Multiple sequence alignment - TraesCS5D01G048000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G048000 chr5D 100.000 3249 0 0 1 3249 45937693 45940941 0.000000e+00 6000.0
1 TraesCS5D01G048000 chr5D 82.188 1819 254 44 1118 2893 46128553 46126762 0.000000e+00 1500.0
2 TraesCS5D01G048000 chr5D 82.178 1543 200 43 994 2489 45894565 45896079 0.000000e+00 1256.0
3 TraesCS5D01G048000 chr5D 82.159 1519 198 25 1002 2480 46275840 46274355 0.000000e+00 1236.0
4 TraesCS5D01G048000 chr5D 83.830 637 83 9 1118 1735 45873197 45873832 3.610000e-164 588.0
5 TraesCS5D01G048000 chr5D 83.824 136 21 1 83 218 355044871 355045005 9.460000e-26 128.0
6 TraesCS5D01G048000 chr5A 96.454 1974 62 6 918 2886 36799503 36797533 0.000000e+00 3251.0
7 TraesCS5D01G048000 chr5A 84.483 1392 182 16 1118 2480 37402238 37400852 0.000000e+00 1343.0
8 TraesCS5D01G048000 chr5A 82.875 1454 216 11 994 2415 37194482 37193030 0.000000e+00 1275.0
9 TraesCS5D01G048000 chr5A 89.275 662 60 7 15 675 36811817 36811166 0.000000e+00 819.0
10 TraesCS5D01G048000 chr5A 96.206 369 11 2 2884 3249 36773823 36773455 4.640000e-168 601.0
11 TraesCS5D01G048000 chr5A 94.737 152 8 0 767 918 673770568 673770417 1.510000e-58 237.0
12 TraesCS5D01G048000 chr5A 93.377 151 10 0 766 916 640067643 640067793 1.170000e-54 224.0
13 TraesCS5D01G048000 chr5A 78.387 310 60 5 2484 2792 37400713 37400410 9.200000e-46 195.0
14 TraesCS5D01G048000 chr5B 92.902 1592 91 7 918 2489 46636145 46634556 0.000000e+00 2294.0
15 TraesCS5D01G048000 chr5B 85.920 1527 168 23 967 2448 46747412 46745888 0.000000e+00 1585.0
16 TraesCS5D01G048000 chr5B 81.257 1782 269 36 1062 2793 46152917 46151151 0.000000e+00 1380.0
17 TraesCS5D01G048000 chr5B 85.126 1385 166 29 966 2318 46768542 46767166 0.000000e+00 1380.0
18 TraesCS5D01G048000 chr5B 83.244 1498 202 27 1023 2480 48146305 48147793 0.000000e+00 1330.0
19 TraesCS5D01G048000 chr5B 94.308 773 32 8 2488 3248 46564501 46563729 0.000000e+00 1173.0
20 TraesCS5D01G048000 chr5B 92.969 768 45 7 2488 3247 46580718 46579952 0.000000e+00 1110.0
21 TraesCS5D01G048000 chr5B 91.986 574 41 3 6 579 46684296 46683728 0.000000e+00 800.0
22 TraesCS5D01G048000 chr5B 94.433 467 20 5 2488 2949 46630120 46629655 0.000000e+00 713.0
23 TraesCS5D01G048000 chr5B 87.945 506 38 11 2754 3249 46631787 46631295 2.810000e-160 575.0
24 TraesCS5D01G048000 chr5B 94.863 292 15 0 2957 3248 46581748 46581457 1.060000e-124 457.0
25 TraesCS5D01G048000 chr5B 90.303 165 16 0 1118 1282 46771076 46770912 1.960000e-52 217.0
26 TraesCS5D01G048000 chr5B 88.710 62 1 2 669 730 46636607 46636552 1.620000e-08 71.3
27 TraesCS5D01G048000 chr6B 79.663 1544 230 43 1118 2605 706868712 706870227 0.000000e+00 1035.0
28 TraesCS5D01G048000 chr3A 94.304 158 9 0 767 924 517776179 517776022 3.240000e-60 243.0
29 TraesCS5D01G048000 chr2B 94.079 152 9 0 767 918 601939084 601939235 7.010000e-57 231.0
30 TraesCS5D01G048000 chr7A 92.949 156 10 1 763 918 91517353 91517507 3.260000e-55 226.0
31 TraesCS5D01G048000 chr2D 92.667 150 11 0 768 917 307423620 307423471 1.960000e-52 217.0
32 TraesCS5D01G048000 chr2D 81.481 81 11 4 380 459 119670303 119670380 2.710000e-06 63.9
33 TraesCS5D01G048000 chr3D 83.406 229 36 2 127 353 587870869 587870641 9.130000e-51 211.0
34 TraesCS5D01G048000 chr3D 76.619 278 53 10 73 346 548962169 548962438 3.380000e-30 143.0
35 TraesCS5D01G048000 chr3B 80.682 264 47 4 92 353 785302289 785302028 5.500000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G048000 chr5D 45937693 45940941 3248 False 6000.000 6000 100.0000 1 3249 1 chr5D.!!$F3 3248
1 TraesCS5D01G048000 chr5D 46126762 46128553 1791 True 1500.000 1500 82.1880 1118 2893 1 chr5D.!!$R1 1775
2 TraesCS5D01G048000 chr5D 45894565 45896079 1514 False 1256.000 1256 82.1780 994 2489 1 chr5D.!!$F2 1495
3 TraesCS5D01G048000 chr5D 46274355 46275840 1485 True 1236.000 1236 82.1590 1002 2480 1 chr5D.!!$R2 1478
4 TraesCS5D01G048000 chr5D 45873197 45873832 635 False 588.000 588 83.8300 1118 1735 1 chr5D.!!$F1 617
5 TraesCS5D01G048000 chr5A 36797533 36799503 1970 True 3251.000 3251 96.4540 918 2886 1 chr5A.!!$R2 1968
6 TraesCS5D01G048000 chr5A 37193030 37194482 1452 True 1275.000 1275 82.8750 994 2415 1 chr5A.!!$R4 1421
7 TraesCS5D01G048000 chr5A 36811166 36811817 651 True 819.000 819 89.2750 15 675 1 chr5A.!!$R3 660
8 TraesCS5D01G048000 chr5A 37400410 37402238 1828 True 769.000 1343 81.4350 1118 2792 2 chr5A.!!$R6 1674
9 TraesCS5D01G048000 chr5B 46745888 46747412 1524 True 1585.000 1585 85.9200 967 2448 1 chr5B.!!$R4 1481
10 TraesCS5D01G048000 chr5B 46151151 46152917 1766 True 1380.000 1380 81.2570 1062 2793 1 chr5B.!!$R1 1731
11 TraesCS5D01G048000 chr5B 48146305 48147793 1488 False 1330.000 1330 83.2440 1023 2480 1 chr5B.!!$F1 1457
12 TraesCS5D01G048000 chr5B 46563729 46564501 772 True 1173.000 1173 94.3080 2488 3248 1 chr5B.!!$R2 760
13 TraesCS5D01G048000 chr5B 46629655 46636607 6952 True 913.325 2294 90.9975 669 3249 4 chr5B.!!$R6 2580
14 TraesCS5D01G048000 chr5B 46683728 46684296 568 True 800.000 800 91.9860 6 579 1 chr5B.!!$R3 573
15 TraesCS5D01G048000 chr5B 46767166 46771076 3910 True 798.500 1380 87.7145 966 2318 2 chr5B.!!$R7 1352
16 TraesCS5D01G048000 chr5B 46579952 46581748 1796 True 783.500 1110 93.9160 2488 3248 2 chr5B.!!$R5 760
17 TraesCS5D01G048000 chr6B 706868712 706870227 1515 False 1035.000 1035 79.6630 1118 2605 1 chr6B.!!$F1 1487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 1218 0.034477 CTATCCGTTGGCCCCACTTT 60.034 55.0 0.0 0.0 0.0 2.66 F
842 1220 0.034477 ATCCGTTGGCCCCACTTTAG 60.034 55.0 0.0 0.0 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 3768 3.600388 ACTTATCTGCAGCCACAAGTAC 58.400 45.455 9.47 0.0 0.0 2.73 R
2434 4364 5.008316 AGACACTAAAGTAAAAAGGGCAACG 59.992 40.000 0.00 0.0 37.6 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.097981 CCTATATGAATGCATCTCTCCTAGCA 59.902 42.308 0.00 0.00 41.73 3.49
44 45 4.962362 TCCTAGCACCATGAACAGAAGATA 59.038 41.667 0.00 0.00 0.00 1.98
90 91 4.036262 CGAAGTCAGAACTCTAGATCCAGG 59.964 50.000 0.00 0.00 33.48 4.45
124 125 1.165907 TTGCCAGGTGACAGAAAGCG 61.166 55.000 0.00 0.00 0.00 4.68
157 158 2.328099 GCCACTCCACTTCTTGCCG 61.328 63.158 0.00 0.00 0.00 5.69
181 182 0.392706 CACAACCAAAAGGGAAGGCC 59.607 55.000 0.00 0.00 41.15 5.19
189 190 4.660938 AGGGAAGGCCAACACCGC 62.661 66.667 5.01 0.00 35.15 5.68
209 210 4.738998 CCATGGTGCCCGCCAGAA 62.739 66.667 2.57 0.00 42.47 3.02
211 212 2.361610 ATGGTGCCCGCCAGAAAG 60.362 61.111 6.71 0.00 42.47 2.62
