Multiple sequence alignment - TraesCS5D01G044400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G044400 chr5D 100.000 4826 0 0 1 4826 43325431 43330256 0.000000e+00 8913.0
1 TraesCS5D01G044400 chr5B 91.555 2084 118 25 1883 3931 41095028 41097088 0.000000e+00 2820.0
2 TraesCS5D01G044400 chr5B 90.000 1650 92 26 255 1889 41093373 41094964 0.000000e+00 2065.0
3 TraesCS5D01G044400 chr5B 89.517 725 68 5 3209 3928 41103266 41103987 0.000000e+00 911.0
4 TraesCS5D01G044400 chr5B 91.667 180 5 3 55 225 41093201 41093379 1.740000e-59 241.0
5 TraesCS5D01G044400 chr5B 92.000 100 7 1 3866 3965 41103990 41104088 6.510000e-29 139.0
6 TraesCS5D01G044400 chr5B 92.553 94 6 1 4682 4775 357912158 357912066 3.030000e-27 134.0
7 TraesCS5D01G044400 chr5B 89.423 104 9 2 3883 3986 41097098 41097199 3.920000e-26 130.0
8 TraesCS5D01G044400 chr5B 83.916 143 14 5 4683 4824 488904360 488904494 1.410000e-25 128.0
9 TraesCS5D01G044400 chr5A 86.371 1805 137 52 139 1889 33125206 33126955 0.000000e+00 1869.0
10 TraesCS5D01G044400 chr5A 90.234 1413 82 31 2554 3931 33129438 33130829 0.000000e+00 1794.0
11 TraesCS5D01G044400 chr5A 90.669 493 28 7 1883 2362 33127018 33127505 1.460000e-179 640.0
12 TraesCS5D01G044400 chr5A 96.651 209 7 0 2353 2561 33127918 33128126 9.940000e-92 348.0
13 TraesCS5D01G044400 chr5A 89.041 219 18 4 3716 3931 33133244 33133459 2.860000e-67 267.0
14 TraesCS5D01G044400 chr5A 91.176 136 11 1 3863 3998 33131082 33131216 2.970000e-42 183.0
15 TraesCS5D01G044400 chr5A 91.429 70 5 1 3862 3931 33130953 33131021 1.430000e-15 95.3
16 TraesCS5D01G044400 chr5A 91.429 70 5 1 3862 3931 33131017 33131085 1.430000e-15 95.3
17 TraesCS5D01G044400 chr5A 96.970 33 0 1 4124 4155 80428231 80428199 2.000000e-03 54.7
18 TraesCS5D01G044400 chr6D 90.278 144 8 1 4683 4826 227511228 227511365 2.970000e-42 183.0
19 TraesCS5D01G044400 chr1B 87.218 133 13 4 4685 4816 121770576 121770447 1.080000e-31 148.0
20 TraesCS5D01G044400 chr1B 92.473 93 6 1 4683 4775 652266713 652266622 1.090000e-26 132.0
21 TraesCS5D01G044400 chr4A 93.407 91 6 0 4681 4771 499956377 499956467 8.430000e-28 135.0
22 TraesCS5D01G044400 chr6A 84.028 144 16 2 4683 4826 603695192 603695328 1.090000e-26 132.0
23 TraesCS5D01G044400 chr7B 92.308 91 7 0 4685 4775 198617496 198617406 3.920000e-26 130.0
24 TraesCS5D01G044400 chr2D 92.391 92 6 1 4683 4774 242334076 242333986 3.920000e-26 130.0
25 TraesCS5D01G044400 chr2D 97.222 36 1 0 4126 4161 544170254 544170219 1.450000e-05 62.1
26 TraesCS5D01G044400 chr2D 89.796 49 4 1 4124 4172 621346229 621346182 1.450000e-05 62.1
27 TraesCS5D01G044400 chr2B 92.135 89 6 1 4683 4770 669157709 669157621 1.820000e-24 124.0
28 TraesCS5D01G044400 chr6B 88.235 51 4 2 4125 4174 16601426 16601377 5.220000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G044400 chr5D 43325431 43330256 4825 False 8913.00 8913 100.00000 1 4826 1 chr5D.!!$F1 4825
1 TraesCS5D01G044400 chr5B 41093201 41097199 3998 False 1314.00 2820 90.66125 55 3986 4 chr5B.!!$F2 3931
2 TraesCS5D01G044400 chr5B 41103266 41104088 822 False 525.00 911 90.75850 3209 3965 2 chr5B.!!$F3 756
3 TraesCS5D01G044400 chr5A 33125206 33133459 8253 False 661.45 1869 90.87500 139 3998 8 chr5A.!!$F1 3859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 948 0.179020 CCTCCACACAAGCCAAGACA 60.179 55.0 0.0 0.0 0.0 3.41 F
986 1064 0.250901 GCCCTCTCCTCTTGTTTGCA 60.251 55.0 0.0 0.0 0.0 4.08 F
2232 2404 0.183492 TTCAACCACCAAGAGCAGCT 59.817 50.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2366 0.178990 GGTTGAAGGACCAGTTGCCT 60.179 55.0 0.00 0.0 39.57 4.75 R
2750 4669 1.059913 GGTCTACCAGATGGATGGGG 58.940 60.0 5.72 0.0 45.25 4.96 R
4016 6293 0.036306 CTGGGCCAAGTTACCTCGTT 59.964 55.0 8.04 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.945387 GCTCTTCGCATCCATTCTCA 58.055 50.000 0.00 0.00 38.92 3.27
20 21 2.283298 GCTCTTCGCATCCATTCTCAA 58.717 47.619 0.00 0.00 38.92 3.02
21 22 2.287373 GCTCTTCGCATCCATTCTCAAG 59.713 50.000 0.00 0.00 38.92 3.02
22 23 3.529533 CTCTTCGCATCCATTCTCAAGT 58.470 45.455 0.00 0.00 0.00 3.16
23 24 3.525537 TCTTCGCATCCATTCTCAAGTC 58.474 45.455 0.00 0.00 0.00 3.01
24 25 2.315925 TCGCATCCATTCTCAAGTCC 57.684 50.000 0.00 0.00 0.00 3.85
25 26 1.833630 TCGCATCCATTCTCAAGTCCT 59.166 47.619 0.00 0.00 0.00 3.85
26 27 1.938577 CGCATCCATTCTCAAGTCCTG 59.061 52.381 0.00 0.00 0.00 3.86
27 28 2.419159 CGCATCCATTCTCAAGTCCTGA 60.419 50.000 0.00 0.00 0.00 3.86
28 29 2.941720 GCATCCATTCTCAAGTCCTGAC 59.058 50.000 0.00 0.00 0.00 3.51
29 30 3.620719 GCATCCATTCTCAAGTCCTGACA 60.621 47.826 0.00 0.00 0.00 3.58
30 31 3.685139 TCCATTCTCAAGTCCTGACAC 57.315 47.619 0.00 0.00 0.00 3.67
31 32 3.242867 TCCATTCTCAAGTCCTGACACT 58.757 45.455 0.00 0.00 0.00 3.55
32 33 4.416516 TCCATTCTCAAGTCCTGACACTA 58.583 43.478 0.00 0.00 0.00 2.74
33 34 5.026121 TCCATTCTCAAGTCCTGACACTAT 58.974 41.667 0.00 0.00 0.00 2.12
34 35 5.485353 TCCATTCTCAAGTCCTGACACTATT 59.515 40.000 0.00 0.00 0.00 1.73
35 36 5.814705 CCATTCTCAAGTCCTGACACTATTC 59.185 44.000 0.00 0.00 0.00 1.75
36 37 5.407407 TTCTCAAGTCCTGACACTATTCC 57.593 43.478 0.00 0.00 0.00 3.01
37 38 3.444034 TCTCAAGTCCTGACACTATTCCG 59.556 47.826 0.00 0.00 0.00 4.30
38 39 2.496070 TCAAGTCCTGACACTATTCCGG 59.504 50.000 0.00 0.00 0.00 5.14
39 40 0.824759 AGTCCTGACACTATTCCGGC 59.175 55.000 0.00 0.00 0.00 6.13
40 41 0.527817 GTCCTGACACTATTCCGGCG 60.528 60.000 0.00 0.00 0.00 6.46
41 42 1.227263 CCTGACACTATTCCGGCGG 60.227 63.158 22.51 22.51 0.00 6.13
42 43 1.883084 CTGACACTATTCCGGCGGC 60.883 63.158 23.83 4.83 0.00 6.53
43 44 2.588034 GACACTATTCCGGCGGCC 60.588 66.667 23.83 9.54 0.00 6.13
185 196 1.835494 TCTAGCTTAGCAGTCCACGT 58.165 50.000 7.07 0.00 0.00 4.49
273 284 2.266372 CGCCCCCAATGTGTACGA 59.734 61.111 0.00 0.00 0.00 3.43
459 507 2.434185 GATTGGCTGCACCGACGA 60.434 61.111 0.50 0.00 43.94 4.20
540 596 6.342906 TCAGTTAATAAACCGTTCGATCCAT 58.657 36.000 0.00 0.00 36.15 3.41
541 597 6.819649 TCAGTTAATAAACCGTTCGATCCATT 59.180 34.615 0.00 0.00 36.15 3.16
542 598 7.334921 TCAGTTAATAAACCGTTCGATCCATTT 59.665 33.333 0.00 0.00 36.15 2.32
606 662 0.736325 ACAATGTACGCAGGAGTCGC 60.736 55.000 0.00 0.00 0.00 5.19
