Multiple sequence alignment - TraesCS5D01G045200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G045200 | chr5D | 100.000 | 4098 | 0 | 0 | 1 | 4098 | 44492993 | 44497090 | 0.000000e+00 | 7568.0 |
1 | TraesCS5D01G045200 | chr5D | 81.316 | 760 | 126 | 14 | 2103 | 2854 | 3766507 | 3767258 | 1.630000e-168 | 603.0 |
2 | TraesCS5D01G045200 | chr5D | 84.413 | 571 | 86 | 1 | 1192 | 1759 | 3765226 | 3765796 | 3.580000e-155 | 558.0 |
3 | TraesCS5D01G045200 | chr5D | 85.549 | 173 | 23 | 2 | 1820 | 1991 | 3766293 | 3766464 | 3.250000e-41 | 180.0 |
4 | TraesCS5D01G045200 | chr5B | 93.123 | 3839 | 159 | 40 | 1 | 3763 | 44226918 | 44223109 | 0.000000e+00 | 5529.0 |
5 | TraesCS5D01G045200 | chr5B | 93.490 | 2258 | 114 | 17 | 1165 | 3393 | 43925270 | 43927523 | 0.000000e+00 | 3325.0 |
6 | TraesCS5D01G045200 | chr5B | 94.102 | 1136 | 47 | 11 | 1 | 1127 | 43888307 | 43889431 | 0.000000e+00 | 1709.0 |
7 | TraesCS5D01G045200 | chr5B | 100.000 | 28 | 0 | 0 | 3628 | 3655 | 409054778 | 409054751 | 7.000000e-03 | 52.8 |
8 | TraesCS5D01G045200 | chr5A | 94.137 | 3019 | 128 | 21 | 779 | 3763 | 34908605 | 34911608 | 0.000000e+00 | 4549.0 |
9 | TraesCS5D01G045200 | chr5A | 95.558 | 788 | 26 | 6 | 1 | 786 | 34907674 | 34908454 | 0.000000e+00 | 1253.0 |
10 | TraesCS5D01G045200 | chr5A | 86.667 | 240 | 23 | 4 | 3864 | 4095 | 34911604 | 34911842 | 1.460000e-64 | 257.0 |
11 | TraesCS5D01G045200 | chr5A | 96.460 | 113 | 4 | 0 | 3758 | 3870 | 362173235 | 362173347 | 1.940000e-43 | 187.0 |
12 | TraesCS5D01G045200 | chr2B | 84.444 | 855 | 95 | 20 | 1167 | 1984 | 41865833 | 41864980 | 0.000000e+00 | 808.0 |
13 | TraesCS5D01G045200 | chr2B | 84.073 | 766 | 95 | 18 | 2113 | 2855 | 41864900 | 41864139 | 0.000000e+00 | 713.0 |
14 | TraesCS5D01G045200 | chr2B | 82.222 | 765 | 108 | 20 | 2113 | 2855 | 41848003 | 41847245 | 5.780000e-178 | 634.0 |
15 | TraesCS5D01G045200 | chr2D | 88.380 | 611 | 68 | 1 | 1156 | 1763 | 26560180 | 26559570 | 0.000000e+00 | 732.0 |
16 | TraesCS5D01G045200 | chr2D | 83.594 | 768 | 104 | 14 | 2113 | 2862 | 26559208 | 26558445 | 0.000000e+00 | 701.0 |
17 | TraesCS5D01G045200 | chr2D | 100.000 | 28 | 0 | 0 | 3578 | 3605 | 247098478 | 247098451 | 7.000000e-03 | 52.8 |
18 | TraesCS5D01G045200 | chr2A | 87.765 | 613 | 71 | 2 | 1155 | 1764 | 28809660 | 28809049 | 0.000000e+00 | 713.0 |
19 | TraesCS5D01G045200 | chr2A | 83.528 | 771 | 103 | 16 | 2113 | 2862 | 28808722 | 28807955 | 0.000000e+00 | 699.0 |
20 | TraesCS5D01G045200 | chr2A | 92.913 | 127 | 6 | 3 | 3746 | 3869 | 28208327 | 28208201 | 9.050000e-42 | 182.0 |
21 | TraesCS5D01G045200 | chrUn | 80.731 | 602 | 96 | 11 | 1176 | 1758 | 87285401 | 87286001 | 6.250000e-123 | 451.0 |
22 | TraesCS5D01G045200 | chrUn | 79.853 | 546 | 96 | 5 | 2117 | 2649 | 87283795 | 87283251 | 1.790000e-103 | 387.0 |
23 | TraesCS5D01G045200 | chrUn | 100.000 | 28 | 0 | 0 | 3628 | 3655 | 101887456 | 101887429 | 7.000000e-03 | 52.8 |
24 | TraesCS5D01G045200 | chr7B | 80.565 | 602 | 97 | 13 | 1176 | 1758 | 680269222 | 680268622 | 2.910000e-121 | 446.0 |
25 | TraesCS5D01G045200 | chr7A | 97.297 | 111 | 3 | 0 | 3760 | 3870 | 133053229 | 133053339 | 5.410000e-44 | 189.0 |
26 | TraesCS5D01G045200 | chr4B | 97.297 | 111 | 3 | 0 | 3760 | 3870 | 528805630 | 528805520 | 5.410000e-44 | 189.0 |
27 | TraesCS5D01G045200 | chr7D | 95.000 | 120 | 5 | 1 | 3750 | 3869 | 21093598 | 21093716 | 1.940000e-43 | 187.0 |
28 | TraesCS5D01G045200 | chr4A | 96.429 | 112 | 4 | 0 | 3759 | 3870 | 593739131 | 593739020 | 7.000000e-43 | 185.0 |
29 | TraesCS5D01G045200 | chr4A | 93.443 | 122 | 7 | 1 | 3760 | 3881 | 594031546 | 594031426 | 3.250000e-41 | 180.0 |
30 | TraesCS5D01G045200 | chr6A | 95.614 | 114 | 4 | 1 | 3756 | 3869 | 250834625 | 250834513 | 9.050000e-42 | 182.0 |
31 | TraesCS5D01G045200 | chr1D | 94.167 | 120 | 6 | 1 | 3749 | 3867 | 247520946 | 247521065 | 9.050000e-42 | 182.0 |
32 | TraesCS5D01G045200 | chr3D | 96.970 | 33 | 1 | 0 | 3621 | 3653 | 406691208 | 406691240 | 5.720000e-04 | 56.5 |
33 | TraesCS5D01G045200 | chr1A | 100.000 | 28 | 0 | 0 | 3628 | 3655 | 558299883 | 558299856 | 7.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G045200 | chr5D | 44492993 | 44497090 | 4097 | False | 7568.000000 | 7568 | 100.000000 | 1 | 4098 | 1 | chr5D.!!$F1 | 4097 |
1 | TraesCS5D01G045200 | chr5D | 3765226 | 3767258 | 2032 | False | 447.000000 | 603 | 83.759333 | 1192 | 2854 | 3 | chr5D.!!$F2 | 1662 |
2 | TraesCS5D01G045200 | chr5B | 44223109 | 44226918 | 3809 | True | 5529.000000 | 5529 | 93.123000 | 1 | 3763 | 1 | chr5B.!!$R1 | 3762 |
3 | TraesCS5D01G045200 | chr5B | 43925270 | 43927523 | 2253 | False | 3325.000000 | 3325 | 93.490000 | 1165 | 3393 | 1 | chr5B.!!$F2 | 2228 |