215 216 4.594854 TGCCCGCCAGAAAGCCAA 62.595 61.111 0.00 0.00 0.00 4.52
217 218 3.373565 CCCGCCAGAAAGCCAACC 61.374 66.667 0.00 0.00 0.00 3.77
218 219 2.597217 CCGCCAGAAAGCCAACCA 60.597 61.111 0.00 0.00 0.00 3.67
219 220 1.978617 CCGCCAGAAAGCCAACCAT 60.979 57.895 0.00 0.00 0.00 3.55
220 221 1.213537 CGCCAGAAAGCCAACCATG 59.786 57.895 0.00 0.00 0.00 3.66
221 222 1.079612 GCCAGAAAGCCAACCATGC 60.080 57.895 0.00 0.00 0.00 4.06
224 225 1.074775 AGAAAGCCAACCATGCGGA 59.925 52.632 0.00 0.00 35.59 5.54
225 226 1.212751 GAAAGCCAACCATGCGGAC 59.787 57.895 0.00 0.00 35.59 4.79
226 227 2.212900 GAAAGCCAACCATGCGGACC 62.213 60.000 0.00 0.00 35.59 4.46
227 228 2.992817 AAAGCCAACCATGCGGACCA 62.993 55.000 0.00 0.00 35.59 4.02
231 232 0.752743 CCAACCATGCGGACCATCAT 60.753 55.000 0.00 0.00 35.59 2.45
232 233 0.664761 CAACCATGCGGACCATCATC 59.335 55.000 0.00 0.00 35.59 2.92
233 234 0.548031 AACCATGCGGACCATCATCT 59.452 50.000 0.00 0.00 35.59 2.90
235 236 3.532451 ACCATGCGGACCATCATCTGG 62.532 57.143 0.00 0.00 43.07 3.86
244 245 0.107017 CCATCATCTGGGGTCACCAC 60.107 60.000 0.00 0.00 46.80 4.16
245 246 0.107017 CATCATCTGGGGTCACCACC 60.107 60.000 0.00 0.00 46.80 4.61
258 259 3.655358 CCACCCCGGTATCCATGT 58.345 61.111 0.00 0.00 0.00 3.21
259 260 1.450211 CCACCCCGGTATCCATGTC 59.550 63.158 0.00 0.00 0.00 3.06
260 261 1.450211 CACCCCGGTATCCATGTCC 59.550 63.158 0.00 0.00 0.00 4.02
261 262 2.138179 ACCCCGGTATCCATGTCCG 61.138 63.158 0.00 8.28 43.30 4.79
263 264 1.666011 CCCGGTATCCATGTCCGAG 59.334 63.158 14.35 1.60 46.05 4.63
264 265 0.826256 CCCGGTATCCATGTCCGAGA 60.826 60.000 14.35 0.00 46.05 4.04
265 266 0.314302 CCGGTATCCATGTCCGAGAC 59.686 60.000 14.35 2.90 46.05 3.36
266 267 1.029681 CGGTATCCATGTCCGAGACA 58.970 55.000 8.81 8.81 46.90 3.41
267 268 1.269102 CGGTATCCATGTCCGAGACAC 60.269 57.143 8.60 0.00 45.65 3.67
269 270 1.754803 GTATCCATGTCCGAGACACCA 59.245 52.381 8.60 0.00 45.65 4.17
270 271 0.537188 ATCCATGTCCGAGACACCAC 59.463 55.000 8.60 0.00 45.65 4.16
272 273 1.671166 CATGTCCGAGACACCACCA 59.329 57.895 8.60 0.00 45.65 4.17
277 278 3.041940 CGAGACACCACCAACCGC 61.042 66.667 0.00 0.00 0.00 5.68
279 280 4.265056 AGACACCACCAACCGCCC 62.265 66.667 0.00 0.00 0.00 6.13
282 283 4.885270 CACCACCAACCGCCCACA 62.885 66.667 0.00 0.00 0.00 4.17
283 284 3.897122 ACCACCAACCGCCCACAT 61.897 61.111 0.00 0.00 0.00 3.21
284 285 3.061848 CCACCAACCGCCCACATC 61.062 66.667 0.00 0.00 0.00 3.06
285 286 2.282110 CACCAACCGCCCACATCA 60.282 61.111 0.00 0.00 0.00 3.07
306 307 4.584518 TGCACCCACCACAGCAGG 62.585 66.667 0.00 0.00 32.48 4.85
308 309 2.033141 CACCCACCACAGCAGGAG 59.967 66.667 0.00 0.00 0.00 3.69
309 310 3.252284 ACCCACCACAGCAGGAGG 61.252 66.667 0.00 0.00 38.93 4.30
310 311 2.930019 CCCACCACAGCAGGAGGA 60.930 66.667 7.69 0.00 41.43 3.71
311 312 2.667418 CCACCACAGCAGGAGGAG 59.333 66.667 1.00 0.00 41.43 3.69
312 313 2.219875 CCACCACAGCAGGAGGAGT 61.220 63.158 1.00 0.00 41.43 3.85
314 315 0.976641 CACCACAGCAGGAGGAGTAA 59.023 55.000 0.00 0.00 0.00 2.24
316 317 1.625818 ACCACAGCAGGAGGAGTAAAG 59.374 52.381 0.00 0.00 0.00 1.85
318 319 2.354203 CCACAGCAGGAGGAGTAAAGAC 60.354 54.545 0.00 0.00 0.00 3.01
319 320 1.546476 ACAGCAGGAGGAGTAAAGACG 59.454 52.381 0.00 0.00 0.00 4.18
320 321 1.546476 CAGCAGGAGGAGTAAAGACGT 59.454 52.381 0.00 0.00 0.00 4.34
321 322 1.819903 AGCAGGAGGAGTAAAGACGTC 59.180 52.381 7.70 7.70 0.00 4.34
322 323 1.819903 GCAGGAGGAGTAAAGACGTCT 59.180 52.381 13.58 13.58 0.00 4.18
323 324 2.159352 GCAGGAGGAGTAAAGACGTCTC 60.159 54.545 20.33 6.59 0.00 3.36
324 325 2.424246 CAGGAGGAGTAAAGACGTCTCC 59.576 54.545 20.33 15.42 45.56 3.71
333 334 3.388345 AAAGACGTCTCCTTTCACTCC 57.612 47.619 20.33 0.00 0.00 3.85
334 335 2.296073 AGACGTCTCCTTTCACTCCT 57.704 50.000 13.58 0.00 0.00 3.69
335 336 1.889829 AGACGTCTCCTTTCACTCCTG 59.110 52.381 13.58 0.00 0.00 3.86
336 337 0.318762 ACGTCTCCTTTCACTCCTGC 59.681 55.000 0.00 0.00 0.00 4.85
337 338 0.390472 CGTCTCCTTTCACTCCTGCC 60.390 60.000 0.00 0.00 0.00 4.85
339 340 1.078848 CTCCTTTCACTCCTGCCCG 60.079 63.158 0.00 0.00 0.00 6.13
340 341 2.045926 CCTTTCACTCCTGCCCGG 60.046 66.667 0.00 0.00 0.00 5.73
341 342 2.747855 CTTTCACTCCTGCCCGGC 60.748 66.667 1.04 1.04 0.00 6.13
342 343 3.551496 CTTTCACTCCTGCCCGGCA 62.551 63.158 12.67 12.67 36.92 5.69
343 344 2.826777 CTTTCACTCCTGCCCGGCAT 62.827 60.000 13.86 0.00 38.13 4.40
344 345 2.819984 TTTCACTCCTGCCCGGCATC 62.820 60.000 13.86 0.00 38.13 3.91
345 346 4.100084 CACTCCTGCCCGGCATCA 62.100 66.667 13.86 1.04 38.13 3.07
347 348 2.825836 CTCCTGCCCGGCATCAAC 60.826 66.667 13.86 0.00 38.13 3.18
349 350 4.738998 CCTGCCCGGCATCAACCA 62.739 66.667 13.86 0.00 38.13 3.67
350 351 3.443045 CTGCCCGGCATCAACCAC 61.443 66.667 13.86 0.00 38.13 4.16
354 355 4.402528 CCGGCATCAACCACGGGA 62.403 66.667 0.00 0.00 42.48 5.14
355 356 2.819595 CGGCATCAACCACGGGAG 60.820 66.667 0.00 0.00 0.00 4.30
357 358 3.134127 GCATCAACCACGGGAGCC 61.134 66.667 0.00 0.00 0.00 4.70
358 359 2.438434 CATCAACCACGGGAGCCC 60.438 66.667 0.00 0.00 0.00 5.19
363 364 3.192103 AACCACGGGAGCCCAACTC 62.192 63.158 6.34 0.00 45.45 3.01
373 374 2.911484 GAGCCCAACTCAGATGGTTAG 58.089 52.381 0.00 0.00 45.49 2.34
377 378 3.810743 GCCCAACTCAGATGGTTAGTTGT 60.811 47.826 12.05 0.00 45.51 3.32
380 381 5.301805 CCCAACTCAGATGGTTAGTTGTTTT 59.698 40.000 12.05 0.00 45.51 2.43
382 383 7.013846 CCCAACTCAGATGGTTAGTTGTTTTTA 59.986 37.037 12.05 0.00 45.51 1.52
384 385 9.965824 CAACTCAGATGGTTAGTTGTTTTTAAT 57.034 29.630 0.00 0.00 43.20 1.40
402 403 9.877096 GTTTTTAATACAATACAGACGTAGACG 57.123 33.333 0.00 0.00 46.33 4.18
403 404 7.669438 TTTAATACAATACAGACGTAGACGC 57.331 36.000 1.14 0.00 44.43 5.19
404 405 5.496133 AATACAATACAGACGTAGACGCT 57.504 39.130 1.14 0.00 44.43 5.07
409 410 4.728917 ATACAGACGTAGACGCTCATAC 57.271 45.455 1.14 0.00 44.43 2.39
410 411 2.353323 ACAGACGTAGACGCTCATACA 58.647 47.619 1.14 0.00 44.43 2.29
412 413 2.095372 CAGACGTAGACGCTCATACACA 59.905 50.000 1.14 0.00 44.43 3.72
415 416 2.174764 CGTAGACGCTCATACACACAC 58.825 52.381 0.00 0.00 0.00 3.82
421 422 5.520632 AGACGCTCATACACACACATATAC 58.479 41.667 0.00 0.00 0.00 1.47
423 424 5.902681 ACGCTCATACACACACATATACTT 58.097 37.500 0.00 0.00 0.00 2.24
424 425 7.012989 AGACGCTCATACACACACATATACTTA 59.987 37.037 0.00 0.00 0.00 2.24
425 426 7.658261 ACGCTCATACACACACATATACTTAT 58.342 34.615 0.00 0.00 0.00 1.73
426 427 8.141909 ACGCTCATACACACACATATACTTATT 58.858 33.333 0.00 0.00 0.00 1.40
