Multiple sequence alignment - TraesCS5D01G043900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G043900 chr5D 100.000 3098 0 0 1 3098 43099350 43102447 0.000000e+00 5722.0
1 TraesCS5D01G043900 chr5D 86.082 1516 139 36 997 2483 43135041 43136513 0.000000e+00 1565.0
2 TraesCS5D01G043900 chr5D 85.271 1127 133 16 1017 2133 42809072 42807969 0.000000e+00 1131.0
3 TraesCS5D01G043900 chr5D 85.308 1089 132 11 1017 2094 43092105 43093176 0.000000e+00 1099.0
4 TraesCS5D01G043900 chr5D 87.631 477 44 6 479 945 43134399 43134870 9.770000e-150 540.0
5 TraesCS5D01G043900 chr5D 84.690 516 67 8 1 508 43133887 43134398 3.570000e-139 505.0
6 TraesCS5D01G043900 chr5D 77.909 593 55 30 2286 2823 42807863 42807292 1.810000e-77 300.0
7 TraesCS5D01G043900 chr5D 77.860 271 24 21 2409 2647 43136514 43136780 5.390000e-28 135.0
8 TraesCS5D01G043900 chr5D 82.500 120 12 8 2169 2282 54918530 54918414 2.540000e-16 97.1
9 TraesCS5D01G043900 chr5A 91.748 1842 93 19 650 2454 32992216 32994035 0.000000e+00 2505.0
10 TraesCS5D01G043900 chr5A 84.187 1132 135 21 1000 2120 32998987 33000085 0.000000e+00 1059.0
11 TraesCS5D01G043900 chr5A 83.470 1095 140 14 1017 2089 43270308 43269233 0.000000e+00 981.0
12 TraesCS5D01G043900 chr5A 83.196 1095 143 17 1017 2089 42735764 42734689 0.000000e+00 965.0
13 TraesCS5D01G043900 chr5A 85.984 371 30 7 2538 2897 32994053 32994412 8.110000e-101 377.0
14 TraesCS5D01G043900 chr5A 85.985 264 33 4 22 283 32941463 32941724 2.350000e-71 279.0
15 TraesCS5D01G043900 chr5A 82.390 318 29 15 622 927 32998183 32998485 5.130000e-63 252.0
16 TraesCS5D01G043900 chr5A 82.877 146 13 8 2169 2309 42734747 42734609 1.510000e-23 121.0
17 TraesCS5D01G043900 chr5A 84.167 120 10 8 2169 2282 43269291 43269175 1.170000e-19 108.0
18 TraesCS5D01G043900 chr5B 82.961 1520 197 36 1001 2489 40775557 40777045 0.000000e+00 1315.0
19 TraesCS5D01G043900 chr5B 84.957 1057 128 12 998 2040 40458462 40459501 0.000000e+00 1042.0
20 TraesCS5D01G043900 chr5B 88.442 199 18 4 2203 2398 40481009 40481205 5.160000e-58 235.0
21 TraesCS5D01G043900 chr5B 81.481 297 30 12 2203 2489 40465146 40465427 1.450000e-53 220.0
22 TraesCS5D01G043900 chr5B 85.484 124 8 10 2165 2282 57497669 57497550 1.510000e-23 121.0
23 TraesCS5D01G043900 chr6B 82.126 207 34 3 28 233 430561249 430561045 1.140000e-39 174.0
24 TraesCS5D01G043900 chr4D 82.412 199 33 2 36 233 477198498 477198695 4.110000e-39 172.0
25 TraesCS5D01G043900 chrUn 94.737 38 2 0 2361 2398 434713746 434713783 3.340000e-05 60.2
26 TraesCS5D01G043900 chr4B 94.737 38 2 0 2361 2398 16428196 16428233 3.340000e-05 60.2
27 TraesCS5D01G043900 chr4B 94.737 38 2 0 2361 2398 229683454 229683417 3.340000e-05 60.2
28 TraesCS5D01G043900 chr4B 94.737 38 2 0 2361 2398 369048106 369048069 3.340000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G043900 chr5D 43099350 43102447 3097 False 5722.00 5722 100.00000 1 3098 1 chr5D.!!$F2 3097
1 TraesCS5D01G043900 chr5D 43092105 43093176 1071 False 1099.00 1099 85.30800 1017 2094 1 chr5D.!!$F1 1077
2 TraesCS5D01G043900 chr5D 42807292 42809072 1780 True 715.50 1131 81.59000 1017 2823 2 chr5D.!!$R2 1806
3 TraesCS5D01G043900 chr5D 43133887 43136780 2893 False 686.25 1565 84.06575 1 2647 4 chr5D.!!$F3 2646
4 TraesCS5D01G043900 chr5A 32992216 33000085 7869 False 1048.25 2505 86.07725 622 2897 4 chr5A.!!$F2 2275
5 TraesCS5D01G043900 chr5A 43269175 43270308 1133 True 544.50 981 83.81850 1017 2282 2 chr5A.!!$R2 1265
6 TraesCS5D01G043900 chr5A 42734609 42735764 1155 True 543.00 965 83.03650 1017 2309 2 chr5A.!!$R1 1292
7 TraesCS5D01G043900 chr5B 40775557 40777045 1488 False 1315.00 1315 82.96100 1001 2489 1 chr5B.!!$F4 1488