4 | TraesCS5D01G045200 | chr5B | 43888307 | 43889431 | 1124 | False | 1709.000000 | 1709 | 94.102000 | 1 | 1127 | 1 | chr5B.!!$F1 | 1126 |
5 | TraesCS5D01G045200 | chr5A | 34907674 | 34911842 | 4168 | False | 2019.666667 | 4549 | 92.120667 | 1 | 4095 | 3 | chr5A.!!$F2 | 4094 |
6 | TraesCS5D01G045200 | chr2B | 41864139 | 41865833 | 1694 | True | 760.500000 | 808 | 84.258500 | 1167 | 2855 | 2 | chr2B.!!$R2 | 1688 |
7 | TraesCS5D01G045200 | chr2B | 41847245 | 41848003 | 758 | True | 634.000000 | 634 | 82.222000 | 2113 | 2855 | 1 | chr2B.!!$R1 | 742 |
8 | TraesCS5D01G045200 | chr2D | 26558445 | 26560180 | 1735 | True | 716.500000 | 732 | 85.987000 | 1156 | 2862 | 2 | chr2D.!!$R2 | 1706 |
9 | TraesCS5D01G045200 | chr2A | 28807955 | 28809660 | 1705 | True | 706.000000 | 713 | 85.646500 | 1155 | 2862 | 2 | chr2A.!!$R2 | 1707 |
10 | TraesCS5D01G045200 | chrUn | 87285401 | 87286001 | 600 | False | 451.000000 | 451 | 80.731000 | 1176 | 1758 | 1 | chrUn.!!$F1 | 582 |
11 | TraesCS5D01G045200 | chrUn | 87283251 | 87283795 | 544 | True | 387.000000 | 387 | 79.853000 | 2117 | 2649 | 1 | chrUn.!!$R1 | 532 |
12 | TraesCS5D01G045200 | chr7B | 680268622 | 680269222 | 600 | True | 446.000000 | 446 | 80.565000 | 1176 | 1758 | 1 | chr7B.!!$R1 | 582 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
182 | 187 | 0.109179 | TGGTTTGCATCGCTGATTGC | 60.109 | 50.000 | 0.00 | 0.0 | 38.57 | 3.56 | F |
974 | 1180 | 0.928229 | GTGTAAAGCCGGCATCTACG | 59.072 | 55.000 | 31.54 | 0.0 | 0.00 | 3.51 | F |
2303 | 3009 | 1.153647 | CGCTGGCTACGAATCCACA | 60.154 | 57.895 | 0.00 | 0.0 | 0.00 | 4.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1024 | 1235 | 1.024046 | TTACCTCGCGCATTGCATGT | 61.024 | 50.000 | 8.75 | 0.65 | 46.97 | 3.21 | R |
2689 | 3418 | 2.091432 | TCGTTGACAATTGATGCGTACG | 59.909 | 45.455 | 13.59 | 11.84 | 0.00 | 3.67 | R |
3460 | 4230 | 2.231478 | CGGACACATCTGTAACTGTCCT | 59.769 | 50.000 | 12.59 | 0.00 | 42.45 | 3.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
131 | 136 | 8.365399 | TGATGATTCGTATTTGTCATTCCTAC | 57.635 | 34.615 | 0.00 | 0.00 | 31.86 | 3.18 |
156 | 161 | 2.540101 | GCGCTTACTGGCTGTAATAGTG | 59.460 | 50.000 | 15.96 | 13.00 | 40.02 | 2.74 |
182 | 187 | 0.109179 | TGGTTTGCATCGCTGATTGC | 60.109 | 50.000 | 0.00 | 0.00 | 38.57 | 3.56 |
244 | 252 | 3.196901 | TCTCTTATGCCGCCTCAAGTTTA | 59.803 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
245 | 253 | 4.130118 | CTCTTATGCCGCCTCAAGTTTAT | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
258 | 266 | 6.146021 | GCCTCAAGTTTATTCCACATTGTTTG | 59.854 | 38.462 | 0.00 | 0.00 | 0.00 | 2.93 |
268 | 276 | 4.129380 | TCCACATTGTTTGTCTGAGTCAG | 58.871 | 43.478 | 14.36 | 14.36 | 36.00 | 3.51 |
293 | 301 | 7.661437 | AGTGTTTGCAGATCACAACTCTAAATA | 59.339 | 33.333 | 16.20 | 0.00 | 34.94 | 1.40 |
323 | 332 | 6.762661 | CAGTTTTGAAGATTTTGGACACCAAT | 59.237 | 34.615 | 4.03 | 0.00 | 43.55 | 3.16 |
449 | 458 | 1.663643 | GTGTGTGATTGACGTGTGTGT | 59.336 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
490 | 499 | 4.630940 | GGAGAAGAGTTGAGCTGAAAGATG | 59.369 | 45.833 | 0.00 | 0.00 | 34.07 | 2.90 |
491 | 500 | 5.477510 | GAGAAGAGTTGAGCTGAAAGATGA | 58.522 | 41.667 | 0.00 | 0.00 | 34.07 | 2.92 |
492 | 501 | 6.052405 | AGAAGAGTTGAGCTGAAAGATGAT | 57.948 | 37.500 | 0.00 | 0.00 | 34.07 | 2.45 |
974 | 1180 | 0.928229 | GTGTAAAGCCGGCATCTACG | 59.072 | 55.000 | 31.54 | 0.00 | 0.00 | 3.51 |
1086 | 1301 | 2.725203 | TTTGTTCCCGTCTGCCTCCG | 62.725 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1161 | 1377 | 1.476891 | CGCTTCTCCAGGTACTAGCAA | 59.523 | 52.381 | 0.00 | 0.00 | 36.02 | 3.91 |
1282 | 1501 | 4.807039 | GCCGACGCGTGGTACCAT | 62.807 | 66.667 | 20.70 | 0.53 | 0.00 | 3.55 |
1306 | 1543 | 1.674057 | CTTCTTCCTCAGGCACGGT | 59.326 | 57.895 | 0.00 | 0.00 | 0.00 | 4.83 |
1802 | 2366 | 5.221722 | TGTGCTTTTCCTCTCTGTCAATAGT | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
1803 | 2367 | 5.121454 | GTGCTTTTCCTCTCTGTCAATAGTG | 59.879 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1804 | 2368 | 5.012046 | TGCTTTTCCTCTCTGTCAATAGTGA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1806 | 2370 | 6.597280 | GCTTTTCCTCTCTGTCAATAGTGAAT | 59.403 | 38.462 | 0.00 | 0.00 | 34.87 | 2.57 |
1807 | 2371 | 7.766278 | GCTTTTCCTCTCTGTCAATAGTGAATA | 59.234 | 37.037 | 0.00 | 0.00 | 34.87 | 1.75 |
1808 | 2372 | 9.311916 | CTTTTCCTCTCTGTCAATAGTGAATAG | 57.688 | 37.037 | 0.00 | 0.00 | 34.87 | 1.73 |
2038 | 2739 | 4.395959 | TGGATCGGGTTACACTATCAAC | 57.604 | 45.455 | 1.66 | 0.00 | 0.00 | 3.18 |
2303 | 3009 | 1.153647 | CGCTGGCTACGAATCCACA | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