444 445 6.658831 ACTTATTATATGAATGCACACACGC 58.341 36.000 0.00 0.00 0.00 5.34
447 448 1.517242 TATGAATGCACACACGCACA 58.483 45.000 0.00 0.00 46.56 4.57
448 449 0.040157 ATGAATGCACACACGCACAC 60.040 50.000 0.00 0.00 46.56 3.82
450 451 0.865111 GAATGCACACACGCACACTA 59.135 50.000 0.00 0.00 46.56 2.74
451 452 0.586319 AATGCACACACGCACACTAC 59.414 50.000 0.00 0.00 46.56 2.73
452 453 1.227999 ATGCACACACGCACACTACC 61.228 55.000 0.00 0.00 46.56 3.18
454 455 1.069090 CACACACGCACACTACCCT 59.931 57.895 0.00 0.00 0.00 4.34
457 458 1.067142 ACACACGCACACTACCCTATG 60.067 52.381 0.00 0.00 0.00 2.23
458 459 1.203758 CACACGCACACTACCCTATGA 59.796 52.381 0.00 0.00 0.00 2.15
464 465 3.467803 GCACACTACCCTATGAATGTCC 58.532 50.000 0.00 0.00 0.00 4.02
465 466 3.134804 GCACACTACCCTATGAATGTCCT 59.865 47.826 0.00 0.00 0.00 3.85
468 469 5.833667 CACACTACCCTATGAATGTCCTAGA 59.166 44.000 0.00 0.00 0.00 2.43
469 470 5.834204 ACACTACCCTATGAATGTCCTAGAC 59.166 44.000 0.00 0.00 0.00 2.59
473 474 5.529289 ACCCTATGAATGTCCTAGACTTGA 58.471 41.667 0.00 0.00 33.15 3.02
481 482 4.174411 TGTCCTAGACTTGACATTGACG 57.826 45.455 3.99 0.00 36.62 4.35
482 483 2.924290 GTCCTAGACTTGACATTGACGC 59.076 50.000 0.00 0.00 0.00 5.19
483 484 2.826128 TCCTAGACTTGACATTGACGCT 59.174 45.455 0.00 0.00 0.00 5.07
484 485 3.119459 TCCTAGACTTGACATTGACGCTC 60.119 47.826 0.00 0.00 0.00 5.03
487 488 4.456280 AGACTTGACATTGACGCTCATA 57.544 40.909 0.00 0.00 0.00 2.15
489 490 5.423015 AGACTTGACATTGACGCTCATATT 58.577 37.500 0.00 0.00 0.00 1.28
490 491 5.877012 AGACTTGACATTGACGCTCATATTT 59.123 36.000 0.00 0.00 0.00 1.40
491 492 6.372659 AGACTTGACATTGACGCTCATATTTT 59.627 34.615 0.00 0.00 0.00 1.82
492 493 6.913170 ACTTGACATTGACGCTCATATTTTT 58.087 32.000 0.00 0.00 0.00 1.94
493 494 7.023575 ACTTGACATTGACGCTCATATTTTTC 58.976 34.615 0.00 0.00 0.00 2.29
495 496 6.545508 TGACATTGACGCTCATATTTTTCTG 58.454 36.000 0.00 0.00 0.00 3.02
499 500 8.246180 ACATTGACGCTCATATTTTTCTGATTT 58.754 29.630 0.00 0.00 0.00 2.17
500 501 9.079833 CATTGACGCTCATATTTTTCTGATTTT 57.920 29.630 0.00 0.00 0.00 1.82
519 520 2.778187 TTTTCCAAACCTTTACGGCG 57.222 45.000 4.80 4.80 35.61 6.46
528 529 2.774687 ACCTTTACGGCGATGTTCTTT 58.225 42.857 16.62 0.00 35.61 2.52
529 530 3.143728 ACCTTTACGGCGATGTTCTTTT 58.856 40.909 16.62 0.00 35.61 2.27
530 531 4.317488 ACCTTTACGGCGATGTTCTTTTA 58.683 39.130 16.62 0.00 35.61 1.52
535 536 2.478894 ACGGCGATGTTCTTTTAGTGTG 59.521 45.455 16.62 0.00 0.00 3.82
538 539 3.994392 GGCGATGTTCTTTTAGTGTGAGA 59.006 43.478 0.00 0.00 0.00 3.27
539 540 4.451096 GGCGATGTTCTTTTAGTGTGAGAA 59.549 41.667 0.00 0.00 0.00 2.87
541 542 6.312918 GGCGATGTTCTTTTAGTGTGAGAATA 59.687 38.462 0.00 0.00 32.59 1.75
542 543 7.011482 GGCGATGTTCTTTTAGTGTGAGAATAT 59.989 37.037 0.00 0.00 35.03 1.28
549 550 9.542462 TTCTTTTAGTGTGAGAATATATTCCCG 57.458 33.333 19.67 0.00 37.51 5.14
550 551 8.701895 TCTTTTAGTGTGAGAATATATTCCCGT 58.298 33.333 19.67 3.86 37.51 5.28
552 553 5.122512 AGTGTGAGAATATATTCCCGTCG 57.877 43.478 19.67 0.00 37.51 5.12
553 554 4.825634 AGTGTGAGAATATATTCCCGTCGA 59.174 41.667 19.67 2.40 37.51 4.20
556 557 7.176165 AGTGTGAGAATATATTCCCGTCGATTA 59.824 37.037 19.67 0.00 37.51 1.75
558 559 7.973944 TGTGAGAATATATTCCCGTCGATTATG 59.026 37.037 19.67 0.00 37.51 1.90
560 561 7.340999 TGAGAATATATTCCCGTCGATTATGGA 59.659 37.037 19.67 0.00 37.51 3.41
561 562 7.717568 AGAATATATTCCCGTCGATTATGGAG 58.282 38.462 19.67 0.00 37.51 3.86
564 565 1.037493 TCCCGTCGATTATGGAGGTG 58.963 55.000 0.00 0.00 36.17 4.00
565 566 0.600255 CCCGTCGATTATGGAGGTGC 60.600 60.000 0.00 0.00 36.17 5.01
566 567 0.104120 CCGTCGATTATGGAGGTGCA 59.896 55.000 0.00 0.00 36.17 4.57
568 569 1.794701 CGTCGATTATGGAGGTGCATG 59.205 52.381 0.00 0.00 0.00 4.06
569 570 2.803133 CGTCGATTATGGAGGTGCATGT 60.803 50.000 0.00 0.00 0.00 3.21
570 571 2.545526 GTCGATTATGGAGGTGCATGTG 59.454 50.000 0.00 0.00 0.00 3.21
574 575 3.929955 TTATGGAGGTGCATGTGATGA 57.070 42.857 0.00 0.00 0.00 2.92
576 577 0.986527 TGGAGGTGCATGTGATGACT 59.013 50.000 0.00 0.00 0.00 3.41
577 578 1.352017 TGGAGGTGCATGTGATGACTT 59.648 47.619 0.00 0.00 0.00 3.01
584 585 2.196749 GCATGTGATGACTTCGTCGAT 58.803 47.619 0.00 0.00 34.95 3.59
585 586 2.217393 GCATGTGATGACTTCGTCGATC 59.783 50.000 0.00 0.00 34.95 3.69
587 588 3.850122 TGTGATGACTTCGTCGATCTT 57.150 42.857 0.00 0.00 34.95 2.40
588 589 4.957759 TGTGATGACTTCGTCGATCTTA 57.042 40.909 0.00 0.00 34.95 2.10
589 590 5.305139 TGTGATGACTTCGTCGATCTTAA 57.695 39.130 0.00 0.00 34.95 1.85
590 591 5.332707 TGTGATGACTTCGTCGATCTTAAG 58.667 41.667 0.00 0.00 34.95 1.85
593 594 4.617808 TGACTTCGTCGATCTTAAGAGG 57.382 45.455 11.53 5.71 34.95 3.69
596 597 5.176407 ACTTCGTCGATCTTAAGAGGATG 57.824 43.478 11.53 14.75 34.63 3.51
599 600 3.046390 CGTCGATCTTAAGAGGATGTGC 58.954 50.000 11.53 0.00 0.00 4.57
600 601 3.385577 GTCGATCTTAAGAGGATGTGCC 58.614 50.000 11.53 0.00 0.00 5.01
601 602 2.365617 TCGATCTTAAGAGGATGTGCCC 59.634 50.000 11.53 0.00 37.37 5.36
602 603 2.760374 GATCTTAAGAGGATGTGCCCG 58.240 52.381 11.53 0.00 37.37 6.13
605 606 0.178068 TTAAGAGGATGTGCCCGCTC 59.822 55.000 0.00 0.00 35.21 5.03
606 607 0.975556 TAAGAGGATGTGCCCGCTCA 60.976 55.000 0.00 0.00 35.21 4.26
608 609 1.153086 GAGGATGTGCCCGCTCATT 60.153 57.895 5.77 0.00 37.37 2.57
609 610 1.153086 AGGATGTGCCCGCTCATTC 60.153 57.895 5.77 4.08 37.37 2.67
610 611 1.153086 GGATGTGCCCGCTCATTCT 60.153 57.895 5.77 0.00 31.36 2.40
611 612 0.749454 GGATGTGCCCGCTCATTCTT 60.749 55.000 5.77 0.00 31.36 2.52
613 614 1.064654 GATGTGCCCGCTCATTCTTTC 59.935 52.381 5.77 0.00 31.36 2.62
614 615 1.298157 TGTGCCCGCTCATTCTTTCG 61.298 55.000 0.00 0.00 0.00 3.46
615 616 1.745115 TGCCCGCTCATTCTTTCGG 60.745 57.895 0.00 0.00 41.41 4.30
616 617 1.449601 GCCCGCTCATTCTTTCGGA 60.450 57.895 0.65 0.00 44.23 4.55
617 618 1.432270 GCCCGCTCATTCTTTCGGAG 61.432 60.000 0.65 0.00 44.23 4.63
618 619 0.175760 CCCGCTCATTCTTTCGGAGA 59.824 55.000 0.65 0.00 44.23 3.71
621 622 1.260033 CGCTCATTCTTTCGGAGATGC 59.740 52.381 0.00 0.00 35.04 3.91
622 623 2.559440 GCTCATTCTTTCGGAGATGCT 58.441 47.619 0.00 0.00 35.04 3.79
623 624 2.543430 GCTCATTCTTTCGGAGATGCTC 59.457 50.000 0.00 0.00 35.04 4.26
624 625 3.790091 CTCATTCTTTCGGAGATGCTCA 58.210 45.455 0.00 0.00 35.04 4.26
628 629 5.302823 TCATTCTTTCGGAGATGCTCATAGA 59.697 40.000 0.00 0.00 35.04 1.98
631 632 4.646945 TCTTTCGGAGATGCTCATAGAGTT 59.353 41.667 0.00 0.00 35.04 3.01
633 634 5.697473 TTCGGAGATGCTCATAGAGTTAG 57.303 43.478 0.00 0.00 35.04 2.34
634 635 4.974399 TCGGAGATGCTCATAGAGTTAGA 58.026 43.478 0.00 0.00 31.08 2.10
