTTGAGCGATATT 59.020 34.615 0.00 0.00 0.00 1.28
3934 4277 7.043192 GGGTTTTGATTCATTTGAGCGATATTG 60.043 37.037 0.00 0.00 0.00 1.90
3935 4278 7.701924 GGTTTTGATTCATTTGAGCGATATTGA 59.298 33.333 0.00 0.00 0.00 2.57
3936 4279 8.526681 GTTTTGATTCATTTGAGCGATATTGAC 58.473 33.333 0.00 0.00 0.00 3.18
3937 4280 6.304356 TGATTCATTTGAGCGATATTGACC 57.696 37.500 0.00 0.00 0.00 4.02
3938 4281 4.794248 TTCATTTGAGCGATATTGACCG 57.206 40.909 0.00 0.00 0.00 4.79
3945 4288 2.584166 GCGATATTGACCGCTGATTG 57.416 50.000 0.00 0.00 46.96 2.67
3946 4289 1.195448 GCGATATTGACCGCTGATTGG 59.805 52.381 0.00 0.00 46.96 3.16
3947 4290 1.195448 CGATATTGACCGCTGATTGGC 59.805 52.381 0.00 0.00 0.00 4.52
3948 4291 1.537202 GATATTGACCGCTGATTGGCC 59.463 52.381 0.00 0.00 0.00 5.36
3949 4292 0.254462 TATTGACCGCTGATTGGCCA 59.746 50.000 0.00 0.00 0.00 5.36
3950 4293 0.396139 ATTGACCGCTGATTGGCCAT 60.396 50.000 6.09 0.00 0.00 4.40
3951 4294 0.611618 TTGACCGCTGATTGGCCATT 60.612 50.000 6.09 1.72 0.00 3.16
3952 4295 1.314534 TGACCGCTGATTGGCCATTG 61.315 55.000 6.09 0.00 0.00 2.82
3953 4296 1.001020 ACCGCTGATTGGCCATTGA 60.001 52.632 6.09 0.00 0.00 2.57
3954 4297 1.315257 ACCGCTGATTGGCCATTGAC 61.315 55.000 6.09 0.00 0.00 3.18
3955 4298 1.314534 CCGCTGATTGGCCATTGACA 61.315 55.000 6.09 3.81 0.00 3.58
3956 4299 0.742505 CGCTGATTGGCCATTGACAT 59.257 50.000 6.09 0.00 0.00 3.06
3957 4300 1.535226 CGCTGATTGGCCATTGACATG 60.535 52.381 6.09 0.00 0.00 3.21
3958 4301 1.479323 GCTGATTGGCCATTGACATGT 59.521 47.619 6.09 0.00 0.00 3.21
3959 4302 2.480759 GCTGATTGGCCATTGACATGTC 60.481 50.000 19.27 19.27 0.00 3.06
3960 4303 2.756207 CTGATTGGCCATTGACATGTCA 59.244 45.455 24.56 24.56 37.91 3.58
3961 4304 2.492881 TGATTGGCCATTGACATGTCAC 59.507 45.455 27.88 15.97 39.66 3.67
3962 4305 1.255882 TTGGCCATTGACATGTCACC 58.744 50.000 27.88 23.84 39.66 4.02
3963 4306 0.405198 TGGCCATTGACATGTCACCT 59.595 50.000 27.88 15.41 39.66 4.00
3964 4307 1.203038 TGGCCATTGACATGTCACCTT 60.203 47.619 27.88 13.06 39.66 3.50
3965 4308 1.895131 GGCCATTGACATGTCACCTTT 59.105 47.619 27.88 10.58 39.66 3.11
3966 4309 2.299867 GGCCATTGACATGTCACCTTTT 59.700 45.455 27.88 8.15 39.66 2.27
3967 4310 3.319755 GCCATTGACATGTCACCTTTTG 58.680 45.455 27.88 18.09 39.66 2.44
3968 4311 3.005684 GCCATTGACATGTCACCTTTTGA 59.994 43.478 27.88 12.17 39.66 2.69
3976 4319 2.160646 TCACCTTTTGACCCCCTCC 58.839 57.895 0.00 0.00 0.00 4.30
3977 4320 0.402861 TCACCTTTTGACCCCCTCCT 60.403 55.000 0.00 0.00 0.00 3.69
3978 4321 0.482887 CACCTTTTGACCCCCTCCTT 59.517 55.000 0.00 0.00 0.00 3.36
3979 4322 1.708551 CACCTTTTGACCCCCTCCTTA 59.291 52.381 0.00 0.00 0.00 2.69
3980 4323 1.709115 ACCTTTTGACCCCCTCCTTAC 59.291 52.381 0.00 0.00 0.00 2.34
3981 4324 1.708551 CCTTTTGACCCCCTCCTTACA 59.291 52.381 0.00 0.00 0.00 2.41
3982 4325 2.311841 CCTTTTGACCCCCTCCTTACAT 59.688 50.000 0.00 0.00 0.00 2.29
3983 4326 3.356290 CTTTTGACCCCCTCCTTACATG 58.644 50.000 0.00 0.00 0.00 3.21
3984 4327 2.053747 TTGACCCCCTCCTTACATGT 57.946 50.000 2.69 2.69 0.00 3.21
3985 4328 1.285280 TGACCCCCTCCTTACATGTG 58.715 55.000 9.11 0.00 0.00 3.21
3986 4329 0.546598 GACCCCCTCCTTACATGTGG 59.453 60.000 9.11 1.63 0.00 4.17
3987 4330 0.919289 ACCCCCTCCTTACATGTGGG 60.919 60.000 9.11 11.11 37.68 4.61
3988 4331 0.623324 CCCCCTCCTTACATGTGGGA 60.623 60.000 17.71 17.61 40.23 4.37
3989 4332 0.546598 CCCCTCCTTACATGTGGGAC 59.453 60.000 17.71 0.00 40.23 4.46
3990 4333 0.546598 CCCTCCTTACATGTGGGACC 59.453 60.000 11.93 0.00 40.23 4.46
3991 4334 0.546598 CCTCCTTACATGTGGGACCC 59.453 60.000 9.11 2.45 0.00 4.46
3992 4335 1.285280 CTCCTTACATGTGGGACCCA 58.715 55.000 9.95 9.95 0.00 4.51
4049 4392 9.935682 CAATTCTCTATCTTATATCTCTCTCGC 57.064 37.037 0.00 0.00 0.00 5.03
4050 4393 9.905713 AATTCTCTATCTTATATCTCTCTCGCT 57.094 33.333 0.00 0.00 0.00 4.93
4051 4394 8.716646 TTCTCTATCTTATATCTCTCTCGCTG 57.283 38.462 0.00 0.00 0.00 5.18
4052 4395 6.761242 TCTCTATCTTATATCTCTCTCGCTGC 59.239 42.308 0.00 0.00 0.00 5.25
4053 4396 6.410540 TCTATCTTATATCTCTCTCGCTGCA 58.589 40.000 0.00 0.00 0.00 4.41
4054 4397 7.053498 TCTATCTTATATCTCTCTCGCTGCAT 58.947 38.462 0.00 0.00 0.00 3.96
4055 4398 5.973899 TCTTATATCTCTCTCGCTGCATT 57.026 39.130 0.00 0.00 0.00 3.56
4056 4399 5.707931 TCTTATATCTCTCTCGCTGCATTG 58.292 41.667 0.00 0.00 0.00 2.82
4057 4400 5.474876 TCTTATATCTCTCTCGCTGCATTGA 59.525 40.000 0.00 0.00 0.00 2.57
4058 4401 4.804868 ATATCTCTCTCGCTGCATTGAT 57.195 40.909 0.00 0.00 0.00 2.57
4059 4402 2.975732 TCTCTCTCGCTGCATTGATT 57.024 45.000 0.00 0.00 0.00 2.57
4060 4403 2.547826 TCTCTCTCGCTGCATTGATTG 58.452 47.619 0.00 0.00 0.00 2.67
4073 4416 3.454375 CATTGATTGCTGCTCAATTCCC 58.546 45.455 12.74 0.00 44.95 3.97
4074 4417 1.477553 TGATTGCTGCTCAATTCCCC 58.522 50.000 0.00 0.00 44.95 4.81
