Multiple sequence alignment - TraesCS5D01G043200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G043200 chr5D 100.000 5920 0 0 1832 7751 42905723 42911642 0.000000e+00 10933.0
1 TraesCS5D01G043200 chr5D 100.000 1357 0 0 1 1357 42903892 42905248 0.000000e+00 2507.0
2 TraesCS5D01G043200 chr5D 89.231 195 21 0 2 196 233750529 233750335 2.160000e-60 244.0
3 TraesCS5D01G043200 chr5D 88.776 196 21 1 2 196 208128785 208128980 1.010000e-58 239.0
4 TraesCS5D01G043200 chr5D 90.909 165 15 0 32 196 557190258 557190422 1.010000e-53 222.0
5 TraesCS5D01G043200 chr5B 92.195 4382 232 55 1834 6141 38182485 38178140 0.000000e+00 6096.0
6 TraesCS5D01G043200 chr5B 92.478 678 37 11 6139 6806 38178107 38177434 0.000000e+00 957.0
7 TraesCS5D01G043200 chr5B 88.315 368 18 8 992 1357 38183012 38182668 1.200000e-112 418.0
8 TraesCS5D01G043200 chr5B 91.964 112 8 1 893 1004 38184498 38184388 1.040000e-33 156.0
9 TraesCS5D01G043200 chr5A 94.726 1934 76 12 2982 4897 32665795 32667720 0.000000e+00 2983.0
10 TraesCS5D01G043200 chr5A 91.026 1326 88 16 5449 6751 32668354 32669671 0.000000e+00 1760.0
11 TraesCS5D01G043200 chr5A 89.083 1200 67 25 1836 2984 32664372 32665558 0.000000e+00 1432.0
12 TraesCS5D01G043200 chr5A 88.604 781 51 13 6772 7550 32669998 32670742 0.000000e+00 915.0
13 TraesCS5D01G043200 chr5A 84.336 715 91 17 193 893 514777784 514777077 0.000000e+00 680.0
14 TraesCS5D01G043200 chr5A 84.672 685 88 12 194 871 18547737 18548411 0.000000e+00 667.0
15 TraesCS5D01G043200 chr5A 89.271 494 43 6 4927 5414 32667861 32668350 1.850000e-170 610.0
16 TraesCS5D01G043200 chr5A 89.702 369 14 9 1000 1357 32663952 32664307 4.270000e-122 449.0
17 TraesCS5D01G043200 chr5A 83.824 204 23 7 7549 7750 32670904 32671099 1.330000e-42 185.0
18 TraesCS5D01G043200 chr4D 87.989 716 69 11 193 902 11134490 11133786 0.000000e+00 830.0
19 TraesCS5D01G043200 chr1D 87.658 713 56 17 193 895 437470268 437470958 0.000000e+00 800.0
20 TraesCS5D01G043200 chr1D 93.333 195 13 0 2 196 288910271 288910077 9.840000e-74 289.0
21 TraesCS5D01G043200 chr7D 86.288 722 75 14 193 907 145759105 145759809 0.000000e+00 763.0
22 TraesCS5D01G043200 chr7D 85.513 711 80 16 193 893 619996687 619997384 0.000000e+00 721.0
23 TraesCS5D01G043200 chr7D 84.653 202 30 1 2 203 109168152 109167952 4.740000e-47 200.0
24 TraesCS5D01G043200 chr7D 88.732 71 8 0 7679 7749 94646767 94646697 3.850000e-13 87.9
25 TraesCS5D01G043200 chr2D 86.275 714 75 15 193 893 374111032 374111735 0.000000e+00 754.0
26 TraesCS5D01G043200 chr2D 89.706 204 11 7 2 196 556708554 556708352 1.290000e-62 252.0