637 638 5.334802 CGGAGATGCTCATAGAGTTAGAGTG 60.335 48.000 0.00 0.00 31.08 3.51
641 642 3.763897 TGCTCATAGAGTTAGAGTGTGCA 59.236 43.478 0.00 0.00 37.08 4.57
642 643 4.403752 TGCTCATAGAGTTAGAGTGTGCAT 59.596 41.667 0.00 0.00 35.27 3.96
645 646 5.654497 TCATAGAGTTAGAGTGTGCATGTG 58.346 41.667 0.00 0.00 0.00 3.21
647 648 6.377146 TCATAGAGTTAGAGTGTGCATGTGTA 59.623 38.462 0.00 0.00 0.00 2.90
648 649 4.810790 AGAGTTAGAGTGTGCATGTGTAC 58.189 43.478 0.00 0.00 0.00 2.90
651 652 5.551233 AGTTAGAGTGTGCATGTGTACATT 58.449 37.500 7.18 3.24 42.31 2.71
653 654 7.158697 AGTTAGAGTGTGCATGTGTACATTTA 58.841 34.615 7.18 0.00 42.31 1.40
659 660 8.560355 AGTGTGCATGTGTACATTTATAAAGA 57.440 30.769 7.18 0.00 42.31 2.52
702 703 3.194116 TGAGGGTCTATGTTTGTACCGTC 59.806 47.826 0.00 0.00 43.74 4.79
707 708 5.809051 GGGTCTATGTTTGTACCGTCTTAAG 59.191 44.000 0.00 0.00 32.53 1.85
708 709 6.393171 GGTCTATGTTTGTACCGTCTTAAGT 58.607 40.000 1.63 0.00 0.00 2.24
709 710 6.870439 GGTCTATGTTTGTACCGTCTTAAGTT 59.130 38.462 1.63 0.00 0.00 2.66
769 1147 3.071479 GCTACCTCATCACAAAACCGAA 58.929 45.455 0.00 0.00 0.00 4.30
771 1149 3.982576 ACCTCATCACAAAACCGAAAC 57.017 42.857 0.00 0.00 0.00 2.78
772 1150 3.551846 ACCTCATCACAAAACCGAAACT 58.448 40.909 0.00 0.00 0.00 2.66
774 1152 3.300009 CTCATCACAAAACCGAAACTGC 58.700 45.455 0.00 0.00 0.00 4.40
775 1153 2.948979 TCATCACAAAACCGAAACTGCT 59.051 40.909 0.00 0.00 0.00 4.24
776 1154 2.842208 TCACAAAACCGAAACTGCTG 57.158 45.000 0.00 0.00 0.00 4.41
778 1156 2.159448 TCACAAAACCGAAACTGCTGTG 60.159 45.455 0.00 0.00 35.21 3.66
779 1157 1.199624 CAAAACCGAAACTGCTGTGC 58.800 50.000 0.00 0.00 0.00 4.57
783 1161 2.551270 CGAAACTGCTGTGCGGAC 59.449 61.111 0.00 0.00 38.46 4.79
786 1164 2.159272 GAAACTGCTGTGCGGACGAC 62.159 60.000 1.60 0.00 38.46 4.34
809 1187 3.345808 GCCTGCACGACAGCGAAA 61.346 61.111 4.92 0.00 45.78 3.46
810 1188 2.551270 CCTGCACGACAGCGAAAC 59.449 61.111 4.92 0.00 45.78 2.78
813 1191 1.617755 CTGCACGACAGCGAAACGAT 61.618 55.000 0.00 0.00 40.19 3.73
821 1199 2.652662 CAGCGAAACGATGGCTAATC 57.347 50.000 1.47 0.00 41.68 1.75
822 1200 2.205074 CAGCGAAACGATGGCTAATCT 58.795 47.619 1.47 0.00 41.68 2.40
823 1201 3.381045 CAGCGAAACGATGGCTAATCTA 58.619 45.455 1.47 0.00 41.68 1.98
824 1202 3.990469 CAGCGAAACGATGGCTAATCTAT 59.010 43.478 1.47 0.00 41.68 1.98
825 1203 4.090642 CAGCGAAACGATGGCTAATCTATC 59.909 45.833 1.47 0.00 41.68 2.08
826 1204 3.368236 GCGAAACGATGGCTAATCTATCC 59.632 47.826 0.00 0.00 32.61 2.59
827 1205 3.608506 CGAAACGATGGCTAATCTATCCG 59.391 47.826 0.00 0.00 32.61 4.18
828 1206 4.557205 GAAACGATGGCTAATCTATCCGT 58.443 43.478 0.00 0.00 32.61 4.69
829 1207 4.602340 AACGATGGCTAATCTATCCGTT 57.398 40.909 0.00 0.00 32.61 4.44
830 1208 3.914312 ACGATGGCTAATCTATCCGTTG 58.086 45.455 0.00 0.00 32.61 4.10
831 1209 3.254060 CGATGGCTAATCTATCCGTTGG 58.746 50.000 0.00 0.00 32.61 3.77
832 1210 2.543777 TGGCTAATCTATCCGTTGGC 57.456 50.000 0.00 0.00 0.00 4.52
833 1211 1.809684 GGCTAATCTATCCGTTGGCC 58.190 55.000 0.00 0.00 43.24 5.36
834 1212 1.610886 GGCTAATCTATCCGTTGGCCC 60.611 57.143 0.00 0.00 43.68 5.80
837 1215 0.182775 AATCTATCCGTTGGCCCCAC 59.817 55.000 0.00 0.00 0.00 4.61
839 1217 0.912487 TCTATCCGTTGGCCCCACTT 60.912 55.000 0.00 0.00 0.00 3.16
840 1218 0.034477 CTATCCGTTGGCCCCACTTT 60.034 55.000 0.00 0.00 0.00 2.66
841 1219 1.210967 CTATCCGTTGGCCCCACTTTA 59.789 52.381 0.00 0.00 0.00 1.85
842 1220 0.034477 ATCCGTTGGCCCCACTTTAG 60.034 55.000 0.00 0.00 0.00 1.85
844 1222 0.958876 CCGTTGGCCCCACTTTAGTC 60.959 60.000 0.00 0.00 0.00 2.59
846 1224 1.613255 CGTTGGCCCCACTTTAGTCAT 60.613 52.381 0.00 0.00 0.00 3.06
848 1226 3.684413 CGTTGGCCCCACTTTAGTCATAT 60.684 47.826 0.00 0.00 0.00 1.78
849 1227 3.576078 TGGCCCCACTTTAGTCATATG 57.424 47.619 0.00 0.00 0.00 1.78
851 1229 2.422803 GGCCCCACTTTAGTCATATGCA 60.423 50.000 0.00 0.00 0.00 3.96
852 1230 3.490348 GCCCCACTTTAGTCATATGCAT 58.510 45.455 3.79 3.79 0.00 3.96
853 1231 3.254166 GCCCCACTTTAGTCATATGCATG 59.746 47.826 10.16 0.00 0.00 4.06
854 1232 3.822735 CCCCACTTTAGTCATATGCATGG 59.177 47.826 10.16 1.18 32.61 3.66
855 1233 4.446167 CCCCACTTTAGTCATATGCATGGA 60.446 45.833 10.16 3.95 32.61 3.41
857 1235 4.212004 CCACTTTAGTCATATGCATGGACG 59.788 45.833 20.72 12.79 32.61 4.79
858 1236 4.212004 CACTTTAGTCATATGCATGGACGG 59.788 45.833 20.72 15.92 32.61 4.79
859 1237 2.455674 TAGTCATATGCATGGACGGC 57.544 50.000 20.72 5.60 32.61 5.68
861 1239 1.141657 AGTCATATGCATGGACGGCTT 59.858 47.619 20.72 7.13 32.61 4.35
862 1240 1.265095 GTCATATGCATGGACGGCTTG 59.735 52.381 10.16 0.00 32.61 4.01
863 1241 1.140652 TCATATGCATGGACGGCTTGA 59.859 47.619 10.16 0.00 32.61 3.02
864 1242 2.156917 CATATGCATGGACGGCTTGAT 58.843 47.619 10.16 0.00 0.00 2.57
867 1245 2.121291 TGCATGGACGGCTTGATTTA 57.879 45.000 0.00 0.00 0.00 1.40
868 1246 2.016318 TGCATGGACGGCTTGATTTAG 58.984 47.619 0.00 0.00 0.00 1.85
869 1247 1.268743 GCATGGACGGCTTGATTTAGC 60.269 52.381 0.00 0.00 40.48 3.09
870 1248 2.292267 CATGGACGGCTTGATTTAGCT 58.708 47.619 0.00 0.00 40.99 3.32
876 1254 1.061131 CGGCTTGATTTAGCTGTCGTG 59.939 52.381 0.00 0.00 41.60 4.35
878 1256 1.464608 GCTTGATTTAGCTGTCGTGCA 59.535 47.619 0.00 0.00 38.15 4.57
879 1257 2.726066 GCTTGATTTAGCTGTCGTGCAC 60.726 50.000 6.82 6.82 38.15 4.57
880 1258 2.162319 TGATTTAGCTGTCGTGCACA 57.838 45.000 18.64 0.81 34.99 4.57
881 1259 2.488952 TGATTTAGCTGTCGTGCACAA 58.511 42.857 18.64 0.00 33.31 3.33
882 1260 2.875317 TGATTTAGCTGTCGTGCACAAA 59.125 40.909 18.64 8.16 33.31 2.83
884 1262 3.536158 TTTAGCTGTCGTGCACAAATC 57.464 42.857 18.64 4.23 33.31 2.17
885 1263 1.067693 TAGCTGTCGTGCACAAATCG 58.932 50.000 18.64 1.94 33.31 3.34
886 1264 0.880278 AGCTGTCGTGCACAAATCGT 60.880 50.000 18.64 0.00 33.31 3.73
887 1265 0.451135 GCTGTCGTGCACAAATCGTC 60.451 55.000 18.64 0.62 33.31 4.20
888 1266 0.858583 CTGTCGTGCACAAATCGTCA 59.141 50.000 18.64 5.57 33.31 4.35
889 1267 0.858583 TGTCGTGCACAAATCGTCAG 59.141 50.000 18.64 0.00 29.30 3.51
890 1268 0.451135 GTCGTGCACAAATCGTCAGC 60.451 55.000 18.64 0.00 0.00 4.26
891 1269 0.878086 TCGTGCACAAATCGTCAGCA 60.878 50.000 18.64 0.00 0.00 4.41
892 1270 0.041400 CGTGCACAAATCGTCAGCAA 60.041 50.000 18.64 0.00 36.91 3.91
893 1271 1.596709 CGTGCACAAATCGTCAGCAAA 60.597 47.619 18.64 0.00 36.91 3.68
894 1272 2.458951 GTGCACAAATCGTCAGCAAAA 58.541 42.857 13.17 0.00 36.91 2.44
897 1275 3.052036 GCACAAATCGTCAGCAAAACAT 58.948 40.909 0.00 0.00 0.00 2.71
898 1276 3.120121 GCACAAATCGTCAGCAAAACATC 59.880 43.478 0.00 0.00 0.00 3.06