8 TraesCS5D01G043900 chr5B 40458462 40459501 1039 False 1042.00 1042 84.95700 998 2040 1 chr5B.!!$F1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 458 0.107654 AAGGTAGATGAAGGCGTGCC 60.108 55.0 1.67 1.67 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2399 0.033503 TCTGAGGGCAGACCGATACA 60.034 55.0 0.0 0.0 45.88 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 72 2.292267 CGTATGCTCCCTCTTTGCAAT 58.708 47.619 0.00 0.00 40.24 3.56
68 75 4.260784 CGTATGCTCCCTCTTTGCAATAAC 60.261 45.833 0.00 0.00 40.24 1.89
70 77 3.495331 TGCTCCCTCTTTGCAATAACAA 58.505 40.909 0.00 0.00 33.48 2.83
117 124 6.639563 ACTATTGCAACAAGAGGTTTGTTTT 58.360 32.000 15.62 0.00 40.30 2.43
137 144 1.067295 AGAAACATGCCACTCAGGGA 58.933 50.000 0.00 0.00 44.34 4.20
143 150 2.300967 TGCCACTCAGGGATGGGAC 61.301 63.158 0.00 0.00 36.41 4.46
149 156 1.810606 CTCAGGGATGGGACGGATCG 61.811 65.000 0.00 0.00 0.00 3.69
190 197 3.372795 GTGACAACACTGACGGGAA 57.627 52.632 0.00 0.00 42.99 3.97
191 198 1.217882 GTGACAACACTGACGGGAAG 58.782 55.000 0.00 0.00 42.99 3.46
192 199 0.828022 TGACAACACTGACGGGAAGT 59.172 50.000 0.00 0.00 0.00 3.01
200 207 2.963371 GACGGGAAGTCGTGCTCT 59.037 61.111 0.00 0.00 43.96 4.09
201 208 1.444553 GACGGGAAGTCGTGCTCTG 60.445 63.158 0.00 0.00 43.96 3.35
202 209 2.811317 CGGGAAGTCGTGCTCTGC 60.811 66.667 0.00 0.00 0.00 4.26
203 210 2.811317 GGGAAGTCGTGCTCTGCG 60.811 66.667 0.00 0.00 0.00 5.18
249 257 2.528743 CCGCACGGATCTCATGCAC 61.529 63.158 2.01 0.00 39.39 4.57
250 258 1.810853 CGCACGGATCTCATGCACA 60.811 57.895 14.04 0.00 39.39 4.57
251 259 1.156034 CGCACGGATCTCATGCACAT 61.156 55.000 14.04 0.00 39.39 3.21
272 280 3.862124 CCGAGTGGCGACAAAGAG 58.138 61.111 0.00 0.00 46.06 2.85
277 285 2.286833 CGAGTGGCGACAAAGAGAAAAA 59.713 45.455 0.00 0.00 46.06 1.94
280 288 3.945285 AGTGGCGACAAAGAGAAAAAGAA 59.055 39.130 0.00 0.00 46.06 2.52
284 292 4.036380 GGCGACAAAGAGAAAAAGAAGGAA 59.964 41.667 0.00 0.00 0.00 3.36
285 293 4.970611 GCGACAAAGAGAAAAAGAAGGAAC 59.029 41.667 0.00 0.00 0.00 3.62
286 294 5.448632 GCGACAAAGAGAAAAAGAAGGAACA 60.449 40.000 0.00 0.00 0.00 3.18
292 300 9.855021 CAAAGAGAAAAAGAAGGAACAAAAGTA 57.145 29.630 0.00 0.00 0.00 2.24
296 304 6.895756 AGAAAAAGAAGGAACAAAAGTAGGGT 59.104 34.615 0.00 0.00 0.00 4.34
311 320 4.035102 GGTGGCGAGCCCTTCCTT 62.035 66.667 12.05 0.00 34.56 3.36
313 322 4.033776 TGGCGAGCCCTTCCTTGG 62.034 66.667 12.05 0.00 34.56 3.61
321 330 1.000896 CCCTTCCTTGGCGGTGAAT 60.001 57.895 0.00 0.00 0.00 2.57
324 333 1.683011 CCTTCCTTGGCGGTGAATGAT 60.683 52.381 0.00 0.00 0.00 2.45
329 338 1.399440 CTTGGCGGTGAATGATGACTG 59.601 52.381 0.00 0.00 0.00 3.51
330 339 1.026182 TGGCGGTGAATGATGACTGC 61.026 55.000 0.00 0.00 42.72 4.40
333 342 0.729116 CGGTGAATGATGACTGCCAC 59.271 55.000 0.00 0.00 0.00 5.01
336 345 1.131883 GTGAATGATGACTGCCACAGC 59.868 52.381 0.00 0.00 34.37 4.40
337 346 1.003928 TGAATGATGACTGCCACAGCT 59.996 47.619 0.00 0.00 40.80 4.24
338 347 2.236893 TGAATGATGACTGCCACAGCTA 59.763 45.455 0.00 0.00 40.80 3.32
391 400 4.308526 CAAGCATCTCCCTTGCGT 57.691 55.556 0.00 0.00 44.82 5.24
394 403 0.250901 AAGCATCTCCCTTGCGTTGT 60.251 50.000 0.00 0.00 44.82 3.32
401 410 2.739913 TCTCCCTTGCGTTGTTTATTCG 59.260 45.455 0.00 0.00 0.00 3.34
425 434 5.415221 GGACGAAAAGATTCAGAGAGATGT 58.585 41.667 0.00 0.00 35.15 3.06
438 447 6.857848 TCAGAGAGATGTGGATAAGGTAGAT 58.142 40.000 0.00 0.00 0.00 1.98
439 448 6.718912 TCAGAGAGATGTGGATAAGGTAGATG 59.281 42.308 0.00 0.00 0.00 2.90
449 458 0.107654 AAGGTAGATGAAGGCGTGCC 60.108 55.000 1.67 1.67 0.00 5.01
450 459 1.220749 GGTAGATGAAGGCGTGCCA 59.779 57.895 14.29 0.00 38.92 4.92
465 474 1.606668 GTGCCATTCCAAAAGACGTGA 59.393 47.619 0.00 0.00 0.00 4.35
468 477 2.487762 GCCATTCCAAAAGACGTGATGA 59.512 45.455 0.00 0.00 0.00 2.92
479 488 1.691976 GACGTGATGATGGGGTCCATA 59.308 52.381 0.00 0.00 45.26 2.74
531 570 3.001228 CGACATGTGGGTGATTATCAACG 59.999 47.826 1.15 0.00 34.15 4.10
533 572 2.411628 TGTGGGTGATTATCAACGGG 57.588 50.000 4.01 0.00 34.15 5.28
535 574 0.916086 TGGGTGATTATCAACGGGCT 59.084 50.000 4.01 0.00 34.15 5.19
