Multiple sequence alignment - TraesCS5D01G047200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G047200 | chr5D | 100.000 | 2846 | 0 | 0 | 1 | 2846 | 45484076 | 45486921 | 0.000000e+00 | 5256.0 |
1 | TraesCS5D01G047200 | chr5D | 82.475 | 1301 | 182 | 20 | 742 | 1999 | 45492029 | 45493326 | 0.000000e+00 | 1098.0 |
2 | TraesCS5D01G047200 | chr5D | 81.030 | 854 | 126 | 26 | 1536 | 2374 | 45499462 | 45500294 | 0.000000e+00 | 647.0 |
3 | TraesCS5D01G047200 | chr5A | 91.765 | 2380 | 127 | 21 | 423 | 2761 | 36362406 | 36364757 | 0.000000e+00 | 3245.0 |
4 | TraesCS5D01G047200 | chr5A | 87.241 | 290 | 33 | 3 | 742 | 1030 | 36368181 | 36368467 | 7.600000e-86 | 327.0 |
5 | TraesCS5D01G047200 | chr5A | 89.764 | 254 | 23 | 1 | 1654 | 1904 | 36368468 | 36368721 | 3.540000e-84 | 322.0 |
6 | TraesCS5D01G047200 | chr5A | 93.506 | 77 | 4 | 1 | 2761 | 2836 | 36364798 | 36364874 | 2.320000e-21 | 113.0 |
7 | TraesCS5D01G047200 | chr5A | 93.617 | 47 | 1 | 2 | 232 | 276 | 605241770 | 605241816 | 5.090000e-08 | 69.4 |
8 | TraesCS5D01G047200 | chr5B | 92.199 | 1346 | 76 | 12 | 325 | 1651 | 45534281 | 45535616 | 0.000000e+00 | 1877.0 |
9 | TraesCS5D01G047200 | chr5B | 92.472 | 890 | 50 | 6 | 1645 | 2525 | 45536361 | 45537242 | 0.000000e+00 | 1256.0 |
10 | TraesCS5D01G047200 | chr5B | 82.507 | 1069 | 139 | 16 | 741 | 1769 | 45540969 | 45542029 | 0.000000e+00 | 894.0 |
11 | TraesCS5D01G047200 | chr5B | 77.741 | 602 | 95 | 28 | 1793 | 2376 | 45555554 | 45556134 | 1.630000e-87 | 333.0 |
12 | TraesCS5D01G047200 | chr5B | 87.097 | 279 | 26 | 7 | 2566 | 2834 | 45537239 | 45537517 | 9.900000e-80 | 307.0 |
13 | TraesCS5D01G047200 | chr3D | 97.561 | 41 | 0 | 1 | 237 | 276 | 377201863 | 377201903 | 5.090000e-08 | 69.4 |
14 | TraesCS5D01G047200 | chr3A | 93.478 | 46 | 2 | 1 | 232 | 276 | 112940992 | 112940947 | 1.830000e-07 | 67.6 |
15 | TraesCS5D01G047200 | chr7A | 97.436 | 39 | 0 | 1 | 239 | 276 | 187432441 | 187432479 | 6.580000e-07 | 65.8 |
16 | TraesCS5D01G047200 | chr6D | 97.436 | 39 | 0 | 1 | 239 | 276 | 82969862 | 82969900 | 6.580000e-07 | 65.8 |
17 | TraesCS5D01G047200 | chr6D | 97.436 | 39 | 0 | 1 | 239 | 276 | 410152903 | 410152941 | 6.580000e-07 | 65.8 |
18 | TraesCS5D01G047200 | chr6A | 97.436 | 39 | 0 | 1 | 239 | 276 | 99787439 | 99787477 | 6.580000e-07 | 65.8 |
19 | TraesCS5D01G047200 | chr1D | 97.436 | 39 | 0 | 1 | 239 | 276 | 303314694 | 303314732 | 6.580000e-07 | 65.8 |
20 | TraesCS5D01G047200 | chr1D | 91.489 | 47 | 3 | 1 | 230 | 275 | 238320621 | 238320667 | 2.370000e-06 | 63.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G047200 | chr5D | 45484076 | 45486921 | 2845 | False | 5256.00 | 5256 | 100.00000 | 1 | 2846 | 1 | chr5D.!!$F1 | 2845 |
1 | TraesCS5D01G047200 | chr5D | 45492029 | 45493326 | 1297 | False | 1098.00 | 1098 | 82.47500 | 742 | 1999 | 1 | chr5D.!!$F2 | 1257 |
2 | TraesCS5D01G047200 | chr5D | 45499462 | 45500294 | 832 | False | 647.00 | 647 | 81.03000 | 1536 | 2374 | 1 | chr5D.!!$F3 | 838 |
3 | TraesCS5D01G047200 | chr5A | 36362406 | 36368721 | 6315 | False | 1001.75 | 3245 | 90.56900 | 423 | 2836 | 4 | chr5A.!!$F2 | 2413 |
4 | TraesCS5D01G047200 | chr5B | 45534281 | 45542029 | 7748 | False | 1083.50 | 1877 | 88.56875 | 325 | 2834 | 4 | chr5B.!!$F2 | 2509 |
5 | TraesCS5D01G047200 | chr5B | 45555554 | 45556134 | 580 | False | 333.00 | 333 | 77.74100 | 1793 | 2376 | 1 | chr5B.!!$F1 | 583 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
252 | 253 | 0.106116 | ACTGATACTCCCTCCGTCCC | 60.106 | 60.0 | 0.0 | 0.0 | 0.0 | 4.46 | F |
253 | 254 | 0.106167 | CTGATACTCCCTCCGTCCCA | 60.106 | 60.0 | 0.0 | 0.0 | 0.0 | 4.37 | F |
258 | 259 | 0.328258 | ACTCCCTCCGTCCCAAAATG | 59.672 | 55.0 | 0.0 | 0.0 | 0.0 | 2.32 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1489 | 1518 | 0.033781 | TTGCTGAATGGTGCTTTGCC | 59.966 | 50.0 | 0.00 | 0.0 | 0.0 | 4.52 | R |
1569 | 1634 | 0.179018 | GTTGGCTCTCCTGTTGTGGT | 60.179 | 55.0 | 0.00 | 0.0 | 0.0 | 4.16 | R |
2000 | 2831 | 0.730840 | CGGACCGACAATAAAAGCCC | 59.269 | 55.0 | 8.64 | 0.0 | 0.0 | 5.19 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 3.810896 | GGCGCGGCTAGGGTTTTG | 61.811 | 66.667 | 27.05 | 0.00 | 34.93 | 2.44 |
23 | 24 | 2.744709 | GCGCGGCTAGGGTTTTGA | 60.745 | 61.111 | 8.83 | 0.00 | 34.93 | 2.69 |
24 | 25 | 3.035576 | GCGCGGCTAGGGTTTTGAC | 62.036 | 63.158 | 8.83 | 0.00 | 34.93 | 3.18 |
25 | 26 | 1.375523 | CGCGGCTAGGGTTTTGACT | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
26 | 27 | 0.953960 | CGCGGCTAGGGTTTTGACTT | 60.954 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
27 | 28 | 0.521735 | GCGGCTAGGGTTTTGACTTG | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
28 | 29 | 1.165270 | CGGCTAGGGTTTTGACTTGG | 58.835 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
29 | 30 | 1.545841 | GGCTAGGGTTTTGACTTGGG | 58.454 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
30 | 31 | 1.545841 | GCTAGGGTTTTGACTTGGGG | 58.454 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
31 | 32 | 1.545841 | CTAGGGTTTTGACTTGGGGC | 58.454 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
32 | 33 | 1.075536 | CTAGGGTTTTGACTTGGGGCT | 59.924 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
33 | 34 | 0.469892 | AGGGTTTTGACTTGGGGCTG | 60.470 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
34 | 35 | 1.471829 | GGGTTTTGACTTGGGGCTGG | 61.472 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
35 | 36 | 0.759060 | GGTTTTGACTTGGGGCTGGT | 60.759 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
36 | 37 | 1.119684 | GTTTTGACTTGGGGCTGGTT | 58.880 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
37 | 38 | 1.484653 | GTTTTGACTTGGGGCTGGTTT | 59.515 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
38 | 39 | 1.408969 | TTTGACTTGGGGCTGGTTTC | 58.591 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
39 | 40 | 0.555769 | TTGACTTGGGGCTGGTTTCT | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
40 | 41 | 0.555769 | TGACTTGGGGCTGGTTTCTT | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
41 | 42 | 1.063266 | TGACTTGGGGCTGGTTTCTTT | 60.063 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
42 | 43 | 2.175931 | TGACTTGGGGCTGGTTTCTTTA | 59.824 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
43 | 44 | 3.181423 | TGACTTGGGGCTGGTTTCTTTAT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
44 | 45 | 3.832490 | GACTTGGGGCTGGTTTCTTTATT | 59.168 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
45 | 46 | 3.832490 | ACTTGGGGCTGGTTTCTTTATTC | 59.168 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
46 | 47 | 2.442413 | TGGGGCTGGTTTCTTTATTCG | 58.558 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
47 | 48 | 1.749063 | GGGGCTGGTTTCTTTATTCGG | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
48 | 49 | 1.749063 | GGGCTGGTTTCTTTATTCGGG | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
49 | 50 | 1.749063 | GGCTGGTTTCTTTATTCGGGG | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
50 | 51 | 2.619590 | GGCTGGTTTCTTTATTCGGGGA | 60.620 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