900 1278 3.003275 ACAAATCGTCAGCAAAACATCGT 59.997 39.130 0.00 0.00 0.00 3.73
901 1279 3.455619 AATCGTCAGCAAAACATCGTC 57.544 42.857 0.00 0.00 0.00 4.20
904 1282 1.722751 CGTCAGCAAAACATCGTCTGC 60.723 52.381 0.00 0.00 34.96 4.26
905 1283 1.264020 GTCAGCAAAACATCGTCTGCA 59.736 47.619 0.00 0.00 37.26 4.41
906 1284 2.095567 GTCAGCAAAACATCGTCTGCAT 60.096 45.455 0.00 0.00 37.26 3.96
907 1285 3.125146 GTCAGCAAAACATCGTCTGCATA 59.875 43.478 0.00 0.00 37.26 3.14
908 1286 3.371898 TCAGCAAAACATCGTCTGCATAG 59.628 43.478 0.00 0.00 37.26 2.23
909 1287 2.096496 AGCAAAACATCGTCTGCATAGC 59.904 45.455 0.00 0.00 37.26 2.97
910 1288 2.159531 GCAAAACATCGTCTGCATAGCA 60.160 45.455 0.00 0.00 36.92 3.49
1000 2572 0.599204 GTCCGCTCACTTTTCCGTCA 60.599 55.000 0.00 0.00 0.00 4.35
1627 3523 0.912006 AGAGGGGAAAGGAGCAGACC 60.912 60.000 0.00 0.00 0.00 3.85
1643 3539 2.802816 CAGACCTGACTTTCAAGGTTCG 59.197 50.000 0.00 0.00 31.31 3.95
1735 3639 2.305607 CCGATGGGGGACAAAGGGA 61.306 63.158 0.00 0.00 0.00 4.20
1743 3647 1.203001 GGGGACAAAGGGACACATGAA 60.203 52.381 0.00 0.00 0.00 2.57
1835 3739 1.006805 CCATGGACGATCTCGAGGC 60.007 63.158 13.56 4.32 43.02 4.70
1864 3768 5.519722 ACAAAAGAGAAATGGTTAAGCACG 58.480 37.500 9.99 0.00 0.00 5.34
1919 3823 5.698741 AGGATGAAGATGGTATGTGAACA 57.301 39.130 0.00 0.00 0.00 3.18
2165 4069 1.070758 CGCCAACCTGGTATGAGCTAT 59.929 52.381 0.00 0.00 40.46 2.97
2434 4364 6.933521 ACATATGAATCAATGGTAGCTCACTC 59.066 38.462 10.38 0.00 0.00 3.51
2480 6799 7.177216 TGTCTGGCTTATGTGAAGAATGAAAAT 59.823 33.333 0.00 0.00 0.00 1.82
2801 9318 6.712095 AGATTGAGACAGCAACACAGATTTTA 59.288 34.615 0.00 0.00 0.00 1.52
2905 9427 4.035208 ACCTTTTCACAACGTCAACTCATC 59.965 41.667 0.00 0.00 0.00 2.92
2949 9471 1.497286 TGTAACTTTTGACTGCCCCCT 59.503 47.619 0.00 0.00 0.00 4.79
2950 9472 2.160205 GTAACTTTTGACTGCCCCCTC 58.840 52.381 0.00 0.00 0.00 4.30
2953 9475 3.204467 TTTTGACTGCCCCCTCCCG 62.204 63.158 0.00 0.00 0.00 5.14
2954 9476 4.974438 TTGACTGCCCCCTCCCGT 62.974 66.667 0.00 0.00 0.00 5.28
3064 9589 2.886512 GATTCAGGTTGCGCGCTTCG 62.887 60.000 33.29 15.77 42.12 3.79
3119 9644 2.930826 TGTTCCCAGTTCCTTCTGAC 57.069 50.000 0.00 0.00 37.61 3.51
3210 9735 7.500892 TCAAGCTTCTCTCTGTATCTACTAAGG 59.499 40.741 0.00 0.00 0.00 2.69
3233 9758 0.249114 GGATTCGTCTCTTCTCCCGC 60.249 60.000 0.00 0.00 0.00 6.13
3248 9773 2.821366 CGCCAGCTAGTTGCCCTG 60.821 66.667 0.17 0.00 44.23 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.163839 AGGAGAGATGCATTCATATAGGGC 59.836 45.833 0.00 0.00 31.96 5.19
2 3 5.954153 AGGAGAGATGCATTCATATAGGG 57.046 43.478 0.00 0.00 31.96 3.53
4 5 6.979817 GTGCTAGGAGAGATGCATTCATATAG 59.020 42.308 0.00 1.34 37.76 1.31
28 29 5.184892 AGCCTTTATCTTCTGTTCATGGT 57.815 39.130 0.00 0.00 0.00 3.55
44 45 1.884235 CACTCGTTTCTGGAGCCTTT 58.116 50.000 0.00 0.00 34.87 3.11
68 69 4.953579 ACCTGGATCTAGAGTTCTGACTTC 59.046 45.833 7.81 0.00 35.88 3.01
107 108 2.970974 GCGCTTTCTGTCACCTGGC 61.971 63.158 0.00 0.00 0.00 4.85
141 142 2.328099 GGCGGCAAGAAGTGGAGTG 61.328 63.158 3.07 0.00 0.00 3.51
143 144 2.747855 GGGCGGCAAGAAGTGGAG 60.748 66.667 12.47 0.00 0.00 3.86
146 147 2.594303 TGTGGGCGGCAAGAAGTG 60.594 61.111 12.47 0.00 0.00 3.16
157 158 1.045911 TCCCTTTTGGTTGTGTGGGC 61.046 55.000 0.00 0.00 38.10 5.36
201 202 1.978617 ATGGTTGGCTTTCTGGCGG 60.979 57.895 0.00 0.00 45.14 6.13
202 203 1.213537 CATGGTTGGCTTTCTGGCG 59.786 57.895 0.00 0.00 45.14 5.69
205 206 1.213537 CCGCATGGTTGGCTTTCTG 59.786 57.895 0.00 0.00 0.00 3.02
207 208 1.212751 GTCCGCATGGTTGGCTTTC 59.787 57.895 0.00 0.00 36.30 2.62
208 209 2.275380 GGTCCGCATGGTTGGCTTT 61.275 57.895 0.00 0.00 36.30 3.51
209 210 2.676471 GGTCCGCATGGTTGGCTT 60.676 61.111 0.00 0.00 36.30 4.35
211 212 2.755469 ATGGTCCGCATGGTTGGC 60.755 61.111 0.00 0.00 36.30 4.52
212 213 0.752743 ATGATGGTCCGCATGGTTGG 60.753 55.000 0.00 0.00 36.30 3.77
214 215 0.548031 AGATGATGGTCCGCATGGTT 59.452 50.000 2.04 0.00 36.30 3.67
215 216 0.179037 CAGATGATGGTCCGCATGGT 60.179 55.000 2.04 0.00 36.30 3.55
217 218 2.625375 CCAGATGATGGTCCGCATG 58.375 57.895 2.04 0.00 44.91 4.06
225 226 0.107017 GTGGTGACCCCAGATGATGG 60.107 60.000 0.00 0.00 46.45 3.51
226 227 0.107017 GGTGGTGACCCCAGATGATG 60.107 60.000 0.00 0.00 46.45 3.07
227 228 2.311287 GGTGGTGACCCCAGATGAT 58.689 57.895 0.00 0.00 46.45 2.45
241 242 1.450211 GACATGGATACCGGGGTGG 59.550 63.158 6.32 0.00 46.41 4.61
242 243 1.450211 GGACATGGATACCGGGGTG 59.550 63.158 6.32 0.00 0.00 4.61
243 244 2.138179 CGGACATGGATACCGGGGT 61.138 63.158 6.32 0.00 42.48 4.95
244 245 1.816863 CTCGGACATGGATACCGGGG 61.817 65.000 6.32 10.45 45.61 5.73
245 246 1.666011 CTCGGACATGGATACCGGG 59.334 63.158 6.32 13.17 45.61 5.73
248 249 1.068741 GGTGTCTCGGACATGGATACC 59.931 57.143 9.47 0.00 44.63 2.73
249 250 1.754803 TGGTGTCTCGGACATGGATAC 59.245 52.381 9.47 0.00 44.63 2.24
252 253 1.541310 GGTGGTGTCTCGGACATGGA 61.541 60.000 9.47 0.00 44.63 3.41
254 255 0.034756 TTGGTGGTGTCTCGGACATG 59.965 55.000 9.47 0.00 44.63 3.21
256 257 1.444250 GTTGGTGGTGTCTCGGACA 59.556 57.895 3.02 3.02 40.50 4.02
258 259 2.863346 CGGTTGGTGGTGTCTCGGA 61.863 63.158 0.00 0.00 0.00 4.55
259 260 2.357034 CGGTTGGTGGTGTCTCGG 60.357 66.667 0.00 0.00 0.00 4.63
260 261 3.041940 GCGGTTGGTGGTGTCTCG 61.042 66.667 0.00 0.00 0.00 4.04
261 262 2.668550 GGCGGTTGGTGGTGTCTC 60.669 66.667 0.00 0.00 0.00 3.36
263 264 4.572571 TGGGCGGTTGGTGGTGTC 62.573 66.667 0.00 0.00 0.00 3.67
264 265 4.887190 GTGGGCGGTTGGTGGTGT 62.887 66.667 0.00 0.00 0.00 4.16
265 266 4.885270 TGTGGGCGGTTGGTGGTG 62.885 66.667 0.00 0.00 0.00 4.17
266 267 3.860930 GATGTGGGCGGTTGGTGGT 62.861 63.158 0.00 0.00 0.00 4.16
267 268 3.061848 GATGTGGGCGGTTGGTGG 61.062 66.667 0.00 0.00 0.00 4.61
269 270 1.678635 CATGATGTGGGCGGTTGGT 60.679 57.895 0.00 0.00 0.00 3.67
270 271 2.417257 CCATGATGTGGGCGGTTGG 61.417 63.158 0.00 0.00 44.79 3.77
279 280 4.419502 TGGGTGCACCATGATGTG 57.580 55.556 35.78 0.00 46.80 3.21
288 289 3.289834 CTGCTGTGGTGGGTGCAC 61.290 66.667 8.80 8.80 0.00 4.57
289 290 4.584518 CCTGCTGTGGTGGGTGCA 62.585 66.667 0.00 0.00 0.00 4.57
290 291 4.269523 TCCTGCTGTGGTGGGTGC 62.270 66.667 0.00 0.00 0.00 5.01
291 292 2.033141 CTCCTGCTGTGGTGGGTG 59.967 66.667 0.00 0.00 0.00 4.61
293 294 2.930019 TCCTCCTGCTGTGGTGGG 60.930 66.667 10.52 6.08 40.23 4.61
297 298 1.902508 TCTTTACTCCTCCTGCTGTGG 59.097 52.381 0.00 0.00 0.00 4.17
298 299 2.672478 CGTCTTTACTCCTCCTGCTGTG 60.672 54.545 0.00 0.00 0.00 3.66
299 300 1.546476 CGTCTTTACTCCTCCTGCTGT 59.454 52.381 0.00 0.00 0.00 4.40