536 575 1.308998 GGGTGATTATCAACGGGCTG 58.691 55.000 4.01 0.00 34.15 4.85
537 576 1.134220 GGGTGATTATCAACGGGCTGA 60.134 52.381 4.01 0.00 34.15 4.26
540 579 2.549754 GTGATTATCAACGGGCTGATGG 59.450 50.000 0.00 0.00 36.69 3.51
546 585 0.676466 CAACGGGCTGATGGTAAGCA 60.676 55.000 0.00 0.00 42.69 3.91
557 596 5.876460 GCTGATGGTAAGCATTTTCCAAAAT 59.124 36.000 0.00 0.00 40.52 1.82
595 636 8.694540 TGACCCTAAAAAGTAAAAACCCTAAAC 58.305 33.333 0.00 0.00 0.00 2.01
596 637 8.021898 ACCCTAAAAAGTAAAAACCCTAAACC 57.978 34.615 0.00 0.00 0.00 3.27
597 638 7.071071 ACCCTAAAAAGTAAAAACCCTAAACCC 59.929 37.037 0.00 0.00 0.00 4.11
613 654 2.228480 CCCGAGAAACCCTTCCCCA 61.228 63.158 0.00 0.00 31.28 4.96
617 658 0.328592 GAGAAACCCTTCCCCAGTCC 59.671 60.000 0.00 0.00 31.28 3.85
636 677 1.679898 CCACCACCCAACCTCTCTC 59.320 63.158 0.00 0.00 0.00 3.20
639 680 0.489567 ACCACCCAACCTCTCTCTCT 59.510 55.000 0.00 0.00 0.00 3.10
730 773 1.149288 AGGAACCCTAGTCAGTCACCA 59.851 52.381 0.00 0.00 28.47 4.17
752 796 1.135915 CACATCTCTCCCGTTCTCAGG 59.864 57.143 0.00 0.00 0.00 3.86
787 831 0.757188 TTCATCCCCGAGCTCTCTCC 60.757 60.000 12.85 0.00 35.94 3.71
792 836 1.531748 CCCGAGCTCTCTCCTCTCT 59.468 63.158 12.85 0.00 35.94 3.10
965 1092 1.418334 CTGGTGGCCTAGCTAGTCAT 58.582 55.000 19.31 0.00 0.00 3.06
970 1110 2.034878 TGGCCTAGCTAGTCATCACTG 58.965 52.381 19.31 2.75 33.62 3.66
1103 1288 3.328931 AGAATCAAGGAGTTGCTCAAGGA 59.671 43.478 0.00 0.00 33.23 3.36
1185 1385 2.460757 TCCCAAACGGTAACAGCTAC 57.539 50.000 0.00 0.00 0.00 3.58
1189 1389 1.136446 CAAACGGTAACAGCTACGCAC 60.136 52.381 0.00 0.00 0.00 5.34
1225 1425 4.940463 TGGGTACGTATCTGTTTATCTGC 58.060 43.478 5.69 0.00 0.00 4.26
1263 1463 2.680577 GCCAAAGATGTGAAGGCAAAG 58.319 47.619 0.00 0.00 44.59 2.77
1290 1490 1.967319 TCAGTGTTCTTGACAAGGGC 58.033 50.000 15.13 8.78 40.65 5.19
1314 1514 4.141711 GGAGAACCAGTGCCTTCATACATA 60.142 45.833 2.61 0.00 35.97 2.29
1375 1578 6.229733 TCAGATTGGGGTTTTGCTAATTTTG 58.770 36.000 0.00 0.00 0.00 2.44
1929 2153 2.754552 GCATAACTGCCATGGACTCAAA 59.245 45.455 18.40 0.00 42.88 2.69
1981 2206 5.105064 CCTTCAAATTTGGAGGCAATGATCT 60.105 40.000 28.75 0.00 46.46 2.75
2109 2334 4.160736 GTCAATTTGACCAGTACCTTGC 57.839 45.455 17.07 0.00 41.37 4.01
2110 2335 3.568007 GTCAATTTGACCAGTACCTTGCA 59.432 43.478 17.07 0.00 41.37 4.08
2111 2336 4.218417 GTCAATTTGACCAGTACCTTGCAT 59.782 41.667 17.07 0.00 41.37 3.96
2112 2337 4.218200 TCAATTTGACCAGTACCTTGCATG 59.782 41.667 0.00 0.00 0.00 4.06
2130 2374 5.744171 TGCATGTGTTGGTACTGATTATCT 58.256 37.500 0.00 0.00 0.00 1.98
2132 2381 7.508687 TGCATGTGTTGGTACTGATTATCTAT 58.491 34.615 0.00 0.00 0.00 1.98
2156 2405 8.987599 ATTTTGTATCTATTTTGCGTGTATCG 57.012 30.769 0.00 0.00 43.12 2.92
2159 2408 5.688621 TGTATCTATTTTGCGTGTATCGGTC 59.311 40.000 0.00 0.00 40.26 4.79
2168 2425 0.103208 GTGTATCGGTCTGCCCTCAG 59.897 60.000 0.00 0.00 41.67 3.35
2219 2476 2.634815 CTGACAGCAGCCAAGGATAT 57.365 50.000 0.00 0.00 34.95 1.63
2254 2519 5.866335 TTTTATTAGTACTTGCGTGTGGG 57.134 39.130 0.00 0.00 0.00 4.61
2259 2524 2.176889 AGTACTTGCGTGTGGGACTAT 58.823 47.619 0.00 0.00 0.00 2.12
2411 2683 6.079424 TCTGTATGCATTGCGTATACACTA 57.921 37.500 13.41 5.07 45.04 2.74
2439 2785 0.387878 CAGTGTGGAGACGAGTCTGC 60.388 60.000 16.27 16.27 46.53 4.26
2446 2795 0.793250 GAGACGAGTCTGCTTTTGCC 59.207 55.000 10.82 0.00 46.87 4.52
2457 2806 4.578105 GTCTGCTTTTGCCTGCTATATCTT 59.422 41.667 0.00 0.00 46.87 2.40
2458 2807 4.577693 TCTGCTTTTGCCTGCTATATCTTG 59.422 41.667 0.00 0.00 46.87 3.02
2525 2909 3.692257 ACCAGCCTGACTATATCATGC 57.308 47.619 0.00 0.00 46.29 4.06
2540 2924 6.757897 ATATCATGCTTCCGAAGTGAAAAA 57.242 33.333 9.87 0.00 0.00 1.94
2541 2925 4.488126 TCATGCTTCCGAAGTGAAAAAG 57.512 40.909 9.87 0.00 0.00 2.27
2558 2942 6.484977 GTGAAAAAGATCACCTCTCTCTGTTT 59.515 38.462 0.00 0.00 43.11 2.83