51 | 52 | 2.683362 | GCTGGTTTCTTTATTCGGGGAG | 59.317 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
52 | 53 | 3.621461 | GCTGGTTTCTTTATTCGGGGAGA | 60.621 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
53 | 54 | 4.192317 | CTGGTTTCTTTATTCGGGGAGAG | 58.808 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
54 | 55 | 3.054655 | TGGTTTCTTTATTCGGGGAGAGG | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
55 | 56 | 3.199289 | GGTTTCTTTATTCGGGGAGAGGA | 59.801 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
56 | 57 | 4.443621 | GTTTCTTTATTCGGGGAGAGGAG | 58.556 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
57 | 58 | 3.682592 | TCTTTATTCGGGGAGAGGAGA | 57.317 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
58 | 59 | 3.297736 | TCTTTATTCGGGGAGAGGAGAC | 58.702 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
59 | 60 | 1.688772 | TTATTCGGGGAGAGGAGACG | 58.311 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
60 | 61 | 0.549950 | TATTCGGGGAGAGGAGACGT | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
61 | 62 | 0.549950 | ATTCGGGGAGAGGAGACGTA | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 3.57 |
62 | 63 | 0.393537 | TTCGGGGAGAGGAGACGTAC | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
63 | 64 | 1.077930 | CGGGGAGAGGAGACGTACA | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
64 | 65 | 0.465824 | CGGGGAGAGGAGACGTACAT | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 2.29 |
65 | 66 | 1.202734 | CGGGGAGAGGAGACGTACATA | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 2.29 |
66 | 67 | 2.228925 | GGGGAGAGGAGACGTACATAC | 58.771 | 57.143 | 0.00 | 0.00 | 0.00 | 2.39 |
67 | 68 | 2.422519 | GGGGAGAGGAGACGTACATACA | 60.423 | 54.545 | 0.00 | 0.00 | 0.00 | 2.29 |
68 | 69 | 3.488363 | GGGAGAGGAGACGTACATACAT | 58.512 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
69 | 70 | 4.506271 | GGGGAGAGGAGACGTACATACATA | 60.506 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
70 | 71 | 5.254901 | GGGAGAGGAGACGTACATACATAT | 58.745 | 45.833 | 0.00 | 0.00 | 0.00 | 1.78 |
71 | 72 | 5.711036 | GGGAGAGGAGACGTACATACATATT | 59.289 | 44.000 | 0.00 | 0.00 | 0.00 | 1.28 |
72 | 73 | 6.127952 | GGGAGAGGAGACGTACATACATATTC | 60.128 | 46.154 | 0.00 | 0.00 | 0.00 | 1.75 |
73 | 74 | 6.402334 | GGAGAGGAGACGTACATACATATTCG | 60.402 | 46.154 | 0.00 | 0.00 | 0.00 | 3.34 |
74 | 75 | 5.411977 | AGAGGAGACGTACATACATATTCGG | 59.588 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
75 | 76 | 4.458295 | AGGAGACGTACATACATATTCGGG | 59.542 | 45.833 | 0.00 | 0.00 | 0.00 | 5.14 |
76 | 77 | 4.456911 | GGAGACGTACATACATATTCGGGA | 59.543 | 45.833 | 0.00 | 0.00 | 0.00 | 5.14 |
77 | 78 | 5.048504 | GGAGACGTACATACATATTCGGGAA | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 3.97 |
78 | 79 | 6.349944 | GGAGACGTACATACATATTCGGGAAT | 60.350 | 42.308 | 0.00 | 0.00 | 34.93 | 3.01 |
79 | 80 | 6.989659 | AGACGTACATACATATTCGGGAATT | 58.010 | 36.000 | 0.00 | 0.00 | 32.50 | 2.17 |
80 | 81 | 7.439381 | AGACGTACATACATATTCGGGAATTT | 58.561 | 34.615 | 0.00 | 0.00 | 32.50 | 1.82 |
81 | 82 | 8.579006 | AGACGTACATACATATTCGGGAATTTA | 58.421 | 33.333 | 0.00 | 0.00 | 32.50 | 1.40 |
82 | 83 | 8.752766 | ACGTACATACATATTCGGGAATTTAG | 57.247 | 34.615 | 0.00 | 0.00 | 32.50 | 1.85 |
83 | 84 | 8.362639 | ACGTACATACATATTCGGGAATTTAGT | 58.637 | 33.333 | 0.00 | 0.00 | 32.50 | 2.24 |
84 | 85 | 8.644619 | CGTACATACATATTCGGGAATTTAGTG | 58.355 | 37.037 | 0.00 | 0.00 | 32.50 | 2.74 |
85 | 86 | 9.701098 | GTACATACATATTCGGGAATTTAGTGA | 57.299 | 33.333 | 0.00 | 0.00 | 32.50 | 3.41 |
86 | 87 | 8.603242 | ACATACATATTCGGGAATTTAGTGAC | 57.397 | 34.615 | 0.00 | 0.00 | 32.50 | 3.67 |
87 | 88 | 8.429641 | ACATACATATTCGGGAATTTAGTGACT | 58.570 | 33.333 | 0.00 | 0.00 | 32.50 | 3.41 |
88 | 89 | 9.923143 | CATACATATTCGGGAATTTAGTGACTA | 57.077 | 33.333 | 0.00 | 0.00 | 32.50 | 2.59 |
90 | 91 | 7.442656 | ACATATTCGGGAATTTAGTGACTAGG | 58.557 | 38.462 | 0.00 | 0.00 | 32.50 | 3.02 |
91 | 92 | 7.289317 | ACATATTCGGGAATTTAGTGACTAGGA | 59.711 | 37.037 | 0.00 | 0.00 | 32.50 | 2.94 |
92 | 93 | 6.555463 | ATTCGGGAATTTAGTGACTAGGAA | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
93 | 94 | 5.334724 | TCGGGAATTTAGTGACTAGGAAC | 57.665 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
94 | 95 | 4.773674 | TCGGGAATTTAGTGACTAGGAACA | 59.226 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
95 | 96 | 5.246656 | TCGGGAATTTAGTGACTAGGAACAA | 59.753 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
96 | 97 | 5.935789 | CGGGAATTTAGTGACTAGGAACAAA | 59.064 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
97 | 98 | 6.598064 | CGGGAATTTAGTGACTAGGAACAAAT | 59.402 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
98 | 99 | 7.767198 | CGGGAATTTAGTGACTAGGAACAAATA | 59.233 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
99 | 100 | 9.457436 | GGGAATTTAGTGACTAGGAACAAATAA | 57.543 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
105 | 106 | 9.595823 | TTAGTGACTAGGAACAAATAACTATGC | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
106 | 107 | 7.620880 | AGTGACTAGGAACAAATAACTATGCA | 58.379 | 34.615 | 0.00 | 0.00 | 0.00 | 3.96 |
107 | 108 | 7.766278 | AGTGACTAGGAACAAATAACTATGCAG | 59.234 | 37.037 | 0.00 | 0.00 | 0.00 | 4.41 |
108 | 109 | 7.764443 | GTGACTAGGAACAAATAACTATGCAGA | 59.236 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
109 | 110 | 8.486210 | TGACTAGGAACAAATAACTATGCAGAT | 58.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
110 | 111 | 9.982651 | GACTAGGAACAAATAACTATGCAGATA | 57.017 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
111 | 112 | 9.988815 | ACTAGGAACAAATAACTATGCAGATAG | 57.011 | 33.333 | 0.00 | 0.00 | 38.06 | 2.08 |
117 | 118 | 8.103948 | ACAAATAACTATGCAGATAGAATGGC | 57.896 | 34.615 | 1.33 | 0.00 | 35.90 | 4.40 |
118 | 119 | 7.175641 | ACAAATAACTATGCAGATAGAATGGCC | 59.824 | 37.037 | 0.00 | 0.00 | 35.90 | 5.36 |
119 | 120 | 4.989875 | AACTATGCAGATAGAATGGCCT | 57.010 | 40.909 | 3.32 | 0.00 | 35.90 | 5.19 |
120 | 121 | 4.989875 | ACTATGCAGATAGAATGGCCTT | 57.010 | 40.909 | 3.32 | 0.00 | 35.90 | 4.35 |
121 | 122 | 4.904241 | ACTATGCAGATAGAATGGCCTTC | 58.096 | 43.478 | 3.32 | 5.53 | 35.90 | 3.46 |
122 | 123 | 2.645838 | TGCAGATAGAATGGCCTTCC | 57.354 | 50.000 | 3.32 | 0.00 | 34.11 | 3.46 |
123 | 124 | 1.143684 | TGCAGATAGAATGGCCTTCCC | 59.856 | 52.381 | 3.32 | 0.00 | 34.11 | 3.97 |
124 | 125 | 1.423161 | GCAGATAGAATGGCCTTCCCT | 59.577 | 52.381 | 3.32 | 1.42 | 34.11 | 4.20 |
125 | 126 | 2.551938 | GCAGATAGAATGGCCTTCCCTC | 60.552 | 54.545 | 3.32 | 5.46 | 34.11 | 4.30 |
126 | 127 | 2.707791 | CAGATAGAATGGCCTTCCCTCA | 59.292 | 50.000 | 3.32 | 0.00 | 34.11 | 3.86 |
127 | 128 | 2.708325 | AGATAGAATGGCCTTCCCTCAC | 59.292 | 50.000 | 3.32 | 0.00 | 34.11 | 3.51 |
128 | 129 | 1.965414 | TAGAATGGCCTTCCCTCACA | 58.035 | 50.000 | 3.32 | 0.00 | 34.11 | 3.58 |
129 | 130 | 1.075601 | AGAATGGCCTTCCCTCACAA | 58.924 | 50.000 | 3.32 | 0.00 | 34.11 | 3.33 |