4075 4418 0.749049 GATTGCTGCTCAATTCCCCC 59.251 55.000 0.00 0.00 44.95 5.40
4076 4419 0.041535 ATTGCTGCTCAATTCCCCCA 59.958 50.000 0.00 0.00 42.48 4.96
4077 4420 0.899717 TTGCTGCTCAATTCCCCCAC 60.900 55.000 0.00 0.00 0.00 4.61
4078 4421 2.054453 GCTGCTCAATTCCCCCACC 61.054 63.158 0.00 0.00 0.00 4.61
4079 4422 1.750399 CTGCTCAATTCCCCCACCG 60.750 63.158 0.00 0.00 0.00 4.94
4080 4423 3.140814 GCTCAATTCCCCCACCGC 61.141 66.667 0.00 0.00 0.00 5.68
4081 4424 2.440247 CTCAATTCCCCCACCGCC 60.440 66.667 0.00 0.00 0.00 6.13
4082 4425 4.418328 TCAATTCCCCCACCGCCG 62.418 66.667 0.00 0.00 0.00 6.46
4100 4443 4.899239 CACTCCTCGCCATCGCCC 62.899 72.222 0.00 0.00 35.26 6.13
4102 4445 4.598894 CTCCTCGCCATCGCCCAG 62.599 72.222 0.00 0.00 35.26 4.45
4109 4452 4.113815 CCATCGCCCAGCCTCCAA 62.114 66.667 0.00 0.00 0.00 3.53
4110 4453 2.194056 CATCGCCCAGCCTCCAAT 59.806 61.111 0.00 0.00 0.00 3.16
4111 4454 1.895707 CATCGCCCAGCCTCCAATC 60.896 63.158 0.00 0.00 0.00 2.67
4112 4455 2.074948 ATCGCCCAGCCTCCAATCT 61.075 57.895 0.00 0.00 0.00 2.40
4113 4456 1.639635 ATCGCCCAGCCTCCAATCTT 61.640 55.000 0.00 0.00 0.00 2.40
4114 4457 1.821332 CGCCCAGCCTCCAATCTTC 60.821 63.158 0.00 0.00 0.00 2.87
4115 4458 1.611965 GCCCAGCCTCCAATCTTCT 59.388 57.895 0.00 0.00 0.00 2.85
4116 4459 0.033699 GCCCAGCCTCCAATCTTCTT 60.034 55.000 0.00 0.00 0.00 2.52
4117 4460 2.021208 GCCCAGCCTCCAATCTTCTTC 61.021 57.143 0.00 0.00 0.00 2.87
4118 4461 1.409381 CCCAGCCTCCAATCTTCTTCC 60.409 57.143 0.00 0.00 0.00 3.46
4119 4462 1.563410 CCAGCCTCCAATCTTCTTCCT 59.437 52.381 0.00 0.00 0.00 3.36
4120 4463 2.025510 CCAGCCTCCAATCTTCTTCCTT 60.026 50.000 0.00 0.00 0.00 3.36
4121 4464 3.277715 CAGCCTCCAATCTTCTTCCTTC 58.722 50.000 0.00 0.00 0.00 3.46
4122 4465 3.054508 CAGCCTCCAATCTTCTTCCTTCT 60.055 47.826 0.00 0.00 0.00 2.85
4123 4466 3.199727 AGCCTCCAATCTTCTTCCTTCTC 59.800 47.826 0.00 0.00 0.00 2.87
4124 4467 3.791245 CCTCCAATCTTCTTCCTTCTCG 58.209 50.000 0.00 0.00 0.00 4.04
4125 4468 3.196685 CCTCCAATCTTCTTCCTTCTCGT 59.803 47.826 0.00 0.00 0.00 4.18
4126 4469 4.429108 CTCCAATCTTCTTCCTTCTCGTC 58.571 47.826 0.00 0.00 0.00 4.20
4127 4470 3.195825 TCCAATCTTCTTCCTTCTCGTCC 59.804 47.826 0.00 0.00 0.00 4.79
4128 4471 3.055819 CCAATCTTCTTCCTTCTCGTCCA 60.056 47.826 0.00 0.00 0.00 4.02
4129 4472 4.563580 CCAATCTTCTTCCTTCTCGTCCAA 60.564 45.833 0.00 0.00 0.00 3.53
4130 4473 3.662247 TCTTCTTCCTTCTCGTCCAAC 57.338 47.619 0.00 0.00 0.00 3.77
4131 4474 2.299297 TCTTCTTCCTTCTCGTCCAACC 59.701 50.000 0.00 0.00 0.00 3.77
4132 4475 0.601558 TCTTCCTTCTCGTCCAACCG 59.398 55.000 0.00 0.00 0.00 4.44
4133 4476 1.005394 TTCCTTCTCGTCCAACCGC 60.005 57.895 0.00 0.00 0.00 5.68
4134 4477 2.434359 CCTTCTCGTCCAACCGCC 60.434 66.667 0.00 0.00 0.00 6.13
4135 4478 2.434359 CTTCTCGTCCAACCGCCC 60.434 66.667 0.00 0.00 0.00 6.13
4136 4479 4.367023 TTCTCGTCCAACCGCCCG 62.367 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 152 9.414295 CAATCTTCATAGCTGAAAAACATTTCA 57.586 29.630 0.00 4.17 40.78 2.69
512 528 2.040813 ACTTCATCCAACAGAGCCATGT 59.959 45.455 0.00 0.00 33.96 3.21
583 614 7.460402 ACAATCAATATGGATCTGAGGGAGTAT 59.540 37.037 0.00 0.00 0.00 2.12
635 666 5.122519 TGTTGTACACAAATGCTCTCTTCA 58.877 37.500 0.00 0.00 37.63 3.02
661 692 6.721318 TCAAGAAGGCTTATAAACCTCACAT 58.279 36.000 7.88 0.00 34.31 3.21
711 742 4.643334 GGCGGACCCAGACTAAAAATTAAT 59.357 41.667 0.00 0.00 0.00 1.40
713 744 3.613030 GGCGGACCCAGACTAAAAATTA 58.387 45.455 0.00 0.00 0.00 1.40
715 746 2.124277 GGCGGACCCAGACTAAAAAT 57.876 50.000 0.00 0.00 0.00 1.82
742 773 3.320626 CCTCACATGCCATGTAGTATCG 58.679 50.000 10.53 0.00 42.70 2.92
743 774 3.070018 GCCTCACATGCCATGTAGTATC 58.930 50.000 10.53 0.00 42.70 2.24
744 775 2.439135 TGCCTCACATGCCATGTAGTAT 59.561 45.455 10.53 0.00 42.70 2.12
745 776 1.836802 TGCCTCACATGCCATGTAGTA 59.163 47.619 10.53 0.00 42.70 1.82
746 777 0.620030 TGCCTCACATGCCATGTAGT 59.380 50.000 10.53 0.00 42.70 2.73
747 778 1.878088 GATGCCTCACATGCCATGTAG 59.122 52.381 10.53 8.38 42.70 2.74
748 779 1.212441 TGATGCCTCACATGCCATGTA 59.788 47.619 10.53 0.00 42.70 2.29
749 780 0.033894 TGATGCCTCACATGCCATGT 60.034 50.000 4.03 4.03 46.22 3.21
750 781 2.801859 TGATGCCTCACATGCCATG 58.198 52.632 2.40 2.40 39.84 3.66
762 793 1.453928 GTAGCCCCAAGGTGATGCC 60.454 63.158 0.00 0.00 34.57 4.40
763 794 1.819632 CGTAGCCCCAAGGTGATGC 60.820 63.158 0.00 0.00 34.57 3.91
764 795 4.540153 CGTAGCCCCAAGGTGATG 57.460 61.111 0.00 0.00 34.57 3.07
790 821 3.110447 TGAATTTGAACTTGCAAGGGC 57.890 42.857 29.18 20.14 41.68 5.19
791 822 5.220835 GGTTTTGAATTTGAACTTGCAAGGG 60.221 40.000 29.18 7.81 0.00 3.95
792 823 5.353678 TGGTTTTGAATTTGAACTTGCAAGG 59.646 36.000 29.18 12.28 0.00 3.61