2654 | 3383 | 3.758554 | ACAGATGGGATGTAAGTTGTTGC | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
2689 | 3418 | 4.337274 | TGATCATGGATGCAACTTCATCAC | 59.663 | 41.667 | 0.00 | 0.00 | 43.44 | 3.06 |
2887 | 3646 | 7.865706 | ACTTCAAATCCTATGTAATCACCAC | 57.134 | 36.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2945 | 3706 | 8.481974 | TGTCTTGGCATTTGATTGATTTATTG | 57.518 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
2986 | 3747 | 5.185454 | CAGTTGATCCTAGTTTGCCATACA | 58.815 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3010 | 3771 | 4.842531 | TGATTGTTTCAGATGGGAGCTA | 57.157 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
3043 | 3804 | 3.194861 | TGCGAAGATCAATTACCTTCCG | 58.805 | 45.455 | 0.00 | 0.00 | 34.40 | 4.30 |
3056 | 3817 | 4.966787 | TTCCGCACCCAAGGCCAC | 62.967 | 66.667 | 5.01 | 0.00 | 0.00 | 5.01 |
3107 | 3868 | 0.382158 | TAGAGCTTGACGGAGATGCG | 59.618 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
3224 | 3989 | 9.699410 | TCCTGGAAATGACATTATCTTTGTAAT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
3254 | 4019 | 4.518211 | TGGGCATGTTGCTTTTAAATTTGG | 59.482 | 37.500 | 0.00 | 0.00 | 44.28 | 3.28 |
3258 | 4023 | 6.648725 | GGCATGTTGCTTTTAAATTTGGACTA | 59.351 | 34.615 | 0.00 | 0.00 | 44.28 | 2.59 |
3288 | 4058 | 7.015389 | GGGACAAGACCATTATAAGCTACTAGT | 59.985 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
3326 | 4096 | 4.202441 | GAGAAGGCCATTTATGAAGCTCA | 58.798 | 43.478 | 5.01 | 0.00 | 0.00 | 4.26 |
3411 | 4181 | 5.023452 | TGACCTTGGAGTCACTATATGTGT | 58.977 | 41.667 | 0.00 | 0.00 | 46.27 | 3.72 |
3412 | 4182 | 5.105351 | TGACCTTGGAGTCACTATATGTGTG | 60.105 | 44.000 | 0.00 | 4.82 | 46.27 | 3.82 |
3413 | 4183 | 4.122776 | CCTTGGAGTCACTATATGTGTGC | 58.877 | 47.826 | 5.99 | 2.99 | 46.27 | 4.57 |
3450 | 4220 | 0.320421 | GCAAGCTCCCGTGTGAAGTA | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3457 | 4227 | 3.427773 | GCTCCCGTGTGAAGTAACTCTAG | 60.428 | 52.174 | 0.00 | 0.00 | 0.00 | 2.43 |
3460 | 4230 | 5.748402 | TCCCGTGTGAAGTAACTCTAGATA | 58.252 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
3463 | 4233 | 5.821470 | CCGTGTGAAGTAACTCTAGATAGGA | 59.179 | 44.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3465 | 4235 | 6.315642 | CGTGTGAAGTAACTCTAGATAGGACA | 59.684 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
3467 | 4237 | 7.337436 | GTGTGAAGTAACTCTAGATAGGACAGT | 59.663 | 40.741 | 0.00 | 0.00 | 0.00 | 3.55 |
3606 | 4377 | 6.350696 | CCCTCCGATCCATATTAATTGTCGTA | 60.351 | 42.308 | 0.00 | 0.00 | 0.00 | 3.43 |
3646 | 4417 | 6.054941 | AGTGTGCGACAATTAATATGGATCA | 58.945 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3657 | 4428 | 9.511272 | CAATTAATATGGATCAGATGGAGTTGA | 57.489 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3763 | 4534 | 7.316640 | AGCACCGAGATAATATTCATGTACTC | 58.683 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3764 | 4535 | 6.531948 | GCACCGAGATAATATTCATGTACTCC | 59.468 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
3765 | 4536 | 7.036220 | CACCGAGATAATATTCATGTACTCCC | 58.964 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3766 | 4537 | 6.954684 | ACCGAGATAATATTCATGTACTCCCT | 59.045 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
3767 | 4538 | 7.122948 | ACCGAGATAATATTCATGTACTCCCTC | 59.877 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
3768 | 4539 | 7.416890 | CCGAGATAATATTCATGTACTCCCTCC | 60.417 | 44.444 | 0.00 | 0.00 | 0.00 | 4.30 |
3769 | 4540 | 7.411486 | AGATAATATTCATGTACTCCCTCCG | 57.589 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3770 | 4541 | 6.954684 | AGATAATATTCATGTACTCCCTCCGT | 59.045 | 38.462 | 0.00 | 0.00 | 0.00 | 4.69 |
3771 | 4542 | 5.888982 | AATATTCATGTACTCCCTCCGTT | 57.111 | 39.130 | 0.00 | 0.00 | 0.00 | 4.44 |
3772 | 4543 | 3.821421 | ATTCATGTACTCCCTCCGTTC | 57.179 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
3773 | 4544 | 2.526888 | TCATGTACTCCCTCCGTTCT | 57.473 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3774 | 4545 | 2.100197 | TCATGTACTCCCTCCGTTCTG | 58.900 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
3775 | 4546 | 2.100197 | CATGTACTCCCTCCGTTCTGA | 58.900 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
3776 | 4547 | 2.297698 | TGTACTCCCTCCGTTCTGAA | 57.702 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3777 | 4548 | 2.816411 | TGTACTCCCTCCGTTCTGAAT | 58.184 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
3778 | 4549 | 3.170717 | TGTACTCCCTCCGTTCTGAATT | 58.829 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
3779 | 4550 | 4.346730 | TGTACTCCCTCCGTTCTGAATTA | 58.653 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3780 | 4551 | 4.960469 | TGTACTCCCTCCGTTCTGAATTAT | 59.040 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