301 302 1.819903 GACGTCTTTACTCCTCCTGCT 59.180 52.381 8.70 0.00 0.00 4.24
304 305 2.725637 GGAGACGTCTTTACTCCTCCT 58.274 52.381 21.08 0.00 44.54 3.69
309 310 5.123805 AGTGAAAGGAGACGTCTTTACTC 57.876 43.478 21.08 14.36 34.92 2.59
310 311 4.022155 GGAGTGAAAGGAGACGTCTTTACT 60.022 45.833 21.08 15.23 34.92 2.24
311 312 4.022155 AGGAGTGAAAGGAGACGTCTTTAC 60.022 45.833 21.08 13.16 34.92 2.01
312 313 4.022242 CAGGAGTGAAAGGAGACGTCTTTA 60.022 45.833 21.08 0.00 34.92 1.85
314 315 2.297597 CAGGAGTGAAAGGAGACGTCTT 59.702 50.000 21.08 2.77 0.00 3.01
316 317 1.670380 GCAGGAGTGAAAGGAGACGTC 60.670 57.143 7.70 7.70 0.00 4.34
318 319 0.390472 GGCAGGAGTGAAAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
319 320 0.035915 GGGCAGGAGTGAAAGGAGAC 60.036 60.000 0.00 0.00 0.00 3.36
320 321 1.544825 CGGGCAGGAGTGAAAGGAGA 61.545 60.000 0.00 0.00 0.00 3.71
321 322 1.078848 CGGGCAGGAGTGAAAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
322 323 2.592993 CCGGGCAGGAGTGAAAGGA 61.593 63.158 0.00 0.00 45.00 3.36
323 324 2.045926 CCGGGCAGGAGTGAAAGG 60.046 66.667 0.00 0.00 45.00 3.11
324 325 2.747855 GCCGGGCAGGAGTGAAAG 60.748 66.667 15.62 0.00 45.00 2.62
327 328 3.785859 GATGCCGGGCAGGAGTGA 61.786 66.667 27.62 0.97 43.65 3.41
328 329 3.626996 TTGATGCCGGGCAGGAGTG 62.627 63.158 27.62 0.00 43.65 3.51
333 334 3.443045 GTGGTTGATGCCGGGCAG 61.443 66.667 27.62 0.00 43.65 4.85
337 338 4.402528 TCCCGTGGTTGATGCCGG 62.403 66.667 0.00 0.00 40.12 6.13
339 340 3.134127 GCTCCCGTGGTTGATGCC 61.134 66.667 0.00 0.00 0.00 4.40
340 341 3.134127 GGCTCCCGTGGTTGATGC 61.134 66.667 0.00 0.00 0.00 3.91
341 342 2.438434 GGGCTCCCGTGGTTGATG 60.438 66.667 0.00 0.00 0.00 3.07
342 343 2.534396 TTGGGCTCCCGTGGTTGAT 61.534 57.895 0.00 0.00 39.42 2.57
343 344 3.172106 TTGGGCTCCCGTGGTTGA 61.172 61.111 0.00 0.00 39.42 3.18
344 345 2.983592 GTTGGGCTCCCGTGGTTG 60.984 66.667 0.00 0.00 39.42 3.77
345 346 3.175710 AGTTGGGCTCCCGTGGTT 61.176 61.111 0.00 0.00 39.42 3.67
347 348 3.612247 CTGAGTTGGGCTCCCGTGG 62.612 68.421 0.00 0.00 43.48 4.94
349 350 1.613630 ATCTGAGTTGGGCTCCCGT 60.614 57.895 0.00 0.00 43.48 5.28
350 351 1.153289 CATCTGAGTTGGGCTCCCG 60.153 63.158 0.00 0.00 43.48 5.14
351 352 1.225704 CCATCTGAGTTGGGCTCCC 59.774 63.158 1.50 0.00 43.48 4.30
352 353 0.329596 AACCATCTGAGTTGGGCTCC 59.670 55.000 13.70 0.00 43.48 4.70
354 355 2.269940 ACTAACCATCTGAGTTGGGCT 58.730 47.619 13.70 3.58 38.64 5.19
355 356 2.749621 CAACTAACCATCTGAGTTGGGC 59.250 50.000 13.70 0.00 44.08 5.36
377 378 8.586273 GCGTCTACGTCTGTATTGTATTAAAAA 58.414 33.333 4.24 0.00 42.22 1.94
380 381 7.019774 AGCGTCTACGTCTGTATTGTATTAA 57.980 36.000 4.24 0.00 42.22 1.40
382 383 5.065602 TGAGCGTCTACGTCTGTATTGTATT 59.934 40.000 4.24 0.00 42.22 1.89
384 385 3.934579 TGAGCGTCTACGTCTGTATTGTA 59.065 43.478 4.24 0.00 42.22 2.41
386 387 3.400505 TGAGCGTCTACGTCTGTATTG 57.599 47.619 4.24 0.00 42.22 1.90
387 388 4.573607 TGTATGAGCGTCTACGTCTGTATT 59.426 41.667 4.24 0.00 42.22 1.89
388 389 4.025061 GTGTATGAGCGTCTACGTCTGTAT 60.025 45.833 4.24 2.74 42.22 2.29
389 390 3.308053 GTGTATGAGCGTCTACGTCTGTA 59.692 47.826 4.24 0.00 42.22 2.74
391 392 2.095372 TGTGTATGAGCGTCTACGTCTG 59.905 50.000 4.24 0.00 42.22 3.51
392 393 2.095532 GTGTGTATGAGCGTCTACGTCT 59.904 50.000 4.24 2.04 42.22 4.18
394 395 1.808343 TGTGTGTATGAGCGTCTACGT 59.192 47.619 4.24 0.00 42.22 3.57
397 398 5.767816 ATATGTGTGTGTATGAGCGTCTA 57.232 39.130 0.00 0.00 0.00 2.59
398 399 4.655762 ATATGTGTGTGTATGAGCGTCT 57.344 40.909 0.00 0.00 0.00 4.18
399 400 5.520632 AGTATATGTGTGTGTATGAGCGTC 58.479 41.667 0.00 0.00 0.00 5.19
421 422 6.657888 TGCGTGTGTGCATTCATATAATAAG 58.342 36.000 0.00 0.00 40.62 1.73
436 437 0.315886 TAGGGTAGTGTGCGTGTGTG 59.684 55.000 0.00 0.00 0.00 3.82
437 438 1.067142 CATAGGGTAGTGTGCGTGTGT 60.067 52.381 0.00 0.00 0.00 3.72
438 439 1.203758 TCATAGGGTAGTGTGCGTGTG 59.796 52.381 0.00 0.00 0.00 3.82
439 440 1.552578 TCATAGGGTAGTGTGCGTGT 58.447 50.000 0.00 0.00 0.00 4.49
440 441 2.665649 TTCATAGGGTAGTGTGCGTG 57.334 50.000 0.00 0.00 0.00 5.34
442 443 3.123804 GACATTCATAGGGTAGTGTGCG 58.876 50.000 0.00 0.00 0.00 5.34
443 444 3.134804 AGGACATTCATAGGGTAGTGTGC 59.865 47.826 0.00 0.00 0.00 4.57
444 445 5.833667 TCTAGGACATTCATAGGGTAGTGTG 59.166 44.000 0.00 0.00 32.14 3.82
447 448 6.282568 AGTCTAGGACATTCATAGGGTAGT 57.717 41.667 0.52 0.00 32.14 2.73
448 449 6.778069 TCAAGTCTAGGACATTCATAGGGTAG 59.222 42.308 0.52 0.00 32.14 3.18
450 451 5.364157 GTCAAGTCTAGGACATTCATAGGGT 59.636 44.000 0.52 0.00 32.14 4.34
451 452 5.363868 TGTCAAGTCTAGGACATTCATAGGG 59.636 44.000 3.75 0.00 39.00 3.53
452 453 6.471233 TGTCAAGTCTAGGACATTCATAGG 57.529 41.667 3.75 0.00 39.00 2.57
464 465 3.838120 TGAGCGTCAATGTCAAGTCTAG 58.162 45.455 0.00 0.00 0.00 2.43
465 466 3.934457 TGAGCGTCAATGTCAAGTCTA 57.066 42.857 0.00 0.00 0.00 2.59
468 469 6.500684 AAAATATGAGCGTCAATGTCAAGT 57.499 33.333 0.00 0.00 0.00 3.16
469 470 7.217636 CAGAAAAATATGAGCGTCAATGTCAAG 59.782 37.037 0.00 0.00 0.00 3.02
473 474 6.741992 TCAGAAAAATATGAGCGTCAATGT 57.258 33.333 0.00 0.00 0.00 2.71
499 500 2.686915 TCGCCGTAAAGGTTTGGAAAAA 59.313 40.909 0.00 0.00 43.70 1.94
500 501 2.295885 TCGCCGTAAAGGTTTGGAAAA 58.704 42.857 0.00 0.00 43.70 2.29
502 503 1.807742 CATCGCCGTAAAGGTTTGGAA 59.192 47.619 0.00 0.00 43.70 3.53
503 504 1.270947 ACATCGCCGTAAAGGTTTGGA 60.271 47.619 0.00 0.00 43.70 3.53
504 505 1.161843 ACATCGCCGTAAAGGTTTGG 58.838 50.000 0.00 0.00 43.70 3.28
506 507 2.774687 AGAACATCGCCGTAAAGGTTT 58.225 42.857 0.00 0.00 43.70 3.27
507 508 2.467566 AGAACATCGCCGTAAAGGTT 57.532 45.000 0.00 0.00 43.70 3.50
510 511 5.107220 ACACTAAAAGAACATCGCCGTAAAG 60.107 40.000 0.00 0.00 0.00 1.85
511 512 4.751098 ACACTAAAAGAACATCGCCGTAAA 59.249 37.500 0.00 0.00 0.00 2.01
513 514 3.676172 CACACTAAAAGAACATCGCCGTA 59.324 43.478 0.00 0.00 0.00 4.02
514 515 2.478894 CACACTAAAAGAACATCGCCGT 59.521 45.455 0.00 0.00 0.00 5.68
515 516 2.734606 TCACACTAAAAGAACATCGCCG 59.265 45.455 0.00 0.00 0.00 6.46
517 518 5.591643 TTCTCACACTAAAAGAACATCGC 57.408 39.130 0.00 0.00 0.00 4.58
528 529 6.487668 TCGACGGGAATATATTCTCACACTAA 59.512 38.462 22.30 2.93 37.11 2.24
529 530 5.999600 TCGACGGGAATATATTCTCACACTA 59.000 40.000 22.30 5.25 37.11 2.74
530 531 4.825634 TCGACGGGAATATATTCTCACACT 59.174 41.667 22.30 4.29 37.11 3.55
535 536 7.713750 TCCATAATCGACGGGAATATATTCTC 58.286 38.462 21.80 18.33 37.00 2.87
538 539 6.383147 ACCTCCATAATCGACGGGAATATATT 59.617 38.462 0.00 0.00 0.00 1.28