810 841 4.893524 CAGGTTTAAACTCTCCCTGGTTTT 59.106 41.667 17.50 0.00 39.20 2.43
814 845 3.790089 ACAGGTTTAAACTCTCCCTGG 57.210 47.619 20.12 7.69 45.57 4.45
817 848 6.210185 TGTCTAGTACAGGTTTAAACTCTCCC 59.790 42.308 17.50 1.07 33.01 4.30
818 849 7.224522 TGTCTAGTACAGGTTTAAACTCTCC 57.775 40.000 17.50 1.44 33.01 3.71
831 862 4.505556 TCGTACGCTACATGTCTAGTACAG 59.494 45.833 24.43 19.44 42.70 2.74
834 865 4.936891 TCTCGTACGCTACATGTCTAGTA 58.063 43.478 11.24 2.24 0.00 1.82
835 866 3.790091 TCTCGTACGCTACATGTCTAGT 58.210 45.455 11.24 3.30 0.00 2.57
836 867 4.994220 ATCTCGTACGCTACATGTCTAG 57.006 45.455 11.24 0.00 0.00 2.43
868 899 4.096382 GTCTGTCTGACAAAGGCAAAAGAA 59.904 41.667 12.16 0.00 40.90 2.52
937 969 1.069668 GTTTGGGTACTGTGGACGACT 59.930 52.381 0.00 0.00 0.00 4.18
938 970 1.202557 TGTTTGGGTACTGTGGACGAC 60.203 52.381 0.00 0.00 0.00 4.34
939 971 1.121378 TGTTTGGGTACTGTGGACGA 58.879 50.000 0.00 0.00 0.00 4.20
972 1004 1.920325 TCCTGGAGCTTGGTGGGAG 60.920 63.158 0.00 0.00 0.00 4.30
973 1005 2.206900 TCCTGGAGCTTGGTGGGA 59.793 61.111 0.00 0.00 0.00 4.37
974 1006 2.352805 GTCCTGGAGCTTGGTGGG 59.647 66.667 0.00 0.00 0.00 4.61
975 1007 1.302832 GTGTCCTGGAGCTTGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
976 1008 1.302832 GGTGTCCTGGAGCTTGGTG 60.303 63.158 0.00 0.00 0.00 4.17
1036 1068 3.703127 GAGGGAACGGCGGAGGTT 61.703 66.667 13.24 0.00 0.00 3.50
1766 1868 4.836125 AAATGTTGTTGGCTGTCTGTAG 57.164 40.909 0.00 0.00 0.00 2.74
1777 1882 2.806382 GCCTGTCCCCAAAATGTTGTTG 60.806 50.000 0.00 0.00 32.40 3.33
1779 1884 1.047801 GCCTGTCCCCAAAATGTTGT 58.952 50.000 0.00 0.00 32.40 3.32
1801 1906 1.260538 TTCTGGTCATCGGCAGCTCT 61.261 55.000 0.00 0.00 0.00 4.09
2099 2246 0.740737 CCCAATCACCTTTCCATCGC 59.259 55.000 0.00 0.00 0.00 4.58
2101 2248 1.114627 GCCCCAATCACCTTTCCATC 58.885 55.000 0.00 0.00 0.00 3.51
2106 2253 1.342374 GGAGATGCCCCAATCACCTTT 60.342 52.381 0.00 0.00 35.22 3.11
2143 2290 3.133691 GCACACATGACACAAGAGAGAA 58.866 45.455 0.00 0.00 0.00 2.87
2212 2377 7.753309 AAACAAGCTGGTGTTACATACATTA 57.247 32.000 4.25 0.00 40.86 1.90
2213 2378 6.648879 AAACAAGCTGGTGTTACATACATT 57.351 33.333 4.25 0.00 40.86 2.71
2215 2380 7.663905 AGATTAAACAAGCTGGTGTTACATACA 59.336 33.333 4.25 0.00 40.86 2.29
2216 2381 8.040716 AGATTAAACAAGCTGGTGTTACATAC 57.959 34.615 4.25 0.00 40.86 2.39
2217 2382 9.899661 ATAGATTAAACAAGCTGGTGTTACATA 57.100 29.630 4.25 0.00 40.86 2.29
2218 2383 8.677300 CATAGATTAAACAAGCTGGTGTTACAT 58.323 33.333 4.25 0.55 40.86 2.29
2219 2384 7.663905 ACATAGATTAAACAAGCTGGTGTTACA 59.336 33.333 4.25 0.00 40.86 2.41
2220 2385 8.040716 ACATAGATTAAACAAGCTGGTGTTAC 57.959 34.615 4.25 0.00 40.86 2.50
2221 2386 9.727859 TTACATAGATTAAACAAGCTGGTGTTA 57.272 29.630 4.25 0.00 40.86 2.41
2222 2387 8.630054 TTACATAGATTAAACAAGCTGGTGTT 57.370 30.769 0.00 0.00 43.58 3.32
2244 2409 7.111593 CACGAGCAAATACAAACTGAAACTTAC 59.888 37.037 0.00 0.00 0.00 2.34
2279 2458 2.092968 TCTCTCCAAGCACACAACACTT 60.093 45.455 0.00 0.00 0.00 3.16
2421 2621 6.699575 AGTCTGTTGCAATCTAAAGTTTGT 57.300 33.333 0.59 0.00 0.00 2.83
2458 2660 4.406326 AGTCGGTCTCAGTAGATCAGTAGA 59.594 45.833 0.00 0.00 31.76 2.59
2549 2754 2.886523 CTGAAGGGAACATGAAGCACAA 59.113 45.455 0.00 0.00 0.00 3.33
2552 2757 1.538047 GCTGAAGGGAACATGAAGCA 58.462 50.000 0.00 0.00 0.00 3.91
2556 2761 1.956636 GCATGGCTGAAGGGAACATGA 60.957 52.381 0.00 0.00 40.92 3.07
2557 2762 0.458669 GCATGGCTGAAGGGAACATG 59.541 55.000 0.00 0.00 41.26 3.21
2558 2763 0.040058 TGCATGGCTGAAGGGAACAT 59.960 50.000 0.00 0.00 0.00 2.71
2559 2764 0.040058 ATGCATGGCTGAAGGGAACA 59.960 50.000 0.00 0.00 0.00 3.18
2560 2765 0.458669 CATGCATGGCTGAAGGGAAC 59.541 55.000 19.40 0.00 0.00 3.62
2562 2767 1.755395 GCATGCATGGCTGAAGGGA 60.755 57.895 27.34 0.00 0.00 4.20
2563 2768 1.735376 GAGCATGCATGGCTGAAGGG 61.735 60.000 27.34 0.00 42.78 3.95
2564 2769 1.734137 GAGCATGCATGGCTGAAGG 59.266 57.895 27.34 0.11 42.78 3.46
2565 2770 0.752009 AGGAGCATGCATGGCTGAAG 60.752 55.000 27.34 0.91 42.78 3.02
2566 2771 1.035385 CAGGAGCATGCATGGCTGAA 61.035 55.000 27.34 0.00 42.78 3.02
2567 2772 1.453197 CAGGAGCATGCATGGCTGA 60.453 57.895 27.34 0.00 42.78 4.26
2568 2773 1.320344 AACAGGAGCATGCATGGCTG 61.320 55.000 27.34 15.33 42.78 4.85
2569 2774 0.256752 TAACAGGAGCATGCATGGCT 59.743 50.000 27.34 22.90 46.07 4.75
2570 2775 1.325355 ATAACAGGAGCATGCATGGC 58.675 50.000 27.34 18.86 0.00 4.40
2571 2776 5.618418 CGATAAATAACAGGAGCATGCATGG 60.618 44.000 27.34 13.04 0.00 3.66
2572 2777 5.179929 TCGATAAATAACAGGAGCATGCATG 59.820 40.000 22.70 22.70 0.00 4.06
2573 2778 5.308014 TCGATAAATAACAGGAGCATGCAT 58.692 37.500 21.98 4.75 0.00 3.96
2574 2779 4.702831 TCGATAAATAACAGGAGCATGCA 58.297 39.130 21.98 0.00 0.00 3.96