2559 2943 7.012799 GTGAAAAAGATCACCTCTCTCTGTTTT 59.987 37.037 0.00 0.00 43.11 2.43
2560 2944 7.557719 TGAAAAAGATCACCTCTCTCTGTTTTT 59.442 33.333 0.00 0.00 28.84 1.94
2566 2950 6.479972 TCACCTCTCTCTGTTTTTCAAGTA 57.520 37.500 0.00 0.00 0.00 2.24
2601 2993 7.536622 CAGTTTTGCTTGATTGAAGTGATCTAC 59.463 37.037 0.00 0.00 33.73 2.59
2622 3014 7.676947 TCTACACCTTTCTTAGCTTATGTTGT 58.323 34.615 0.00 0.00 0.00 3.32
2625 3017 6.998673 ACACCTTTCTTAGCTTATGTTGTTCT 59.001 34.615 0.00 0.00 0.00 3.01
2628 3020 7.719633 ACCTTTCTTAGCTTATGTTGTTCTTCA 59.280 33.333 0.00 0.00 0.00 3.02
2657 3060 5.074804 TGAATGATCCCAAATAGCCATGAG 58.925 41.667 0.00 0.00 0.00 2.90
2663 3066 0.590195 CAAATAGCCATGAGCCGAGC 59.410 55.000 0.00 0.00 45.47 5.03
2686 3089 0.980754 ACCATGTCGCCATGTAGGGA 60.981 55.000 5.62 0.00 45.83 4.20
2687 3090 0.180171 CCATGTCGCCATGTAGGGAA 59.820 55.000 5.62 0.00 45.83 3.97
2702 3105 3.372440 AGGGAAGCAAATCCTGTTAGG 57.628 47.619 3.61 0.00 39.57 2.69
2710 3113 3.876156 GCAAATCCTGTTAGGTAAGGGCA 60.876 47.826 0.00 0.00 36.53 5.36
2716 3119 5.690865 TCCTGTTAGGTAAGGGCATATTTG 58.309 41.667 0.00 0.00 36.53 2.32
2832 3235 3.145286 TGATTCATTTGTGCGAGGTTCA 58.855 40.909 0.00 0.00 0.00 3.18
2838 3241 3.678056 TTTGTGCGAGGTTCAGTAGAT 57.322 42.857 0.00 0.00 0.00 1.98
2929 3521 7.820648 AGTATTGATGGACAAATCAAGTGAAC 58.179 34.615 5.89 2.61 46.73 3.18
2935 3527 4.141505 TGGACAAATCAAGTGAACTCAGGA 60.142 41.667 0.00 0.00 0.00 3.86
2938 3530 6.092807 GGACAAATCAAGTGAACTCAGGATAC 59.907 42.308 0.00 0.00 0.00 2.24
2969 3561 1.206132 TGGCAGATATTGTTCGACCGT 59.794 47.619 0.00 0.00 0.00 4.83
2983 3577 1.712350 CGACCGTACTTGAGAAACACG 59.288 52.381 0.00 0.00 0.00 4.49
2988 3582 2.026507 CGTACTTGAGAAACACGCGATC 59.973 50.000 15.93 5.42 0.00 3.69
2992 3586 0.240145 TGAGAAACACGCGATCGAGT 59.760 50.000 21.57 20.30 41.09 4.18
3014 3608 2.294512 GCCATTAACTTGCCTAGGATGC 59.705 50.000 14.75 0.00 0.00 3.91
3018 3612 0.324943 AACTTGCCTAGGATGCGTGT 59.675 50.000 14.75 0.00 0.00 4.49
3019 3613 0.324943 ACTTGCCTAGGATGCGTGTT 59.675 50.000 14.75 0.00 0.00 3.32
3025 3619 2.432444 CCTAGGATGCGTGTTTTTGGA 58.568 47.619 1.05 0.00 0.00 3.53
3027 3621 0.958822 AGGATGCGTGTTTTTGGACC 59.041 50.000 0.00 0.00 0.00 4.46
3031 3625 0.948678 TGCGTGTTTTTGGACCTAGC 59.051 50.000 0.00 0.00 0.00 3.42
3033 3627 2.224329 TGCGTGTTTTTGGACCTAGCTA 60.224 45.455 0.00 0.00 0.00 3.32
3035 3629 3.863400 GCGTGTTTTTGGACCTAGCTAGA 60.863 47.826 22.70 0.00 0.00 2.43
3036 3630 4.504858 CGTGTTTTTGGACCTAGCTAGAT 58.495 43.478 22.70 4.28 0.00 1.98
3037 3631 4.567159 CGTGTTTTTGGACCTAGCTAGATC 59.433 45.833 22.70 15.03 0.00 2.75
3038 3632 5.488341 GTGTTTTTGGACCTAGCTAGATCA 58.512 41.667 22.70 13.33 0.00 2.92
3039 3633 6.116126 GTGTTTTTGGACCTAGCTAGATCAT 58.884 40.000 22.70 4.47 0.00 2.45
3040 3634 6.599638 GTGTTTTTGGACCTAGCTAGATCATT 59.400 38.462 22.70 0.58 0.00 2.57
3041 3635 6.599244 TGTTTTTGGACCTAGCTAGATCATTG 59.401 38.462 22.70 6.61 0.00 2.82
3042 3636 4.963318 TTGGACCTAGCTAGATCATTGG 57.037 45.455 22.70 6.86 0.00 3.16
3043 3637 2.634940 TGGACCTAGCTAGATCATTGGC 59.365 50.000 22.70 6.03 0.00 4.52
3045 3639 4.090090 GGACCTAGCTAGATCATTGGCTA 58.910 47.826 22.70 0.00 36.40 3.93
3046 3640 4.081917 GGACCTAGCTAGATCATTGGCTAC 60.082 50.000 22.70 0.00 36.40 3.58
3048 3642 5.893500 ACCTAGCTAGATCATTGGCTACTA 58.106 41.667 22.70 0.00 36.40 1.82
3049 3643 6.498538 ACCTAGCTAGATCATTGGCTACTAT 58.501 40.000 22.70 0.00 36.40 2.12
3050 3644 6.957020 ACCTAGCTAGATCATTGGCTACTATT 59.043 38.462 22.70 0.00 36.40 1.73
3051 3645 7.093552 ACCTAGCTAGATCATTGGCTACTATTG 60.094 40.741 22.70 1.15 36.40 1.90
3052 3646 5.486526 AGCTAGATCATTGGCTACTATTGC 58.513 41.667 0.00 0.00 32.94 3.56
3053 3647 5.248020 AGCTAGATCATTGGCTACTATTGCT 59.752 40.000 0.00 0.00 32.94 3.91
3054 3648 5.350914 GCTAGATCATTGGCTACTATTGCTG 59.649 44.000 0.00 0.00 0.00 4.41