3781 | 4552 | 5.424252 | TGTACTCCCTCCGTTCTGAATTATT | 59.576 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3782 | 4553 | 5.437191 | ACTCCCTCCGTTCTGAATTATTT | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3783 | 4554 | 5.186198 | ACTCCCTCCGTTCTGAATTATTTG | 58.814 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
3784 | 4555 | 5.174037 | TCCCTCCGTTCTGAATTATTTGT | 57.826 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
3785 | 4556 | 5.183228 | TCCCTCCGTTCTGAATTATTTGTC | 58.817 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3786 | 4557 | 4.034048 | CCCTCCGTTCTGAATTATTTGTCG | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 4.35 |
3787 | 4558 | 4.494199 | CCTCCGTTCTGAATTATTTGTCGC | 60.494 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
3788 | 4559 | 3.997681 | TCCGTTCTGAATTATTTGTCGCA | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
3789 | 4560 | 4.092821 | TCCGTTCTGAATTATTTGTCGCAG | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 5.18 |
3790 | 4561 | 4.334443 | CGTTCTGAATTATTTGTCGCAGG | 58.666 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
3791 | 4562 | 4.142902 | CGTTCTGAATTATTTGTCGCAGGT | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
3792 | 4563 | 5.062934 | CGTTCTGAATTATTTGTCGCAGGTA | 59.937 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
3793 | 4564 | 6.238103 | CGTTCTGAATTATTTGTCGCAGGTAT | 60.238 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
3794 | 4565 | 6.603237 | TCTGAATTATTTGTCGCAGGTATG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 2.39 |
3795 | 4566 | 5.527214 | TCTGAATTATTTGTCGCAGGTATGG | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3796 | 4567 | 5.432645 | TGAATTATTTGTCGCAGGTATGGA | 58.567 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
3797 | 4568 | 6.061441 | TGAATTATTTGTCGCAGGTATGGAT | 58.939 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3798 | 4569 | 5.947228 | ATTATTTGTCGCAGGTATGGATG | 57.053 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
3799 | 4570 | 2.779755 | TTTGTCGCAGGTATGGATGT | 57.220 | 45.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3800 | 4571 | 3.897141 | TTTGTCGCAGGTATGGATGTA | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
3801 | 4572 | 4.415881 | TTTGTCGCAGGTATGGATGTAT | 57.584 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
3802 | 4573 | 3.660501 | TGTCGCAGGTATGGATGTATC | 57.339 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
3803 | 4574 | 3.230976 | TGTCGCAGGTATGGATGTATCT | 58.769 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
3804 | 4575 | 4.403734 | TGTCGCAGGTATGGATGTATCTA | 58.596 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
3805 | 4576 | 4.459337 | TGTCGCAGGTATGGATGTATCTAG | 59.541 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
3806 | 4577 | 4.700692 | GTCGCAGGTATGGATGTATCTAGA | 59.299 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
3807 | 4578 | 5.358442 | GTCGCAGGTATGGATGTATCTAGAT | 59.642 | 44.000 | 10.73 | 10.73 | 0.00 | 1.98 |
3808 | 4579 | 5.358160 | TCGCAGGTATGGATGTATCTAGATG | 59.642 | 44.000 | 15.79 | 0.00 | 0.00 | 2.90 |
3809 | 4580 | 5.126222 | CGCAGGTATGGATGTATCTAGATGT | 59.874 | 44.000 | 15.79 | 1.25 | 0.00 | 3.06 |
3810 | 4581 | 6.318900 | CGCAGGTATGGATGTATCTAGATGTA | 59.681 | 42.308 | 15.79 | 4.44 | 0.00 | 2.29 |
3811 | 4582 | 7.013750 | CGCAGGTATGGATGTATCTAGATGTAT | 59.986 | 40.741 | 15.79 | 9.11 | 0.00 | 2.29 |
3812 | 4583 | 8.700051 | GCAGGTATGGATGTATCTAGATGTATT | 58.300 | 37.037 | 15.79 | 0.00 | 0.00 | 1.89 |
3838 | 4609 | 9.547753 | TTTAGTTCTAGATACATCCATTTCTGC | 57.452 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
3839 | 4610 | 6.219473 | AGTTCTAGATACATCCATTTCTGCG | 58.781 | 40.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3840 | 4611 | 6.040955 | AGTTCTAGATACATCCATTTCTGCGA | 59.959 | 38.462 | 0.00 | 0.00 | 0.00 | 5.10 |
3841 | 4612 | 6.596309 | TCTAGATACATCCATTTCTGCGAT | 57.404 | 37.500 | 0.00 | 0.00 | 0.00 | 4.58 |
3842 | 4613 | 6.393171 | TCTAGATACATCCATTTCTGCGATG | 58.607 | 40.000 | 0.00 | 0.00 | 36.72 | 3.84 |
3843 | 4614 | 5.219343 | AGATACATCCATTTCTGCGATGA | 57.781 | 39.130 | 3.44 | 0.00 | 35.42 | 2.92 |
3844 | 4615 | 5.236282 | AGATACATCCATTTCTGCGATGAG | 58.764 | 41.667 | 3.44 | 0.00 | 35.42 | 2.90 |
3845 | 4616 | 3.272574 | ACATCCATTTCTGCGATGAGT | 57.727 | 42.857 | 3.44 | 0.00 | 35.42 | 3.41 |
3846 | 4617 | 4.406648 | ACATCCATTTCTGCGATGAGTA | 57.593 | 40.909 | 3.44 | 0.00 | 35.42 | 2.59 |
3847 | 4618 | 4.769688 | ACATCCATTTCTGCGATGAGTAA | 58.230 | 39.130 | 3.44 | 0.00 | 35.42 | 2.24 |