2575 2780 5.673337 TTCGATAAATAACAGGAGCATGC 57.327 39.130 10.51 10.51 0.00 4.06
2576 2781 6.129393 CGTTTCGATAAATAACAGGAGCATG 58.871 40.000 0.00 0.00 0.00 4.06
2577 2782 5.815740 ACGTTTCGATAAATAACAGGAGCAT 59.184 36.000 0.00 0.00 0.00 3.79
2578 2783 5.062934 CACGTTTCGATAAATAACAGGAGCA 59.937 40.000 0.00 0.00 0.00 4.26
2579 2784 5.063060 ACACGTTTCGATAAATAACAGGAGC 59.937 40.000 0.00 0.00 0.00 4.70
2580 2785 6.505888 CGACACGTTTCGATAAATAACAGGAG 60.506 42.308 18.86 0.00 41.78 3.69
2581 2786 5.286797 CGACACGTTTCGATAAATAACAGGA 59.713 40.000 18.86 0.00 41.78 3.86
2582 2787 5.478001 CGACACGTTTCGATAAATAACAGG 58.522 41.667 18.86 0.00 41.78 4.00
2583 2788 5.286797 TCCGACACGTTTCGATAAATAACAG 59.713 40.000 24.63 4.69 41.78 3.16
2584 2789 5.159925 TCCGACACGTTTCGATAAATAACA 58.840 37.500 24.63 0.00 41.78 2.41
2585 2790 5.685195 TCCGACACGTTTCGATAAATAAC 57.315 39.130 24.63 0.00 41.78 1.89
2586 2791 6.890663 AATCCGACACGTTTCGATAAATAA 57.109 33.333 24.63 2.51 41.78 1.40
2598 2803 0.172803 GCTCACCTAATCCGACACGT 59.827 55.000 0.00 0.00 0.00 4.49
2605 2810 3.567478 ACCATTCTGCTCACCTAATCC 57.433 47.619 0.00 0.00 0.00 3.01
2619 2832 6.603201 TCAATCTTCAGGGAAATGTACCATTC 59.397 38.462 0.00 0.00 0.00 2.67
2730 3014 2.687935 TCAGAAACCAAACAGCTGAACC 59.312 45.455 23.35 0.37 33.11 3.62
2731 3015 4.370364 TTCAGAAACCAAACAGCTGAAC 57.630 40.909 23.35 2.27 39.77 3.18
2733 3017 5.126869 TCAAATTCAGAAACCAAACAGCTGA 59.873 36.000 23.35 0.00 34.11 4.26
2809 3113 5.306937 TGAGGTGAAGACAACATCCTTAAGA 59.693 40.000 3.36 0.00 35.97 2.10
2830 3134 2.028294 AGAGGTGCACAAGAGTCATGAG 60.028 50.000 20.43 0.00 0.00 2.90
3021 3343 8.453238 TGCTAACCTAGAACAATTTGTAACAA 57.547 30.769 1.76 0.00 0.00 2.83
3038 3365 6.384305 AGGACAGATACAACTTATGCTAACCT 59.616 38.462 0.00 0.00 0.00 3.50
3141 3474 4.763073 TCATTCACCACTTCTAGATGCAG 58.237 43.478 5.57 0.00 0.00 4.41
3173 3506 5.070446 CACCCAGAGATACATAAGCTGGTAA 59.930 44.000 0.00 0.00 43.52 2.85
3365 3706 6.398234 TTGCAAATAACAAGCCTCAGTTTA 57.602 33.333 0.00 0.00 0.00 2.01
3427 3768 7.716560 TCCATTTATACATCTCACATCCACAAG 59.283 37.037 0.00 0.00 0.00 3.16
3458 3799 2.020720 TGAATGAACACAAGTGCCGTT 58.979 42.857 0.00 0.75 0.00 4.44
3465 3806 6.651755 AACAAAAAGCTGAATGAACACAAG 57.348 33.333 0.00 0.00 0.00 3.16
3481 3822 9.007901 ACTCAACATGGAAAATGAAAACAAAAA 57.992 25.926 0.00 0.00 0.00 1.94
3556 3899 1.382522 ATAGCACAACCCTTGCATCG 58.617 50.000 0.00 0.00 42.83 3.84
3608 3951 6.068473 ACAAACAATAAACCCGAACTTCTC 57.932 37.500 0.00 0.00 0.00 2.87
3652 3995 8.150945 GTGAGCTTATTAGTGATAGATTTCCCA 58.849 37.037 0.00 0.00 0.00 4.37
3663 4006 6.816640 GTGTGGTTATGTGAGCTTATTAGTGA 59.183 38.462 0.00 0.00 0.00 3.41
3664 4007 6.818644 AGTGTGGTTATGTGAGCTTATTAGTG 59.181 38.462 0.00 0.00 0.00 2.74
3665 4008 6.947464 AGTGTGGTTATGTGAGCTTATTAGT 58.053 36.000 0.00 0.00 0.00 2.24
3666 4009 7.849804 AAGTGTGGTTATGTGAGCTTATTAG 57.150 36.000 0.00 0.00 0.00 1.73
3667 4010 8.537016 AGTAAGTGTGGTTATGTGAGCTTATTA 58.463 33.333 0.00 0.00 0.00 0.98
3668 4011 7.394816 AGTAAGTGTGGTTATGTGAGCTTATT 58.605 34.615 0.00 0.00 0.00 1.40
3669 4012 6.947464 AGTAAGTGTGGTTATGTGAGCTTAT 58.053 36.000 0.00 0.00 0.00 1.73
3670 4013 6.354794 AGTAAGTGTGGTTATGTGAGCTTA 57.645 37.500 0.00 0.00 0.00 3.09
3671 4014 5.228945 AGTAAGTGTGGTTATGTGAGCTT 57.771 39.130 0.00 0.00 0.00 3.74
3672 4015 4.891992 AGTAAGTGTGGTTATGTGAGCT 57.108 40.909 0.00 0.00 0.00 4.09
3673 4016 5.941948 AAAGTAAGTGTGGTTATGTGAGC 57.058 39.130 0.00 0.00 0.00 4.26
3694 4037 2.290387 TGGCTATGTGTCCCGCTAAAAA 60.290 45.455 0.00 0.00 0.00 1.94
3695 4038 1.279558 TGGCTATGTGTCCCGCTAAAA 59.720 47.619 0.00 0.00 0.00 1.52
3696 4039 0.906066 TGGCTATGTGTCCCGCTAAA 59.094 50.000 0.00 0.00 0.00 1.85
3697 4040 0.177141 GTGGCTATGTGTCCCGCTAA 59.823 55.000 0.00 0.00 0.00 3.09
3698 4041 0.973496 TGTGGCTATGTGTCCCGCTA 60.973 55.000 0.00 0.00 0.00 4.26
3699 4042 2.290287 TGTGGCTATGTGTCCCGCT 61.290 57.895 0.00 0.00 0.00 5.52
3700 4043 2.106683 GTGTGGCTATGTGTCCCGC 61.107 63.158 0.00 0.00 0.00 6.13
3701 4044 0.460284 GAGTGTGGCTATGTGTCCCG 60.460 60.000 0.00 0.00 0.00 5.14
3702 4045 0.613260 TGAGTGTGGCTATGTGTCCC 59.387 55.000 0.00 0.00 0.00 4.46
3703 4046 2.289694 ACTTGAGTGTGGCTATGTGTCC 60.290 50.000 0.00 0.00 0.00 4.02
3704 4047 3.045601 ACTTGAGTGTGGCTATGTGTC 57.954 47.619 0.00 0.00 0.00 3.67
3705 4048 3.492102 AACTTGAGTGTGGCTATGTGT 57.508 42.857 0.00 0.00 0.00 3.72
3706 4049 3.058016 CCAAACTTGAGTGTGGCTATGTG 60.058 47.826 7.40 0.00 45.59 3.21
3707 4050 3.149196 CCAAACTTGAGTGTGGCTATGT 58.851 45.455 7.40 0.00 45.59 2.29
3708 4051 3.837213 CCAAACTTGAGTGTGGCTATG 57.163 47.619 7.40 0.00 45.59 2.23
3714 4057 1.008538 GGCGCCAAACTTGAGTGTG 60.009 57.895 24.80 0.00 33.08 3.82