3055 3649 5.301835 AGATCATTGGCTACTATTGCTGT 57.698 39.130 0.00 0.00 0.00 4.40
3056 3650 5.303971 AGATCATTGGCTACTATTGCTGTC 58.696 41.667 0.00 0.00 0.00 3.51
3057 3651 4.760530 TCATTGGCTACTATTGCTGTCT 57.239 40.909 0.00 0.00 0.00 3.41
3058 3652 5.102953 TCATTGGCTACTATTGCTGTCTT 57.897 39.130 0.00 0.00 0.00 3.01
3059 3653 5.500234 TCATTGGCTACTATTGCTGTCTTT 58.500 37.500 0.00 0.00 0.00 2.52
3060 3654 5.355071 TCATTGGCTACTATTGCTGTCTTTG 59.645 40.000 0.00 0.00 0.00 2.77
3064 3658 6.414732 TGGCTACTATTGCTGTCTTTGTTAT 58.585 36.000 0.00 0.00 0.00 1.89
3065 3659 6.538742 TGGCTACTATTGCTGTCTTTGTTATC 59.461 38.462 0.00 0.00 0.00 1.75
3066 3660 6.763610 GGCTACTATTGCTGTCTTTGTTATCT 59.236 38.462 0.00 0.00 0.00 1.98
3067 3661 7.042389 GGCTACTATTGCTGTCTTTGTTATCTC 60.042 40.741 0.00 0.00 0.00 2.75
3072 3666 5.344743 TGCTGTCTTTGTTATCTCTAGGG 57.655 43.478 0.00 0.00 0.00 3.53
3073 3667 4.777896 TGCTGTCTTTGTTATCTCTAGGGT 59.222 41.667 0.00 0.00 0.00 4.34
3075 3669 6.439375 TGCTGTCTTTGTTATCTCTAGGGTTA 59.561 38.462 0.00 0.00 0.00 2.85
3076 3670 6.757478 GCTGTCTTTGTTATCTCTAGGGTTAC 59.243 42.308 0.00 0.00 0.00 2.50
3077 3671 7.363968 GCTGTCTTTGTTATCTCTAGGGTTACT 60.364 40.741 0.00 0.00 0.00 2.24
3078 3672 9.186837 CTGTCTTTGTTATCTCTAGGGTTACTA 57.813 37.037 0.00 0.00 0.00 1.82
3088 3682 2.935481 AGGGTTACTAGTTTCGAGCG 57.065 50.000 0.00 0.00 0.00 5.03
3089 3683 1.135170 AGGGTTACTAGTTTCGAGCGC 60.135 52.381 0.00 0.00 0.00 5.92
3090 3684 1.275505 GGTTACTAGTTTCGAGCGCC 58.724 55.000 2.29 0.00 0.00 6.53
3091 3685 1.275505 GTTACTAGTTTCGAGCGCCC 58.724 55.000 2.29 0.00 0.00 6.13
3092 3686 0.889994 TTACTAGTTTCGAGCGCCCA 59.110 50.000 2.29 0.00 0.00 5.36
3093 3687 0.454600 TACTAGTTTCGAGCGCCCAG 59.545 55.000 2.29 0.00 0.00 4.45
3094 3688 1.215647 CTAGTTTCGAGCGCCCAGT 59.784 57.895 2.29 0.00 0.00 4.00
3095 3689 1.078759 CTAGTTTCGAGCGCCCAGTG 61.079 60.000 2.29 0.00 0.00 3.66
3096 3690 1.812686 TAGTTTCGAGCGCCCAGTGT 61.813 55.000 2.29 0.00 0.00 3.55
3097 3691 2.357034 TTTCGAGCGCCCAGTGTC 60.357 61.111 2.29 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.751172 GCTTTTTGCAACGATCAGTTTTC 58.249 39.130 0.00 0.00 42.02 2.29
51 58 5.649782 ATGTTGTTATTGCAAAGAGGGAG 57.350 39.130 1.71 0.00 0.00 4.30
117 124 2.265367 TCCCTGAGTGGCATGTTTCTA 58.735 47.619 0.00 0.00 0.00 2.10
137 144 2.502492 CCTGCTCGATCCGTCCCAT 61.502 63.158 0.00 0.00 0.00 4.00
143 150 3.610669 CCCTCCCTGCTCGATCCG 61.611 72.222 0.00 0.00 0.00 4.18
172 179 1.217882 CTTCCCGTCAGTGTTGTCAC 58.782 55.000 0.00 0.00 44.15 3.67
173 180 0.828022 ACTTCCCGTCAGTGTTGTCA 59.172 50.000 0.00 0.00 0.00 3.58
182 189 1.901948 AGAGCACGACTTCCCGTCA 60.902 57.895 0.00 0.00 42.98 4.35
203 210 2.742372 ATTCCAGCGACGTGTGGC 60.742 61.111 12.17 0.00 33.43 5.01
211 219 2.180769 CGGTCGTCATTCCAGCGA 59.819 61.111 0.00 0.00 32.84 4.93
257 265 3.560068 TCTTTTTCTCTTTGTCGCCACTC 59.440 43.478 0.00 0.00 0.00 3.51
260 268 3.315191 CCTTCTTTTTCTCTTTGTCGCCA 59.685 43.478 0.00 0.00 0.00 5.69
265 273 8.367911 ACTTTTGTTCCTTCTTTTTCTCTTTGT 58.632 29.630 0.00 0.00 0.00 2.83
272 280 6.978659 CACCCTACTTTTGTTCCTTCTTTTTC 59.021 38.462 0.00 0.00 0.00 2.29
277 285 3.750922 GCCACCCTACTTTTGTTCCTTCT 60.751 47.826 0.00 0.00 0.00 2.85
280 288 1.544759 CGCCACCCTACTTTTGTTCCT 60.545 52.381 0.00 0.00 0.00 3.36
284 292 0.605589 GCTCGCCACCCTACTTTTGT 60.606 55.000 0.00 0.00 0.00 2.83
285 293 1.305930 GGCTCGCCACCCTACTTTTG 61.306 60.000 2.41 0.00 35.81 2.44
286 294 1.002502 GGCTCGCCACCCTACTTTT 60.003 57.895 2.41 0.00 35.81 2.27
296 304 4.033776 CCAAGGAAGGGCTCGCCA 62.034 66.667 10.51 0.00 37.98 5.69
307 316 0.617935 TCATCATTCACCGCCAAGGA 59.382 50.000 0.00 0.00 45.00 3.36
311 320 1.026182 GCAGTCATCATTCACCGCCA 61.026 55.000 0.00 0.00 0.00 5.69
313 322 1.026182 TGGCAGTCATCATTCACCGC 61.026 55.000 0.00 0.00 0.00 5.68
321 330 0.107993 GCTAGCTGTGGCAGTCATCA 60.108 55.000 7.70 0.00 41.70 3.07