27 TraesCS5D01G043200 chr3A 85.997 707 83 11 193 893 31549889 31549193 0.000000e+00 743.0
28 TraesCS5D01G043200 chr3D 85.675 719 75 21 193 895 144255669 144256375 0.000000e+00 732.0
29 TraesCS5D01G043200 chr3D 86.000 200 25 2 11 210 95140010 95139814 2.190000e-50 211.0
30 TraesCS5D01G043200 chr3D 88.889 72 8 0 7679 7750 29244006 29244077 1.070000e-13 89.8
31 TraesCS5D01G043200 chr3D 90.000 60 6 0 7672 7731 416943334 416943393 2.320000e-10 78.7
32 TraesCS5D01G043200 chr3D 96.970 33 1 0 7672 7704 108207746 108207778 1.000000e-03 56.5
33 TraesCS5D01G043200 chr7A 90.816 196 18 0 1 196 574081505 574081700 5.960000e-66 263.0
34 TraesCS5D01G043200 chr2A 87.317 205 17 2 1 196 673146624 673146828 7.830000e-55 226.0
35 TraesCS5D01G043200 chr2A 90.141 71 6 1 7679 7749 738852275 738852206 2.980000e-14 91.6
36 TraesCS5D01G043200 chr2A 100.000 30 0 0 866 895 752819835 752819864 1.000000e-03 56.5
37 TraesCS5D01G043200 chr2B 84.236 203 30 1 1 203 212118267 212118467 6.140000e-46 196.0
38 TraesCS5D01G043200 chr2B 81.013 79 9 5 7674 7750 772349617 772349543 3.020000e-04 58.4
39 TraesCS5D01G043200 chr3B 81.043 211 31 2 2 203 621532372 621532582 8.050000e-35 159.0
40 TraesCS5D01G043200 chr3B 84.810 79 12 0 7672 7750 543153761 543153839 6.450000e-11 80.5
41 TraesCS5D01G043200 chr6D 88.312 77 7 2 7674 7750 44932770 44932696 2.980000e-14 91.6
42 TraesCS5D01G043200 chr1A 86.486 74 9 1 7678 7751 557514460 557514388 6.450000e-11 80.5
43 TraesCS5D01G043200 chrUn 90.698 43 4 0 7673 7715 347178676 347178718 3.020000e-04 58.4
44 TraesCS5D01G043200 chrUn 96.970 33 1 0 7673 7705 216139887 216139855 1.000000e-03 56.5
45 TraesCS5D01G043200 chr6B 90.698 43 4 0 7673 7715 689062537 689062579 3.020000e-04 58.4
46 TraesCS5D01G043200 chr6B 100.000 29 0 0 7674 7702 256977172 256977200 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G043200 chr5D 42903892 42911642 7750 False 6720.000000 10933 100.000000 1 7751 2 chr5D.!!$F3 7750
1 TraesCS5D01G043200 chr5B 38177434 38184498 7064 True 1906.750000 6096 91.238000 893 6806 4 chr5B.!!$R1 5913
2 TraesCS5D01G043200 chr5A 32663952 32671099 7147 False 1190.571429 2983 89.462286 1000 7750 7 chr5A.!!$F2 6750
3 TraesCS5D01G043200 chr5A 514777077 514777784 707 True 680.000000 680 84.336000 193 893 1 chr5A.!!$R1 700
4 TraesCS5D01G043200 chr5A 18547737 18548411 674 False 667.000000 667 84.672000 194 871 1 chr5A.!!$F1 677
5 TraesCS5D01G043200 chr4D 11133786 11134490 704 True 830.000000 830 87.989000 193 902 1 chr4D.!!$R1 709
6 TraesCS5D01G043200 chr1D 437470268 437470958 690 False 800.000000 800 87.658000 193 895 1 chr1D.!!$F1 702