671 734 2.680352 TGGAGCGGGAGAGGTCAC 60.680 66.667 0.00 0.00 40.14 3.67
705 768 3.083349 TATGTGCCGGAGCTGCCT 61.083 61.111 5.05 0.00 40.80 4.75
706 769 2.669133 TATGTGCCGGAGCTGCCTT 61.669 57.895 5.05 0.00 40.80 4.35
707 770 2.196997 TATGTGCCGGAGCTGCCTTT 62.197 55.000 5.05 0.00 40.80 3.11
821 898 2.252408 AGAAAGGATGGGAGGAGAGGAT 59.748 50.000 0.00 0.00 0.00 3.24
868 945 1.604593 CCCCTCCACACAAGCCAAG 60.605 63.158 0.00 0.00 0.00 3.61
871 948 0.179020 CCTCCACACAAGCCAAGACA 60.179 55.000 0.00 0.00 0.00 3.41
875 952 2.158623 TCCACACAAGCCAAGACAATCT 60.159 45.455 0.00 0.00 0.00 2.40
878 955 4.318332 CACACAAGCCAAGACAATCTCTA 58.682 43.478 0.00 0.00 0.00 2.43
881 958 3.008375 ACAAGCCAAGACAATCTCTAGCA 59.992 43.478 0.00 0.00 32.87 3.49
896 974 8.675504 CAATCTCTAGCACTCATTTTTCATTCT 58.324 33.333 0.00 0.00 0.00 2.40
913 991 2.203800 TCTTATTAGCACGCACCGAG 57.796 50.000 0.00 0.00 0.00 4.63
986 1064 0.250901 GCCCTCTCCTCTTGTTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
988 1066 1.072965 CCCTCTCCTCTTGTTTGCACT 59.927 52.381 0.00 0.00 0.00 4.40
991 1069 3.470709 CTCTCCTCTTGTTTGCACTTCA 58.529 45.455 0.00 0.00 0.00 3.02
993 1071 4.067896 TCTCCTCTTGTTTGCACTTCATC 58.932 43.478 0.00 0.00 0.00 2.92
998 1076 6.044682 CCTCTTGTTTGCACTTCATCTTTTT 58.955 36.000 0.00 0.00 0.00 1.94
1021 1099 1.078567 GCACAAGCTCAGGGAGAGG 60.079 63.158 0.00 0.00 44.86 3.69
1022 1100 1.601171 CACAAGCTCAGGGAGAGGG 59.399 63.158 0.00 0.00 44.86 4.30
1023 1101 1.614824 ACAAGCTCAGGGAGAGGGG 60.615 63.158 0.00 0.00 44.86 4.79
1024 1102 1.306482 CAAGCTCAGGGAGAGGGGA 60.306 63.158 0.00 0.00 44.86 4.81
1025 1103 1.002792 AAGCTCAGGGAGAGGGGAG 59.997 63.158 0.00 0.00 44.86 4.30
1026 1104 1.522917 AAGCTCAGGGAGAGGGGAGA 61.523 60.000 0.00 0.00 44.86 3.71
1027 1105 1.760480 GCTCAGGGAGAGGGGAGAC 60.760 68.421 0.00 0.00 44.86 3.36
1028 1106 1.700368 CTCAGGGAGAGGGGAGACA 59.300 63.158 0.00 0.00 40.84 3.41
1029 1107 0.396974 CTCAGGGAGAGGGGAGACAG 60.397 65.000 0.00 0.00 40.84 3.51
1030 1108 0.851332 TCAGGGAGAGGGGAGACAGA 60.851 60.000 0.00 0.00 0.00 3.41
1041 1119 2.541466 GGGAGACAGAAGGGAAGAGAA 58.459 52.381 0.00 0.00 0.00 2.87
1143 1221 1.588239 TCTCAGCCCAGGTGATCAAT 58.412 50.000 0.00 0.00 39.36 2.57
1197 1275 9.468532 GGATAAGATGATCAAACTAAAAATGGC 57.531 33.333 0.00 0.00 0.00 4.40
1200 1278 6.870769 AGATGATCAAACTAAAAATGGCTGG 58.129 36.000 0.00 0.00 0.00 4.85
1201 1279 6.438425 AGATGATCAAACTAAAAATGGCTGGT 59.562 34.615 0.00 0.00 0.00 4.00
1202 1280 5.782047 TGATCAAACTAAAAATGGCTGGTG 58.218 37.500 0.00 0.00 0.00 4.17
1204 1282 5.452078 TCAAACTAAAAATGGCTGGTGAG 57.548 39.130 0.00 0.00 0.00 3.51
1371 1452 3.595691 GACACCAGGTCAGTCTGTG 57.404 57.895 0.00 0.00 46.19 3.66
1466 1547 6.509418 GGTACCAGCACATCAATTTTAAGA 57.491 37.500 7.15 0.00 0.00 2.10
1467 1548 6.919721 GGTACCAGCACATCAATTTTAAGAA 58.080 36.000 7.15 0.00 0.00 2.52
1468 1549 7.547227 GGTACCAGCACATCAATTTTAAGAAT 58.453 34.615 7.15 0.00 0.00 2.40
1469 1550 7.702348 GGTACCAGCACATCAATTTTAAGAATC 59.298 37.037 7.15 0.00 0.00 2.52
1470 1551 7.472334 ACCAGCACATCAATTTTAAGAATCT 57.528 32.000 0.00 0.00 0.00 2.40
1471 1552 7.318141 ACCAGCACATCAATTTTAAGAATCTG 58.682 34.615 0.00 0.00 0.00 2.90
1472 1553 6.255020 CCAGCACATCAATTTTAAGAATCTGC 59.745 38.462 0.00 0.00 0.00 4.26
1473 1554 6.809689 CAGCACATCAATTTTAAGAATCTGCA 59.190 34.615 0.00 0.00 0.00 4.41
1474 1555 7.491372 CAGCACATCAATTTTAAGAATCTGCAT 59.509 33.333 0.00 0.00 0.00 3.96
1475 1556 7.491372 AGCACATCAATTTTAAGAATCTGCATG 59.509 33.333 0.00 0.00 0.00 4.06
1476 1557 7.618442 CACATCAATTTTAAGAATCTGCATGC 58.382 34.615 11.82 11.82 0.00 4.06
1477 1558 7.276878 CACATCAATTTTAAGAATCTGCATGCA 59.723 33.333 21.29 21.29 0.00 3.96
1478 1559 7.985184 ACATCAATTTTAAGAATCTGCATGCAT 59.015 29.630 22.97 6.38 0.00 3.96
1479 1560 7.764695 TCAATTTTAAGAATCTGCATGCATG 57.235 32.000 22.97 22.70 0.00 4.06
1480 1561 7.548967 TCAATTTTAAGAATCTGCATGCATGA 58.451 30.769 30.64 19.98 0.00 3.07
1481 1562 8.035984 TCAATTTTAAGAATCTGCATGCATGAA 58.964 29.630 30.64 19.89 0.00 2.57
1482 1563 8.328146 CAATTTTAAGAATCTGCATGCATGAAG 58.672 33.333 30.64 28.57 34.60 3.02
1483 1564 6.519679 TTTAAGAATCTGCATGCATGAAGT 57.480 33.333 29.98 15.30 34.90 3.01
1484 1565 4.371855 AAGAATCTGCATGCATGAAGTG 57.628 40.909 29.98 15.98 34.90 3.16
1506 1587 7.428826 AGTGAAAAGATGAATTTTGTCAGGTC 58.571 34.615 0.00 0.00 32.62 3.85
1605 1686 2.702592 CCAAGGTATGGCGTTTCCTA 57.297 50.000 4.07 0.00 43.80 2.94
1653 1734 5.252547 TCAGCCTTATTTGCATAACACTCA 58.747 37.500 0.00 0.00 0.00 3.41
1723 1804 7.413109 GGTGATAGGAAAGACTTTGATTTCGTC 60.413 40.741 4.85 0.00 36.49 4.20
1736 1817 2.341846 TTTCGTCAAGACCAGCCTTT 57.658 45.000 0.00 0.00 0.00 3.11
1783 1864 9.367444 GTCTATGATATTAATGGTAAACCGGAG 57.633 37.037 9.46 0.00 39.43 4.63
1788 1869 5.881923 ATTAATGGTAAACCGGAGAGCTA 57.118 39.130 9.46 0.00 39.43 3.32
1789 1870 3.538634 AATGGTAAACCGGAGAGCTAC 57.461 47.619 9.46 1.47 39.43 3.58
1791 1872 2.250031 TGGTAAACCGGAGAGCTACAA 58.750 47.619 9.46 0.00 39.43 2.41
1792 1873 2.835764 TGGTAAACCGGAGAGCTACAAT 59.164 45.455 9.46 0.00 39.43 2.71
1793 1874 4.025360 TGGTAAACCGGAGAGCTACAATA 58.975 43.478 9.46 0.00 39.43 1.90
1794 1875 4.652421 TGGTAAACCGGAGAGCTACAATAT 59.348 41.667 9.46 0.00 39.43 1.28
1795 1876 5.834742 TGGTAAACCGGAGAGCTACAATATA 59.165 40.000 9.46 0.00 39.43 0.86
1798 1879 5.708877 AACCGGAGAGCTACAATATACTC 57.291 43.478 9.46 0.00 0.00 2.59
1818 1899 4.580167 ACTCTTTTTATGAACACAGCAGCA 59.420 37.500 0.00 0.00 0.00 4.41
1840 1921 5.682862 GCACCGTATTTCATTGATTAAGCAG 59.317 40.000 0.00 0.00 0.00 4.24
1947 2098 1.667830 CCTCGGCGAGCACTGAAAA 60.668 57.895 30.55 0.00 0.00 2.29
1948 2099 1.493311 CTCGGCGAGCACTGAAAAC 59.507 57.895 25.31 0.00 0.00 2.43
1949 2100 1.901650 CTCGGCGAGCACTGAAAACC 61.902 60.000 25.31 0.00 0.00 3.27
1957 2108 3.303791 CGAGCACTGAAAACCTGGTTAAC 60.304 47.826 13.37 10.34 0.00 2.01
1962 2113 4.070009 ACTGAAAACCTGGTTAACGGATC 58.930 43.478 22.56 12.17 0.00 3.36
1991 2142 4.081972 CGGAGTACATCATTCATAGGAGGG 60.082 50.000 0.00 0.00 0.00 4.30
2016 2167 0.838122 CGGCAAGGATATCCCCTCCT 60.838 60.000 18.56 0.00 45.21 3.69
2032 2183 2.774234 CCTCCTGCCTCTCCTTTTCATA 59.226 50.000 0.00 0.00 0.00 2.15