130 | 131 | 1.428912 | AGAATGGCCTTCCCTCACAAA | 59.571 | 47.619 | 3.32 | 0.00 | 34.11 | 2.83 |
131 | 132 | 2.158325 | AGAATGGCCTTCCCTCACAAAA | 60.158 | 45.455 | 3.32 | 0.00 | 34.11 | 2.44 |
132 | 133 | 2.397044 | ATGGCCTTCCCTCACAAAAA | 57.603 | 45.000 | 3.32 | 0.00 | 0.00 | 1.94 |
162 | 163 | 9.825109 | ACTATGTAGAGAGAAATTTTAGCTTCC | 57.175 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
163 | 164 | 9.267084 | CTATGTAGAGAGAAATTTTAGCTTCCC | 57.733 | 37.037 | 0.00 | 0.00 | 0.00 | 3.97 |
164 | 165 | 7.016153 | TGTAGAGAGAAATTTTAGCTTCCCA | 57.984 | 36.000 | 0.00 | 0.00 | 0.00 | 4.37 |
165 | 166 | 7.458397 | TGTAGAGAGAAATTTTAGCTTCCCAA | 58.542 | 34.615 | 0.00 | 0.00 | 0.00 | 4.12 |
166 | 167 | 7.942341 | TGTAGAGAGAAATTTTAGCTTCCCAAA | 59.058 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
167 | 168 | 7.220741 | AGAGAGAAATTTTAGCTTCCCAAAC | 57.779 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
168 | 169 | 6.777580 | AGAGAGAAATTTTAGCTTCCCAAACA | 59.222 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
169 | 170 | 7.452813 | AGAGAGAAATTTTAGCTTCCCAAACAT | 59.547 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
170 | 171 | 7.966812 | AGAGAAATTTTAGCTTCCCAAACATT | 58.033 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
171 | 172 | 7.874528 | AGAGAAATTTTAGCTTCCCAAACATTG | 59.125 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
172 | 173 | 7.508687 | AGAAATTTTAGCTTCCCAAACATTGT | 58.491 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
173 | 174 | 8.646900 | AGAAATTTTAGCTTCCCAAACATTGTA | 58.353 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
174 | 175 | 8.831715 | AAATTTTAGCTTCCCAAACATTGTAG | 57.168 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
175 | 176 | 6.969993 | TTTTAGCTTCCCAAACATTGTAGT | 57.030 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
176 | 177 | 6.569179 | TTTAGCTTCCCAAACATTGTAGTC | 57.431 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
177 | 178 | 3.421844 | AGCTTCCCAAACATTGTAGTCC | 58.578 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
178 | 179 | 3.153919 | GCTTCCCAAACATTGTAGTCCA | 58.846 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
179 | 180 | 3.763897 | GCTTCCCAAACATTGTAGTCCAT | 59.236 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
180 | 181 | 4.220602 | GCTTCCCAAACATTGTAGTCCATT | 59.779 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
181 | 182 | 5.279456 | GCTTCCCAAACATTGTAGTCCATTT | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
182 | 183 | 6.739331 | TTCCCAAACATTGTAGTCCATTTT | 57.261 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
183 | 184 | 6.739331 | TCCCAAACATTGTAGTCCATTTTT | 57.261 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
184 | 185 | 6.754193 | TCCCAAACATTGTAGTCCATTTTTC | 58.246 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
185 | 186 | 6.325028 | TCCCAAACATTGTAGTCCATTTTTCA | 59.675 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
186 | 187 | 6.989169 | CCCAAACATTGTAGTCCATTTTTCAA | 59.011 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
187 | 188 | 7.042119 | CCCAAACATTGTAGTCCATTTTTCAAC | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
188 | 189 | 7.493971 | CCAAACATTGTAGTCCATTTTTCAACA | 59.506 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
189 | 190 | 9.044150 | CAAACATTGTAGTCCATTTTTCAACAT | 57.956 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
190 | 191 | 8.816640 | AACATTGTAGTCCATTTTTCAACATC | 57.183 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
191 | 192 | 7.378181 | ACATTGTAGTCCATTTTTCAACATCC | 58.622 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
192 | 193 | 6.968263 | TTGTAGTCCATTTTTCAACATCCA | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
193 | 194 | 6.968263 | TGTAGTCCATTTTTCAACATCCAA | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
194 | 195 | 7.353414 | TGTAGTCCATTTTTCAACATCCAAA | 57.647 | 32.000 | 0.00 | 0.00 | 0.00 | 3.28 |
195 | 196 | 7.432869 | TGTAGTCCATTTTTCAACATCCAAAG | 58.567 | 34.615 | 0.00 | 0.00 | 0.00 | 2.77 |
196 | 197 | 6.484364 | AGTCCATTTTTCAACATCCAAAGT | 57.516 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
197 | 198 | 6.888105 | AGTCCATTTTTCAACATCCAAAGTT | 58.112 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
198 | 199 | 7.337938 | AGTCCATTTTTCAACATCCAAAGTTT | 58.662 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
199 | 200 | 7.828717 | AGTCCATTTTTCAACATCCAAAGTTTT | 59.171 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
200 | 201 | 8.458052 | GTCCATTTTTCAACATCCAAAGTTTTT | 58.542 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
230 | 231 | 9.613428 | AAACATACAATCTTTATTCCATCGAGA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 4.04 |
231 | 232 | 9.784531 | AACATACAATCTTTATTCCATCGAGAT | 57.215 | 29.630 | 0.00 | 0.00 | 0.00 | 2.75 |
236 | 237 | 9.265901 | ACAATCTTTATTCCATCGAGATAACTG | 57.734 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
237 | 238 | 9.481340 | CAATCTTTATTCCATCGAGATAACTGA | 57.519 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
243 | 244 | 6.576662 | TTCCATCGAGATAACTGATACTCC | 57.423 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
244 | 245 | 5.010933 | TCCATCGAGATAACTGATACTCCC | 58.989 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
245 | 246 | 5.013547 | CCATCGAGATAACTGATACTCCCT | 58.986 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
246 | 247 | 5.124776 | CCATCGAGATAACTGATACTCCCTC | 59.875 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
247 | 248 | 4.653868 | TCGAGATAACTGATACTCCCTCC | 58.346 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
248 | 249 | 3.437395 | CGAGATAACTGATACTCCCTCCG | 59.563 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
249 | 250 | 4.400120 | GAGATAACTGATACTCCCTCCGT | 58.600 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
250 | 251 | 4.400120 | AGATAACTGATACTCCCTCCGTC | 58.600 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
251 | 252 | 1.777941 | AACTGATACTCCCTCCGTCC | 58.222 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
252 | 253 | 0.106116 | ACTGATACTCCCTCCGTCCC | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
253 | 254 | 0.106167 | CTGATACTCCCTCCGTCCCA | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
254 | 255 | 0.337082 | TGATACTCCCTCCGTCCCAA | 59.663 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
255 | 256 | 1.273381 | TGATACTCCCTCCGTCCCAAA | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
256 | 257 | 1.835531 | GATACTCCCTCCGTCCCAAAA | 59.164 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
257 | 258 | 1.961133 | TACTCCCTCCGTCCCAAAAT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
258 | 259 | 0.328258 | ACTCCCTCCGTCCCAAAATG | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
259 | 260 | 0.328258 | CTCCCTCCGTCCCAAAATGT | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
260 | 261 | 1.557832 | CTCCCTCCGTCCCAAAATGTA | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
261 | 262 | 1.986631 | TCCCTCCGTCCCAAAATGTAA | 59.013 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