324 333 2.665000 GGCTAGCTGTGGCAGTCA 59.335 61.111 15.72 0.00 41.70 3.41
362 371 0.247974 GATGCTTGCGAGTGTCATGC 60.248 55.000 2.14 0.00 35.81 4.06
363 372 1.326852 GAGATGCTTGCGAGTGTCATG 59.673 52.381 2.14 0.00 0.00 3.07
364 373 1.649664 GAGATGCTTGCGAGTGTCAT 58.350 50.000 2.14 0.00 0.00 3.06
365 374 0.390340 GGAGATGCTTGCGAGTGTCA 60.390 55.000 2.14 0.00 0.00 3.58
366 375 1.086634 GGGAGATGCTTGCGAGTGTC 61.087 60.000 2.14 1.38 0.00 3.67
369 378 0.392193 CAAGGGAGATGCTTGCGAGT 60.392 55.000 2.14 0.00 0.00 4.18
370 379 1.712977 GCAAGGGAGATGCTTGCGAG 61.713 60.000 0.00 0.00 42.86 5.03
371 380 1.746615 GCAAGGGAGATGCTTGCGA 60.747 57.895 0.00 0.00 42.86 5.10
372 381 2.796651 GCAAGGGAGATGCTTGCG 59.203 61.111 0.00 0.00 42.86 4.85
374 383 0.169672 CAACGCAAGGGAGATGCTTG 59.830 55.000 0.00 0.00 41.64 4.01
375 384 0.250901 ACAACGCAAGGGAGATGCTT 60.251 50.000 0.00 0.00 41.64 3.91
389 398 3.791993 TTTCGTCCCGAATAAACAACG 57.208 42.857 0.00 0.00 45.28 4.10
391 400 6.205076 TGAATCTTTTCGTCCCGAATAAACAA 59.795 34.615 0.00 0.00 45.28 2.83
394 403 6.167685 TCTGAATCTTTTCGTCCCGAATAAA 58.832 36.000 0.00 0.00 45.28 1.40
401 410 4.457834 TCTCTCTGAATCTTTTCGTCCC 57.542 45.455 0.00 0.00 34.39 4.46
415 424 6.718912 TCATCTACCTTATCCACATCTCTCTG 59.281 42.308 0.00 0.00 0.00 3.35
425 434 3.069586 CACGCCTTCATCTACCTTATCCA 59.930 47.826 0.00 0.00 0.00 3.41
438 447 0.825425 TTTGGAATGGCACGCCTTCA 60.825 50.000 9.92 0.00 36.94 3.02
439 448 0.316841 TTTTGGAATGGCACGCCTTC 59.683 50.000 9.92 10.06 36.94 3.46
449 458 4.439153 CCCATCATCACGTCTTTTGGAATG 60.439 45.833 0.00 0.00 0.00 2.67
450 459 3.696051 CCCATCATCACGTCTTTTGGAAT 59.304 43.478 0.00 0.00 0.00 3.01
465 474 0.577916 TCCCCTATGGACCCCATCAT 59.422 55.000 1.17 0.00 40.74 2.45
509 548 3.001228 CGTTGATAATCACCCACATGTCG 59.999 47.826 0.00 0.00 0.00 4.35
513 552 2.930950 CCCGTTGATAATCACCCACAT 58.069 47.619 0.00 0.00 0.00 3.21
514 553 1.680555 GCCCGTTGATAATCACCCACA 60.681 52.381 0.00 0.00 0.00 4.17
531 570 2.101415 GGAAAATGCTTACCATCAGCCC 59.899 50.000 0.00 0.00 36.33 5.19
533 572 4.454728 TTGGAAAATGCTTACCATCAGC 57.545 40.909 0.00 0.00 37.82 4.26
535 574 9.784531 TTTAATTTTGGAAAATGCTTACCATCA 57.215 25.926 0.00 0.00 38.53 3.07
595 636 2.198304 CTGGGGAAGGGTTTCTCGGG 62.198 65.000 0.00 0.00 34.43 5.14
596 637 1.299976 CTGGGGAAGGGTTTCTCGG 59.700 63.158 0.00 0.00 34.43 4.63
597 638 0.036294 GACTGGGGAAGGGTTTCTCG 60.036 60.000 0.00 0.00 34.43 4.04
613 654 3.182996 GGTTGGGTGGTGGGGACT 61.183 66.667 0.00 0.00 0.00 3.85
617 658 1.842381 GAGAGAGGTTGGGTGGTGGG 61.842 65.000 0.00 0.00 0.00 4.61
627 668 3.181412 ACAAGGGAGAAGAGAGAGAGGTT 60.181 47.826 0.00 0.00 0.00 3.50
636 677 4.283212 AGAAGAACAGACAAGGGAGAAGAG 59.717 45.833 0.00 0.00 0.00 2.85
639 680 3.005897 CGAGAAGAACAGACAAGGGAGAA 59.994 47.826 0.00 0.00 0.00 2.87
730 773 1.187087 GAGAACGGGAGAGATGTGGT 58.813 55.000 0.00 0.00 0.00 4.16
766 810 0.758685 AGAGAGCTCGGGGATGAAGG 60.759 60.000 8.37 0.00 34.09 3.46
787 831 0.829990 GGGAAAGCAGAGGGAGAGAG 59.170 60.000 0.00 0.00 0.00 3.20
792 836 2.231380 GGTGGGGAAAGCAGAGGGA 61.231 63.158 0.00 0.00 0.00 4.20
906 957 2.279120 GACGAGCAGGCGGATGAG 60.279 66.667 0.00 0.00 35.12 2.90
956 1083 7.766278 CCTTTGTTTATACAGTGATGACTAGCT 59.234 37.037 0.00 0.00 35.28 3.32
965 1092 5.830991 AGGTTTGCCTTTGTTTATACAGTGA 59.169 36.000 0.00 0.00 44.18 3.41
1030 1215 5.703130 GTGTCCTTGTTTCTTCTTCAGCTAT 59.297 40.000 0.00 0.00 0.00 2.97
1103 1288 6.273260 AGGGATAGATGTTGTATACTTGCCAT 59.727 38.462 4.17 1.24 0.00 4.40
1185 1385 1.327460 CCAGGTTCGTAATCATGTGCG 59.673 52.381 0.00 0.00 0.00 5.34
1189 1389 3.120792 CGTACCCAGGTTCGTAATCATG 58.879 50.000 7.60 0.00 34.90 3.07
1225 1425 1.471684 GGCACCAGCTGAATCAAGAAG 59.528 52.381 17.39 0.00 41.70 2.85
1290 1490 0.036010 ATGAAGGCACTGGTTCTCCG 60.036 55.000 0.00 0.00 40.86 4.63
1375 1578 2.751806 CCTCCAAATCCTTCTGCTTGAC 59.248 50.000 0.00 0.00 0.00 3.18