2050 2201 7.649533 TTTCATACTCATCATGGATTTGCTT 57.350 32.000 0.00 0.00 0.00 3.91
2055 2206 4.142227 ACTCATCATGGATTTGCTTTGCTC 60.142 41.667 0.00 0.00 0.00 4.26
2091 2257 1.213430 TCCTTGTTCCCTTTGGTTCGT 59.787 47.619 0.00 0.00 0.00 3.85
2146 2312 5.240183 CCGATGATGCTGTGATTTTTATCCT 59.760 40.000 0.00 0.00 0.00 3.24
2200 2366 3.207777 AGTCTCCTAGATCCCTTTGGCTA 59.792 47.826 0.00 0.00 0.00 3.93
2232 2404 0.183492 TTCAACCACCAAGAGCAGCT 59.817 50.000 0.00 0.00 0.00 4.24
2271 2443 3.242641 CGATCACATTGACCTGAATGCTG 60.243 47.826 0.00 0.00 36.89 4.41
2605 4524 5.163258 CCCTGAACTATCTAGCATTCTGGTT 60.163 44.000 14.22 0.00 38.07 3.67
2744 4663 2.661537 TGACTCGTGGCAAGCGTG 60.662 61.111 0.00 0.00 0.00 5.34
2761 4680 1.387781 TGCCCATCCCCATCCATCT 60.388 57.895 0.00 0.00 0.00 2.90
2814 4733 2.356125 GCATAAGGGAAAGCTGGAGACA 60.356 50.000 0.00 0.00 39.59 3.41
3018 4937 0.522626 TGACATGCGGTGAATTGCTG 59.477 50.000 0.00 0.00 0.00 4.41
3019 4938 0.799534 GACATGCGGTGAATTGCTGC 60.800 55.000 0.00 0.00 38.62 5.25
3021 4940 0.734309 CATGCGGTGAATTGCTGCTA 59.266 50.000 0.00 0.00 38.90 3.49
3023 4942 1.016627 TGCGGTGAATTGCTGCTATC 58.983 50.000 0.00 0.00 38.90 2.08
3024 4943 0.041839 GCGGTGAATTGCTGCTATCG 60.042 55.000 0.00 0.00 35.49 2.92
3025 4944 0.583438 CGGTGAATTGCTGCTATCGG 59.417 55.000 0.00 0.00 0.00 4.18
3026 4945 0.947244 GGTGAATTGCTGCTATCGGG 59.053 55.000 0.00 0.00 0.00 5.14
3027 4946 1.668419 GTGAATTGCTGCTATCGGGT 58.332 50.000 0.00 0.00 0.00 5.28
3028 4947 2.017049 GTGAATTGCTGCTATCGGGTT 58.983 47.619 0.00 0.00 0.00 4.11
3031 4950 0.740737 ATTGCTGCTATCGGGTTTGC 59.259 50.000 0.00 0.00 0.00 3.68
3033 4952 1.026182 TGCTGCTATCGGGTTTGCTG 61.026 55.000 0.00 0.00 0.00 4.41
3034 4953 1.723870 CTGCTATCGGGTTTGCTGC 59.276 57.895 0.00 0.00 0.00 5.25
3035 4954 1.718757 CTGCTATCGGGTTTGCTGCC 61.719 60.000 0.00 0.00 0.00 4.85
3036 4955 1.452108 GCTATCGGGTTTGCTGCCT 60.452 57.895 0.00 0.00 0.00 4.75
3037 4956 1.032114 GCTATCGGGTTTGCTGCCTT 61.032 55.000 0.00 0.00 0.00 4.35
3058 4977 6.586344 CCTTAAGCCATCTTCTGTATCTTGA 58.414 40.000 0.00 0.00 33.85 3.02
3090 5009 3.864686 CAGGATTTGGCGACGGCG 61.865 66.667 17.16 6.12 41.24 6.46
3224 5146 1.001378 ACTGTTCCTCGTTTGCAATGC 60.001 47.619 0.00 0.00 0.00 3.56
3247 5169 5.694995 CAAACCACTCTATATCCATGGGTT 58.305 41.667 13.02 2.34 41.08 4.11
3283 5228 8.609176 GTTTCTAACTATACATCATTTTCCGCA 58.391 33.333 0.00 0.00 0.00 5.69
3289 5234 1.135024 ACATCATTTTCCGCATGGTGC 60.135 47.619 0.00 0.00 36.36 5.01
3412 5365 6.897966 AGAGACCAGGTATTTCTTCTACATCA 59.102 38.462 0.00 0.00 0.00 3.07
3416 5369 5.471456 CCAGGTATTTCTTCTACATCATGCC 59.529 44.000 0.00 0.00 0.00 4.40
3458 5411 1.939974 GTGTTGCTGACTGACACTGA 58.060 50.000 0.00 0.00 40.28 3.41
3675 5628 3.612247 GACCTGAGGCGTGCATGGT 62.612 63.158 8.27 0.00 0.00 3.55
3720 5673 4.962122 GCGTGTGGCAACTGCGTG 62.962 66.667 9.74 0.00 43.26 5.34
3809 5763 2.282555 CCGATGAAATGTACTGCTGACG 59.717 50.000 0.00 0.00 0.00 4.35
3830 5787 2.545946 GCCTAATTCTCTCGTGGCATTC 59.454 50.000 0.00 0.00 40.04 2.67
3834 5791 0.389817 TTCTCTCGTGGCATTCGGTG 60.390 55.000 0.00 0.00 0.00 4.94
3891 5849 5.286267 TCAGTTTTCTAAGAACGGAACCT 57.714 39.130 0.00 0.00 30.26 3.50
3965 6242 3.066203 CCGTTTAACTGGATTGCCCATAC 59.934 47.826 0.90 0.00 45.57 2.39
3968 6245 2.736670 AACTGGATTGCCCATACTCC 57.263 50.000 0.00 0.00 45.57 3.85
3982 6259 4.264083 CCCATACTCCCATGCCAATAGAAT 60.264 45.833 0.00 0.00 0.00 2.40
3990 6267 3.074390 CCATGCCAATAGAATAGGGACCA 59.926 47.826 0.00 0.00 0.00 4.02
4001 6278 3.237414 GGGACCACCTATTCCCCG 58.763 66.667 0.00 0.00 45.40 5.73
4002 6279 1.383525 GGGACCACCTATTCCCCGA 60.384 63.158 0.00 0.00 45.40 5.14
4003 6280 1.693152 GGGACCACCTATTCCCCGAC 61.693 65.000 0.00 0.00 45.40 4.79
4004 6281 1.693152 GGACCACCTATTCCCCGACC 61.693 65.000 0.00 0.00 0.00 4.79
4005 6282 1.691689 ACCACCTATTCCCCGACCC 60.692 63.158 0.00 0.00 0.00 4.46
4006 6283 2.803817 CCACCTATTCCCCGACCCG 61.804 68.421 0.00 0.00 0.00 5.28
4007 6284 2.062177 CACCTATTCCCCGACCCGT 61.062 63.158 0.00 0.00 0.00 5.28
4009 6286 2.108362 CTATTCCCCGACCCGTGC 59.892 66.667 0.00 0.00 0.00 5.34
4010 6287 2.684294 TATTCCCCGACCCGTGCA 60.684 61.111 0.00 0.00 0.00 4.57
4011 6288 2.246761 CTATTCCCCGACCCGTGCAA 62.247 60.000 0.00 0.00 0.00 4.08
4012 6289 1.628238 TATTCCCCGACCCGTGCAAT 61.628 55.000 0.00 0.00 0.00 3.56
4014 6291 4.402528 CCCCGACCCGTGCAATGA 62.403 66.667 0.00 0.00 0.00 2.57
4016 6293 1.145156 CCCGACCCGTGCAATGATA 59.855 57.895 0.00 0.00 0.00 2.15
4017 6294 0.462937 CCCGACCCGTGCAATGATAA 60.463 55.000 0.00 0.00 0.00 1.75
4018 6295 0.655733 CCGACCCGTGCAATGATAAC 59.344 55.000 0.00 0.00 0.00 1.89
4019 6296 0.300491 CGACCCGTGCAATGATAACG 59.700 55.000 0.00 0.00 37.07 3.18
4020 6297 1.647346 GACCCGTGCAATGATAACGA 58.353 50.000 0.00 0.00 39.64 3.85
4022 6299 0.937304 CCCGTGCAATGATAACGAGG 59.063 55.000 0.00 2.41 39.64 4.63
4024 6301 2.482316 CCCGTGCAATGATAACGAGGTA 60.482 50.000 0.00 0.00 39.64 3.08
4025 6302 3.191669 CCGTGCAATGATAACGAGGTAA 58.808 45.455 0.00 0.00 39.64 2.85
4026 6303 3.000925 CCGTGCAATGATAACGAGGTAAC 59.999 47.826 0.00 0.00 39.64 2.50
4060 6337 4.109675 GCGGGGCTCCCTTGCTTA 62.110 66.667 0.00 0.00 42.67 3.09
4092 6369 8.872845 TCATTTCTGTTTTCTTTCTTTTGCTTC 58.127 29.630 0.00 0.00 0.00 3.86
4095 6372 8.466086 TTCTGTTTTCTTTCTTTTGCTTCTTC 57.534 30.769 0.00 0.00 0.00 2.87
4122 6402 6.594284 AAAGTTCGGGATAAATACTTACGC 57.406 37.500 0.00 0.00 0.00 4.42
4160 6441 9.521503 TGTTCACGAATTCAAAAATGTTTATGA 57.478 25.926 6.22 0.00 0.00 2.15
4333 6615 9.853555 TTGTATGAGCAGTTTTTAAATGTATGG 57.146 29.630 0.00 0.00 0.00 2.74
4336 6618 6.607689 TGAGCAGTTTTTAAATGTATGGACG 58.392 36.000 0.00 0.00 0.00 4.79
4365 6667 7.966339 TTGAGATGGATGAAGATTTTGGAAT 57.034 32.000 0.00 0.00 0.00 3.01
4371 6673 8.771521 ATGGATGAAGATTTTGGAATATGACA 57.228 30.769 0.00 0.00 0.00 3.58
4418 6720 8.735692 AAAAACTTTGAATTCAATGACCACAT 57.264 26.923 30.30 12.00 38.50 3.21
4419 6721 8.735692 AAAACTTTGAATTCAATGACCACATT 57.264 26.923 30.30 16.02 46.10 2.71
4420 6722 8.735692 AAACTTTGAATTCAATGACCACATTT 57.264 26.923 30.30 19.54 43.17 2.32