3715 4058 0.107831 TAGGCGCCAAACTTGAGTGT 59.892 50.000 31.54 5.27 0.00 3.55
3716 4059 1.453155 ATAGGCGCCAAACTTGAGTG 58.547 50.000 31.54 0.00 0.00 3.51
3717 4060 3.343941 TTATAGGCGCCAAACTTGAGT 57.656 42.857 31.54 6.76 0.00 3.41
3718 4061 3.181500 GGTTTATAGGCGCCAAACTTGAG 60.181 47.826 29.17 0.00 33.62 3.02
3719 4062 2.750712 GGTTTATAGGCGCCAAACTTGA 59.249 45.455 29.17 10.02 33.62 3.02
3720 4063 2.752903 AGGTTTATAGGCGCCAAACTTG 59.247 45.455 29.17 0.00 33.62 3.16
3721 4064 3.081710 AGGTTTATAGGCGCCAAACTT 57.918 42.857 29.17 23.37 33.62 2.66
3722 4065 2.801077 AGGTTTATAGGCGCCAAACT 57.199 45.000 29.17 20.95 33.62 2.66
3723 4066 3.314357 CCTTAGGTTTATAGGCGCCAAAC 59.686 47.826 31.54 27.65 0.00 2.93
3724 4067 3.054213 ACCTTAGGTTTATAGGCGCCAAA 60.054 43.478 31.54 18.06 27.29 3.28
3725 4068 2.506644 ACCTTAGGTTTATAGGCGCCAA 59.493 45.455 31.54 12.07 27.29 4.52
3726 4069 2.121129 ACCTTAGGTTTATAGGCGCCA 58.879 47.619 31.54 15.56 27.29 5.69
3727 4070 2.876550 CAACCTTAGGTTTATAGGCGCC 59.123 50.000 21.89 21.89 44.33 6.53
3728 4071 2.289820 GCAACCTTAGGTTTATAGGCGC 59.710 50.000 14.80 9.15 44.33 6.53
3729 4072 2.876550 GGCAACCTTAGGTTTATAGGCG 59.123 50.000 14.80 2.46 44.33 5.52
3730 4073 3.883489 CTGGCAACCTTAGGTTTATAGGC 59.117 47.826 14.80 15.25 44.33 3.93
3731 4074 3.883489 GCTGGCAACCTTAGGTTTATAGG 59.117 47.826 14.80 3.97 44.33 2.57
3732 4075 4.335594 GTGCTGGCAACCTTAGGTTTATAG 59.664 45.833 14.80 12.81 44.33 1.31
3733 4076 4.266714 GTGCTGGCAACCTTAGGTTTATA 58.733 43.478 14.80 2.57 44.33 0.98
3734 4077 3.089284 GTGCTGGCAACCTTAGGTTTAT 58.911 45.455 14.80 0.00 44.33 1.40
3735 4078 2.510613 GTGCTGGCAACCTTAGGTTTA 58.489 47.619 14.80 3.29 44.33 2.01
3736 4079 1.328279 GTGCTGGCAACCTTAGGTTT 58.672 50.000 14.80 0.00 44.33 3.27
3738 4081 1.074951 GGTGCTGGCAACCTTAGGT 59.925 57.895 0.00 0.00 37.65 3.08
3739 4082 2.040544 CGGTGCTGGCAACCTTAGG 61.041 63.158 4.97 0.00 0.00 2.69
3740 4083 2.040544 CCGGTGCTGGCAACCTTAG 61.041 63.158 4.97 0.00 0.00 2.18
3741 4084 2.033448 CCGGTGCTGGCAACCTTA 59.967 61.111 4.97 0.00 0.00 2.69
3742 4085 3.850098 CTCCGGTGCTGGCAACCTT 62.850 63.158 0.00 0.00 0.00 3.50
3743 4086 4.335647 CTCCGGTGCTGGCAACCT 62.336 66.667 0.00 0.00 0.00 3.50
3781 4124 7.984391 TGCAATGTAGACGTCATGATATTTTT 58.016 30.769 19.50 0.00 0.00 1.94
3782 4125 7.552458 TGCAATGTAGACGTCATGATATTTT 57.448 32.000 19.50 0.00 0.00 1.82
3783 4126 7.409697 GTTGCAATGTAGACGTCATGATATTT 58.590 34.615 19.50 0.00 0.00 1.40
3784 4127 6.017934 GGTTGCAATGTAGACGTCATGATATT 60.018 38.462 19.50 9.46 0.00 1.28
3785 4128 5.466728 GGTTGCAATGTAGACGTCATGATAT 59.533 40.000 19.50 3.53 0.00 1.63
3786 4129 4.808895 GGTTGCAATGTAGACGTCATGATA 59.191 41.667 19.50 1.02 0.00 2.15
3787 4130 3.623060 GGTTGCAATGTAGACGTCATGAT 59.377 43.478 19.50 2.77 0.00 2.45
3788 4131 3.000041 GGTTGCAATGTAGACGTCATGA 59.000 45.455 19.50 0.08 0.00 3.07
3789 4132 2.095853 GGGTTGCAATGTAGACGTCATG 59.904 50.000 19.50 9.33 0.00 3.07
3790 4133 2.027192 AGGGTTGCAATGTAGACGTCAT 60.027 45.455 19.50 5.54 0.00 3.06
3791 4134 1.346395 AGGGTTGCAATGTAGACGTCA 59.654 47.619 19.50 0.00 0.00 4.35
3792 4135 2.094762 AGGGTTGCAATGTAGACGTC 57.905 50.000 7.70 7.70 0.00 4.34
3793 4136 3.688694 TTAGGGTTGCAATGTAGACGT 57.311 42.857 0.59 0.00 0.00 4.34
3794 4137 4.000988 AGTTTAGGGTTGCAATGTAGACG 58.999 43.478 0.59 0.00 0.00 4.18
3795 4138 6.128090 GGTTAGTTTAGGGTTGCAATGTAGAC 60.128 42.308 0.59 0.63 0.00 2.59
3796 4139 5.941647 GGTTAGTTTAGGGTTGCAATGTAGA 59.058 40.000 0.59 0.00 0.00 2.59
3797 4140 5.708230 TGGTTAGTTTAGGGTTGCAATGTAG 59.292 40.000 0.59 0.00 0.00 2.74
3798 4141 5.474189 GTGGTTAGTTTAGGGTTGCAATGTA 59.526 40.000 0.59 0.00 0.00 2.29
3799 4142 4.279922 GTGGTTAGTTTAGGGTTGCAATGT 59.720 41.667 0.59 0.00 0.00 2.71
3800 4143 4.279671 TGTGGTTAGTTTAGGGTTGCAATG 59.720 41.667 0.59 0.00 0.00 2.82
3801 4144 4.475345 TGTGGTTAGTTTAGGGTTGCAAT 58.525 39.130 0.59 0.00 0.00 3.56
3802 4145 3.899726 TGTGGTTAGTTTAGGGTTGCAA 58.100 40.909 0.00 0.00 0.00 4.08
3803 4146 3.579534 TGTGGTTAGTTTAGGGTTGCA 57.420 42.857 0.00 0.00 0.00 4.08
3804 4147 4.139038 TCTTGTGGTTAGTTTAGGGTTGC 58.861 43.478 0.00 0.00 0.00 4.17
3805 4148 6.894339 AATCTTGTGGTTAGTTTAGGGTTG 57.106 37.500 0.00 0.00 0.00 3.77
3806 4149 8.999905 TTAAATCTTGTGGTTAGTTTAGGGTT 57.000 30.769 0.00 0.00 0.00 4.11
3807 4150 8.442374 TCTTAAATCTTGTGGTTAGTTTAGGGT 58.558 33.333 0.00 0.00 0.00 4.34
3808 4151 8.857694 TCTTAAATCTTGTGGTTAGTTTAGGG 57.142 34.615 0.00 0.00 0.00 3.53
3814 4157 8.793592 GGTTGAATCTTAAATCTTGTGGTTAGT 58.206 33.333 0.00 0.00 0.00 2.24
3815 4158 8.244113 GGGTTGAATCTTAAATCTTGTGGTTAG 58.756 37.037 0.00 0.00 0.00 2.34
3816 4159 7.947890 AGGGTTGAATCTTAAATCTTGTGGTTA 59.052 33.333 0.00 0.00 0.00 2.85