1929 2153 0.540597 GGAACCCAAAGCAAGCCTCT 60.541 55.000 0.00 0.00 0.00 3.69
1981 2206 5.221823 TGAGATGTTGGTAACCATCACTTGA 60.222 40.000 0.00 0.00 36.26 3.02
2105 2330 4.771590 AATCAGTACCAACACATGCAAG 57.228 40.909 0.00 0.00 0.00 4.01
2106 2331 6.179756 AGATAATCAGTACCAACACATGCAA 58.820 36.000 0.00 0.00 0.00 4.08
2107 2332 5.744171 AGATAATCAGTACCAACACATGCA 58.256 37.500 0.00 0.00 0.00 3.96
2108 2333 7.969536 ATAGATAATCAGTACCAACACATGC 57.030 36.000 0.00 0.00 0.00 4.06
2111 2336 9.733556 ACAAAATAGATAATCAGTACCAACACA 57.266 29.630 0.00 0.00 0.00 3.72
2132 2381 7.064847 ACCGATACACGCAAAATAGATACAAAA 59.935 33.333 0.00 0.00 41.07 2.44
2135 2384 5.593968 ACCGATACACGCAAAATAGATACA 58.406 37.500 0.00 0.00 41.07 2.29
2149 2398 0.103208 CTGAGGGCAGACCGATACAC 59.897 60.000 0.00 0.00 45.17 2.90
2150 2399 0.033503 TCTGAGGGCAGACCGATACA 60.034 55.000 0.00 0.00 45.88 2.29
2151 2400 0.671251 CTCTGAGGGCAGACCGATAC 59.329 60.000 0.00 0.00 45.88 2.24
2152 2401 0.551396 TCTCTGAGGGCAGACCGATA 59.449 55.000 4.59 0.00 45.88 2.92
2153 2402 0.754957 CTCTCTGAGGGCAGACCGAT 60.755 60.000 4.59 0.00 45.88 4.18
2154 2403 1.379176 CTCTCTGAGGGCAGACCGA 60.379 63.158 4.59 0.00 45.88 4.69
2155 2404 3.074999 GCTCTCTGAGGGCAGACCG 62.075 68.421 24.15 0.00 45.88 4.79
2156 2405 1.685421 AGCTCTCTGAGGGCAGACC 60.685 63.158 29.68 1.58 45.88 3.85
2159 2408 4.031061 TCAGCTCTCTGAGGGCAG 57.969 61.111 29.68 22.58 43.95 4.85
2168 2425 4.175516 CAAGAGTCTGACAATCAGCTCTC 58.824 47.826 22.00 19.06 46.77 3.20
2259 2524 8.390354 CGCAAAGTTTACTTGAGATATGATCAA 58.610 33.333 0.00 1.19 36.12 2.57
2282 2548 4.495019 CGGCAAACTAGCAAAATATACGCA 60.495 41.667 0.00 0.00 35.83 5.24
2284 2550 4.961551 CACGGCAAACTAGCAAAATATACG 59.038 41.667 0.00 0.00 35.83 3.06
2342 2608 4.156008 CCAAAAGTACCAGTTGTATCTGCC 59.844 45.833 0.00 0.00 34.47 4.85
2347 2613 4.352893 AGGACCCAAAAGTACCAGTTGTAT 59.647 41.667 0.00 0.00 0.00 2.29
2350 2616 2.884639 CAGGACCCAAAAGTACCAGTTG 59.115 50.000 0.00 0.00 0.00 3.16
2411 2683 1.000955 GTCTCCACACTGACCAATCGT 59.999 52.381 0.00 0.00 0.00 3.73
2439 2785 9.241317 CAAAATACAAGATATAGCAGGCAAAAG 57.759 33.333 0.00 0.00 0.00 2.27
2446 2795 9.955208 TTGCAATCAAAATACAAGATATAGCAG 57.045 29.630 0.00 0.00 31.04 4.24
2457 2806 9.995003 AACTAAAAGGATTGCAATCAAAATACA 57.005 25.926 34.08 15.49 37.15 2.29
2525 2909 4.757149 AGGTGATCTTTTTCACTTCGGAAG 59.243 41.667 15.96 15.96 44.39 3.46
2540 2924 5.815233 TGAAAAACAGAGAGAGGTGATCT 57.185 39.130 0.00 0.00 42.61 2.75
2541 2925 5.994668 ACTTGAAAAACAGAGAGAGGTGATC 59.005 40.000 0.00 0.00 0.00 2.92
2553 2937 3.928375 GCCATGCCATACTTGAAAAACAG 59.072 43.478 0.00 0.00 0.00 3.16
2555 2939 3.924144 TGCCATGCCATACTTGAAAAAC 58.076 40.909 0.00 0.00 0.00 2.43
2558 2942 2.806434 ACTGCCATGCCATACTTGAAA 58.194 42.857 0.00 0.00 0.00 2.69
2559 2943 2.512692 ACTGCCATGCCATACTTGAA 57.487 45.000 0.00 0.00 0.00 2.69
2560 2944 2.512692 AACTGCCATGCCATACTTGA 57.487 45.000 0.00 0.00 0.00 3.02
2566 2950 0.688487 AAGCAAAACTGCCATGCCAT 59.312 45.000 0.00 0.00 40.93 4.40
2601 2993 7.440523 AGAACAACATAAGCTAAGAAAGGTG 57.559 36.000 0.00 0.00 35.65 4.00
2628 3020 6.156602 TGGCTATTTGGGATCATTCAACAAAT 59.843 34.615 0.00 0.00 40.72 2.32
2657 3060 2.006772 CGACATGGTTTAGCTCGGC 58.993 57.895 0.00 0.00 0.00 5.54
2686 3089 4.600062 CCCTTACCTAACAGGATTTGCTT 58.400 43.478 0.00 0.00 37.67 3.91
2687 3090 3.624959 GCCCTTACCTAACAGGATTTGCT 60.625 47.826 0.00 0.00 37.67 3.91
2702 3105 8.770438 TTTTGAATCAACAAATATGCCCTTAC 57.230 30.769 0.00 0.00 39.09 2.34
2802 3205 7.703621 CCTCGCACAAATGAATCATAAGAAAAT 59.296 33.333 0.00 0.00 0.00 1.82
2804 3207 6.150976 ACCTCGCACAAATGAATCATAAGAAA 59.849 34.615 0.00 0.00 0.00 2.52
2897 3300 8.806429 TGATTTGTCCATCAATACTACAACAT 57.194 30.769 0.00 0.00 35.84 2.71
2899 3302 8.730680 ACTTGATTTGTCCATCAATACTACAAC 58.269 33.333 0.00 0.00 41.36 3.32