4421 6723 8.735692 AACTTTGAATTCAATGACCACATTTT 57.264 26.923 30.30 14.94 43.17 1.82
4422 6724 8.145316 ACTTTGAATTCAATGACCACATTTTG 57.855 30.769 30.30 5.78 43.17 2.44
4423 6725 7.986320 ACTTTGAATTCAATGACCACATTTTGA 59.014 29.630 30.30 9.38 43.17 2.69
4424 6726 8.728337 TTTGAATTCAATGACCACATTTTGAA 57.272 26.923 21.10 0.00 43.17 2.69
4425 6727 8.905660 TTGAATTCAATGACCACATTTTGAAT 57.094 26.923 16.91 4.39 43.17 2.57
4426 6728 8.905660 TGAATTCAATGACCACATTTTGAATT 57.094 26.923 17.55 17.55 46.56 2.17
4427 6729 9.339850 TGAATTCAATGACCACATTTTGAATTT 57.660 25.926 18.21 7.38 45.41 1.82
4428 6730 9.601971 GAATTCAATGACCACATTTTGAATTTG 57.398 29.630 18.21 0.00 45.41 2.32
4429 6731 8.905660 ATTCAATGACCACATTTTGAATTTGA 57.094 26.923 4.39 0.00 43.17 2.69
4430 6732 8.905660 TTCAATGACCACATTTTGAATTTGAT 57.094 26.923 0.00 0.00 43.17 2.57
4431 6733 8.312896 TCAATGACCACATTTTGAATTTGATG 57.687 30.769 0.00 0.00 43.17 3.07
4433 6735 8.941977 CAATGACCACATTTTGAATTTGATGAT 58.058 29.630 0.00 0.00 43.17 2.45
4437 6739 9.815936 GACCACATTTTGAATTTGATGATTTTC 57.184 29.630 0.00 0.00 0.00 2.29
4606 6943 0.322546 CCCAAAACCGGAAGAGGGAG 60.323 60.000 9.46 0.00 38.60 4.30
4613 6950 2.899339 GGAAGAGGGAGCATGCGC 60.899 66.667 13.62 13.62 38.99 6.09
4639 6976 1.104577 GGCCGGCCCGAATTCAAATA 61.105 55.000 36.64 0.00 0.00 1.40
4640 6977 0.310854 GCCGGCCCGAATTCAAATAG 59.689 55.000 18.11 0.00 0.00 1.73
4641 6978 0.951558 CCGGCCCGAATTCAAATAGG 59.048 55.000 3.71 0.00 0.00 2.57
4642 6979 0.951558 CGGCCCGAATTCAAATAGGG 59.048 55.000 0.00 10.21 44.72 3.53
4643 6980 1.749286 CGGCCCGAATTCAAATAGGGT 60.749 52.381 14.60 0.00 43.82 4.34
4644 6981 1.681264 GGCCCGAATTCAAATAGGGTG 59.319 52.381 14.60 0.19 43.82 4.61
4647 6984 2.099098 CCCGAATTCAAATAGGGTGTGC 59.901 50.000 6.22 0.00 37.36 4.57
4648 6985 3.016736 CCGAATTCAAATAGGGTGTGCT 58.983 45.455 6.22 0.00 0.00 4.40
4649 6986 3.443681 CCGAATTCAAATAGGGTGTGCTT 59.556 43.478 6.22 0.00 0.00 3.91
4650 6987 4.082245 CCGAATTCAAATAGGGTGTGCTTT 60.082 41.667 6.22 0.00 0.00 3.51
4651 6988 5.095490 CGAATTCAAATAGGGTGTGCTTTC 58.905 41.667 6.22 0.00 0.00 2.62
4653 6990 3.134574 TCAAATAGGGTGTGCTTTCGT 57.865 42.857 0.00 0.00 0.00 3.85
4654 6991 3.482436 TCAAATAGGGTGTGCTTTCGTT 58.518 40.909 0.00 0.00 0.00 3.85
4655 6992 3.500680 TCAAATAGGGTGTGCTTTCGTTC 59.499 43.478 0.00 0.00 0.00 3.95
4656 6993 2.851263 ATAGGGTGTGCTTTCGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
4657 6994 2.623878 TAGGGTGTGCTTTCGTTCAA 57.376 45.000 0.00 0.00 0.00 2.69
4658 6995 1.021968 AGGGTGTGCTTTCGTTCAAC 58.978 50.000 0.00 0.00 0.00 3.18
4659 6996 0.736053 GGGTGTGCTTTCGTTCAACA 59.264 50.000 0.00 0.00 0.00 3.33
4660 6997 1.133407 GGGTGTGCTTTCGTTCAACAA 59.867 47.619 0.00 0.00 0.00 2.83
4661 6998 2.416162 GGGTGTGCTTTCGTTCAACAAA 60.416 45.455 0.00 0.00 0.00 2.83
4671 7008 0.591659 GTTCAACAAACGGGAGCTCC 59.408 55.000 25.59 25.59 0.00 4.70
4672 7009 0.472471 TTCAACAAACGGGAGCTCCT 59.528 50.000 31.36 11.02 35.95 3.69
4673 7010 1.344065 TCAACAAACGGGAGCTCCTA 58.656 50.000 31.36 4.26 35.95 2.94
4674 7011 1.906574 TCAACAAACGGGAGCTCCTAT 59.093 47.619 31.36 17.42 35.95 2.57
4676 7013 3.709653 TCAACAAACGGGAGCTCCTATAT 59.290 43.478 31.36 13.61 35.95 0.86
4677 7014 4.897076 TCAACAAACGGGAGCTCCTATATA 59.103 41.667 31.36 6.63 35.95 0.86
4679 7016 3.258622 ACAAACGGGAGCTCCTATATAGC 59.741 47.826 31.36 12.50 40.40 2.97
4680 7017 1.752683 ACGGGAGCTCCTATATAGCG 58.247 55.000 31.36 24.81 44.87 4.26
4681 7018 0.382515 CGGGAGCTCCTATATAGCGC 59.617 60.000 31.36 11.02 44.87 5.92
4682 7019 0.382515 GGGAGCTCCTATATAGCGCG 59.617 60.000 31.36 0.00 44.87 6.86
4683 7020 0.382515 GGAGCTCCTATATAGCGCGG 59.617 60.000 26.25 0.00 44.87 6.46
4684 7021 0.248702 GAGCTCCTATATAGCGCGGC 60.249 60.000 8.83 0.00 44.87 6.53
4696 7545 1.961793 AGCGCGGCATTTCCTATTTA 58.038 45.000 8.83 0.00 0.00 1.40
4697 7546 1.873591 AGCGCGGCATTTCCTATTTAG 59.126 47.619 8.83 0.00 0.00 1.85
4698 7547 1.663161 GCGCGGCATTTCCTATTTAGC 60.663 52.381 8.83 0.00 0.00 3.09
4700 7549 1.663161 GCGGCATTTCCTATTTAGCGC 60.663 52.381 0.00 0.00 0.00 5.92
4701 7550 1.069227 CGGCATTTCCTATTTAGCGCC 60.069 52.381 2.29 0.00 34.91 6.53
4702 7551 1.953686 GGCATTTCCTATTTAGCGCCA 59.046 47.619 2.29 0.00 38.20 5.69
4703 7552 2.287608 GGCATTTCCTATTTAGCGCCAC 60.288 50.000 2.29 0.00 38.20 5.01
4704 7553 2.357637 GCATTTCCTATTTAGCGCCACA 59.642 45.455 2.29 0.00 0.00 4.17
4705 7554 3.548818 GCATTTCCTATTTAGCGCCACAG 60.549 47.826 2.29 0.00 0.00 3.66
4706 7555 2.325583 TTCCTATTTAGCGCCACAGG 57.674 50.000 2.29 4.12 0.00 4.00
4707 7556 0.179056 TCCTATTTAGCGCCACAGGC 60.179 55.000 2.29 0.00 46.75 4.85
4717 7566 2.670251 CCACAGGCGCCGGTTTTA 60.670 61.111 30.29 0.00 0.00 1.52
4721 7570 1.209127 CAGGCGCCGGTTTTAGTTG 59.791 57.895 23.20 6.45 0.00 3.16
4724 7573 0.031043 GGCGCCGGTTTTAGTTGTTT 59.969 50.000 12.58 0.00 0.00 2.83
4725 7574 1.401530 GCGCCGGTTTTAGTTGTTTC 58.598 50.000 1.90 0.00 0.00 2.78
4726 7575 1.927268 GCGCCGGTTTTAGTTGTTTCC 60.927 52.381 1.90 0.00 0.00 3.13
4727 7576 1.660896 CGCCGGTTTTAGTTGTTTCCG 60.661 52.381 1.90 0.00 38.05 4.30
4728 7577 1.927268 GCCGGTTTTAGTTGTTTCCGC 60.927 52.381 1.90 0.00 37.17 5.54
4729 7578 1.334243 CCGGTTTTAGTTGTTTCCGCA 59.666 47.619 0.00 0.00 37.17 5.69
4731 7580 3.436496 CGGTTTTAGTTGTTTCCGCAAA 58.564 40.909 0.00 0.00 0.00 3.68
4732 7581 3.241091 CGGTTTTAGTTGTTTCCGCAAAC 59.759 43.478 0.00 0.00 42.16 2.93
4733 7582 3.552699 GGTTTTAGTTGTTTCCGCAAACC 59.447 43.478 0.00 0.00 41.25 3.27
4734 7583 2.759538 TTAGTTGTTTCCGCAAACCG 57.240 45.000 0.00 0.00 41.25 4.44
4774 7623 2.259204 GGCCGGCCCGTTTAAAAC 59.741 61.111 36.64 5.01 0.00 2.43
4775 7624 2.259204 GCCGGCCCGTTTAAAACC 59.741 61.111 18.11 0.00 0.00 3.27
4776 7625 2.964174 CCGGCCCGTTTAAAACCC 59.036 61.111 0.85 0.00 0.00 4.11
4777 7626 2.562398 CGGCCCGTTTAAAACCCG 59.438 61.111 0.00 0.00 0.00 5.28
4779 7628 1.307355 CGGCCCGTTTAAAACCCGAT 61.307 55.000 0.00 0.00 36.31 4.18
4780 7629 0.889994 GGCCCGTTTAAAACCCGATT 59.110 50.000 0.00 0.00 0.00 3.34
4781 7630 1.273048 GGCCCGTTTAAAACCCGATTT 59.727 47.619 0.00 0.00 0.00 2.17
4783 7632 2.671914 GCCCGTTTAAAACCCGATTTCC 60.672 50.000 0.00 0.00 0.00 3.13
4784 7633 2.094597 CCCGTTTAAAACCCGATTTCCC 60.095 50.000 0.00 0.00 0.00 3.97