3817 4160 6.782494 AGGGTTGAATCTTAAATCTTGTGGTT 59.218 34.615 0.00 0.00 0.00 3.67
3818 4161 6.314917 AGGGTTGAATCTTAAATCTTGTGGT 58.685 36.000 0.00 0.00 0.00 4.16
3819 4162 6.434028 TGAGGGTTGAATCTTAAATCTTGTGG 59.566 38.462 0.00 0.00 0.00 4.17
3820 4163 7.452880 TGAGGGTTGAATCTTAAATCTTGTG 57.547 36.000 0.00 0.00 0.00 3.33
3821 4164 7.725844 AGTTGAGGGTTGAATCTTAAATCTTGT 59.274 33.333 0.00 0.00 0.00 3.16
3822 4165 8.115490 AGTTGAGGGTTGAATCTTAAATCTTG 57.885 34.615 0.00 0.00 0.00 3.02
3823 4166 9.981460 ATAGTTGAGGGTTGAATCTTAAATCTT 57.019 29.630 0.00 0.00 0.00 2.40
3830 4173 8.512138 CGTTTTTATAGTTGAGGGTTGAATCTT 58.488 33.333 0.00 0.00 0.00 2.40
3831 4174 7.120726 CCGTTTTTATAGTTGAGGGTTGAATCT 59.879 37.037 0.00 0.00 0.00 2.40
3832 4175 7.248437 CCGTTTTTATAGTTGAGGGTTGAATC 58.752 38.462 0.00 0.00 0.00 2.52
3833 4176 6.349860 GCCGTTTTTATAGTTGAGGGTTGAAT 60.350 38.462 0.00 0.00 0.00 2.57
3834 4177 5.048573 GCCGTTTTTATAGTTGAGGGTTGAA 60.049 40.000 0.00 0.00 0.00 2.69
3835 4178 4.456566 GCCGTTTTTATAGTTGAGGGTTGA 59.543 41.667 0.00 0.00 0.00 3.18
3836 4179 4.380128 GGCCGTTTTTATAGTTGAGGGTTG 60.380 45.833 0.00 0.00 0.00 3.77
3837 4180 3.760151 GGCCGTTTTTATAGTTGAGGGTT 59.240 43.478 0.00 0.00 0.00 4.11
3838 4181 3.244981 TGGCCGTTTTTATAGTTGAGGGT 60.245 43.478 0.00 0.00 0.00 4.34
3839 4182 3.349022 TGGCCGTTTTTATAGTTGAGGG 58.651 45.455 0.00 0.00 0.00 4.30
3840 4183 5.357032 AGAATGGCCGTTTTTATAGTTGAGG 59.643 40.000 12.53 0.00 0.00 3.86
3841 4184 6.436843 AGAATGGCCGTTTTTATAGTTGAG 57.563 37.500 12.53 0.00 0.00 3.02
3842 4185 6.879993 TGTAGAATGGCCGTTTTTATAGTTGA 59.120 34.615 12.53 0.00 0.00 3.18
3843 4186 6.964934 GTGTAGAATGGCCGTTTTTATAGTTG 59.035 38.462 12.53 0.00 0.00 3.16
3844 4187 6.094464 GGTGTAGAATGGCCGTTTTTATAGTT 59.906 38.462 12.53 0.00 0.00 2.24
3845 4188 5.587443 GGTGTAGAATGGCCGTTTTTATAGT 59.413 40.000 12.53 0.00 0.00 2.12
3846 4189 5.587043 TGGTGTAGAATGGCCGTTTTTATAG 59.413 40.000 12.53 0.00 0.00 1.31
3847 4190 5.498393 TGGTGTAGAATGGCCGTTTTTATA 58.502 37.500 12.53 3.80 0.00 0.98
3848 4191 4.337145 TGGTGTAGAATGGCCGTTTTTAT 58.663 39.130 12.53 1.43 0.00 1.40
3849 4192 3.752665 TGGTGTAGAATGGCCGTTTTTA 58.247 40.909 12.53 5.25 0.00 1.52
3850 4193 2.588620 TGGTGTAGAATGGCCGTTTTT 58.411 42.857 12.53 6.28 0.00 1.94
3851 4194 2.279935 TGGTGTAGAATGGCCGTTTT 57.720 45.000 12.53 9.01 0.00 2.43
3852 4195 2.091541 CATGGTGTAGAATGGCCGTTT 58.908 47.619 12.53 0.03 0.00 3.60
3853 4196 1.280710 TCATGGTGTAGAATGGCCGTT 59.719 47.619 10.83 10.83 0.00 4.44
3854 4197 0.908910 TCATGGTGTAGAATGGCCGT 59.091 50.000 0.00 0.00 0.00 5.68
3855 4198 1.670811 GTTCATGGTGTAGAATGGCCG 59.329 52.381 0.00 0.00 0.00 6.13
3856 4199 3.004752 AGTTCATGGTGTAGAATGGCC 57.995 47.619 0.00 0.00 0.00 5.36
3857 4200 4.335594 GGTTAGTTCATGGTGTAGAATGGC 59.664 45.833 0.00 0.00 0.00 4.40
3858 4201 5.354234 GTGGTTAGTTCATGGTGTAGAATGG 59.646 44.000 0.00 0.00 0.00 3.16
3859 4202 5.354234 GGTGGTTAGTTCATGGTGTAGAATG 59.646 44.000 0.00 0.00 0.00 2.67
3860 4203 5.250774 AGGTGGTTAGTTCATGGTGTAGAAT 59.749 40.000 0.00 0.00 0.00 2.40
3861 4204 4.595781 AGGTGGTTAGTTCATGGTGTAGAA 59.404 41.667 0.00 0.00 0.00 2.10
3862 4205 4.164981 AGGTGGTTAGTTCATGGTGTAGA 58.835 43.478 0.00 0.00 0.00 2.59
3863 4206 4.553330 AGGTGGTTAGTTCATGGTGTAG 57.447 45.455 0.00 0.00 0.00 2.74
3864 4207 5.088730 ACTAGGTGGTTAGTTCATGGTGTA 58.911 41.667 0.00 0.00 29.72 2.90
3865 4208 3.908103 ACTAGGTGGTTAGTTCATGGTGT 59.092 43.478 0.00 0.00 29.72 4.16
3866 4209 4.553330 ACTAGGTGGTTAGTTCATGGTG 57.447 45.455 0.00 0.00 29.72 4.17
3873 4216 2.893424 TCCCGAACTAGGTGGTTAGTT 58.107 47.619 0.00 0.00 44.38 2.24
3874 4217 2.610438 TCCCGAACTAGGTGGTTAGT 57.390 50.000 0.00 0.00 35.44 2.24
3875 4218 3.449737 TGATTCCCGAACTAGGTGGTTAG 59.550 47.826 0.00 0.00 0.00 2.34
3876 4219 3.443052 TGATTCCCGAACTAGGTGGTTA 58.557 45.455 0.00 0.00 0.00 2.85
3877 4220 2.262637 TGATTCCCGAACTAGGTGGTT 58.737 47.619 0.00 0.00 0.00 3.67
3878 4221 1.946984 TGATTCCCGAACTAGGTGGT 58.053 50.000 0.00 0.00 0.00 4.16
3879 4222 2.629051 GTTGATTCCCGAACTAGGTGG 58.371 52.381 0.00 0.00 0.00 4.61
3880 4223 2.629051 GGTTGATTCCCGAACTAGGTG 58.371 52.381 0.00 0.00 0.00 4.00
3881 4224 1.558294 GGGTTGATTCCCGAACTAGGT 59.442 52.381 0.00 0.00 37.93 3.08
3882 4225 2.327200 GGGTTGATTCCCGAACTAGG 57.673 55.000 0.00 0.00 37.93 3.02
3890 4233 3.542635 CCCGATGGAGGGTTGATTCCC 62.543 61.905 0.00 0.00 46.38 3.97
3891 4234 0.179018 CCCGATGGAGGGTTGATTCC 60.179 60.000 0.00 0.00 46.38 3.01
3892 4235 3.403936 CCCGATGGAGGGTTGATTC 57.596 57.895 0.00 0.00 46.38 2.52
3900 4243 2.722094 TGAATCAAAACCCGATGGAGG 58.278 47.619 0.00 0.00 34.81 4.30
3901 4244 4.989279 AATGAATCAAAACCCGATGGAG 57.011 40.909 0.00 0.00 34.81 3.86