262 | 263 | 2.026636 | TCCCTCCGTCCCAAAATGTAAG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
263 | 264 | 2.026636 | CCCTCCGTCCCAAAATGTAAGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
264 | 265 | 3.371595 | CCCTCCGTCCCAAAATGTAAGAT | 60.372 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
265 | 266 | 3.877508 | CCTCCGTCCCAAAATGTAAGATC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
266 | 267 | 4.513442 | CTCCGTCCCAAAATGTAAGATCA | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
267 | 268 | 5.110814 | TCCGTCCCAAAATGTAAGATCAT | 57.889 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
268 | 269 | 5.505780 | TCCGTCCCAAAATGTAAGATCATT | 58.494 | 37.500 | 0.00 | 0.00 | 39.35 | 2.57 |
269 | 270 | 5.949354 | TCCGTCCCAAAATGTAAGATCATTT | 59.051 | 36.000 | 0.00 | 0.00 | 45.94 | 2.32 |
278 | 279 | 5.818136 | ATGTAAGATCATTTTGACACCGG | 57.182 | 39.130 | 0.00 | 0.00 | 0.00 | 5.28 |
279 | 280 | 4.900684 | TGTAAGATCATTTTGACACCGGA | 58.099 | 39.130 | 9.46 | 0.00 | 0.00 | 5.14 |
280 | 281 | 4.935205 | TGTAAGATCATTTTGACACCGGAG | 59.065 | 41.667 | 9.46 | 1.26 | 0.00 | 4.63 |
281 | 282 | 8.757495 | AATGTAAGATCATTTTGACACCGGAGG | 61.757 | 40.741 | 9.46 | 1.46 | 44.07 | 4.30 |
298 | 299 | 5.821516 | CGGAGGGAGTACATCATAGTATC | 57.178 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
299 | 300 | 5.502079 | CGGAGGGAGTACATCATAGTATCT | 58.498 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
300 | 301 | 6.651086 | CGGAGGGAGTACATCATAGTATCTA | 58.349 | 44.000 | 0.00 | 0.00 | 0.00 | 1.98 |
301 | 302 | 7.284074 | CGGAGGGAGTACATCATAGTATCTAT | 58.716 | 42.308 | 0.00 | 0.00 | 0.00 | 1.98 |
302 | 303 | 7.442969 | CGGAGGGAGTACATCATAGTATCTATC | 59.557 | 44.444 | 0.00 | 0.00 | 0.00 | 2.08 |
303 | 304 | 8.499406 | GGAGGGAGTACATCATAGTATCTATCT | 58.501 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
430 | 431 | 6.975197 | TGATATGAGACTAGAGCAAAAGTTCG | 59.025 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
522 | 523 | 3.643763 | AGACATCTCGTGAATATTCGGC | 58.356 | 45.455 | 10.80 | 5.53 | 0.00 | 5.54 |
615 | 618 | 7.233962 | TGCATGAATGGATGGCTTAGATTAAAT | 59.766 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
663 | 666 | 9.483916 | GTAAGAGAGGATAATCTTAAAAGAGCC | 57.516 | 37.037 | 0.00 | 0.00 | 39.17 | 4.70 |
666 | 669 | 7.127955 | AGAGAGGATAATCTTAAAAGAGCCCAA | 59.872 | 37.037 | 0.00 | 0.00 | 38.66 | 4.12 |
683 | 686 | 6.441604 | AGAGCCCAAATTGAAAATCTACCATT | 59.558 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
808 | 812 | 2.135933 | GCTTATCGCTACCATGTGTCC | 58.864 | 52.381 | 0.00 | 0.00 | 35.14 | 4.02 |
850 | 854 | 7.648112 | GCGTTACTAGTTCATAGATGATGACAA | 59.352 | 37.037 | 0.00 | 0.00 | 44.53 | 3.18 |
929 | 935 | 1.062488 | AGCACACCAGTCCCCTTTCT | 61.062 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1010 | 1021 | 0.749091 | CAAGATCTCATGGCCGCCAA | 60.749 | 55.000 | 18.00 | 0.00 | 36.95 | 4.52 |
1231 | 1248 | 2.421314 | CTCTGCCACCACACGTGA | 59.579 | 61.111 | 25.01 | 0.00 | 46.20 | 4.35 |
1350 | 1379 | 0.813610 | CACAAGTGCCTTCACCGTCA | 60.814 | 55.000 | 0.00 | 0.00 | 44.16 | 4.35 |
1415 | 1444 | 4.379243 | ACCGAGCCAAGCGACAGG | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1424 | 1453 | 3.537206 | AAGCGACAGGCCTGGTGAC | 62.537 | 63.158 | 35.42 | 21.27 | 45.17 | 3.67 |
1461 | 1490 | 0.681887 | CTGGTCTGGCATTGGCATCA | 60.682 | 55.000 | 13.83 | 11.14 | 43.71 | 3.07 |
1472 | 1501 | 0.758310 | TTGGCATCAACCCAAGTGCA | 60.758 | 50.000 | 0.00 | 0.00 | 37.43 | 4.57 |
1473 | 1502 | 0.542467 | TGGCATCAACCCAAGTGCAT | 60.542 | 50.000 | 0.00 | 0.00 | 39.27 | 3.96 |
1489 | 1518 | 2.278596 | ATCCGATTGTCGCGACGG | 60.279 | 61.111 | 31.88 | 28.22 | 45.61 | 4.79 |
1490 | 1519 | 3.768185 | ATCCGATTGTCGCGACGGG | 62.768 | 63.158 | 31.88 | 27.36 | 44.57 | 5.28 |
1789 | 2613 | 2.032528 | CGAGAAGGCTTGCACCCA | 59.967 | 61.111 | 3.46 | 0.00 | 0.00 | 4.51 |
1844 | 2668 | 1.402968 | CCTGAACATGCCGGAGATTTG | 59.597 | 52.381 | 5.05 | 0.00 | 0.00 | 2.32 |
1850 | 2674 | 4.156455 | ACATGCCGGAGATTTGATTAGT | 57.844 | 40.909 | 5.05 | 0.00 | 0.00 | 2.24 |
1957 | 2788 | 2.693267 | ATTAGAGTCCGGCAGTTTCC | 57.307 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2000 | 2831 | 7.547227 | AGTATTTAATTTTGGTGGCTAGCTTG | 58.453 | 34.615 | 15.72 | 0.00 | 0.00 | 4.01 |
2071 | 2902 | 3.758554 | CACCATGGTCCGATCTTTCTTTT | 59.241 | 43.478 | 16.53 | 0.00 | 0.00 | 2.27 |
2104 | 2937 | 5.278907 | CCTTTGTCTTGGTCATGTATTTGCA | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2156 | 2991 | 6.292757 | GCTTTACTAATTCTTAGCCGCCTAAC | 60.293 | 42.308 | 0.00 | 0.00 | 36.71 | 2.34 |
2258 | 3095 | 8.281212 | ACCCATGTTAGATCAAGTTTCAATAC | 57.719 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
2259 | 3096 | 8.109634 | ACCCATGTTAGATCAAGTTTCAATACT | 58.890 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2260 | 3097 | 9.613428 | CCCATGTTAGATCAAGTTTCAATACTA | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2343 | 3181 | 8.970859 | AACATAGGGAAAAGACTTGAGATATG | 57.029 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
2449 | 3287 | 1.181786 | CAGACTGAGGTGGAGGACTC | 58.818 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2464 | 3302 | 5.422331 | TGGAGGACTCGATGAAATTTAGAGT | 59.578 | 40.000 | 14.11 | 14.11 | 43.88 | 3.24 |
2467 | 3305 | 4.271291 | GGACTCGATGAAATTTAGAGTGGC | 59.729 | 45.833 | 17.25 | 8.29 | 41.61 | 5.01 |
2471 | 3309 | 3.941483 | CGATGAAATTTAGAGTGGCAGGT | 59.059 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2518 | 3364 | 1.144708 | TCCTTGTTTGGATGGCAGACA | 59.855 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2543 | 3389 | 3.509967 | ACTTGCCTTACCAAATTGTAGGC | 59.490 | 43.478 | 18.20 | 18.20 | 36.44 | 3.93 |
2557 | 3403 | 3.799432 | TGTAGGCATTAACCAACAGGT | 57.201 | 42.857 | 0.00 | 0.00 | 37.19 | 4.00 |
2567 | 3413 | 0.405585 | ACCAACAGGTAAGGCATGCT | 59.594 | 50.000 | 18.92 | 0.24 | 32.67 | 3.79 |
2573 | 3419 | 1.205417 | CAGGTAAGGCATGCTTTTGGG | 59.795 | 52.381 | 20.95 | 4.76 | 0.00 | 4.12 |
2630 | 3476 | 1.930371 | GCCACCGCTTTTGATTGTGTC | 60.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
2635 | 3481 | 3.244422 | ACCGCTTTTGATTGTGTCTCCTA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
2649 | 3495 | 2.148611 | TCCTACGCGGGAGATCCTA | 58.851 | 57.895 | 12.47 | 0.00 | 35.95 | 2.94 |
2653 | 3499 | 2.160205 | CTACGCGGGAGATCCTAATGA | 58.840 | 52.381 | 12.47 | 0.00 | 35.95 | 2.57 |
2654 | 3500 | 1.633774 | ACGCGGGAGATCCTAATGAT | 58.366 | 50.000 | 12.47 | 0.00 | 36.01 | 2.45 |
2692 | 3543 | 1.309499 | TTAATTGACGCCCCGCTTGG | 61.309 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2765 | 3616 | 5.462034 | CACGTCTTGGATTCAGATTTCTC | 57.538 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
2766 | 3617 | 4.931601 | CACGTCTTGGATTCAGATTTCTCA | 59.068 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
2768 | 3619 | 5.814705 | ACGTCTTGGATTCAGATTTCTCATC | 59.185 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2769 | 3620 | 5.814188 | CGTCTTGGATTCAGATTTCTCATCA | 59.186 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2784 | 3677 | 3.769300 | TCTCATCAGGACTTCAAATCGGA | 59.231 | 43.478 | 0.00 | 0.00 | 0.00 | 4.55 |