4785 7634 2.094597 CCGTTTAAAACCCGATTTCCCC 60.095 50.000 0.00 0.00 0.00 4.81
4786 7635 2.094597 CGTTTAAAACCCGATTTCCCCC 60.095 50.000 0.00 0.00 0.00 5.40
4787 7636 2.898612 GTTTAAAACCCGATTTCCCCCA 59.101 45.455 0.00 0.00 0.00 4.96
4789 7638 0.543410 AAAACCCGATTTCCCCCACC 60.543 55.000 0.00 0.00 0.00 4.61
4791 7640 4.137615 CCCGATTTCCCCCACCCC 62.138 72.222 0.00 0.00 0.00 4.95
4792 7641 4.137615 CCGATTTCCCCCACCCCC 62.138 72.222 0.00 0.00 0.00 5.40
4811 7660 4.415332 CGTCCCGTGGTCGTCCAG 62.415 72.222 0.19 0.00 45.24 3.86
4812 7661 3.300765 GTCCCGTGGTCGTCCAGT 61.301 66.667 0.19 0.00 45.24 4.00
4813 7662 2.522436 TCCCGTGGTCGTCCAGTT 60.522 61.111 0.19 0.00 45.24 3.16
4814 7663 2.048503 CCCGTGGTCGTCCAGTTC 60.049 66.667 0.19 0.00 45.24 3.01
4815 7664 2.571216 CCCGTGGTCGTCCAGTTCT 61.571 63.158 0.19 0.00 45.24 3.01
4816 7665 1.366366 CCGTGGTCGTCCAGTTCTT 59.634 57.895 0.19 0.00 45.24 2.52
4818 7667 1.137513 CGTGGTCGTCCAGTTCTTTC 58.862 55.000 0.19 0.00 45.24 2.62
4819 7668 1.509703 GTGGTCGTCCAGTTCTTTCC 58.490 55.000 0.19 0.00 45.24 3.13
4820 7669 0.395312 TGGTCGTCCAGTTCTTTCCC 59.605 55.000 0.00 0.00 39.03 3.97
4822 7671 0.321387 GTCGTCCAGTTCTTTCCCCC 60.321 60.000 0.00 0.00 0.00 5.40
4823 7672 1.375523 CGTCCAGTTCTTTCCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
4824 7673 1.823169 CGTCCAGTTCTTTCCCCCGA 61.823 60.000 0.00 0.00 0.00 5.14
4825 7674 0.321387 GTCCAGTTCTTTCCCCCGAC 60.321 60.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.525537 GACTTGAGAATGGATGCGAAGA 58.474 45.455 0.00 0.00 0.00 2.87
3 4 2.611292 GGACTTGAGAATGGATGCGAAG 59.389 50.000 0.00 0.00 0.00 3.79
4 5 2.237143 AGGACTTGAGAATGGATGCGAA 59.763 45.455 0.00 0.00 0.00 4.70
5 6 1.833630 AGGACTTGAGAATGGATGCGA 59.166 47.619 0.00 0.00 0.00 5.10
6 7 1.938577 CAGGACTTGAGAATGGATGCG 59.061 52.381 0.00 0.00 0.00 4.73
7 8 2.941720 GTCAGGACTTGAGAATGGATGC 59.058 50.000 0.00 0.00 36.21 3.91
8 9 3.937706 GTGTCAGGACTTGAGAATGGATG 59.062 47.826 0.65 0.00 36.21 3.51
9 10 3.843027 AGTGTCAGGACTTGAGAATGGAT 59.157 43.478 0.65 0.00 36.21 3.41
10 11 3.242867 AGTGTCAGGACTTGAGAATGGA 58.757 45.455 0.65 0.00 36.21 3.41
11 12 3.692257 AGTGTCAGGACTTGAGAATGG 57.308 47.619 0.65 0.00 36.21 3.16
12 13 5.814705 GGAATAGTGTCAGGACTTGAGAATG 59.185 44.000 0.65 0.00 36.21 2.67
13 14 5.394663 CGGAATAGTGTCAGGACTTGAGAAT 60.395 44.000 0.65 0.00 36.21 2.40
14 15 4.082190 CGGAATAGTGTCAGGACTTGAGAA 60.082 45.833 0.65 0.00 36.21 2.87
15 16 3.444034 CGGAATAGTGTCAGGACTTGAGA 59.556 47.826 0.65 0.00 36.21 3.27
16 17 3.429547 CCGGAATAGTGTCAGGACTTGAG 60.430 52.174 0.00 0.00 36.21 3.02
17 18 2.496070 CCGGAATAGTGTCAGGACTTGA 59.504 50.000 0.00 0.00 35.07 3.02
18 19 2.893637 CCGGAATAGTGTCAGGACTTG 58.106 52.381 0.00 0.00 35.07 3.16
19 20 1.207329 GCCGGAATAGTGTCAGGACTT 59.793 52.381 5.05 0.00 35.07 3.01
20 21 0.824759 GCCGGAATAGTGTCAGGACT 59.175 55.000 5.05 0.00 35.07 3.85
21 22 0.527817 CGCCGGAATAGTGTCAGGAC 60.528 60.000 5.05 0.00 35.07 3.85
22 23 1.672854 CCGCCGGAATAGTGTCAGGA 61.673 60.000 5.05 0.00 35.07 3.86
23 24 1.227263 CCGCCGGAATAGTGTCAGG 60.227 63.158 5.05 0.00 36.09 3.86
24 25 1.883084 GCCGCCGGAATAGTGTCAG 60.883 63.158 7.68 0.00 0.00 3.51
25 26 2.185867 GCCGCCGGAATAGTGTCA 59.814 61.111 7.68 0.00 0.00 3.58
26 27 2.588034 GGCCGCCGGAATAGTGTC 60.588 66.667 7.68 0.00 0.00 3.67
27 28 4.524318 CGGCCGCCGGAATAGTGT 62.524 66.667 24.66 0.00 44.15 3.55
58 59 4.143333 CCGGGCTCCGTACACCTG 62.143 72.222 11.85 0.00 46.80 4.00
77 78 4.759096 GCCAACGCGCATCCACAC 62.759 66.667 5.73 0.00 0.00 3.82
81 82 4.481112 CCAAGCCAACGCGCATCC 62.481 66.667 5.73 0.00 41.18 3.51
265 276 3.318539 GAGCCGCTCGTCGTACACA 62.319 63.158 4.23 0.00 36.19 3.72
288 299 4.758251 CGCCACCATCACCGCAGA 62.758 66.667 0.00 0.00 0.00 4.26
334 345 4.493747 CGTCGCCGGTCTCTTCCC 62.494 72.222 1.90 0.00 0.00 3.97
394 405 4.416738 GAGCCACCCCTGCTGGAC 62.417 72.222 11.88 0.00 39.69 4.02
395 406 4.664267 AGAGCCACCCCTGCTGGA 62.664 66.667 11.88 0.00 39.69 3.86
408 447 3.991536 GAGTTCGTCGGCCCAGAGC 62.992 68.421 0.00 0.00 42.60 4.09
443 491 2.031919 TTCGTCGGTGCAGCCAAT 59.968 55.556 10.90 0.00 36.97 3.16
444 492 2.970324 GTTCGTCGGTGCAGCCAA 60.970 61.111 10.90 0.00 36.97 4.52
446 494 4.980805 TGGTTCGTCGGTGCAGCC 62.981 66.667 10.90 2.64 0.00 4.85
456 504 1.668101 GCTCTCTCCGGATGGTTCGT 61.668 60.000 3.57 0.00 36.30 3.85
459 507 3.211288 CGCTCTCTCCGGATGGTT 58.789 61.111 3.57 0.00 36.30 3.67
668 731 1.753078 CTCATCCCCTCCGACGTGA 60.753 63.158 0.00 0.00 0.00 4.35
671 734 0.539901 ATACCTCATCCCCTCCGACG 60.540 60.000 0.00 0.00 0.00 5.12
673 736 0.561184 ACATACCTCATCCCCTCCGA 59.439 55.000 0.00 0.00 0.00 4.55
705 768 6.768483 TGATGTCAGTCAAACATAGGAGAAA 58.232 36.000 0.00 0.00 37.47 2.52
706 769 6.211384 TCTGATGTCAGTCAAACATAGGAGAA 59.789 38.462 9.65 0.00 44.12 2.87
707 770 5.716703 TCTGATGTCAGTCAAACATAGGAGA 59.283 40.000 9.65 0.00 44.12 3.71
821 898 3.511477 GCCCTATCTATCCTCTGTTGGA 58.489 50.000 0.00 0.00 40.82 3.53
868 945 7.369803 TGAAAAATGAGTGCTAGAGATTGTC 57.630 36.000 0.00 0.00 0.00 3.18
871 948 8.804912 AGAATGAAAAATGAGTGCTAGAGATT 57.195 30.769 0.00 0.00 0.00 2.40
878 955 8.742777 TGCTAATAAGAATGAAAAATGAGTGCT 58.257 29.630 0.00 0.00 0.00 4.40
881 958 7.698130 GCGTGCTAATAAGAATGAAAAATGAGT 59.302 33.333 0.00 0.00 0.00 3.41
896 974 0.808453 GGCTCGGTGCGTGCTAATAA 60.808 55.000 0.00 0.00 44.17 1.40
913 991 1.338020 CCCTTGTCTGAAACTTGTGGC 59.662 52.381 0.00 0.00 0.00 5.01
986 1064 6.903419 GCTTGTGCTACTAAAAAGATGAAGT 58.097 36.000 0.00 0.00 36.03 3.01
1019 1097 0.793617 TCTTCCCTTCTGTCTCCCCT 59.206 55.000 0.00 0.00 0.00 4.79
1020 1098 1.199615 CTCTTCCCTTCTGTCTCCCC 58.800 60.000 0.00 0.00 0.00 4.81
1021 1099 2.239681 TCTCTTCCCTTCTGTCTCCC 57.760 55.000 0.00 0.00 0.00 4.30
1022 1100 4.512484 CATTTCTCTTCCCTTCTGTCTCC 58.488 47.826 0.00 0.00 0.00 3.71
1023 1101 4.512484 CCATTTCTCTTCCCTTCTGTCTC 58.488 47.826 0.00 0.00 0.00 3.36
1024 1102 3.308046 GCCATTTCTCTTCCCTTCTGTCT 60.308 47.826 0.00 0.00 0.00 3.41
1025 1103 3.013219 GCCATTTCTCTTCCCTTCTGTC 58.987 50.000 0.00 0.00 0.00 3.51
1026 1104 2.616510 CGCCATTTCTCTTCCCTTCTGT 60.617 50.000 0.00 0.00 0.00 3.41