3902 4245 4.769488 TCAAATGAATCAAAACCCGATGGA 59.231 37.500 0.00 0.00 34.81 3.41
3903 4246 5.070770 TCAAATGAATCAAAACCCGATGG 57.929 39.130 0.00 0.00 37.80 3.51
3904 4247 4.563976 GCTCAAATGAATCAAAACCCGATG 59.436 41.667 0.00 0.00 0.00 3.84
3905 4248 4.675146 CGCTCAAATGAATCAAAACCCGAT 60.675 41.667 0.00 0.00 0.00 4.18
3906 4249 3.365868 CGCTCAAATGAATCAAAACCCGA 60.366 43.478 0.00 0.00 0.00 5.14
3907 4250 2.916716 CGCTCAAATGAATCAAAACCCG 59.083 45.455 0.00 0.00 0.00 5.28
3908 4251 4.173036 TCGCTCAAATGAATCAAAACCC 57.827 40.909 0.00 0.00 0.00 4.11
3909 4252 7.701924 TCAATATCGCTCAAATGAATCAAAACC 59.298 33.333 0.00 0.00 0.00 3.27
3910 4253 8.526681 GTCAATATCGCTCAAATGAATCAAAAC 58.473 33.333 0.00 0.00 0.00 2.43
3911 4254 7.701924 GGTCAATATCGCTCAAATGAATCAAAA 59.298 33.333 0.00 0.00 0.00 2.44
3912 4255 7.195646 GGTCAATATCGCTCAAATGAATCAAA 58.804 34.615 0.00 0.00 0.00 2.69
3913 4256 6.511605 CGGTCAATATCGCTCAAATGAATCAA 60.512 38.462 0.00 0.00 0.00 2.57
3914 4257 5.050159 CGGTCAATATCGCTCAAATGAATCA 60.050 40.000 0.00 0.00 0.00 2.57
3915 4258 5.377358 CGGTCAATATCGCTCAAATGAATC 58.623 41.667 0.00 0.00 0.00 2.52
3916 4259 5.348418 CGGTCAATATCGCTCAAATGAAT 57.652 39.130 0.00 0.00 0.00 2.57
3917 4260 4.794248 CGGTCAATATCGCTCAAATGAA 57.206 40.909 0.00 0.00 0.00 2.57
3927 4270 1.195448 GCCAATCAGCGGTCAATATCG 59.805 52.381 0.00 0.00 0.00 2.92
3928 4271 1.537202 GGCCAATCAGCGGTCAATATC 59.463 52.381 0.00 0.00 0.00 1.63
3929 4272 1.133823 TGGCCAATCAGCGGTCAATAT 60.134 47.619 0.61 0.00 34.48 1.28
3930 4273 0.254462 TGGCCAATCAGCGGTCAATA 59.746 50.000 0.61 0.00 34.48 1.90
3931 4274 0.396139 ATGGCCAATCAGCGGTCAAT 60.396 50.000 10.96 0.00 42.54 2.57
3932 4275 0.611618 AATGGCCAATCAGCGGTCAA 60.612 50.000 10.96 0.00 42.54 3.18
3933 4276 1.001020 AATGGCCAATCAGCGGTCA 60.001 52.632 10.96 0.00 43.65 4.02
3934 4277 1.031571 TCAATGGCCAATCAGCGGTC 61.032 55.000 10.96 0.00 0.00 4.79
3935 4278 1.001020 TCAATGGCCAATCAGCGGT 60.001 52.632 10.96 0.00 0.00 5.68
3936 4279 1.314534 TGTCAATGGCCAATCAGCGG 61.315 55.000 10.96 0.00 0.00 5.52
3937 4280 0.742505 ATGTCAATGGCCAATCAGCG 59.257 50.000 10.96 0.00 0.00 5.18
3938 4281 1.479323 ACATGTCAATGGCCAATCAGC 59.521 47.619 10.96 0.00 38.19 4.26
3939 4282 2.756207 TGACATGTCAATGGCCAATCAG 59.244 45.455 26.02 0.00 41.66 2.90
3940 4283 2.492881 GTGACATGTCAATGGCCAATCA 59.507 45.455 29.42 7.28 41.66 2.57
3941 4284 2.159198 GGTGACATGTCAATGGCCAATC 60.159 50.000 29.42 13.62 41.66 2.67
3942 4285 1.826720 GGTGACATGTCAATGGCCAAT 59.173 47.619 29.42 0.00 41.66 3.16
3943 4286 1.203038 AGGTGACATGTCAATGGCCAA 60.203 47.619 29.42 1.84 41.66 4.52
3944 4287 0.405198 AGGTGACATGTCAATGGCCA 59.595 50.000 29.42 8.56 41.66 5.36
3945 4288 1.549203 AAGGTGACATGTCAATGGCC 58.451 50.000 29.42 24.29 41.66 5.36
3946 4289 3.005684 TCAAAAGGTGACATGTCAATGGC 59.994 43.478 29.42 16.81 42.81 4.40
3947 4290 4.852134 TCAAAAGGTGACATGTCAATGG 57.148 40.909 29.42 15.46 41.85 3.16
3958 4301 0.402861 AGGAGGGGGTCAAAAGGTGA 60.403 55.000 0.00 0.00 0.00 4.02
3959 4302 0.482887 AAGGAGGGGGTCAAAAGGTG 59.517 55.000 0.00 0.00 0.00 4.00
3960 4303 1.709115 GTAAGGAGGGGGTCAAAAGGT 59.291 52.381 0.00 0.00 0.00 3.50
3961 4304 1.708551 TGTAAGGAGGGGGTCAAAAGG 59.291 52.381 0.00 0.00 0.00 3.11
3962 4305 3.245264 ACATGTAAGGAGGGGGTCAAAAG 60.245 47.826 0.00 0.00 0.00 2.27
3963 4306 2.719705 ACATGTAAGGAGGGGGTCAAAA 59.280 45.455 0.00 0.00 0.00 2.44
3964 4307 2.041081 CACATGTAAGGAGGGGGTCAAA 59.959 50.000 0.00 0.00 0.00 2.69
3965 4308 1.633432 CACATGTAAGGAGGGGGTCAA 59.367 52.381 0.00 0.00 0.00 3.18
3966 4309 1.285280 CACATGTAAGGAGGGGGTCA 58.715 55.000 0.00 0.00 0.00 4.02
3967 4310 0.546598 CCACATGTAAGGAGGGGGTC 59.453 60.000 0.00 0.00 0.00 4.46
3968 4311 0.919289 CCCACATGTAAGGAGGGGGT 60.919 60.000 9.84 0.00 33.40 4.95
3969 4312 0.623324 TCCCACATGTAAGGAGGGGG 60.623 60.000 16.13 12.47 40.02 5.40
3970 4313 0.546598 GTCCCACATGTAAGGAGGGG 59.453 60.000 15.37 12.68 40.02 4.79
3971 4314 0.546598 GGTCCCACATGTAAGGAGGG 59.453 60.000 15.37 13.34 40.98 4.30
3972 4315 0.546598 GGGTCCCACATGTAAGGAGG 59.453 60.000 15.37 4.76 0.00 4.30
3973 4316 1.285280 TGGGTCCCACATGTAAGGAG 58.715 55.000 15.37 1.73 0.00 3.69
3974 4317 3.503974 TGGGTCCCACATGTAAGGA 57.496 52.632 6.47 11.80 0.00 3.36
3984 4327 2.899906 TTCCCTATATGTGGGTCCCA 57.100 50.000 6.47 6.47 44.84 4.37
3985 4328 4.167307 TCTTTTTCCCTATATGTGGGTCCC 59.833 45.833 0.00 0.00 44.84 4.46
3986 4329 5.382664 TCTTTTTCCCTATATGTGGGTCC 57.617 43.478 13.28 0.00 44.84 4.46
3987 4330 7.712204 TTTTCTTTTTCCCTATATGTGGGTC 57.288 36.000 13.28 0.00 44.84 4.46
3988 4331 9.777008 TTATTTTCTTTTTCCCTATATGTGGGT 57.223 29.630 13.28 0.00 44.84 4.51
4023 4366 9.935682 GCGAGAGAGATATAAGATAGAGAATTG 57.064 37.037 0.00 0.00 0.00 2.32