7 TraesCS5D01G043200 chr7D 145759105 145759809 704 False 763.000000 763 86.288000 193 907 1 chr7D.!!$F1 714
8 TraesCS5D01G043200 chr7D 619996687 619997384 697 False 721.000000 721 85.513000 193 893 1 chr7D.!!$F2 700
9 TraesCS5D01G043200 chr2D 374111032 374111735 703 False 754.000000 754 86.275000 193 893 1 chr2D.!!$F1 700
10 TraesCS5D01G043200 chr3A 31549193 31549889 696 True 743.000000 743 85.997000 193 893 1 chr3A.!!$R1 700
11 TraesCS5D01G043200 chr3D 144255669 144256375 706 False 732.000000 732 85.675000 193 895 1 chr3D.!!$F3 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.389296 TGTGGTCCATGTACTTCGCG 60.389 55.000 0.00 0.0 0.00 5.87 F
1923 3367 0.682852 TGGGTCGTTTCCGTCAATCT 59.317 50.000 0.00 0.0 35.01 2.40 F
2713 4211 0.329261 TGGGAGATGAGGCACTTTGG 59.671 55.000 0.00 0.0 41.55 3.28 F
3251 4991 1.133513 TGGATGACCAAACTGCCAACT 60.134 47.619 0.00 0.0 43.91 3.16 F
3481 5222 1.209504 TGCCATGGACAGGTACTTAGC 59.790 52.381 18.40 0.0 34.60 3.09 F
3838 5579 1.459592 CAGAAACCGTTTACTGCCTCG 59.540 52.381 0.00 0.0 0.00 4.63 F
5188 7062 1.082366 GCGTGCACCCTTGTTTACG 60.082 57.895 12.15 0.0 33.05 3.18 F
5908 7800 1.871039 AGCAATGCTGTCGTAAAACGT 59.129 42.857 7.07 0.0 39.24 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2011 3455 0.038526 ACGGAACACAGCTTCCTACG 60.039 55.000 0.83 0.0 38.08 3.51 R
3838 5579 0.404426 AGGGAACAAACTGTAGGCCC 59.596 55.000 0.00 0.0 36.91 5.80 R
4449 6206 1.213926 AGAGAGGGCACAAATGGATCC 59.786 52.381 4.20 4.2 0.00 3.36 R
4959 6830 1.541147 TCAAGCATCAGGAAAAAGGCG 59.459 47.619 0.00 0.0 0.00 5.52 R
5090 6964 2.354510 GCACATTTAGCGCCATACTTCA 59.645 45.455 2.29 0.0 0.00 3.02 R
5774 7656 1.210478 TGCAGGAATGCCTACCTTCTC 59.790 52.381 0.00 0.0 44.80 2.87 R
6013 7905 0.320050 TGTAGACACGCAAGCCATCA 59.680 50.000 0.00 0.0 45.62 3.07 R
7081 9328 0.320421 TTCGAAAGAGGCGGAGTTGG 60.320 55.000 0.00 0.0 43.69 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.598257 GACATGTGAGTGTCGGGG 57.402 61.111 1.15 0.00 39.12 5.73
19 20 1.079127 GACATGTGAGTGTCGGGGG 60.079 63.158 1.15 0.00 39.12 5.40
20 21 2.436646 CATGTGAGTGTCGGGGGC 60.437 66.667 0.00 0.00 0.00 5.80
21 22 4.082523 ATGTGAGTGTCGGGGGCG 62.083 66.667 0.00 0.00 0.00 6.13
103 104 3.838271 GCATCCGCTCGTCCCTGA 61.838 66.667 0.00 0.00 34.30 3.86
104 105 2.105128 CATCCGCTCGTCCCTGAC 59.895 66.667 0.00 0.00 0.00 3.51
113 114 2.680352 GTCCCTGACGGAGGAGCA 60.680 66.667 4.35 0.00 46.33 4.26
114 115 2.363018 TCCCTGACGGAGGAGCAG 60.363 66.667 4.35 0.00 46.33 4.24
115 116 4.154347 CCCTGACGGAGGAGCAGC 62.154 72.222 4.35 0.00 46.33 5.25
116 117 4.504916 CCTGACGGAGGAGCAGCG 62.505 72.222 0.00 0.00 46.33 5.18