539 540 5.897824 ACCTCCATAATCGACGGGAATATAT 59.102 40.000 0.00 0.00 0.00 0.86
541 542 4.081642 CACCTCCATAATCGACGGGAATAT 60.082 45.833 0.00 0.00 0.00 1.28
542 543 3.257375 CACCTCCATAATCGACGGGAATA 59.743 47.826 0.00 0.00 0.00 1.75
546 547 0.600255 GCACCTCCATAATCGACGGG 60.600 60.000 0.00 0.00 0.00 5.28
547 548 0.104120 TGCACCTCCATAATCGACGG 59.896 55.000 0.00 0.00 0.00 4.79
548 549 1.794701 CATGCACCTCCATAATCGACG 59.205 52.381 0.00 0.00 0.00 5.12
549 550 2.545526 CACATGCACCTCCATAATCGAC 59.454 50.000 0.00 0.00 0.00 4.20
550 551 2.433970 TCACATGCACCTCCATAATCGA 59.566 45.455 0.00 0.00 0.00 3.59
552 553 4.214971 GTCATCACATGCACCTCCATAATC 59.785 45.833 0.00 0.00 0.00 1.75
553 554 4.139786 GTCATCACATGCACCTCCATAAT 58.860 43.478 0.00 0.00 0.00 1.28
556 557 1.562942 AGTCATCACATGCACCTCCAT 59.437 47.619 0.00 0.00 0.00 3.41
558 559 2.012673 GAAGTCATCACATGCACCTCC 58.987 52.381 0.00 0.00 0.00 4.30
560 561 1.002430 ACGAAGTCATCACATGCACCT 59.998 47.619 0.00 0.00 29.74 4.00
561 562 1.442769 ACGAAGTCATCACATGCACC 58.557 50.000 0.00 0.00 29.74 5.01
576 577 4.733815 GCACATCCTCTTAAGATCGACGAA 60.734 45.833 5.44 0.00 0.00 3.85
577 578 3.243101 GCACATCCTCTTAAGATCGACGA 60.243 47.826 5.44 0.00 0.00 4.20
584 585 0.178068 GCGGGCACATCCTCTTAAGA 59.822 55.000 4.81 4.81 34.39 2.10
585 586 0.179000 AGCGGGCACATCCTCTTAAG 59.821 55.000 0.00 0.00 34.39 1.85
587 588 0.975556 TGAGCGGGCACATCCTCTTA 60.976 55.000 0.00 0.00 34.39 2.10
588 589 1.630126 ATGAGCGGGCACATCCTCTT 61.630 55.000 0.00 0.00 34.39 2.85
589 590 1.630126 AATGAGCGGGCACATCCTCT 61.630 55.000 4.11 0.00 34.39 3.69
590 591 1.153086 AATGAGCGGGCACATCCTC 60.153 57.895 4.11 0.00 34.39 3.71
593 594 1.064654 GAAAGAATGAGCGGGCACATC 59.935 52.381 4.11 0.00 0.00 3.06
596 597 1.425428 CGAAAGAATGAGCGGGCAC 59.575 57.895 0.00 0.00 0.00 5.01
599 600 0.175760 TCTCCGAAAGAATGAGCGGG 59.824 55.000 0.00 0.00 43.71 6.13
600 601 1.863454 CATCTCCGAAAGAATGAGCGG 59.137 52.381 0.00 0.00 44.83 5.52
601 602 1.260033 GCATCTCCGAAAGAATGAGCG 59.740 52.381 0.00 0.00 37.61 5.03
602 603 2.543430 GAGCATCTCCGAAAGAATGAGC 59.457 50.000 0.00 0.00 37.61 4.26
605 606 5.536260 TCTATGAGCATCTCCGAAAGAATG 58.464 41.667 0.00 0.00 37.61 2.67
606 607 5.304101 ACTCTATGAGCATCTCCGAAAGAAT 59.696 40.000 0.00 0.00 33.21 2.40
608 609 4.211125 ACTCTATGAGCATCTCCGAAAGA 58.789 43.478 0.00 0.00 33.73 2.52
609 610 4.582701 ACTCTATGAGCATCTCCGAAAG 57.417 45.455 0.00 0.00 34.92 2.62
610 611 5.828328 TCTAACTCTATGAGCATCTCCGAAA 59.172 40.000 0.00 0.00 34.92 3.46
611 612 5.377478 TCTAACTCTATGAGCATCTCCGAA 58.623 41.667 0.00 0.00 34.92 4.30
613 614 4.759693 ACTCTAACTCTATGAGCATCTCCG 59.240 45.833 0.00 0.00 34.92 4.63
614 615 5.534654 ACACTCTAACTCTATGAGCATCTCC 59.465 44.000 0.00 0.00 34.92 3.71
615 616 6.437928 CACACTCTAACTCTATGAGCATCTC 58.562 44.000 0.00 0.00 34.92 2.75
616 617 5.221224 GCACACTCTAACTCTATGAGCATCT 60.221 44.000 0.00 0.00 34.92 2.90
617 618 4.981674 GCACACTCTAACTCTATGAGCATC 59.018 45.833 0.00 0.00 32.04 3.91
618 619 4.403752 TGCACACTCTAACTCTATGAGCAT 59.596 41.667 0.00 0.00 32.97 3.79
621 622 5.747675 CACATGCACACTCTAACTCTATGAG 59.252 44.000 0.00 0.00 35.52 2.90
622 623 5.185828 ACACATGCACACTCTAACTCTATGA 59.814 40.000 0.00 0.00 0.00 2.15
623 624 5.414360 ACACATGCACACTCTAACTCTATG 58.586 41.667 0.00 0.00 0.00 2.23
624 625 5.667539 ACACATGCACACTCTAACTCTAT 57.332 39.130 0.00 0.00 0.00 1.98
628 629 4.600692 TGTACACATGCACACTCTAACT 57.399 40.909 0.00 0.00 0.00 2.24
631 632 9.660180 TTTATAAATGTACACATGCACACTCTA 57.340 29.630 0.00 0.00 36.56 2.43
633 634 8.664798 TCTTTATAAATGTACACATGCACACTC 58.335 33.333 0.00 0.00 36.56 3.51
634 635 8.560355 TCTTTATAAATGTACACATGCACACT 57.440 30.769 0.00 0.00 36.56 3.55
747 1125 1.393539 CGGTTTTGTGATGAGGTAGCG 59.606 52.381 0.00 0.00 0.00 4.26
749 1127 4.755123 AGTTTCGGTTTTGTGATGAGGTAG 59.245 41.667 0.00 0.00 0.00 3.18
751 1129 3.315191 CAGTTTCGGTTTTGTGATGAGGT 59.685 43.478 0.00 0.00 0.00 3.85
752 1130 3.853307 GCAGTTTCGGTTTTGTGATGAGG 60.853 47.826 0.00 0.00 0.00 3.86
753 1131 3.003689 AGCAGTTTCGGTTTTGTGATGAG 59.996 43.478 0.00 0.00 0.00 2.90
754 1132 2.948979 AGCAGTTTCGGTTTTGTGATGA 59.051 40.909 0.00 0.00 0.00 2.92
756 1134 2.687935 ACAGCAGTTTCGGTTTTGTGAT 59.312 40.909 0.00 0.00 0.00 3.06
758 1136 2.184448 CACAGCAGTTTCGGTTTTGTG 58.816 47.619 0.00 0.00 0.00 3.33
759 1137 1.469079 GCACAGCAGTTTCGGTTTTGT 60.469 47.619 0.00 0.00 0.00 2.83
760 1138 1.199624 GCACAGCAGTTTCGGTTTTG 58.800 50.000 0.00 0.00 0.00 2.44
769 1147 2.661866 GTCGTCCGCACAGCAGTT 60.662 61.111 0.00 0.00 0.00 3.16
792 1170 3.345808 TTTCGCTGTCGTGCAGGC 61.346 61.111 0.35 0.00 45.14 4.85
793 1171 2.551270 GTTTCGCTGTCGTGCAGG 59.449 61.111 0.00 0.00 45.14 4.85
795 1173 1.663388 ATCGTTTCGCTGTCGTGCA 60.663 52.632 0.00 0.00 36.96 4.57
796 1174 1.225475 CATCGTTTCGCTGTCGTGC 60.225 57.895 0.00 0.00 36.96 5.34
797 1175 1.416049 CCATCGTTTCGCTGTCGTG 59.584 57.895 0.00 0.00 36.96 4.35
798 1176 2.380410 GCCATCGTTTCGCTGTCGT 61.380 57.895 0.00 0.00 36.96 4.34
799 1177 0.800683 TAGCCATCGTTTCGCTGTCG 60.801 55.000 0.00 0.00 34.03 4.35
801 1179 1.933853 GATTAGCCATCGTTTCGCTGT 59.066 47.619 0.00 0.00 34.03 4.40
802 1180 2.205074 AGATTAGCCATCGTTTCGCTG 58.795 47.619 0.00 0.00 36.93 5.18
803 1181 2.604046 AGATTAGCCATCGTTTCGCT 57.396 45.000 0.00 0.00 36.93 4.93
804 1182 3.368236 GGATAGATTAGCCATCGTTTCGC 59.632 47.826 0.00 0.00 36.93 4.70
805 1183 3.608506 CGGATAGATTAGCCATCGTTTCG 59.391 47.826 0.00 0.00 36.93 3.46
807 1185 4.602340 ACGGATAGATTAGCCATCGTTT 57.398 40.909 0.00 0.00 36.93 3.60
809 1187 3.306088 CCAACGGATAGATTAGCCATCGT 60.306 47.826 0.00 0.00 36.93 3.73
810 1188 3.254060 CCAACGGATAGATTAGCCATCG 58.746 50.000 0.00 0.00 36.93 3.84
813 1191 1.071699 GGCCAACGGATAGATTAGCCA 59.928 52.381 0.00 0.00 39.01 4.75
814 1192 1.610886 GGGCCAACGGATAGATTAGCC 60.611 57.143 4.39 0.00 38.45 3.93
815 1193 1.610886 GGGGCCAACGGATAGATTAGC 60.611 57.143 4.39 0.00 0.00 3.09
816 1194 1.697432 TGGGGCCAACGGATAGATTAG 59.303 52.381 4.39 0.00 0.00 1.73
817 1195 1.418637 GTGGGGCCAACGGATAGATTA 59.581 52.381 4.39 0.00 0.00 1.75
818 1196 0.182775 GTGGGGCCAACGGATAGATT 59.817 55.000 4.39 0.00 0.00 2.40
819 1197 0.694444 AGTGGGGCCAACGGATAGAT 60.694 55.000 4.39 0.00 0.00 1.98
820 1198 0.912487 AAGTGGGGCCAACGGATAGA 60.912 55.000 4.39 0.00 0.00 1.98
821 1199 0.034477 AAAGTGGGGCCAACGGATAG 60.034 55.000 4.39 0.00 0.00 2.08
822 1200 1.210967 CTAAAGTGGGGCCAACGGATA 59.789 52.381 4.39 0.00 0.00 2.59
823 1201 0.034477 CTAAAGTGGGGCCAACGGAT 60.034 55.000 4.39 0.00 0.00 4.18