2901 3304 8.100164 TCACTTGATTTGTCCATCAATACTACA 58.900 33.333 0.00 0.00 41.36 2.74
2929 3521 5.070446 TGCCAAACCATAGTAGTATCCTGAG 59.930 44.000 0.00 0.00 0.00 3.35
2935 3527 8.660435 ACAATATCTGCCAAACCATAGTAGTAT 58.340 33.333 0.00 0.00 0.00 2.12
2938 3530 7.307396 CGAACAATATCTGCCAAACCATAGTAG 60.307 40.741 0.00 0.00 0.00 2.57
2953 3545 5.356190 TCTCAAGTACGGTCGAACAATATCT 59.644 40.000 0.00 0.00 0.00 1.98
2969 3561 2.095617 TCGATCGCGTGTTTCTCAAGTA 60.096 45.455 11.09 0.00 38.98 2.24
2983 3577 1.571919 AGTTAATGGCACTCGATCGC 58.428 50.000 11.09 0.00 0.00 4.58
2988 3582 3.996825 GGCAAGTTAATGGCACTCG 57.003 52.632 0.00 0.00 44.66 4.18
3014 3608 3.921677 TCTAGCTAGGTCCAAAAACACG 58.078 45.455 20.58 0.00 0.00 4.49
3018 3612 6.122277 CCAATGATCTAGCTAGGTCCAAAAA 58.878 40.000 27.43 11.83 32.42 1.94
3019 3613 5.684704 CCAATGATCTAGCTAGGTCCAAAA 58.315 41.667 27.43 12.18 32.42 2.44
3025 3619 4.746466 AGTAGCCAATGATCTAGCTAGGT 58.254 43.478 20.58 14.33 38.44 3.08
3027 3621 6.756074 GCAATAGTAGCCAATGATCTAGCTAG 59.244 42.308 15.01 15.01 38.44 3.42
3031 3625 6.462500 ACAGCAATAGTAGCCAATGATCTAG 58.538 40.000 0.00 0.00 0.00 2.43
3033 3627 5.071519 AGACAGCAATAGTAGCCAATGATCT 59.928 40.000 0.00 0.00 0.00 2.75
3035 3629 5.301835 AGACAGCAATAGTAGCCAATGAT 57.698 39.130 0.00 0.00 0.00 2.45
3036 3630 4.760530 AGACAGCAATAGTAGCCAATGA 57.239 40.909 0.00 0.00 0.00 2.57
3037 3631 5.124457 ACAAAGACAGCAATAGTAGCCAATG 59.876 40.000 0.00 0.00 0.00 2.82
3038 3632 5.256474 ACAAAGACAGCAATAGTAGCCAAT 58.744 37.500 0.00 0.00 0.00 3.16
3039 3633 4.651778 ACAAAGACAGCAATAGTAGCCAA 58.348 39.130 0.00 0.00 0.00 4.52
3040 3634 4.286297 ACAAAGACAGCAATAGTAGCCA 57.714 40.909 0.00 0.00 0.00 4.75
3041 3635 6.763610 AGATAACAAAGACAGCAATAGTAGCC 59.236 38.462 0.00 0.00 0.00 3.93
3042 3636 7.708752 AGAGATAACAAAGACAGCAATAGTAGC 59.291 37.037 0.00 0.00 0.00 3.58
3045 3639 8.200792 CCTAGAGATAACAAAGACAGCAATAGT 58.799 37.037 0.00 0.00 0.00 2.12
3046 3640 7.655328 CCCTAGAGATAACAAAGACAGCAATAG 59.345 40.741 0.00 0.00 0.00 1.73
3048 3642 6.069963 ACCCTAGAGATAACAAAGACAGCAAT 60.070 38.462 0.00 0.00 0.00 3.56
3049 3643 5.248477 ACCCTAGAGATAACAAAGACAGCAA 59.752 40.000 0.00 0.00 0.00 3.91
3050 3644 4.777896 ACCCTAGAGATAACAAAGACAGCA 59.222 41.667 0.00 0.00 0.00 4.41
3051 3645 5.346181 ACCCTAGAGATAACAAAGACAGC 57.654 43.478 0.00 0.00 0.00 4.40
3052 3646 8.068892 AGTAACCCTAGAGATAACAAAGACAG 57.931 38.462 0.00 0.00 0.00 3.51
3053 3647 9.186837 CTAGTAACCCTAGAGATAACAAAGACA 57.813 37.037 0.00 0.00 45.21 3.41
3054 3648 9.187996 ACTAGTAACCCTAGAGATAACAAAGAC 57.812 37.037 0.00 0.00 45.21 3.01
3055 3649 9.765295 AACTAGTAACCCTAGAGATAACAAAGA 57.235 33.333 0.00 0.00 45.21 2.52
3058 3652 8.680903 CGAAACTAGTAACCCTAGAGATAACAA 58.319 37.037 0.00 0.00 45.21 2.83
3059 3653 8.049117 TCGAAACTAGTAACCCTAGAGATAACA 58.951 37.037 0.00 0.00 45.21 2.41
3060 3654 8.443953 TCGAAACTAGTAACCCTAGAGATAAC 57.556 38.462 0.00 0.00 45.21 1.89
3064 3658 4.880696 GCTCGAAACTAGTAACCCTAGAGA 59.119 45.833 0.00 0.00 45.21 3.10
3065 3659 4.260702 CGCTCGAAACTAGTAACCCTAGAG 60.261 50.000 0.00 0.39 45.21 2.43
3066 3660 3.624861 CGCTCGAAACTAGTAACCCTAGA 59.375 47.826 0.00 0.00 45.21 2.43
3069 3663 1.135170 GCGCTCGAAACTAGTAACCCT 60.135 52.381 0.00 0.00 0.00 4.34
3072 3666 1.275505 GGGCGCTCGAAACTAGTAAC 58.724 55.000 7.64 0.00 0.00 2.50
3073 3667 0.889994 TGGGCGCTCGAAACTAGTAA 59.110 50.000 7.64 0.00 0.00 2.24
3075 3669 1.215647 CTGGGCGCTCGAAACTAGT 59.784 57.895 7.64 0.00 0.00 2.57
3076 3670 1.078759 CACTGGGCGCTCGAAACTAG 61.079 60.000 7.64 0.00 0.00 2.57
3077 3671 1.080093 CACTGGGCGCTCGAAACTA 60.080 57.895 7.64 0.00 0.00 2.24
3078 3672 2.357517 CACTGGGCGCTCGAAACT 60.358 61.111 7.64 0.00 0.00 2.66
3079 3673 2.665185 ACACTGGGCGCTCGAAAC 60.665 61.111 7.64 0.00 0.00 2.78
3080 3674 2.357034 GACACTGGGCGCTCGAAA 60.357 61.111 7.64 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.