1027 1105 2.012673 CGCCATTTCTCTTCCCTTCTG 58.987 52.381 0.00 0.00 0.00 3.02
1028 1106 1.065126 CCGCCATTTCTCTTCCCTTCT 60.065 52.381 0.00 0.00 0.00 2.85
1029 1107 1.383523 CCGCCATTTCTCTTCCCTTC 58.616 55.000 0.00 0.00 0.00 3.46
1030 1108 0.681243 GCCGCCATTTCTCTTCCCTT 60.681 55.000 0.00 0.00 0.00 3.95
1053 1131 1.204467 CTGCTCTTCAGGGAGACACTC 59.796 57.143 0.00 0.00 39.15 3.51
1056 1134 1.548357 GGCTGCTCTTCAGGGAGACA 61.548 60.000 0.00 0.00 43.06 3.41
1083 1161 2.255770 AGTCGGAAAGAGGGGAAGAT 57.744 50.000 0.00 0.00 0.00 2.40
1143 1221 4.689071 TCAAAGAAAGCTCGTGTGTTCTA 58.311 39.130 0.00 0.00 30.24 2.10
1197 1275 2.951642 TGCCAAAGAGAAAACTCACCAG 59.048 45.455 0.00 0.00 0.00 4.00
1200 1278 4.900635 TTCTGCCAAAGAGAAAACTCAC 57.099 40.909 0.00 0.00 35.91 3.51
1201 1279 5.707298 CCTATTCTGCCAAAGAGAAAACTCA 59.293 40.000 0.00 0.00 35.91 3.41
1202 1280 5.940470 TCCTATTCTGCCAAAGAGAAAACTC 59.060 40.000 0.00 0.00 35.91 3.01
1204 1282 5.940470 TCTCCTATTCTGCCAAAGAGAAAAC 59.060 40.000 0.00 0.00 35.91 2.43
1370 1451 7.485810 CATTCTTTGGATCAGAAATGTATGCA 58.514 34.615 0.00 0.00 33.94 3.96
1371 1452 7.925703 CATTCTTTGGATCAGAAATGTATGC 57.074 36.000 0.00 0.00 33.94 3.14
1428 1509 4.705023 GCTGGTACCCTCAAAACATTACAT 59.295 41.667 10.07 0.00 0.00 2.29
1429 1510 4.076394 GCTGGTACCCTCAAAACATTACA 58.924 43.478 10.07 0.00 0.00 2.41
1430 1511 4.076394 TGCTGGTACCCTCAAAACATTAC 58.924 43.478 10.07 0.00 0.00 1.89
1443 1524 6.509418 TCTTAAAATTGATGTGCTGGTACC 57.491 37.500 4.43 4.43 0.00 3.34
1446 1527 7.318141 CAGATTCTTAAAATTGATGTGCTGGT 58.682 34.615 0.00 0.00 0.00 4.00
1447 1528 6.255020 GCAGATTCTTAAAATTGATGTGCTGG 59.745 38.462 0.00 0.00 0.00 4.85
1448 1529 6.809689 TGCAGATTCTTAAAATTGATGTGCTG 59.190 34.615 0.00 0.00 0.00 4.41
1449 1530 6.927416 TGCAGATTCTTAAAATTGATGTGCT 58.073 32.000 0.00 0.00 0.00 4.40
1450 1531 7.618442 CATGCAGATTCTTAAAATTGATGTGC 58.382 34.615 0.00 0.00 0.00 4.57
1451 1532 7.276878 TGCATGCAGATTCTTAAAATTGATGTG 59.723 33.333 18.46 0.00 0.00 3.21
1452 1533 7.324935 TGCATGCAGATTCTTAAAATTGATGT 58.675 30.769 18.46 0.00 0.00 3.06
1453 1534 7.764695 TGCATGCAGATTCTTAAAATTGATG 57.235 32.000 18.46 0.00 0.00 3.07
1455 1536 7.548967 TCATGCATGCAGATTCTTAAAATTGA 58.451 30.769 26.69 16.10 0.00 2.57
1456 1537 7.764695 TCATGCATGCAGATTCTTAAAATTG 57.235 32.000 26.69 14.01 0.00 2.32
1459 1540 6.809689 CACTTCATGCATGCAGATTCTTAAAA 59.190 34.615 29.39 10.44 0.00 1.52
1460 1541 6.151480 TCACTTCATGCATGCAGATTCTTAAA 59.849 34.615 29.39 10.92 0.00 1.52
1461 1542 5.648960 TCACTTCATGCATGCAGATTCTTAA 59.351 36.000 29.39 11.59 0.00 1.85
1462 1543 5.187687 TCACTTCATGCATGCAGATTCTTA 58.812 37.500 29.39 6.71 0.00 2.10
1463 1544 4.014406 TCACTTCATGCATGCAGATTCTT 58.986 39.130 29.39 6.94 0.00 2.52
1464 1545 3.617284 TCACTTCATGCATGCAGATTCT 58.383 40.909 29.39 5.62 0.00 2.40
1465 1546 4.365899 TTCACTTCATGCATGCAGATTC 57.634 40.909 29.39 0.00 0.00 2.52
1466 1547 4.794278 TTTCACTTCATGCATGCAGATT 57.206 36.364 29.39 8.37 0.00 2.40
1467 1548 4.461431 TCTTTTCACTTCATGCATGCAGAT 59.539 37.500 29.39 13.13 0.00 2.90
1468 1549 3.822167 TCTTTTCACTTCATGCATGCAGA 59.178 39.130 29.39 19.27 0.00 4.26
1469 1550 4.168922 TCTTTTCACTTCATGCATGCAG 57.831 40.909 26.69 22.56 0.00 4.41
1470 1551 4.218852 TCATCTTTTCACTTCATGCATGCA 59.781 37.500 25.04 25.04 0.00 3.96
1471 1552 4.740268 TCATCTTTTCACTTCATGCATGC 58.260 39.130 22.25 11.82 0.00 4.06
1472 1553 7.827819 AATTCATCTTTTCACTTCATGCATG 57.172 32.000 21.07 21.07 0.00 4.06
1473 1554 8.717821 CAAAATTCATCTTTTCACTTCATGCAT 58.282 29.630 0.00 0.00 0.00 3.96
1474 1555 7.711772 ACAAAATTCATCTTTTCACTTCATGCA 59.288 29.630 0.00 0.00 0.00 3.96
1475 1556 8.080083 ACAAAATTCATCTTTTCACTTCATGC 57.920 30.769 0.00 0.00 0.00 4.06
1476 1557 9.251792 TGACAAAATTCATCTTTTCACTTCATG 57.748 29.630 0.00 0.00 0.00 3.07
1477 1558 9.472361 CTGACAAAATTCATCTTTTCACTTCAT 57.528 29.630 0.00 0.00 0.00 2.57
1478 1559 7.922278 CCTGACAAAATTCATCTTTTCACTTCA 59.078 33.333 0.00 0.00 0.00 3.02
1479 1560 7.922811 ACCTGACAAAATTCATCTTTTCACTTC 59.077 33.333 0.00 0.00 0.00 3.01
1480 1561 7.785033 ACCTGACAAAATTCATCTTTTCACTT 58.215 30.769 0.00 0.00 0.00 3.16
1481 1562 7.068593 TGACCTGACAAAATTCATCTTTTCACT 59.931 33.333 0.00 0.00 0.00 3.41
1482 1563 7.168135 GTGACCTGACAAAATTCATCTTTTCAC 59.832 37.037 0.00 0.00 0.00 3.18
1483 1564 7.147932 TGTGACCTGACAAAATTCATCTTTTCA 60.148 33.333 0.00 0.00 0.00 2.69
1484 1565 7.202526 TGTGACCTGACAAAATTCATCTTTTC 58.797 34.615 0.00 0.00 0.00 2.29
1506 1587 3.254166 CCTTTCCTCTGGTGAACAATGTG 59.746 47.826 0.00 0.00 0.00 3.21
1605 1686 3.511477 AGTGACACAAGGACAGGATAGT 58.489 45.455 8.59 0.00 0.00 2.12
1653 1734 7.346751 ACGCAAAAACCATCCTAAATATCAT 57.653 32.000 0.00 0.00 0.00 2.45
1791 1872 8.616076 GCTGCTGTGTTCATAAAAAGAGTATAT 58.384 33.333 0.00 0.00 0.00 0.86
1792 1873 7.606073 TGCTGCTGTGTTCATAAAAAGAGTATA 59.394 33.333 0.00 0.00 0.00 1.47
1793 1874 6.430925 TGCTGCTGTGTTCATAAAAAGAGTAT 59.569 34.615 0.00 0.00 0.00 2.12
1794 1875 5.762711 TGCTGCTGTGTTCATAAAAAGAGTA 59.237 36.000 0.00 0.00 0.00 2.59
1795 1876 4.580167 TGCTGCTGTGTTCATAAAAAGAGT 59.420 37.500 0.00 0.00 0.00 3.24
1798 1879 3.983344 GGTGCTGCTGTGTTCATAAAAAG 59.017 43.478 0.00 0.00 0.00 2.27
1806 1887 1.156736 AATACGGTGCTGCTGTGTTC 58.843 50.000 0.00 0.00 33.31 3.18
1818 1899 5.299279 CCCTGCTTAATCAATGAAATACGGT 59.701 40.000 0.00 0.00 0.00 4.83
1840 1921 8.803397 AACTACTCCATGTAATTTAACTTCCC 57.197 34.615 0.00 0.00 0.00 3.97
1947 2098 2.500504 GAGAAGGATCCGTTAACCAGGT 59.499 50.000 5.98 0.00 0.00 4.00
1948 2099 2.481449 CGAGAAGGATCCGTTAACCAGG 60.481 54.545 5.98 0.00 0.00 4.45
1949 2100 2.481449 CCGAGAAGGATCCGTTAACCAG 60.481 54.545 5.98 0.00 45.00 4.00
1962 2113 4.655762 TGAATGATGTACTCCGAGAAGG 57.344 45.455 1.33 0.00 42.97 3.46
2016 2167 4.471025 TGATGAGTATGAAAAGGAGAGGCA 59.529 41.667 0.00 0.00 0.00 4.75
2032 2183 3.767673 AGCAAAGCAAATCCATGATGAGT 59.232 39.130 0.00 0.00 0.00 3.41
2050 2201 2.048222 CTTCAGACCGGCGAGCAA 60.048 61.111 9.30 0.00 0.00 3.91
2091 2257 5.125417 GCAAAGTTCTATGCTTAACCATCCA 59.875 40.000 0.00 0.00 39.46 3.41
2146 2312 4.965814 GCTGACATCTTCAATATCAGGGA 58.034 43.478 0.00 0.00 37.78 4.20