2789 | 3682 | 5.102953 | TCAGGACTTCAAATCGGATGATT | 57.897 | 39.130 | 0.00 | 0.00 | 46.75 | 2.57 |
2838 | 3731 | 2.542597 | CATTTTCCAATGCATCCACGG | 58.457 | 47.619 | 0.00 | 0.00 | 33.57 | 4.94 |
2839 | 3732 | 0.246086 | TTTTCCAATGCATCCACGGC | 59.754 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2841 | 3734 | 3.891400 | CCAATGCATCCACGGCCG | 61.891 | 66.667 | 26.86 | 26.86 | 0.00 | 6.13 |
2842 | 3735 | 2.823593 | CAATGCATCCACGGCCGA | 60.824 | 61.111 | 35.90 | 10.61 | 0.00 | 5.54 |
2843 | 3736 | 2.188829 | CAATGCATCCACGGCCGAT | 61.189 | 57.895 | 35.90 | 12.97 | 0.00 | 4.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 3.810896 | CAAAACCCTAGCCGCGCC | 61.811 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
6 | 7 | 2.744709 | TCAAAACCCTAGCCGCGC | 60.745 | 61.111 | 0.00 | 0.00 | 0.00 | 6.86 |
7 | 8 | 0.953960 | AAGTCAAAACCCTAGCCGCG | 60.954 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
8 | 9 | 0.521735 | CAAGTCAAAACCCTAGCCGC | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
9 | 10 | 1.165270 | CCAAGTCAAAACCCTAGCCG | 58.835 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
10 | 11 | 1.545841 | CCCAAGTCAAAACCCTAGCC | 58.454 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
11 | 12 | 1.545841 | CCCCAAGTCAAAACCCTAGC | 58.454 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
12 | 13 | 1.075536 | AGCCCCAAGTCAAAACCCTAG | 59.924 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
13 | 14 | 1.154430 | AGCCCCAAGTCAAAACCCTA | 58.846 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
14 | 15 | 0.469892 | CAGCCCCAAGTCAAAACCCT | 60.470 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
15 | 16 | 1.471829 | CCAGCCCCAAGTCAAAACCC | 61.472 | 60.000 | 0.00 | 0.00 | 0.00 | 4.11 |
16 | 17 | 0.759060 | ACCAGCCCCAAGTCAAAACC | 60.759 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
17 | 18 | 1.119684 | AACCAGCCCCAAGTCAAAAC | 58.880 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
18 | 19 | 1.760029 | GAAACCAGCCCCAAGTCAAAA | 59.240 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
19 | 20 | 1.063266 | AGAAACCAGCCCCAAGTCAAA | 60.063 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
20 | 21 | 0.555769 | AGAAACCAGCCCCAAGTCAA | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
21 | 22 | 0.555769 | AAGAAACCAGCCCCAAGTCA | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
22 | 23 | 1.704641 | AAAGAAACCAGCCCCAAGTC | 58.295 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
23 | 24 | 3.542969 | ATAAAGAAACCAGCCCCAAGT | 57.457 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
24 | 25 | 3.119495 | CGAATAAAGAAACCAGCCCCAAG | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
25 | 26 | 2.823154 | CGAATAAAGAAACCAGCCCCAA | 59.177 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
26 | 27 | 2.442413 | CGAATAAAGAAACCAGCCCCA | 58.558 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
27 | 28 | 1.749063 | CCGAATAAAGAAACCAGCCCC | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
28 | 29 | 1.749063 | CCCGAATAAAGAAACCAGCCC | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
29 | 30 | 1.749063 | CCCCGAATAAAGAAACCAGCC | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
30 | 31 | 2.683362 | CTCCCCGAATAAAGAAACCAGC | 59.317 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
31 | 32 | 4.192317 | CTCTCCCCGAATAAAGAAACCAG | 58.808 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
32 | 33 | 3.054655 | CCTCTCCCCGAATAAAGAAACCA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
33 | 34 | 3.199289 | TCCTCTCCCCGAATAAAGAAACC | 59.801 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
34 | 35 | 4.161754 | TCTCCTCTCCCCGAATAAAGAAAC | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 2.78 |
35 | 36 | 4.161754 | GTCTCCTCTCCCCGAATAAAGAAA | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
36 | 37 | 3.705072 | GTCTCCTCTCCCCGAATAAAGAA | 59.295 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
37 | 38 | 3.297736 | GTCTCCTCTCCCCGAATAAAGA | 58.702 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
38 | 39 | 2.034812 | CGTCTCCTCTCCCCGAATAAAG | 59.965 | 54.545 | 0.00 | 0.00 | 0.00 | 1.85 |
39 | 40 | 2.029623 | CGTCTCCTCTCCCCGAATAAA | 58.970 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
40 | 41 | 1.064166 | ACGTCTCCTCTCCCCGAATAA | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
41 | 42 | 0.549950 | ACGTCTCCTCTCCCCGAATA | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 1.75 |
42 | 43 | 0.549950 | TACGTCTCCTCTCCCCGAAT | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
43 | 44 | 0.393537 | GTACGTCTCCTCTCCCCGAA | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
44 | 45 | 1.222936 | GTACGTCTCCTCTCCCCGA | 59.777 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
45 | 46 | 0.465824 | ATGTACGTCTCCTCTCCCCG | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
46 | 47 | 2.228925 | GTATGTACGTCTCCTCTCCCC | 58.771 | 57.143 | 0.00 | 0.00 | 0.00 | 4.81 |
47 | 48 | 2.928334 | TGTATGTACGTCTCCTCTCCC | 58.072 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
48 | 49 | 6.402334 | CGAATATGTATGTACGTCTCCTCTCC | 60.402 | 46.154 | 0.00 | 0.00 | 0.00 | 3.71 |
49 | 50 | 6.402334 | CCGAATATGTATGTACGTCTCCTCTC | 60.402 | 46.154 | 0.00 | 0.00 | 0.00 | 3.20 |
50 | 51 | 5.411977 | CCGAATATGTATGTACGTCTCCTCT | 59.588 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
51 | 52 | 5.391736 | CCCGAATATGTATGTACGTCTCCTC | 60.392 | 48.000 | 0.00 | 0.00 | 0.00 | 3.71 |
52 | 53 | 4.458295 | CCCGAATATGTATGTACGTCTCCT | 59.542 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
53 | 54 | 4.456911 | TCCCGAATATGTATGTACGTCTCC | 59.543 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
54 | 55 | 5.618056 | TCCCGAATATGTATGTACGTCTC | 57.382 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
55 | 56 | 6.585695 | ATTCCCGAATATGTATGTACGTCT | 57.414 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
56 | 57 | 7.647907 | AAATTCCCGAATATGTATGTACGTC | 57.352 | 36.000 | 0.00 | 0.00 | 0.00 | 4.34 |
57 | 58 | 8.362639 | ACTAAATTCCCGAATATGTATGTACGT | 58.637 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
58 | 59 | 8.644619 | CACTAAATTCCCGAATATGTATGTACG | 58.355 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
59 | 60 | 9.701098 | TCACTAAATTCCCGAATATGTATGTAC | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
60 | 61 | 9.701098 | GTCACTAAATTCCCGAATATGTATGTA | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
61 | 62 | 8.429641 | AGTCACTAAATTCCCGAATATGTATGT | 58.570 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
62 | 63 | 8.833231 | AGTCACTAAATTCCCGAATATGTATG | 57.167 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
64 | 65 | 8.582437 | CCTAGTCACTAAATTCCCGAATATGTA | 58.418 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
65 | 66 | 7.289317 | TCCTAGTCACTAAATTCCCGAATATGT | 59.711 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