3848 | 4619 | 5.371526 | ACATCCATTTCTGCGATGAGTAAT | 58.628 | 37.500 | 3.44 | 0.00 | 35.42 | 1.89 |
3849 | 4620 | 5.824624 | ACATCCATTTCTGCGATGAGTAATT | 59.175 | 36.000 | 3.44 | 0.00 | 35.42 | 1.40 |
3850 | 4621 | 6.319658 | ACATCCATTTCTGCGATGAGTAATTT | 59.680 | 34.615 | 3.44 | 0.00 | 35.42 | 1.82 |
3851 | 4622 | 6.122850 | TCCATTTCTGCGATGAGTAATTTG | 57.877 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
3852 | 4623 | 5.879777 | TCCATTTCTGCGATGAGTAATTTGA | 59.120 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3853 | 4624 | 6.374053 | TCCATTTCTGCGATGAGTAATTTGAA | 59.626 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
3854 | 4625 | 7.028962 | CCATTTCTGCGATGAGTAATTTGAAA | 58.971 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
3855 | 4626 | 7.008628 | CCATTTCTGCGATGAGTAATTTGAAAC | 59.991 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
3856 | 4627 | 5.203358 | TCTGCGATGAGTAATTTGAAACG | 57.797 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
3857 | 4628 | 4.092821 | TCTGCGATGAGTAATTTGAAACGG | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
3858 | 4629 | 3.997681 | TGCGATGAGTAATTTGAAACGGA | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
3859 | 4630 | 4.092821 | TGCGATGAGTAATTTGAAACGGAG | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3860 | 4631 | 4.494199 | GCGATGAGTAATTTGAAACGGAGG | 60.494 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3861 | 4632 | 4.034048 | CGATGAGTAATTTGAAACGGAGGG | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3862 | 4633 | 4.627284 | TGAGTAATTTGAAACGGAGGGA | 57.373 | 40.909 | 0.00 | 0.00 | 0.00 | 4.20 |
3863 | 4634 | 4.575885 | TGAGTAATTTGAAACGGAGGGAG | 58.424 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3864 | 4635 | 4.041198 | TGAGTAATTTGAAACGGAGGGAGT | 59.959 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3865 | 4636 | 5.246656 | TGAGTAATTTGAAACGGAGGGAGTA | 59.753 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3866 | 4637 | 5.485620 | AGTAATTTGAAACGGAGGGAGTAC | 58.514 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
3867 | 4638 | 4.635699 | AATTTGAAACGGAGGGAGTACT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 2.73 |
3943 | 4714 | 6.820656 | GTGGCTGAATATATGTTCATAGAGGG | 59.179 | 42.308 | 14.42 | 4.38 | 37.47 | 4.30 |
3960 | 4731 | 8.455682 | TCATAGAGGGTTTAAAACTAAAATGCG | 58.544 | 33.333 | 2.72 | 0.00 | 0.00 | 4.73 |
3963 | 4734 | 8.570068 | AGAGGGTTTAAAACTAAAATGCGATA | 57.430 | 30.769 | 2.72 | 0.00 | 0.00 | 2.92 |
3964 | 4735 | 9.016438 | AGAGGGTTTAAAACTAAAATGCGATAA | 57.984 | 29.630 | 2.72 | 0.00 | 0.00 | 1.75 |
3965 | 4736 | 9.628746 | GAGGGTTTAAAACTAAAATGCGATAAA | 57.371 | 29.630 | 2.72 | 0.00 | 0.00 | 1.40 |
3981 | 4759 | 4.566759 | GCGATAAAAGGAAAGGGAAAATGC | 59.433 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
3987 | 4765 | 7.984422 | AAAAGGAAAGGGAAAATGCAATAAG | 57.016 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3995 | 4773 | 6.881570 | AGGGAAAATGCAATAAGAGGAAATG | 58.118 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4095 | 4873 | 8.446599 | AGAACAATAGGAAGAACGAAAAGAAA | 57.553 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
4096 | 4874 | 8.343366 | AGAACAATAGGAAGAACGAAAAGAAAC | 58.657 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
4097 | 4875 | 7.562454 | ACAATAGGAAGAACGAAAAGAAACA | 57.438 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
182 | 187 | 0.390860 | ATGCGTCCTAGCTGGCTTAG | 59.609 | 55.000 | 0.00 | 0.00 | 38.13 | 2.18 |
244 | 252 | 5.132502 | TGACTCAGACAAACAATGTGGAAT | 58.867 | 37.500 | 0.00 | 0.00 | 44.12 | 3.01 |
245 | 253 | 4.522114 | TGACTCAGACAAACAATGTGGAA | 58.478 | 39.130 | 0.00 | 0.00 | 44.12 | 3.53 |
258 | 266 | 2.826428 | TCTGCAAACACTGACTCAGAC | 58.174 | 47.619 | 13.25 | 0.00 | 35.18 | 3.51 |
268 | 276 | 5.673337 | TTAGAGTTGTGATCTGCAAACAC | 57.327 | 39.130 | 9.61 | 9.61 | 35.45 | 3.32 |
293 | 301 | 7.492344 | GTGTCCAAAATCTTCAAAACTGTCAAT | 59.508 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
315 | 324 | 6.238484 | GCTGGTGATCTACAAATATTGGTGTC | 60.238 | 42.308 | 5.69 | 2.52 | 34.12 | 3.67 |
323 | 332 | 5.826208 | TCGAGTAGCTGGTGATCTACAAATA | 59.174 | 40.000 | 0.00 | 0.00 | 38.05 | 1.40 |
449 | 458 | 9.231297 | CTCTTCTCCCATCATAAACAGTTAAAA | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
490 | 499 | 4.023365 | GGTTTCTGCATTAGCCTCATCATC | 60.023 | 45.833 | 0.00 | 0.00 | 41.13 | 2.92 |
491 | 500 | 3.887716 | GGTTTCTGCATTAGCCTCATCAT | 59.112 | 43.478 | 0.00 | 0.00 | 41.13 | 2.45 |
492 | 501 | 3.282021 | GGTTTCTGCATTAGCCTCATCA | 58.718 | 45.455 | 0.00 | 0.00 | 41.13 | 3.07 |
974 | 1180 | 3.684788 | ACGTTGTGTGATTATTCTGGCTC | 59.315 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