2200 2366 0.178990 GGTTGAAGGACCAGTTGCCT 60.179 55.000 0.00 0.00 39.57 4.75
2232 2404 5.123661 TGTGATCGCATCTAATCAGCAAAAA 59.876 36.000 4.45 0.00 32.76 1.94
2240 2412 4.993584 AGGTCAATGTGATCGCATCTAATC 59.006 41.667 21.52 10.61 31.44 1.75
2271 2443 9.413048 GATCTATTTAGTATGTTGTAGCCTGAC 57.587 37.037 0.00 0.00 0.00 3.51
2487 3086 4.082136 GCTTCTAGTATGGGGGATACTTCG 60.082 50.000 0.00 0.00 44.26 3.79
2536 3135 3.375299 GCTTTGCATCCGATCAAGTAACT 59.625 43.478 0.00 0.00 0.00 2.24
2577 4496 2.466846 TGCTAGATAGTTCAGGGCACA 58.533 47.619 0.00 0.00 0.00 4.57
2704 4623 6.588756 TCAGTAATGGTGACGACTTTATGTTC 59.411 38.462 0.00 0.00 0.00 3.18
2744 4663 1.076192 CAGATGGATGGGGATGGGC 59.924 63.158 0.00 0.00 0.00 5.36
2745 4664 1.070127 ACCAGATGGATGGGGATGGG 61.070 60.000 5.72 0.00 45.25 4.00
2746 4665 1.632409 CTACCAGATGGATGGGGATGG 59.368 57.143 5.72 0.00 45.25 3.51
2747 4666 2.304180 GTCTACCAGATGGATGGGGATG 59.696 54.545 5.72 0.00 45.25 3.51
2750 4669 1.059913 GGTCTACCAGATGGATGGGG 58.940 60.000 5.72 0.00 45.25 4.96
2761 4680 3.740397 CACGGCGTCGGTCTACCA 61.740 66.667 16.39 0.00 41.39 3.25
2796 4715 2.834549 CTCTGTCTCCAGCTTTCCCTTA 59.165 50.000 0.00 0.00 38.66 2.69
2814 4733 2.745152 GCTCGTCTCTAGAAGGCTCTCT 60.745 54.545 0.00 0.00 32.70 3.10
3007 4926 0.947244 CCCGATAGCAGCAATTCACC 59.053 55.000 0.00 0.00 0.00 4.02
3018 4937 1.032114 AAGGCAGCAAACCCGATAGC 61.032 55.000 0.00 0.00 0.00 2.97
3019 4938 2.325583 TAAGGCAGCAAACCCGATAG 57.674 50.000 0.00 0.00 0.00 2.08
3021 4940 1.463674 CTTAAGGCAGCAAACCCGAT 58.536 50.000 0.00 0.00 0.00 4.18
3023 4942 1.212751 GCTTAAGGCAGCAAACCCG 59.787 57.895 4.29 0.00 39.83 5.28
3024 4943 1.184970 TGGCTTAAGGCAGCAAACCC 61.185 55.000 26.43 5.40 46.12 4.11
3025 4944 2.350738 TGGCTTAAGGCAGCAAACC 58.649 52.632 26.43 6.12 46.12 3.27
3033 4952 4.967036 AGATACAGAAGATGGCTTAAGGC 58.033 43.478 21.52 21.52 41.50 4.35
3034 4953 6.586344 TCAAGATACAGAAGATGGCTTAAGG 58.414 40.000 4.29 0.00 33.61 2.69
3035 4954 6.202570 GCTCAAGATACAGAAGATGGCTTAAG 59.797 42.308 0.00 0.00 33.61 1.85
3036 4955 6.051717 GCTCAAGATACAGAAGATGGCTTAA 58.948 40.000 0.00 0.00 33.61 1.85
3037 4956 5.365025 AGCTCAAGATACAGAAGATGGCTTA 59.635 40.000 0.00 0.00 33.61 3.09
3058 4977 1.484038 TCCTGTTGCAAAACCAAGCT 58.516 45.000 0.00 0.00 0.00 3.74
3090 5009 0.036388 TGCCGAGGACCTTGATGAAC 60.036 55.000 10.67 0.00 0.00 3.18
3189 5108 6.425721 CGAGGAACAGTTTGTTAATGACCTTA 59.574 38.462 0.00 0.00 41.28 2.69
3224 5146 5.310409 ACCCATGGATATAGAGTGGTTTG 57.690 43.478 15.22 0.00 0.00 2.93
3226 5148 7.527196 CGAATAACCCATGGATATAGAGTGGTT 60.527 40.741 15.22 7.11 38.35 3.67
3237 5159 2.979678 ACTAGGCGAATAACCCATGGAT 59.020 45.455 15.22 4.04 0.00 3.41
3283 5228 2.696187 TGCATTGCATATCAAGCACCAT 59.304 40.909 7.38 0.00 42.54 3.55
3289 5234 2.288213 CCAGCCTGCATTGCATATCAAG 60.288 50.000 12.53 0.00 38.13 3.02
3412 5365 3.160679 AGCTGTACTTTTTCAGGGCAT 57.839 42.857 0.00 0.00 32.94 4.40
3416 5369 7.387948 ACACTGTAATAGCTGTACTTTTTCAGG 59.612 37.037 0.00 1.51 38.31 3.86
3458 5411 1.796151 CTGCCATCGTTGCATCGTT 59.204 52.632 16.21 6.02 38.22 3.85
3675 5628 1.683025 CCATGAGCCATGTGCCCAA 60.683 57.895 12.36 0.00 39.94 4.12
3809 5763 2.246719 ATGCCACGAGAGAATTAGGC 57.753 50.000 0.00 0.00 42.32 3.93
3830 5787 5.789710 ATAAACTGAACCGAAATACACCG 57.210 39.130 0.00 0.00 0.00 4.94
3864 5821 8.175716 GGTTCCGTTCTTAGAAAACTGATATTG 58.824 37.037 0.00 0.00 0.00 1.90
3965 6242 3.588842 TCCCTATTCTATTGGCATGGGAG 59.411 47.826 0.00 0.00 37.56 4.30
3968 6245 3.074390 TGGTCCCTATTCTATTGGCATGG 59.926 47.826 0.00 0.00 0.00 3.66
3990 6267 2.062177 CACGGGTCGGGGAATAGGT 61.062 63.158 0.00 0.00 0.00 3.08
3998 6275 0.462937 TTATCATTGCACGGGTCGGG 60.463 55.000 0.00 0.00 0.00 5.14
3999 6276 0.655733 GTTATCATTGCACGGGTCGG 59.344 55.000 0.00 0.00 0.00 4.79
4000 6277 0.300491 CGTTATCATTGCACGGGTCG 59.700 55.000 0.00 0.00 0.00 4.79
4001 6278 1.593006 CTCGTTATCATTGCACGGGTC 59.407 52.381 0.00 0.00 34.61 4.46
4002 6279 1.651987 CTCGTTATCATTGCACGGGT 58.348 50.000 0.00 0.00 34.61 5.28
4003 6280 0.937304 CCTCGTTATCATTGCACGGG 59.063 55.000 0.00 0.00 34.61 5.28
4004 6281 1.651987 ACCTCGTTATCATTGCACGG 58.348 50.000 0.00 0.00 34.61 4.94
4005 6282 3.863424 AGTTACCTCGTTATCATTGCACG 59.137 43.478 0.00 0.00 35.18 5.34
4006 6283 5.447279 CCAAGTTACCTCGTTATCATTGCAC 60.447 44.000 0.00 0.00 0.00 4.57
4007 6284 4.634004 CCAAGTTACCTCGTTATCATTGCA 59.366 41.667 0.00 0.00 0.00 4.08
4009 6286 4.035208 GGCCAAGTTACCTCGTTATCATTG 59.965 45.833 0.00 0.00 0.00 2.82
4010 6287 4.196971 GGCCAAGTTACCTCGTTATCATT 58.803 43.478 0.00 0.00 0.00 2.57
4011 6288 3.433173 GGGCCAAGTTACCTCGTTATCAT 60.433 47.826 4.39 0.00 0.00 2.45
4012 6289 2.093341 GGGCCAAGTTACCTCGTTATCA 60.093 50.000 4.39 0.00 0.00 2.15
4014 6291 1.910671 TGGGCCAAGTTACCTCGTTAT 59.089 47.619 2.13 0.00 0.00 1.89
4016 6293 0.036306 CTGGGCCAAGTTACCTCGTT 59.964 55.000 8.04 0.00 0.00 3.85
4017 6294 1.677552 CTGGGCCAAGTTACCTCGT 59.322 57.895 8.04 0.00 0.00 4.18
4018 6295 1.745489 GCTGGGCCAAGTTACCTCG 60.745 63.158 9.48 0.00 0.00 4.63
4019 6296 4.320910 GCTGGGCCAAGTTACCTC 57.679 61.111 9.48 0.00 0.00 3.85
4045 6322 1.866015 AAAATAAGCAAGGGAGCCCC 58.134 50.000 0.91 2.16 45.90 5.80
4068 6345 9.440773 AAGAAGCAAAAGAAAGAAAACAGAAAT 57.559 25.926 0.00 0.00 0.00 2.17
4074 6351 9.877137 TTTTTGAAGAAGCAAAAGAAAGAAAAC 57.123 25.926 0.00 0.00 45.31 2.43
4101 6378 5.266733 TGCGTAAGTATTTATCCCGAACT 57.733 39.130 0.00 0.00 41.68 3.01
4134 6414 9.521503 TCATAAACATTTTTGAATTCGTGAACA 57.478 25.926 0.04 0.00 0.00 3.18
4183 6464 4.351131 ACAAAAACTGTCCGTCAAAGTC 57.649 40.909 0.00 0.00 29.87 3.01
4185 6466 7.486551 TCAAAATACAAAAACTGTCCGTCAAAG 59.513 33.333 0.00 0.00 39.64 2.77
4191 6472 7.357206 CGTTCATCAAAATACAAAAACTGTCCG 60.357 37.037 0.00 0.00 39.64 4.79
4193 6474 8.555166 TCGTTCATCAAAATACAAAAACTGTC 57.445 30.769 0.00 0.00 39.64 3.51
4315 6597 8.905103 AATACGTCCATACATTTAAAAACTGC 57.095 30.769 0.00 0.00 0.00 4.40
4333 6615 7.721286 ATCTTCATCCATCTCAAAATACGTC 57.279 36.000 0.00 0.00 0.00 4.34
4336 6618 9.525409 CCAAAATCTTCATCCATCTCAAAATAC 57.475 33.333 0.00 0.00 0.00 1.89
4345 6627 8.853126 TGTCATATTCCAAAATCTTCATCCATC 58.147 33.333 0.00 0.00 0.00 3.51