66 | 67 | 7.667557 | TCCTAGTCACTAAATTCCCGAATATG | 58.332 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
67 | 68 | 7.850935 | TCCTAGTCACTAAATTCCCGAATAT | 57.149 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
68 | 69 | 7.124599 | TGTTCCTAGTCACTAAATTCCCGAATA | 59.875 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
69 | 70 | 6.070424 | TGTTCCTAGTCACTAAATTCCCGAAT | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
70 | 71 | 5.246656 | TGTTCCTAGTCACTAAATTCCCGAA | 59.753 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
71 | 72 | 4.773674 | TGTTCCTAGTCACTAAATTCCCGA | 59.226 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
72 | 73 | 5.080969 | TGTTCCTAGTCACTAAATTCCCG | 57.919 | 43.478 | 0.00 | 0.00 | 0.00 | 5.14 |
73 | 74 | 7.939784 | ATTTGTTCCTAGTCACTAAATTCCC | 57.060 | 36.000 | 0.00 | 0.00 | 0.00 | 3.97 |
79 | 80 | 9.595823 | GCATAGTTATTTGTTCCTAGTCACTAA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
80 | 81 | 8.755028 | TGCATAGTTATTTGTTCCTAGTCACTA | 58.245 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
81 | 82 | 7.620880 | TGCATAGTTATTTGTTCCTAGTCACT | 58.379 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
82 | 83 | 7.764443 | TCTGCATAGTTATTTGTTCCTAGTCAC | 59.236 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
83 | 84 | 7.847096 | TCTGCATAGTTATTTGTTCCTAGTCA | 58.153 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
84 | 85 | 8.894768 | ATCTGCATAGTTATTTGTTCCTAGTC | 57.105 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
85 | 86 | 9.988815 | CTATCTGCATAGTTATTTGTTCCTAGT | 57.011 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
91 | 92 | 8.571336 | GCCATTCTATCTGCATAGTTATTTGTT | 58.429 | 33.333 | 0.00 | 0.00 | 34.54 | 2.83 |
92 | 93 | 7.175641 | GGCCATTCTATCTGCATAGTTATTTGT | 59.824 | 37.037 | 0.00 | 0.00 | 34.54 | 2.83 |
93 | 94 | 7.392673 | AGGCCATTCTATCTGCATAGTTATTTG | 59.607 | 37.037 | 5.01 | 0.00 | 34.54 | 2.32 |
94 | 95 | 7.465116 | AGGCCATTCTATCTGCATAGTTATTT | 58.535 | 34.615 | 5.01 | 0.00 | 34.54 | 1.40 |
95 | 96 | 7.025520 | AGGCCATTCTATCTGCATAGTTATT | 57.974 | 36.000 | 5.01 | 0.00 | 34.54 | 1.40 |
96 | 97 | 6.633325 | AGGCCATTCTATCTGCATAGTTAT | 57.367 | 37.500 | 5.01 | 0.00 | 34.54 | 1.89 |
97 | 98 | 6.439636 | AAGGCCATTCTATCTGCATAGTTA | 57.560 | 37.500 | 5.01 | 0.00 | 34.54 | 2.24 |
98 | 99 | 4.989875 | AGGCCATTCTATCTGCATAGTT | 57.010 | 40.909 | 5.01 | 0.00 | 34.54 | 2.24 |
99 | 100 | 4.263243 | GGAAGGCCATTCTATCTGCATAGT | 60.263 | 45.833 | 5.01 | 0.00 | 38.07 | 2.12 |
100 | 101 | 4.260170 | GGAAGGCCATTCTATCTGCATAG | 58.740 | 47.826 | 5.01 | 0.00 | 38.07 | 2.23 |
101 | 102 | 3.009473 | GGGAAGGCCATTCTATCTGCATA | 59.991 | 47.826 | 5.01 | 0.00 | 38.07 | 3.14 |
102 | 103 | 2.224967 | GGGAAGGCCATTCTATCTGCAT | 60.225 | 50.000 | 5.01 | 0.00 | 38.07 | 3.96 |
103 | 104 | 1.143684 | GGGAAGGCCATTCTATCTGCA | 59.856 | 52.381 | 5.01 | 0.00 | 38.07 | 4.41 |
104 | 105 | 1.423161 | AGGGAAGGCCATTCTATCTGC | 59.577 | 52.381 | 5.01 | 0.00 | 38.07 | 4.26 |
105 | 106 | 2.707791 | TGAGGGAAGGCCATTCTATCTG | 59.292 | 50.000 | 5.01 | 0.00 | 38.07 | 2.90 |
106 | 107 | 2.708325 | GTGAGGGAAGGCCATTCTATCT | 59.292 | 50.000 | 5.01 | 5.77 | 38.07 | 1.98 |
107 | 108 | 2.439507 | TGTGAGGGAAGGCCATTCTATC | 59.560 | 50.000 | 5.01 | 8.77 | 38.07 | 2.08 |
108 | 109 | 2.492025 | TGTGAGGGAAGGCCATTCTAT | 58.508 | 47.619 | 5.01 | 0.00 | 38.07 | 1.98 |
109 | 110 | 1.965414 | TGTGAGGGAAGGCCATTCTA | 58.035 | 50.000 | 5.01 | 0.00 | 38.07 | 2.10 |
110 | 111 | 1.075601 | TTGTGAGGGAAGGCCATTCT | 58.924 | 50.000 | 5.01 | 0.00 | 38.07 | 2.40 |
111 | 112 | 1.923356 | TTTGTGAGGGAAGGCCATTC | 58.077 | 50.000 | 5.01 | 5.92 | 37.17 | 2.67 |
112 | 113 | 2.397044 | TTTTGTGAGGGAAGGCCATT | 57.603 | 45.000 | 5.01 | 0.00 | 35.15 | 3.16 |
113 | 114 | 2.397044 | TTTTTGTGAGGGAAGGCCAT | 57.603 | 45.000 | 5.01 | 0.00 | 35.15 | 4.40 |
114 | 115 | 3.935371 | TTTTTGTGAGGGAAGGCCA | 57.065 | 47.368 | 5.01 | 0.00 | 35.15 | 5.36 |
136 | 137 | 9.825109 | GGAAGCTAAAATTTCTCTCTACATAGT | 57.175 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
137 | 138 | 9.267084 | GGGAAGCTAAAATTTCTCTCTACATAG | 57.733 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
138 | 139 | 8.768397 | TGGGAAGCTAAAATTTCTCTCTACATA | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
139 | 140 | 7.633789 | TGGGAAGCTAAAATTTCTCTCTACAT | 58.366 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
140 | 141 | 7.016153 | TGGGAAGCTAAAATTTCTCTCTACA | 57.984 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
141 | 142 | 7.923414 | TTGGGAAGCTAAAATTTCTCTCTAC | 57.077 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
142 | 143 | 7.942341 | TGTTTGGGAAGCTAAAATTTCTCTCTA | 59.058 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
143 | 144 | 6.777580 | TGTTTGGGAAGCTAAAATTTCTCTCT | 59.222 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
144 | 145 | 6.981722 | TGTTTGGGAAGCTAAAATTTCTCTC | 58.018 | 36.000 | 0.00 | 0.00 | 0.00 | 3.20 |
145 | 146 | 6.976934 | TGTTTGGGAAGCTAAAATTTCTCT | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
146 | 147 | 7.657354 | ACAATGTTTGGGAAGCTAAAATTTCTC | 59.343 | 33.333 | 0.00 | 0.00 | 34.12 | 2.87 |
147 | 148 | 7.508687 | ACAATGTTTGGGAAGCTAAAATTTCT | 58.491 | 30.769 | 0.00 | 0.00 | 34.12 | 2.52 |
148 | 149 | 7.728847 | ACAATGTTTGGGAAGCTAAAATTTC | 57.271 | 32.000 | 0.00 | 0.00 | 34.12 | 2.17 |
149 | 150 | 8.428852 | ACTACAATGTTTGGGAAGCTAAAATTT | 58.571 | 29.630 | 0.00 | 0.00 | 34.12 | 1.82 |
150 | 151 | 7.962441 | ACTACAATGTTTGGGAAGCTAAAATT | 58.038 | 30.769 | 0.00 | 0.00 | 34.12 | 1.82 |
151 | 152 | 7.309805 | GGACTACAATGTTTGGGAAGCTAAAAT | 60.310 | 37.037 | 0.00 | 0.00 | 34.12 | 1.82 |
152 | 153 | 6.015772 | GGACTACAATGTTTGGGAAGCTAAAA | 60.016 | 38.462 | 0.00 | 0.00 | 34.12 | 1.52 |
153 | 154 | 5.475564 | GGACTACAATGTTTGGGAAGCTAAA | 59.524 | 40.000 | 0.00 | 0.00 | 34.12 | 1.85 |
154 | 155 | 5.007682 | GGACTACAATGTTTGGGAAGCTAA | 58.992 | 41.667 | 0.00 | 0.00 | 34.12 | 3.09 |
155 | 156 | 4.042311 | TGGACTACAATGTTTGGGAAGCTA | 59.958 | 41.667 | 0.00 | 0.00 | 34.12 | 3.32 |
156 | 157 | 3.181434 | TGGACTACAATGTTTGGGAAGCT | 60.181 | 43.478 | 0.00 | 0.00 | 34.12 | 3.74 |
157 | 158 | 3.153919 | TGGACTACAATGTTTGGGAAGC | 58.846 | 45.455 | 0.00 | 0.00 | 34.12 | 3.86 |
158 | 159 | 5.982890 | AATGGACTACAATGTTTGGGAAG | 57.017 | 39.130 | 0.00 | 0.00 | 34.12 | 3.46 |
159 | 160 | 6.739331 | AAAATGGACTACAATGTTTGGGAA | 57.261 | 33.333 | 0.00 | 0.00 | 34.12 | 3.97 |
160 | 161 | 6.325028 | TGAAAAATGGACTACAATGTTTGGGA | 59.675 | 34.615 | 0.00 | 0.00 | 34.12 | 4.37 |
161 | 162 | 6.520272 | TGAAAAATGGACTACAATGTTTGGG | 58.480 | 36.000 | 0.00 | 0.00 | 34.12 | 4.12 |
162 | 163 | 7.493971 | TGTTGAAAAATGGACTACAATGTTTGG | 59.506 | 33.333 | 0.00 | 0.00 | 34.12 | 3.28 |
163 | 164 | 8.417780 | TGTTGAAAAATGGACTACAATGTTTG | 57.582 | 30.769 | 0.00 | 0.00 | 0.00 | 2.93 |
164 | 165 | 9.260002 | GATGTTGAAAAATGGACTACAATGTTT | 57.740 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
165 | 166 | 7.872483 | GGATGTTGAAAAATGGACTACAATGTT | 59.128 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