4024 4367 9.905713 AGCGAGAGAGATATAAGATAGAGAATT 57.094 33.333 0.00 0.00 0.00 2.17
4025 4368 9.330063 CAGCGAGAGAGATATAAGATAGAGAAT 57.670 37.037 0.00 0.00 0.00 2.40
4026 4369 7.279981 GCAGCGAGAGAGATATAAGATAGAGAA 59.720 40.741 0.00 0.00 0.00 2.87
4027 4370 6.761242 GCAGCGAGAGAGATATAAGATAGAGA 59.239 42.308 0.00 0.00 0.00 3.10
4028 4371 6.538381 TGCAGCGAGAGAGATATAAGATAGAG 59.462 42.308 0.00 0.00 0.00 2.43
4029 4372 6.410540 TGCAGCGAGAGAGATATAAGATAGA 58.589 40.000 0.00 0.00 0.00 1.98
4030 4373 6.676237 TGCAGCGAGAGAGATATAAGATAG 57.324 41.667 0.00 0.00 0.00 2.08
4031 4374 7.337942 TCAATGCAGCGAGAGAGATATAAGATA 59.662 37.037 0.00 0.00 0.00 1.98
4032 4375 6.152492 TCAATGCAGCGAGAGAGATATAAGAT 59.848 38.462 0.00 0.00 0.00 2.40
4033 4376 5.474876 TCAATGCAGCGAGAGAGATATAAGA 59.525 40.000 0.00 0.00 0.00 2.10
4034 4377 5.707931 TCAATGCAGCGAGAGAGATATAAG 58.292 41.667 0.00 0.00 0.00 1.73
4035 4378 5.712152 TCAATGCAGCGAGAGAGATATAA 57.288 39.130 0.00 0.00 0.00 0.98
4036 4379 5.911378 ATCAATGCAGCGAGAGAGATATA 57.089 39.130 0.00 0.00 0.00 0.86
4037 4380 4.804868 ATCAATGCAGCGAGAGAGATAT 57.195 40.909 0.00 0.00 0.00 1.63
4038 4381 4.304939 CAATCAATGCAGCGAGAGAGATA 58.695 43.478 0.00 0.00 0.00 1.98
4039 4382 3.132160 CAATCAATGCAGCGAGAGAGAT 58.868 45.455 0.00 0.00 0.00 2.75
4040 4383 2.547826 CAATCAATGCAGCGAGAGAGA 58.452 47.619 0.00 0.00 0.00 3.10
4052 4395 3.454375 GGGAATTGAGCAGCAATCAATG 58.546 45.455 9.95 0.00 46.25 2.82
4053 4396 2.433239 GGGGAATTGAGCAGCAATCAAT 59.567 45.455 4.41 4.41 46.25 2.57
4054 4397 1.826720 GGGGAATTGAGCAGCAATCAA 59.173 47.619 5.45 0.00 46.25 2.57
4055 4398 1.477553 GGGGAATTGAGCAGCAATCA 58.522 50.000 5.45 0.00 46.25 2.57
4056 4399 0.749049 GGGGGAATTGAGCAGCAATC 59.251 55.000 5.45 0.00 46.25 2.67
4058 4401 0.899717 GTGGGGGAATTGAGCAGCAA 60.900 55.000 0.00 0.00 41.53 3.91
4059 4402 1.304381 GTGGGGGAATTGAGCAGCA 60.304 57.895 0.00 0.00 0.00 4.41
4060 4403 2.054453 GGTGGGGGAATTGAGCAGC 61.054 63.158 0.00 0.00 0.00 5.25
4061 4404 1.750399 CGGTGGGGGAATTGAGCAG 60.750 63.158 0.00 0.00 0.00 4.24
4062 4405 2.354729 CGGTGGGGGAATTGAGCA 59.645 61.111 0.00 0.00 0.00 4.26
4063 4406 3.140814 GCGGTGGGGGAATTGAGC 61.141 66.667 0.00 0.00 0.00 4.26
4064 4407 2.440247 GGCGGTGGGGGAATTGAG 60.440 66.667 0.00 0.00 0.00 3.02
4065 4408 4.418328 CGGCGGTGGGGGAATTGA 62.418 66.667 0.00 0.00 0.00 2.57
4083 4426 4.899239 GGGCGATGGCGAGGAGTG 62.899 72.222 0.00 0.00 41.24 3.51
4085 4428 4.598894 CTGGGCGATGGCGAGGAG 62.599 72.222 0.00 0.00 41.24 3.69
4092 4435 3.426309 ATTGGAGGCTGGGCGATGG 62.426 63.158 0.00 0.00 0.00 3.51
4093 4436 1.895707 GATTGGAGGCTGGGCGATG 60.896 63.158 0.00 0.00 0.00 3.84
4094 4437 1.639635 AAGATTGGAGGCTGGGCGAT 61.640 55.000 0.00 0.00 0.00 4.58
4095 4438 2.257409 GAAGATTGGAGGCTGGGCGA 62.257 60.000 0.00 0.00 0.00 5.54
4096 4439 1.821332 GAAGATTGGAGGCTGGGCG 60.821 63.158 0.00 0.00 0.00 6.13
4097 4440 0.033699 AAGAAGATTGGAGGCTGGGC 60.034 55.000 0.00 0.00 0.00 5.36
4098 4441 1.409381 GGAAGAAGATTGGAGGCTGGG 60.409 57.143 0.00 0.00 0.00 4.45
4099 4442 1.563410 AGGAAGAAGATTGGAGGCTGG 59.437 52.381 0.00 0.00 0.00 4.85
4100 4443 3.054508 AGAAGGAAGAAGATTGGAGGCTG 60.055 47.826 0.00 0.00 0.00 4.85
4101 4444 3.188773 AGAAGGAAGAAGATTGGAGGCT 58.811 45.455 0.00 0.00 0.00 4.58
4102 4445 3.540617 GAGAAGGAAGAAGATTGGAGGC 58.459 50.000 0.00 0.00 0.00 4.70
4103 4446 3.196685 ACGAGAAGGAAGAAGATTGGAGG 59.803 47.826 0.00 0.00 0.00 4.30
4104 4447 4.429108 GACGAGAAGGAAGAAGATTGGAG 58.571 47.826 0.00 0.00 0.00 3.86
4105 4448 3.195825 GGACGAGAAGGAAGAAGATTGGA 59.804 47.826 0.00 0.00 0.00 3.53
4106 4449 3.055819 TGGACGAGAAGGAAGAAGATTGG 60.056 47.826 0.00 0.00 0.00 3.16
4107 4450 4.193826 TGGACGAGAAGGAAGAAGATTG 57.806 45.455 0.00 0.00 0.00 2.67
4108 4451 4.563786 GGTTGGACGAGAAGGAAGAAGATT 60.564 45.833 0.00 0.00 0.00 2.40
4109 4452 3.055747 GGTTGGACGAGAAGGAAGAAGAT 60.056 47.826 0.00 0.00 0.00 2.40
4110 4453 2.299297 GGTTGGACGAGAAGGAAGAAGA 59.701 50.000 0.00 0.00 0.00 2.87
4111 4454 2.689646 GGTTGGACGAGAAGGAAGAAG 58.310 52.381 0.00 0.00 0.00 2.85
4112 4455 1.000506 CGGTTGGACGAGAAGGAAGAA 59.999 52.381 0.00 0.00 35.47 2.52
4113 4456 0.601558 CGGTTGGACGAGAAGGAAGA 59.398 55.000 0.00 0.00 35.47 2.87
4114 4457 1.014564 GCGGTTGGACGAGAAGGAAG 61.015 60.000 0.00 0.00 35.47 3.46
4115 4458 1.005394 GCGGTTGGACGAGAAGGAA 60.005 57.895 0.00 0.00 35.47 3.36
4116 4459 2.654877 GCGGTTGGACGAGAAGGA 59.345 61.111 0.00 0.00 35.47 3.36
4117 4460 2.434359 GGCGGTTGGACGAGAAGG 60.434 66.667 0.00 0.00 35.47 3.46
4118 4461 2.434359 GGGCGGTTGGACGAGAAG 60.434 66.667 0.00 0.00 35.47 2.85
4119 4462 4.367023 CGGGCGGTTGGACGAGAA 62.367 66.667 0.00 0.00 35.47 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.