824 1202 1.377229 CTAAAGTGGGGCCAACGGA 59.623 57.895 4.39 0.00 0.00 4.69
825 1203 0.958876 GACTAAAGTGGGGCCAACGG 60.959 60.000 4.39 0.24 0.00 4.44
826 1204 0.250553 TGACTAAAGTGGGGCCAACG 60.251 55.000 4.39 0.00 0.00 4.10
827 1205 2.215942 ATGACTAAAGTGGGGCCAAC 57.784 50.000 1.60 1.60 0.00 3.77
828 1206 3.897239 CATATGACTAAAGTGGGGCCAA 58.103 45.455 4.39 0.00 0.00 4.52
829 1207 2.422803 GCATATGACTAAAGTGGGGCCA 60.423 50.000 6.97 0.00 0.00 5.36
830 1208 2.230660 GCATATGACTAAAGTGGGGCC 58.769 52.381 6.97 0.00 0.00 5.80
831 1209 2.930950 TGCATATGACTAAAGTGGGGC 58.069 47.619 6.97 0.00 0.00 5.80
832 1210 3.822735 CCATGCATATGACTAAAGTGGGG 59.177 47.826 6.97 0.00 36.36 4.96
833 1211 4.516698 GTCCATGCATATGACTAAAGTGGG 59.483 45.833 17.13 3.51 36.36 4.61
834 1212 4.212004 CGTCCATGCATATGACTAAAGTGG 59.788 45.833 20.22 7.42 36.36 4.00
837 1215 3.187227 GCCGTCCATGCATATGACTAAAG 59.813 47.826 20.22 11.07 36.36 1.85
839 1217 2.368548 AGCCGTCCATGCATATGACTAA 59.631 45.455 20.22 0.00 36.36 2.24
840 1218 1.970640 AGCCGTCCATGCATATGACTA 59.029 47.619 20.22 0.00 36.36 2.59
841 1219 0.761187 AGCCGTCCATGCATATGACT 59.239 50.000 20.22 0.39 36.36 3.41
842 1220 1.265095 CAAGCCGTCCATGCATATGAC 59.735 52.381 6.97 15.27 36.36 3.06
844 1222 1.596603 TCAAGCCGTCCATGCATATG 58.403 50.000 0.00 0.00 0.00 1.78
846 1224 2.346766 AATCAAGCCGTCCATGCATA 57.653 45.000 0.00 0.00 0.00 3.14
848 1226 2.016318 CTAAATCAAGCCGTCCATGCA 58.984 47.619 0.00 0.00 0.00 3.96
849 1227 1.268743 GCTAAATCAAGCCGTCCATGC 60.269 52.381 0.00 0.00 36.45 4.06
851 1229 2.292267 CAGCTAAATCAAGCCGTCCAT 58.708 47.619 0.00 0.00 43.86 3.41
852 1230 1.003118 ACAGCTAAATCAAGCCGTCCA 59.997 47.619 0.00 0.00 43.86 4.02
853 1231 1.666189 GACAGCTAAATCAAGCCGTCC 59.334 52.381 1.61 0.00 41.87 4.79
854 1232 1.324736 CGACAGCTAAATCAAGCCGTC 59.675 52.381 2.79 2.79 43.46 4.79
855 1233 1.337823 ACGACAGCTAAATCAAGCCGT 60.338 47.619 0.00 0.00 43.86 5.68
857 1235 1.202076 GCACGACAGCTAAATCAAGCC 60.202 52.381 0.00 0.00 43.86 4.35
858 1236 1.464608 TGCACGACAGCTAAATCAAGC 59.535 47.619 0.00 0.00 43.11 4.01
859 1237 2.480037 TGTGCACGACAGCTAAATCAAG 59.520 45.455 13.13 0.00 34.99 3.02
861 1239 2.162319 TGTGCACGACAGCTAAATCA 57.838 45.000 13.13 0.00 34.99 2.57
862 1240 3.536158 TTTGTGCACGACAGCTAAATC 57.464 42.857 13.13 0.00 35.44 2.17
863 1241 3.424829 CGATTTGTGCACGACAGCTAAAT 60.425 43.478 13.13 10.32 35.44 1.40
864 1242 2.096466 CGATTTGTGCACGACAGCTAAA 60.096 45.455 13.13 5.54 35.44 1.85
867 1245 0.880278 ACGATTTGTGCACGACAGCT 60.880 50.000 13.13 0.00 35.44 4.24
868 1246 0.451135 GACGATTTGTGCACGACAGC 60.451 55.000 13.13 3.62 35.44 4.40
869 1247 0.858583 TGACGATTTGTGCACGACAG 59.141 50.000 13.13 6.71 35.44 3.51
870 1248 0.858583 CTGACGATTTGTGCACGACA 59.141 50.000 13.13 5.53 0.00 4.35
871 1249 0.451135 GCTGACGATTTGTGCACGAC 60.451 55.000 13.13 0.54 0.00 4.34
872 1250 0.878086 TGCTGACGATTTGTGCACGA 60.878 50.000 13.13 7.71 0.00 4.35
873 1251 0.041400 TTGCTGACGATTTGTGCACG 60.041 50.000 13.13 1.70 30.04 5.34
876 1254 2.458951 TGTTTTGCTGACGATTTGTGC 58.541 42.857 0.00 0.00 0.00 4.57
878 1256 3.003275 ACGATGTTTTGCTGACGATTTGT 59.997 39.130 0.00 0.00 0.00 2.83
879 1257 3.554524 ACGATGTTTTGCTGACGATTTG 58.445 40.909 0.00 0.00 0.00 2.32
880 1258 3.498397 AGACGATGTTTTGCTGACGATTT 59.502 39.130 0.00 0.00 0.00 2.17
881 1259 3.067106 AGACGATGTTTTGCTGACGATT 58.933 40.909 0.00 0.00 0.00 3.34
882 1260 2.413112 CAGACGATGTTTTGCTGACGAT 59.587 45.455 0.00 0.00 0.00 3.73
884 1262 1.722751 GCAGACGATGTTTTGCTGACG 60.723 52.381 0.00 0.00 33.88 4.35
885 1263 1.264020 TGCAGACGATGTTTTGCTGAC 59.736 47.619 0.00 0.00 37.45 3.51
886 1264 1.592064 TGCAGACGATGTTTTGCTGA 58.408 45.000 0.00 0.00 37.45 4.26
887 1265 2.624316 ATGCAGACGATGTTTTGCTG 57.376 45.000 0.00 0.00 37.45 4.41
888 1266 2.096496 GCTATGCAGACGATGTTTTGCT 59.904 45.455 0.00 0.00 37.45 3.91
889 1267 2.159531 TGCTATGCAGACGATGTTTTGC 60.160 45.455 0.00 0.00 33.32 3.68
890 1268 3.745332 TGCTATGCAGACGATGTTTTG 57.255 42.857 0.00 0.00 33.32 2.44
904 1282 1.362768 TTTGTGAGAGCGCTGCTATG 58.637 50.000 18.48 0.00 39.88 2.23
905 1283 1.734465 GTTTTGTGAGAGCGCTGCTAT 59.266 47.619 18.48 0.00 39.88 2.97
906 1284 1.148310 GTTTTGTGAGAGCGCTGCTA 58.852 50.000 18.48 0.00 39.88 3.49
907 1285 0.533755 AGTTTTGTGAGAGCGCTGCT 60.534 50.000 18.48 12.41 43.88 4.24
908 1286 0.308993 AAGTTTTGTGAGAGCGCTGC 59.691 50.000 18.48 7.40 0.00 5.25
909 1287 3.248602 AGTTAAGTTTTGTGAGAGCGCTG 59.751 43.478 18.48 0.00 0.00 5.18
910 1288 3.248602 CAGTTAAGTTTTGTGAGAGCGCT 59.751 43.478 11.27 11.27 0.00 5.92
912 1290 4.318831 GGACAGTTAAGTTTTGTGAGAGCG 60.319 45.833 0.00 0.00 0.00 5.03
913 1291 4.023963 GGGACAGTTAAGTTTTGTGAGAGC 60.024 45.833 0.00 0.00 0.00 4.09
914 1292 5.368989 AGGGACAGTTAAGTTTTGTGAGAG 58.631 41.667 0.00 0.00 0.00 3.20
915 1293 5.367945 AGGGACAGTTAAGTTTTGTGAGA 57.632 39.130 0.00 0.00 0.00 3.27
916 1294 5.357032 ACAAGGGACAGTTAAGTTTTGTGAG 59.643 40.000 0.00 0.00 0.00 3.51
1627 3523 2.417719 CCCTCGAACCTTGAAAGTCAG 58.582 52.381 0.00 0.00 0.00 3.51
1743 3647 6.016527 CAGGCTGCATGTCATCAATAGTTATT 60.017 38.462 6.07 0.00 0.00 1.40
1835 3739 7.540055 GCTTAACCATTTCTCTTTTGTCATCAG 59.460 37.037 0.00 0.00 0.00 2.90
1864 3768 3.600388 ACTTATCTGCAGCCACAAGTAC 58.400 45.455 9.47 0.00 0.00 2.73
1919 3823 5.942236 ACATCAAGACTCTTGCATAACATGT 59.058 36.000 13.24 12.82 0.00 3.21
1924 3828 6.466812 TCTCAACATCAAGACTCTTGCATAA 58.533 36.000 13.24 0.00 0.00 1.90
2165 4069 7.177832 TCTATCAGAACGGAAGGATAAACAA 57.822 36.000 0.00 0.00 0.00 2.83
2434 4364 5.008316 AGACACTAAAGTAAAAAGGGCAACG 59.992 40.000 0.00 0.00 37.60 4.10
2480 6799 7.884877 ACATGTAAAACAGATCATCTCAAAGGA 59.115 33.333 0.00 0.00 0.00 3.36
2627 9141 9.851686 ATTCATGTATAGTATCTTTCCAAGCAA 57.148 29.630 0.00 0.00 0.00 3.91
2628 9142 9.851686 AATTCATGTATAGTATCTTTCCAAGCA 57.148 29.630 0.00 0.00 0.00 3.91
2675 9191 8.697846 ATTCATGAACAGAAAACTATTGCATG 57.302 30.769 11.07 0.00 33.74 4.06
2905 9427 4.700213 AGACGATGTGAAAATTTACAGGGG 59.300 41.667 0.00 0.00 0.00 4.79
2953 9475 1.019278 ACCCACATCGCACGATTCAC 61.019 55.000 2.13 0.00 31.62 3.18
2954 9476 0.321210 AACCCACATCGCACGATTCA 60.321 50.000 2.13 0.00 31.62 2.57
2955 9477 0.802494 AAACCCACATCGCACGATTC 59.198 50.000 2.13 0.00 31.62 2.52
3064 9589 1.642952 CGCTTCTTCCCAGCTTCTGC 61.643 60.000 0.00 0.00 34.88 4.26
3119 9644 1.197721 CTTCTACACCGGCTGCAAAAG 59.802 52.381 0.00 0.00 0.00 2.27
3210 9735 0.249114 GAGAAGAGACGAATCCCCGC 60.249 60.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.