166 | 167 | 7.015098 | TGGATGTTGAAAAATGGACTACAATGT | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
167 | 168 | 7.377398 | TGGATGTTGAAAAATGGACTACAATG | 58.623 | 34.615 | 0.00 | 0.00 | 0.00 | 2.82 |
168 | 169 | 7.537596 | TGGATGTTGAAAAATGGACTACAAT | 57.462 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
169 | 170 | 6.968263 | TGGATGTTGAAAAATGGACTACAA | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
170 | 171 | 6.968263 | TTGGATGTTGAAAAATGGACTACA | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
171 | 172 | 7.433680 | ACTTTGGATGTTGAAAAATGGACTAC | 58.566 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
172 | 173 | 7.595819 | ACTTTGGATGTTGAAAAATGGACTA | 57.404 | 32.000 | 0.00 | 0.00 | 0.00 | 2.59 |
173 | 174 | 6.484364 | ACTTTGGATGTTGAAAAATGGACT | 57.516 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
174 | 175 | 7.552458 | AAACTTTGGATGTTGAAAAATGGAC | 57.448 | 32.000 | 0.00 | 0.00 | 0.00 | 4.02 |
175 | 176 | 8.572855 | AAAAACTTTGGATGTTGAAAAATGGA | 57.427 | 26.923 | 0.00 | 0.00 | 0.00 | 3.41 |
204 | 205 | 9.613428 | TCTCGATGGAATAAAGATTGTATGTTT | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
205 | 206 | 9.784531 | ATCTCGATGGAATAAAGATTGTATGTT | 57.215 | 29.630 | 0.00 | 0.00 | 26.72 | 2.71 |
210 | 211 | 9.265901 | CAGTTATCTCGATGGAATAAAGATTGT | 57.734 | 33.333 | 0.00 | 0.00 | 32.06 | 2.71 |
211 | 212 | 9.481340 | TCAGTTATCTCGATGGAATAAAGATTG | 57.519 | 33.333 | 0.00 | 0.00 | 32.06 | 2.67 |
217 | 218 | 8.740906 | GGAGTATCAGTTATCTCGATGGAATAA | 58.259 | 37.037 | 0.00 | 0.00 | 36.25 | 1.40 |
218 | 219 | 7.339721 | GGGAGTATCAGTTATCTCGATGGAATA | 59.660 | 40.741 | 0.00 | 0.00 | 36.25 | 1.75 |
219 | 220 | 6.153680 | GGGAGTATCAGTTATCTCGATGGAAT | 59.846 | 42.308 | 0.00 | 0.00 | 36.25 | 3.01 |
220 | 221 | 5.477291 | GGGAGTATCAGTTATCTCGATGGAA | 59.523 | 44.000 | 0.00 | 0.00 | 36.25 | 3.53 |
221 | 222 | 5.010933 | GGGAGTATCAGTTATCTCGATGGA | 58.989 | 45.833 | 0.00 | 0.00 | 36.25 | 3.41 |
222 | 223 | 5.013547 | AGGGAGTATCAGTTATCTCGATGG | 58.986 | 45.833 | 0.00 | 0.00 | 36.25 | 3.51 |
223 | 224 | 5.124776 | GGAGGGAGTATCAGTTATCTCGATG | 59.875 | 48.000 | 0.00 | 0.00 | 36.25 | 3.84 |
224 | 225 | 5.258051 | GGAGGGAGTATCAGTTATCTCGAT | 58.742 | 45.833 | 0.00 | 0.00 | 36.25 | 3.59 |
225 | 226 | 4.653868 | GGAGGGAGTATCAGTTATCTCGA | 58.346 | 47.826 | 0.00 | 0.00 | 36.25 | 4.04 |
226 | 227 | 3.437395 | CGGAGGGAGTATCAGTTATCTCG | 59.563 | 52.174 | 0.00 | 0.00 | 36.25 | 4.04 |
227 | 228 | 4.400120 | ACGGAGGGAGTATCAGTTATCTC | 58.600 | 47.826 | 0.00 | 0.00 | 36.25 | 2.75 |
228 | 229 | 4.400120 | GACGGAGGGAGTATCAGTTATCT | 58.600 | 47.826 | 0.00 | 0.00 | 36.25 | 1.98 |
229 | 230 | 3.506844 | GGACGGAGGGAGTATCAGTTATC | 59.493 | 52.174 | 0.00 | 0.00 | 36.25 | 1.75 |
230 | 231 | 3.498334 | GGACGGAGGGAGTATCAGTTAT | 58.502 | 50.000 | 0.00 | 0.00 | 36.25 | 1.89 |
231 | 232 | 2.423947 | GGGACGGAGGGAGTATCAGTTA | 60.424 | 54.545 | 0.00 | 0.00 | 36.25 | 2.24 |
232 | 233 | 1.688627 | GGGACGGAGGGAGTATCAGTT | 60.689 | 57.143 | 0.00 | 0.00 | 36.25 | 3.16 |
233 | 234 | 0.106116 | GGGACGGAGGGAGTATCAGT | 60.106 | 60.000 | 0.00 | 0.00 | 36.25 | 3.41 |
234 | 235 | 0.106167 | TGGGACGGAGGGAGTATCAG | 60.106 | 60.000 | 0.00 | 0.00 | 36.25 | 2.90 |
235 | 236 | 0.337082 | TTGGGACGGAGGGAGTATCA | 59.663 | 55.000 | 0.00 | 0.00 | 36.25 | 2.15 |
236 | 237 | 1.492764 | TTTGGGACGGAGGGAGTATC | 58.507 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
237 | 238 | 1.961133 | TTTTGGGACGGAGGGAGTAT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
238 | 239 | 1.557832 | CATTTTGGGACGGAGGGAGTA | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
239 | 240 | 0.328258 | CATTTTGGGACGGAGGGAGT | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
240 | 241 | 0.328258 | ACATTTTGGGACGGAGGGAG | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
241 | 242 | 1.659022 | TACATTTTGGGACGGAGGGA | 58.341 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
242 | 243 | 2.026636 | TCTTACATTTTGGGACGGAGGG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
243 | 244 | 3.343941 | TCTTACATTTTGGGACGGAGG | 57.656 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
244 | 245 | 4.513442 | TGATCTTACATTTTGGGACGGAG | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
245 | 246 | 4.561500 | TGATCTTACATTTTGGGACGGA | 57.438 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
246 | 247 | 5.835113 | AATGATCTTACATTTTGGGACGG | 57.165 | 39.130 | 0.00 | 0.00 | 37.20 | 4.79 |
255 | 256 | 5.943416 | TCCGGTGTCAAAATGATCTTACATT | 59.057 | 36.000 | 0.00 | 0.00 | 41.43 | 2.71 |
256 | 257 | 5.496556 | TCCGGTGTCAAAATGATCTTACAT | 58.503 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
257 | 258 | 4.900684 | TCCGGTGTCAAAATGATCTTACA | 58.099 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
258 | 259 | 4.332819 | CCTCCGGTGTCAAAATGATCTTAC | 59.667 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
259 | 260 | 4.513442 | CCTCCGGTGTCAAAATGATCTTA | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
260 | 261 | 3.347216 | CCTCCGGTGTCAAAATGATCTT | 58.653 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
261 | 262 | 2.356125 | CCCTCCGGTGTCAAAATGATCT | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
262 | 263 | 2.017049 | CCCTCCGGTGTCAAAATGATC | 58.983 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
263 | 264 | 1.633432 | TCCCTCCGGTGTCAAAATGAT | 59.367 | 47.619 | 0.00 | 0.00 | 0.00 | 2.45 |
264 | 265 | 1.003118 | CTCCCTCCGGTGTCAAAATGA | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
265 | 266 | 1.271379 | ACTCCCTCCGGTGTCAAAATG | 60.271 | 52.381 | 0.00 | 0.00 | 29.65 | 2.32 |
266 | 267 | 1.064825 | ACTCCCTCCGGTGTCAAAAT | 58.935 | 50.000 | 0.00 | 0.00 | 29.65 | 1.82 |
267 | 268 | 1.345415 | GTACTCCCTCCGGTGTCAAAA | 59.655 | 52.381 | 0.00 | 0.00 | 37.13 | 2.44 |
268 | 269 | 0.971386 | GTACTCCCTCCGGTGTCAAA | 59.029 | 55.000 | 0.00 | 0.00 | 37.13 | 2.69 |
269 | 270 | 0.178955 | TGTACTCCCTCCGGTGTCAA | 60.179 | 55.000 | 0.00 | 0.00 | 37.13 | 3.18 |
270 | 271 | 0.040646 | ATGTACTCCCTCCGGTGTCA | 59.959 | 55.000 | 0.00 | 0.00 | 37.13 | 3.58 |
271 | 272 | 0.745468 | GATGTACTCCCTCCGGTGTC | 59.255 | 60.000 | 0.00 | 0.00 | 37.13 | 3.67 |
272 | 273 | 0.040646 | TGATGTACTCCCTCCGGTGT | 59.959 | 55.000 | 0.00 | 0.00 | 39.25 | 4.16 |
273 | 274 | 1.414158 | ATGATGTACTCCCTCCGGTG | 58.586 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
274 | 275 | 2.177233 | ACTATGATGTACTCCCTCCGGT | 59.823 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
275 | 276 | 2.877866 | ACTATGATGTACTCCCTCCGG | 58.122 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
276 | 277 | 5.502079 | AGATACTATGATGTACTCCCTCCG | 58.498 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
277 | 278 | 8.499406 | AGATAGATACTATGATGTACTCCCTCC | 58.501 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
297 | 298 | 9.890629 | AGTTGCACTATGAAACAAATAGATAGA | 57.109 | 29.630 | 2.59 | 0.00 | 32.85 | 1.98 |
301 | 302 | 9.502091 | ACTAAGTTGCACTATGAAACAAATAGA | 57.498 | 29.630 | 2.59 | 0.00 | 32.85 | 1.98 |