1022 | 1233 | 2.466982 | CCTCGCGCATTGCATGTCT | 61.467 | 57.895 | 8.75 | 0.00 | 46.97 | 3.41 |
1024 | 1235 | 1.024046 | TTACCTCGCGCATTGCATGT | 61.024 | 50.000 | 8.75 | 0.65 | 46.97 | 3.21 |
1086 | 1301 | 2.384203 | GGCTGATCCGTTACTGTGC | 58.616 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
1161 | 1377 | 2.224606 | CCACTGCTATCGCCATTGATT | 58.775 | 47.619 | 0.00 | 0.00 | 34.43 | 2.57 |
1281 | 1500 | 1.222936 | CTGAGGAAGAAGGCGGCAT | 59.777 | 57.895 | 13.08 | 0.00 | 0.00 | 4.40 |
1282 | 1501 | 2.665000 | CTGAGGAAGAAGGCGGCA | 59.335 | 61.111 | 13.08 | 0.00 | 0.00 | 5.69 |
1802 | 2366 | 6.602803 | TGCAATTTAAGGAGCATCACTATTCA | 59.397 | 34.615 | 0.00 | 0.00 | 36.25 | 2.57 |
1803 | 2367 | 6.914757 | GTGCAATTTAAGGAGCATCACTATTC | 59.085 | 38.462 | 0.00 | 0.00 | 39.43 | 1.75 |
1804 | 2368 | 6.377996 | TGTGCAATTTAAGGAGCATCACTATT | 59.622 | 34.615 | 0.00 | 0.00 | 39.43 | 1.73 |
1806 | 2370 | 5.252547 | TGTGCAATTTAAGGAGCATCACTA | 58.747 | 37.500 | 0.00 | 0.00 | 39.43 | 2.74 |
1807 | 2371 | 4.081406 | TGTGCAATTTAAGGAGCATCACT | 58.919 | 39.130 | 0.00 | 0.00 | 39.43 | 3.41 |
1808 | 2372 | 4.418392 | CTGTGCAATTTAAGGAGCATCAC | 58.582 | 43.478 | 0.00 | 0.00 | 39.43 | 3.06 |
1997 | 2690 | 6.993786 | TCCATTTACTGCATCGTATGAAAA | 57.006 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1998 | 2691 | 6.073819 | CGATCCATTTACTGCATCGTATGAAA | 60.074 | 38.462 | 0.00 | 0.00 | 33.29 | 2.69 |
2006 | 2699 | 2.851195 | ACCCGATCCATTTACTGCATC | 58.149 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
2012 | 2705 | 6.518493 | TGATAGTGTAACCCGATCCATTTAC | 58.482 | 40.000 | 0.00 | 0.00 | 37.80 | 2.01 |
2038 | 2739 | 6.016777 | AGCAAACAAATTACCTTGACTCTCTG | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
2303 | 3009 | 2.827190 | CACATGATGGCGCTGGCT | 60.827 | 61.111 | 7.64 | 0.00 | 39.81 | 4.75 |
2654 | 3383 | 6.039382 | TGCATCCATGATCAATGAGAGAAAAG | 59.961 | 38.462 | 9.57 | 0.00 | 38.72 | 2.27 |
2689 | 3418 | 2.091432 | TCGTTGACAATTGATGCGTACG | 59.909 | 45.455 | 13.59 | 11.84 | 0.00 | 3.67 |
2885 | 3644 | 8.343366 | CAAATGAATTCTACTGATCTCATGGTG | 58.657 | 37.037 | 7.05 | 0.00 | 29.69 | 4.17 |
2887 | 3646 | 7.228906 | AGCAAATGAATTCTACTGATCTCATGG | 59.771 | 37.037 | 7.05 | 0.00 | 29.69 | 3.66 |
2921 | 3681 | 8.483307 | ACAATAAATCAATCAAATGCCAAGAC | 57.517 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
2965 | 3726 | 6.509418 | TTTGTATGGCAAACTAGGATCAAC | 57.491 | 37.500 | 0.00 | 0.00 | 41.68 | 3.18 |
2986 | 3747 | 5.021458 | AGCTCCCATCTGAAACAATCATTT | 58.979 | 37.500 | 0.00 | 0.00 | 37.44 | 2.32 |
3010 | 3771 | 4.711399 | TGATCTTCGCATCAGGATTCAAT | 58.289 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3043 | 3804 | 4.284550 | TCCAGTGGCCTTGGGTGC | 62.285 | 66.667 | 21.89 | 0.00 | 36.34 | 5.01 |
3098 | 3859 | 2.900122 | AAACATTGAACGCATCTCCG | 57.100 | 45.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3229 | 3994 | 6.294620 | CCAAATTTAAAAGCAACATGCCCATT | 60.295 | 34.615 | 0.00 | 0.00 | 46.52 | 3.16 |
3239 | 4004 | 7.070074 | TCCCTTGTAGTCCAAATTTAAAAGCAA | 59.930 | 33.333 | 0.00 | 0.00 | 31.20 | 3.91 |
3254 | 4019 | 3.983044 | ATGGTCTTGTCCCTTGTAGTC | 57.017 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
3258 | 4023 | 5.044846 | AGCTTATAATGGTCTTGTCCCTTGT | 60.045 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3326 | 4096 | 5.047802 | CCATTCAACCAAATGTACTCAAGCT | 60.048 | 40.000 | 0.00 | 0.00 | 35.31 | 3.74 |
3411 | 4181 | 3.244526 | TGCCTATCTTTGACTTGTGAGCA | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
3412 | 4182 | 3.338249 | TGCCTATCTTTGACTTGTGAGC | 58.662 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
3413 | 4183 | 4.142730 | GCTTGCCTATCTTTGACTTGTGAG | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
3450 | 4220 | 8.056400 | ACATCTGTAACTGTCCTATCTAGAGTT | 58.944 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
3457 | 4227 | 5.593010 | GGACACATCTGTAACTGTCCTATC | 58.407 | 45.833 | 8.19 | 0.00 | 41.67 | 2.08 |
3460 | 4230 | 2.231478 | CGGACACATCTGTAACTGTCCT | 59.769 | 50.000 | 12.59 | 0.00 | 42.45 | 3.85 |
3463 | 4233 | 3.509967 | TGATCGGACACATCTGTAACTGT | 59.490 | 43.478 | 0.00 | 0.00 | 32.47 | 3.55 |
3465 | 4235 | 4.801330 | TTGATCGGACACATCTGTAACT | 57.199 | 40.909 | 0.00 | 0.00 | 32.47 | 2.24 |
3467 | 4237 | 6.215495 | TGTATTGATCGGACACATCTGTAA | 57.785 | 37.500 | 0.00 | 0.00 | 32.47 | 2.41 |
3579 | 4350 | 4.849810 | ACAATTAATATGGATCGGAGGGGA | 59.150 | 41.667 | 0.00 | 0.00 | 0.00 | 4.81 |
3580 | 4351 | 5.179452 | ACAATTAATATGGATCGGAGGGG | 57.821 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3606 | 4377 | 7.171848 | TGTCGCACACTTATTACAACTTTGTAT | 59.828 | 33.333 | 2.71 | 0.00 | 42.66 | 2.29 |