4393 6695 8.735692 ATGTGGTCATTGAATTCAAAGTTTTT 57.264 26.923 23.91 4.47 39.55 1.94
4395 6697 8.735692 AAATGTGGTCATTGAATTCAAAGTTT 57.264 26.923 23.91 11.94 42.60 2.66
4396 6698 8.614346 CAAAATGTGGTCATTGAATTCAAAGTT 58.386 29.630 23.91 8.98 42.60 2.66
4579 6915 1.623163 TCCGGTTTTGGGAACATTCC 58.377 50.000 0.00 1.70 46.82 3.01
4625 6962 2.099098 CACACCCTATTTGAATTCGGGC 59.901 50.000 13.57 0.00 38.50 6.13
4628 6965 4.701956 AAGCACACCCTATTTGAATTCG 57.298 40.909 0.04 0.00 0.00 3.34
4639 6976 1.021968 GTTGAACGAAAGCACACCCT 58.978 50.000 0.00 0.00 0.00 4.34
4640 6977 0.736053 TGTTGAACGAAAGCACACCC 59.264 50.000 0.00 0.00 0.00 4.61
4641 6978 2.553079 TTGTTGAACGAAAGCACACC 57.447 45.000 0.00 0.00 0.00 4.16
4642 6979 3.881630 GTTTGTTGAACGAAAGCACAC 57.118 42.857 0.00 0.00 0.00 3.82
4653 6990 0.472471 AGGAGCTCCCGTTTGTTGAA 59.528 50.000 29.54 0.00 40.87 2.69
4654 6991 1.344065 TAGGAGCTCCCGTTTGTTGA 58.656 50.000 29.54 0.65 40.87 3.18
4655 6992 2.403252 ATAGGAGCTCCCGTTTGTTG 57.597 50.000 29.54 0.00 40.87 3.33
4656 6993 4.262506 GCTATATAGGAGCTCCCGTTTGTT 60.263 45.833 29.54 11.45 40.87 2.83
4657 6994 3.258622 GCTATATAGGAGCTCCCGTTTGT 59.741 47.826 29.54 12.24 40.87 2.83
4658 6995 3.673594 CGCTATATAGGAGCTCCCGTTTG 60.674 52.174 29.54 15.73 40.87 2.93
4659 6996 2.492484 CGCTATATAGGAGCTCCCGTTT 59.508 50.000 29.54 13.43 40.87 3.60
4660 6997 2.093106 CGCTATATAGGAGCTCCCGTT 58.907 52.381 29.54 16.27 40.87 4.44
4661 6998 1.752683 CGCTATATAGGAGCTCCCGT 58.247 55.000 29.54 19.85 40.87 5.28
4663 7000 0.382515 CGCGCTATATAGGAGCTCCC 59.617 60.000 29.54 10.94 37.81 4.30
4664 7001 0.382515 CCGCGCTATATAGGAGCTCC 59.617 60.000 26.22 26.22 37.81 4.70
4665 7002 0.248702 GCCGCGCTATATAGGAGCTC 60.249 60.000 4.71 4.71 37.81 4.09
4666 7003 0.965866 TGCCGCGCTATATAGGAGCT 60.966 55.000 11.72 0.00 37.81 4.09
4668 7005 2.586258 AATGCCGCGCTATATAGGAG 57.414 50.000 11.72 3.93 0.00 3.69
4671 7008 2.893637 AGGAAATGCCGCGCTATATAG 58.106 47.619 5.56 5.30 43.43 1.31
4672 7009 4.665833 ATAGGAAATGCCGCGCTATATA 57.334 40.909 5.56 0.00 43.43 0.86
4673 7010 3.543680 ATAGGAAATGCCGCGCTATAT 57.456 42.857 5.56 0.00 43.43 0.86
4674 7011 3.328382 AATAGGAAATGCCGCGCTATA 57.672 42.857 5.56 0.00 43.43 1.31
4676 7013 1.961793 AAATAGGAAATGCCGCGCTA 58.038 45.000 5.56 0.00 43.43 4.26
4677 7014 1.873591 CTAAATAGGAAATGCCGCGCT 59.126 47.619 5.56 0.00 43.43 5.92
4679 7016 1.398451 CGCTAAATAGGAAATGCCGCG 60.398 52.381 0.00 0.00 43.43 6.46
4680 7017 1.663161 GCGCTAAATAGGAAATGCCGC 60.663 52.381 0.00 0.00 43.43 6.53
4681 7018 1.069227 GGCGCTAAATAGGAAATGCCG 60.069 52.381 7.64 0.00 43.43 5.69
4682 7019 1.953686 TGGCGCTAAATAGGAAATGCC 59.046 47.619 7.64 0.00 41.56 4.40
4683 7020 2.357637 TGTGGCGCTAAATAGGAAATGC 59.642 45.455 7.64 0.00 0.00 3.56
4684 7021 3.003689 CCTGTGGCGCTAAATAGGAAATG 59.996 47.826 7.64 0.00 0.00 2.32
4700 7549 2.670251 TAAAACCGGCGCCTGTGG 60.670 61.111 24.93 20.41 0.00 4.17
4701 7550 1.512156 AACTAAAACCGGCGCCTGTG 61.512 55.000 24.93 13.96 0.00 3.66
4702 7551 1.228033 AACTAAAACCGGCGCCTGT 60.228 52.632 26.68 22.69 0.00 4.00
4703 7552 1.209127 CAACTAAAACCGGCGCCTG 59.791 57.895 26.68 21.87 0.00 4.85
4704 7553 0.820482 AACAACTAAAACCGGCGCCT 60.820 50.000 26.68 7.77 0.00 5.52
4705 7554 0.031043 AAACAACTAAAACCGGCGCC 59.969 50.000 19.07 19.07 0.00 6.53
4706 7555 1.401530 GAAACAACTAAAACCGGCGC 58.598 50.000 0.00 0.00 0.00 6.53
4707 7556 1.660896 CGGAAACAACTAAAACCGGCG 60.661 52.381 0.00 0.00 37.28 6.46
4708 7557 1.927268 GCGGAAACAACTAAAACCGGC 60.927 52.381 0.00 0.00 40.55 6.13
4709 7558 1.334243 TGCGGAAACAACTAAAACCGG 59.666 47.619 0.00 0.00 40.55 5.28
4710 7559 2.759538 TGCGGAAACAACTAAAACCG 57.240 45.000 0.00 0.00 42.63 4.44
4711 7560 3.552699 GGTTTGCGGAAACAACTAAAACC 59.447 43.478 29.78 9.93 42.95 3.27
4712 7561 3.241091 CGGTTTGCGGAAACAACTAAAAC 59.759 43.478 29.78 11.88 42.95 2.43
4714 7563 2.223525 CCGGTTTGCGGAAACAACTAAA 60.224 45.455 29.78 0.00 42.95 1.85
4715 7564 1.334243 CCGGTTTGCGGAAACAACTAA 59.666 47.619 29.78 0.00 42.95 2.24
4716 7565 0.945813 CCGGTTTGCGGAAACAACTA 59.054 50.000 29.78 0.00 42.95 2.24
4717 7566 1.731093 CCGGTTTGCGGAAACAACT 59.269 52.632 29.78 0.00 42.95 3.16
4738 7587 4.087892 ACCTAGCACCGCTGCAGG 62.088 66.667 17.12 15.40 46.97 4.85
4739 7588 2.816958 CACCTAGCACCGCTGCAG 60.817 66.667 10.11 10.11 46.97 4.41
4757 7606 2.259204 GTTTTAAACGGGCCGGCC 59.741 61.111 38.57 38.57 0.00 6.13
4758 7607 2.259204 GGTTTTAAACGGGCCGGC 59.741 61.111 31.78 21.18 0.00 6.13
4760 7609 1.307355 ATCGGGTTTTAAACGGGCCG 61.307 55.000 27.06 27.06 35.79 6.13
4761 7610 0.889994 AATCGGGTTTTAAACGGGCC 59.110 50.000 0.00 0.00 0.00 5.80
4762 7611 2.598589 GAAATCGGGTTTTAAACGGGC 58.401 47.619 1.52 0.00 0.00 6.13
4763 7612 2.094597 GGGAAATCGGGTTTTAAACGGG 60.095 50.000 1.52 0.00 0.00 5.28
4764 7613 2.094597 GGGGAAATCGGGTTTTAAACGG 60.095 50.000 1.52 0.00 0.00 4.44
4765 7614 2.094597 GGGGGAAATCGGGTTTTAAACG 60.095 50.000 1.52 0.00 0.00 3.60
4766 7615 2.898612 TGGGGGAAATCGGGTTTTAAAC 59.101 45.455 0.00 0.00 0.00 2.01
4769 7618 1.272592 GGTGGGGGAAATCGGGTTTTA 60.273 52.381 0.00 0.00 0.00 1.52
4773 7622 3.344176 GGGTGGGGGAAATCGGGT 61.344 66.667 0.00 0.00 0.00 5.28
4774 7623 4.137615 GGGGTGGGGGAAATCGGG 62.138 72.222 0.00 0.00 0.00 5.14
4775 7624 4.137615 GGGGGTGGGGGAAATCGG 62.138 72.222 0.00 0.00 0.00 4.18
4795 7644 2.760387 GAACTGGACGACCACGGGAC 62.760 65.000 1.37 0.00 41.77 4.46
4796 7645 2.522436 AACTGGACGACCACGGGA 60.522 61.111 1.37 0.00 41.77 5.14
4797 7646 2.048503 GAACTGGACGACCACGGG 60.049 66.667 1.37 0.00 41.77 5.28
4798 7647 0.249741 AAAGAACTGGACGACCACGG 60.250 55.000 1.37 0.00 41.77 4.94
4800 7649 1.509703 GGAAAGAACTGGACGACCAC 58.490 55.000 1.37 0.00 41.77 4.16
4801 7650 0.395312 GGGAAAGAACTGGACGACCA 59.605 55.000 6.42 6.42 44.76 4.02
4802 7651 0.321387 GGGGAAAGAACTGGACGACC 60.321 60.000 0.00 0.00 0.00 4.79
4803 7652 0.321387 GGGGGAAAGAACTGGACGAC 60.321 60.000 0.00 0.00 0.00 4.34
4805 7654 1.375523 CGGGGGAAAGAACTGGACG 60.376 63.158 0.00 0.00 0.00 4.79
4806 7655 0.321387 GTCGGGGGAAAGAACTGGAC 60.321 60.000 0.00 0.00 0.00 4.02
4808 7657 4.716003 GTCGGGGGAAAGAACTGG 57.284 61.111 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.