304 | 305 | 9.816354 | AAAACTAAGTTGCACTATGAAACAAAT | 57.184 | 25.926 | 2.59 | 0.00 | 0.00 | 2.32 |
305 | 306 | 9.646427 | AAAAACTAAGTTGCACTATGAAACAAA | 57.354 | 25.926 | 2.59 | 0.00 | 0.00 | 2.83 |
306 | 307 | 9.296400 | GAAAAACTAAGTTGCACTATGAAACAA | 57.704 | 29.630 | 2.59 | 0.00 | 0.00 | 2.83 |
307 | 308 | 7.642194 | CGAAAAACTAAGTTGCACTATGAAACA | 59.358 | 33.333 | 2.59 | 0.00 | 0.00 | 2.83 |
308 | 309 | 7.642586 | ACGAAAAACTAAGTTGCACTATGAAAC | 59.357 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
309 | 310 | 7.642194 | CACGAAAAACTAAGTTGCACTATGAAA | 59.358 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
310 | 311 | 7.011576 | TCACGAAAAACTAAGTTGCACTATGAA | 59.988 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
311 | 312 | 6.480651 | TCACGAAAAACTAAGTTGCACTATGA | 59.519 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
312 | 313 | 6.573725 | GTCACGAAAAACTAAGTTGCACTATG | 59.426 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
313 | 314 | 6.482308 | AGTCACGAAAAACTAAGTTGCACTAT | 59.518 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
314 | 315 | 5.813672 | AGTCACGAAAAACTAAGTTGCACTA | 59.186 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
315 | 316 | 4.634443 | AGTCACGAAAAACTAAGTTGCACT | 59.366 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
316 | 317 | 4.905269 | AGTCACGAAAAACTAAGTTGCAC | 58.095 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
317 | 318 | 6.665474 | TTAGTCACGAAAAACTAAGTTGCA | 57.335 | 33.333 | 0.00 | 0.00 | 34.03 | 4.08 |
323 | 324 | 8.598075 | GTTTCACTCTTAGTCACGAAAAACTAA | 58.402 | 33.333 | 0.00 | 0.00 | 36.71 | 2.24 |
366 | 367 | 9.611284 | ATGTATTTAATTTGCACTGCATATACG | 57.389 | 29.630 | 4.10 | 0.00 | 38.76 | 3.06 |
410 | 411 | 4.585955 | ACGAACTTTTGCTCTAGTCTCA | 57.414 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
495 | 496 | 6.744993 | CGAATATTCACGAGATGTCTCCATAG | 59.255 | 42.308 | 15.57 | 0.00 | 39.79 | 2.23 |
615 | 618 | 5.281314 | ACCTTCTAGGAGGCAAGAGAAATA | 58.719 | 41.667 | 17.89 | 0.00 | 40.65 | 1.40 |
663 | 666 | 7.599630 | CCACAATGGTAGATTTTCAATTTGG | 57.400 | 36.000 | 0.00 | 0.00 | 31.35 | 3.28 |
683 | 686 | 6.545666 | AGAAAATCATGTGTTGAGTAACCACA | 59.454 | 34.615 | 0.00 | 0.00 | 37.89 | 4.17 |
808 | 812 | 1.640428 | ACGCTCGTGTTATGTGATGG | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
871 | 875 | 5.888724 | CCTGCGAGAGATAGATATAAAGGGA | 59.111 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
929 | 935 | 0.843309 | TGTGGGAGCAAGGAACAAGA | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1231 | 1248 | 1.003355 | CACCCGCTGGAACATCTGT | 60.003 | 57.895 | 0.00 | 0.00 | 38.20 | 3.41 |
1350 | 1379 | 2.182791 | CTGACAGCGACTGCCGAT | 59.817 | 61.111 | 6.74 | 0.00 | 44.31 | 4.18 |
1415 | 1444 | 2.048127 | GAGTCACGGTCACCAGGC | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1424 | 1453 | 2.358737 | GGGCTGGTTGAGTCACGG | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
1461 | 1490 | 1.176527 | CAATCGGATGCACTTGGGTT | 58.823 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
1472 | 1501 | 2.278596 | CCGTCGCGACAATCGGAT | 60.279 | 61.111 | 35.71 | 0.00 | 44.86 | 4.18 |
1473 | 1502 | 4.485834 | CCCGTCGCGACAATCGGA | 62.486 | 66.667 | 35.71 | 0.00 | 44.86 | 4.55 |
1489 | 1518 | 0.033781 | TTGCTGAATGGTGCTTTGCC | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1490 | 1519 | 1.425412 | CTTGCTGAATGGTGCTTTGC | 58.575 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1563 | 1628 | 1.688735 | CTCTCCTGTTGTGGTGTCTGA | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
1569 | 1634 | 0.179018 | GTTGGCTCTCCTGTTGTGGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1844 | 2668 | 2.795175 | TCTCCATCGCCGAACTAATC | 57.205 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
1850 | 2674 | 1.676678 | CCTCCTTCTCCATCGCCGAA | 61.677 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1957 | 2788 | 6.974932 | AATACTACAGCTGTTCATCAACTG | 57.025 | 37.500 | 27.06 | 6.79 | 43.49 | 3.16 |
2000 | 2831 | 0.730840 | CGGACCGACAATAAAAGCCC | 59.269 | 55.000 | 8.64 | 0.00 | 0.00 | 5.19 |
2014 | 2845 | 3.252458 | AGCACAAGATAAAAACACGGACC | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
2071 | 2902 | 3.571590 | ACCAAGACAAAGGGCATACAAA | 58.428 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2079 | 2910 | 5.713025 | CAAATACATGACCAAGACAAAGGG | 58.287 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
2156 | 2991 | 6.296803 | ACCTTAACCAAGAGTTAGGAAACTG | 58.703 | 40.000 | 0.00 | 0.00 | 46.09 | 3.16 |
2258 | 3095 | 9.494479 | CACTTCATACATGTGCAAACTAAATAG | 57.506 | 33.333 | 9.11 | 0.00 | 0.00 | 1.73 |
2259 | 3096 | 9.225436 | TCACTTCATACATGTGCAAACTAAATA | 57.775 | 29.630 | 9.11 | 0.00 | 31.48 | 1.40 |
2260 | 3097 | 8.109705 | TCACTTCATACATGTGCAAACTAAAT | 57.890 | 30.769 | 9.11 | 0.00 | 31.48 | 1.40 |
2272 | 3109 | 8.822652 | TTAGCATATCACTCACTTCATACATG | 57.177 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
2343 | 3181 | 9.807649 | ATTCATAAGCTGTCCACAAAAATAATC | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
2449 | 3287 | 3.941483 | ACCTGCCACTCTAAATTTCATCG | 59.059 | 43.478 | 0.00 | 0.00 | 0.00 | 3.84 |
2464 | 3302 | 1.429930 | TTTCACTCTACCACCTGCCA | 58.570 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
2467 | 3305 | 5.152623 | TCTGAATTTCACTCTACCACCTG | 57.847 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2471 | 3309 | 4.425772 | TCCCTCTGAATTTCACTCTACCA | 58.574 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
2540 | 3386 | 3.697166 | CCTTACCTGTTGGTTAATGCCT | 58.303 | 45.455 | 0.00 | 0.00 | 46.05 | 4.75 |
2543 | 3389 | 4.677779 | GCATGCCTTACCTGTTGGTTAATG | 60.678 | 45.833 | 6.36 | 0.00 | 46.05 | 1.90 |
2557 | 3403 | 2.099405 | GCTACCCAAAAGCATGCCTTA | 58.901 | 47.619 | 15.66 | 0.00 | 39.83 | 2.69 |
2573 | 3419 | 5.419760 | GGATACGAAAATTTGGGAGCTAC | 57.580 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
2616 | 3462 | 3.424962 | GCGTAGGAGACACAATCAAAAGC | 60.425 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
2620 | 3466 | 1.403647 | CCGCGTAGGAGACACAATCAA | 60.404 | 52.381 | 4.92 | 0.00 | 45.00 | 2.57 |
2635 | 3481 | 1.273606 | CATCATTAGGATCTCCCGCGT | 59.726 | 52.381 | 4.92 | 0.00 | 40.87 | 6.01 |
2692 | 3543 | 2.035442 | GTGCCCTCACTCGCCTTTC | 61.035 | 63.158 | 0.00 | 0.00 | 40.03 | 2.62 |
2719 | 3570 | 4.880120 | GGGTATGTAGTTTGTAAGGGCTTC | 59.120 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
2762 | 3613 | 3.769300 | TCCGATTTGAAGTCCTGATGAGA | 59.231 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2763 | 3614 | 4.128925 | TCCGATTTGAAGTCCTGATGAG | 57.871 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2764 | 3615 | 4.162131 | TCATCCGATTTGAAGTCCTGATGA | 59.838 | 41.667 | 11.11 | 11.11 | 36.09 | 2.92 |
2765 | 3616 | 4.445453 | TCATCCGATTTGAAGTCCTGATG | 58.555 | 43.478 | 7.90 | 7.90 | 0.00 | 3.07 |
2766 | 3617 | 4.760530 | TCATCCGATTTGAAGTCCTGAT | 57.239 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
2801 | 3694 | 8.529424 | TGGAAAATGCATGAGATAATCTTTCT | 57.471 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.