3619 | 4390 | 8.621532 | ATCCATATTAATTGTCGCACACTTAT | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
3746 | 4517 | 7.171630 | ACGGAGGGAGTACATGAATATTATC | 57.828 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
3763 | 4534 | 4.034048 | CGACAAATAATTCAGAACGGAGGG | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3764 | 4535 | 4.494199 | GCGACAAATAATTCAGAACGGAGG | 60.494 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3765 | 4536 | 4.092821 | TGCGACAAATAATTCAGAACGGAG | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3766 | 4537 | 3.997681 | TGCGACAAATAATTCAGAACGGA | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
3767 | 4538 | 4.334443 | CTGCGACAAATAATTCAGAACGG | 58.666 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
3768 | 4539 | 4.142902 | ACCTGCGACAAATAATTCAGAACG | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
3769 | 4540 | 5.296813 | ACCTGCGACAAATAATTCAGAAC | 57.703 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
3770 | 4541 | 6.038161 | CCATACCTGCGACAAATAATTCAGAA | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3771 | 4542 | 5.527214 | CCATACCTGCGACAAATAATTCAGA | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3772 | 4543 | 5.527214 | TCCATACCTGCGACAAATAATTCAG | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3773 | 4544 | 5.432645 | TCCATACCTGCGACAAATAATTCA | 58.567 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3774 | 4545 | 6.017109 | ACATCCATACCTGCGACAAATAATTC | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
3775 | 4546 | 5.827797 | ACATCCATACCTGCGACAAATAATT | 59.172 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3776 | 4547 | 5.376625 | ACATCCATACCTGCGACAAATAAT | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
3777 | 4548 | 4.776349 | ACATCCATACCTGCGACAAATAA | 58.224 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3778 | 4549 | 4.415881 | ACATCCATACCTGCGACAAATA | 57.584 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
3779 | 4550 | 3.281727 | ACATCCATACCTGCGACAAAT | 57.718 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
3780 | 4551 | 2.779755 | ACATCCATACCTGCGACAAA | 57.220 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3781 | 4552 | 3.641436 | AGATACATCCATACCTGCGACAA | 59.359 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3782 | 4553 | 3.230976 | AGATACATCCATACCTGCGACA | 58.769 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
3783 | 4554 | 3.944055 | AGATACATCCATACCTGCGAC | 57.056 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
3784 | 4555 | 4.918588 | TCTAGATACATCCATACCTGCGA | 58.081 | 43.478 | 0.00 | 0.00 | 0.00 | 5.10 |
3785 | 4556 | 5.126222 | ACATCTAGATACATCCATACCTGCG | 59.874 | 44.000 | 4.54 | 0.00 | 0.00 | 5.18 |
3786 | 4557 | 6.537453 | ACATCTAGATACATCCATACCTGC | 57.463 | 41.667 | 4.54 | 0.00 | 0.00 | 4.85 |
3812 | 4583 | 9.547753 | GCAGAAATGGATGTATCTAGAACTAAA | 57.452 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
3813 | 4584 | 7.867909 | CGCAGAAATGGATGTATCTAGAACTAA | 59.132 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3814 | 4585 | 7.230712 | TCGCAGAAATGGATGTATCTAGAACTA | 59.769 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3815 | 4586 | 6.040955 | TCGCAGAAATGGATGTATCTAGAACT | 59.959 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3816 | 4587 | 6.216569 | TCGCAGAAATGGATGTATCTAGAAC | 58.783 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3817 | 4588 | 6.405278 | TCGCAGAAATGGATGTATCTAGAA | 57.595 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
3818 | 4589 | 6.209391 | TCATCGCAGAAATGGATGTATCTAGA | 59.791 | 38.462 | 0.00 | 0.00 | 43.58 | 2.43 |
3819 | 4590 | 6.393171 | TCATCGCAGAAATGGATGTATCTAG | 58.607 | 40.000 | 0.80 | 0.00 | 43.58 | 2.43 |
3820 | 4591 | 6.015095 | ACTCATCGCAGAAATGGATGTATCTA | 60.015 | 38.462 | 0.80 | 0.00 | 43.58 | 1.98 |
3821 | 4592 | 5.219343 | TCATCGCAGAAATGGATGTATCT | 57.781 | 39.130 | 0.80 | 0.00 | 43.58 | 1.98 |
3822 | 4593 | 4.993584 | ACTCATCGCAGAAATGGATGTATC | 59.006 | 41.667 | 0.80 | 0.00 | 43.58 | 2.24 |
3823 | 4594 | 4.965814 | ACTCATCGCAGAAATGGATGTAT | 58.034 | 39.130 | 0.80 | 0.00 | 43.58 | 2.29 |
3824 | 4595 | 4.406648 | ACTCATCGCAGAAATGGATGTA | 57.593 | 40.909 | 0.80 | 0.00 | 43.58 | 2.29 |
3825 | 4596 | 3.272574 | ACTCATCGCAGAAATGGATGT | 57.727 | 42.857 | 0.80 | 0.00 | 43.58 | 3.06 |
3826 | 4597 | 5.936686 | ATTACTCATCGCAGAAATGGATG | 57.063 | 39.130 | 0.00 | 0.00 | 43.58 | 3.51 |
3827 | 4598 | 6.543465 | TCAAATTACTCATCGCAGAAATGGAT | 59.457 | 34.615 | 0.00 | 0.00 | 43.58 | 3.41 |
3828 | 4599 | 5.879777 | TCAAATTACTCATCGCAGAAATGGA | 59.120 | 36.000 | 0.00 | 0.00 | 43.58 | 3.41 |
3829 | 4600 | 6.122850 | TCAAATTACTCATCGCAGAAATGG | 57.877 | 37.500 | 0.00 | 0.00 | 43.58 | 3.16 |
3830 | 4601 | 7.253092 | CGTTTCAAATTACTCATCGCAGAAATG | 60.253 | 37.037 | 0.00 | 0.00 | 43.58 | 2.32 |
3831 | 4602 | 6.742718 | CGTTTCAAATTACTCATCGCAGAAAT | 59.257 | 34.615 | 0.00 | 0.00 | 43.58 | 2.17 |
3832 | 4603 | 6.077197 | CGTTTCAAATTACTCATCGCAGAAA | 58.923 | 36.000 | 0.00 | 0.00 | 43.58 | 2.52 |
3833 | 4604 | 5.390461 | CCGTTTCAAATTACTCATCGCAGAA | 60.390 | 40.000 | 0.00 | 0.00 | 43.58 | 3.02 |
3834 | 4605 | 4.092821 | CCGTTTCAAATTACTCATCGCAGA | 59.907 | 41.667 | 0.00 | 0.00 | 45.75 | 4.26 |
3835 | 4606 | 4.092821 | TCCGTTTCAAATTACTCATCGCAG | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 5.18 |
3836 | 4607 | 3.997681 | TCCGTTTCAAATTACTCATCGCA | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
3837 | 4608 | 4.494199 | CCTCCGTTTCAAATTACTCATCGC | 60.494 | 45.833 | 0.00 | 0.00 | 0.00 | 4.58 |
3838 | 4609 | 4.034048 | CCCTCCGTTTCAAATTACTCATCG | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 3.84 |
3839 | 4610 | 5.183228 | TCCCTCCGTTTCAAATTACTCATC | 58.817 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
3840 | 4611 | 5.174037 | TCCCTCCGTTTCAAATTACTCAT | 57.826 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
3841 | 4612 | 4.041198 | ACTCCCTCCGTTTCAAATTACTCA | 59.959 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3842 | 4613 | 4.576879 | ACTCCCTCCGTTTCAAATTACTC | 58.423 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
3843 | 4614 | 4.635699 | ACTCCCTCCGTTTCAAATTACT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
3844 | 4615 | 5.485620 | AGTACTCCCTCCGTTTCAAATTAC | 58.514 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
3845 | 4616 | 5.750352 | AGTACTCCCTCCGTTTCAAATTA | 57.250 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3846 | 4617 | 4.635699 | AGTACTCCCTCCGTTTCAAATT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
3847 | 4618 | 4.635699 | AAGTACTCCCTCCGTTTCAAAT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
3848 | 4619 | 4.426736 | AAAGTACTCCCTCCGTTTCAAA | 57.573 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
3849 | 4620 | 5.549742 | TTAAAGTACTCCCTCCGTTTCAA | 57.450 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3850 | 4621 | 5.549742 | TTTAAAGTACTCCCTCCGTTTCA | 57.450 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3851 | 4622 | 8.728337 | ATATTTTAAAGTACTCCCTCCGTTTC | 57.272 | 34.615 | 0.00 | 0.00 | 0.00 | 2.78 |
3852 | 4623 | 9.170734 | GAATATTTTAAAGTACTCCCTCCGTTT | 57.829 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
3853 | 4624 | 8.323567 | TGAATATTTTAAAGTACTCCCTCCGTT | 58.676 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
3854 | 4625 | 7.854337 | TGAATATTTTAAAGTACTCCCTCCGT | 58.146 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
3855 | 4626 | 8.904099 | ATGAATATTTTAAAGTACTCCCTCCG | 57.096 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
3900 | 4671 | 6.208402 | TCAGCCACTTATGCAAGATTTTGTAA | 59.792 | 34.615 | 0.00 | 0.00 | 36.65 | 2.41 |
3907 | 4678 | 7.886970 | ACATATATTCAGCCACTTATGCAAGAT | 59.113 | 33.333 | 0.00 | 0.00 | 35.60 | 2.40 |
3910 | 4681 | 7.501892 | TGAACATATATTCAGCCACTTATGCAA | 59.498 | 33.333 | 0.00 | 0.00 | 33.62 | 4.08 |
3951 | 4722 | 7.095695 | TCCCTTTCCTTTTATCGCATTTTAG | 57.904 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3952 | 4723 | 7.469537 | TTCCCTTTCCTTTTATCGCATTTTA | 57.530 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3953 | 4724 | 5.993748 | TCCCTTTCCTTTTATCGCATTTT | 57.006 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
3954 | 4725 | 5.993748 | TTCCCTTTCCTTTTATCGCATTT | 57.006 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
3955 | 4726 | 5.993748 | TTTCCCTTTCCTTTTATCGCATT | 57.006 | 34.783 | 0.00 | 0.00 | 0.00 | 3.56 |
3956 | 4727 | 5.993748 | TTTTCCCTTTCCTTTTATCGCAT | 57.006 | 34.783 | 0.00 | 0.00 | 0.00 | 4.73 |
3957 | 4728 | 5.719173 | CATTTTCCCTTTCCTTTTATCGCA | 58.281 | 37.500 | 0.00 | 0.00 | 0.00 | 5.10 |
3958 | 4729 | 4.566759 | GCATTTTCCCTTTCCTTTTATCGC | 59.433 | 41.667 | 0.00 | 0.00 | 0.00 | 4.58 |
3960 | 4731 | 9.665719 | TTATTGCATTTTCCCTTTCCTTTTATC | 57.334 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
3963 | 4734 | 7.744733 | TCTTATTGCATTTTCCCTTTCCTTTT | 58.255 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
3964 | 4735 | 7.315066 | TCTTATTGCATTTTCCCTTTCCTTT | 57.685 | 32.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3965 | 4736 | 6.070596 | CCTCTTATTGCATTTTCCCTTTCCTT | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
3987 | 4765 | 9.803315 | AGTTTTTGTTCTTACTTTCATTTCCTC | 57.197 | 29.630 | 0.00 | 0.00 | 0.00 | 3.71 |
4071 | 4849 | 8.126700 | TGTTTCTTTTCGTTCTTCCTATTGTTC | 58.873 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.