117 118 4.504916 CTGACGGAGGAGCAGCGG 62.505 72.222 0.00 0.00 0.00 5.52
119 120 3.760035 GACGGAGGAGCAGCGGAA 61.760 66.667 0.00 0.00 0.00 4.30
120 121 3.991536 GACGGAGGAGCAGCGGAAC 62.992 68.421 0.00 0.00 0.00 3.62
121 122 4.069232 CGGAGGAGCAGCGGAACA 62.069 66.667 0.00 0.00 0.00 3.18
122 123 2.347490 GGAGGAGCAGCGGAACAA 59.653 61.111 0.00 0.00 0.00 2.83
123 124 1.743252 GGAGGAGCAGCGGAACAAG 60.743 63.158 0.00 0.00 0.00 3.16
124 125 2.359230 AGGAGCAGCGGAACAAGC 60.359 61.111 0.00 0.00 0.00 4.01
130 131 4.626081 AGCGGAACAAGCTGCGGT 62.626 61.111 0.00 0.00 44.22 5.68
131 132 2.740826 GCGGAACAAGCTGCGGTA 60.741 61.111 0.00 0.00 0.00 4.02
132 133 3.023591 GCGGAACAAGCTGCGGTAC 62.024 63.158 0.00 0.00 0.00 3.34
153 154 3.490759 GCCGACAGCCACACGATG 61.491 66.667 0.00 0.00 34.35 3.84
154 155 2.048222 CCGACAGCCACACGATGT 60.048 61.111 0.00 0.00 0.00 3.06
163 164 3.231734 CACACGATGTGGTCCATGT 57.768 52.632 0.00 0.00 44.27 3.21
164 165 2.378445 CACACGATGTGGTCCATGTA 57.622 50.000 0.00 0.00 44.27 2.29
165 166 1.999735 CACACGATGTGGTCCATGTAC 59.000 52.381 0.00 0.00 44.27 2.90
166 167 1.899814 ACACGATGTGGTCCATGTACT 59.100 47.619 0.00 0.00 37.94 2.73
167 168 2.301870 ACACGATGTGGTCCATGTACTT 59.698 45.455 0.00 0.00 37.94 2.24
168 169 2.930040 CACGATGTGGTCCATGTACTTC 59.070 50.000 0.00 0.00 32.56 3.01
169 170 2.193447 CGATGTGGTCCATGTACTTCG 58.807 52.381 0.00 0.00 36.27 3.79
170 171 1.933853 GATGTGGTCCATGTACTTCGC 59.066 52.381 0.00 0.00 32.56 4.70
171 172 0.389296 TGTGGTCCATGTACTTCGCG 60.389 55.000 0.00 0.00 0.00 5.87
172 173 1.447140 TGGTCCATGTACTTCGCGC 60.447 57.895 0.00 0.00 0.00 6.86
173 174 2.514013 GGTCCATGTACTTCGCGCG 61.514 63.158 26.76 26.76 0.00 6.86
174 175 2.883730 TCCATGTACTTCGCGCGC 60.884 61.111 27.95 23.91 0.00 6.86
175 176 3.925238 CCATGTACTTCGCGCGCC 61.925 66.667 27.95 11.01 0.00 6.53
176 177 4.265630 CATGTACTTCGCGCGCCG 62.266 66.667 27.95 20.60 38.61 6.46
329 333 4.180946 CGACGAGTCCGCCCTCAG 62.181 72.222 0.00 0.00 39.95 3.35
676 703 4.069304 AGTTTTAGGCGTAGTTTGCATGA 58.931 39.130 0.00 0.00 0.00 3.07
719 747 5.761818 AATTTCAATGAAATTTCGCCGAC 57.238 34.783 23.70 0.00 46.07 4.79
735 763 0.787787 CGACTTCGTGCCAAAATCGA 59.212 50.000 0.00 0.00 34.11 3.59
767 796 6.203915 TGCAATAAATTGTACGGAATATCGCT 59.796 34.615 4.71 0.00 39.88 4.93
770 799 5.652744 AAATTGTACGGAATATCGCTGAC 57.347 39.130 0.00 0.00 0.00 3.51
957 992 4.775664 GCAAAGCCAAAATTGATGTCAAC 58.224 39.130 0.00 0.00 38.86 3.18
972 1007 1.480545 GTCAACCCAAACATATGCCCC 59.519 52.381 1.58 0.00 0.00 5.80
975 1010 2.304180 CAACCCAAACATATGCCCCAAA 59.696 45.455 1.58 0.00 0.00 3.28
976 1011 2.844369 ACCCAAACATATGCCCCAAAT 58.156 42.857 1.58 0.00 0.00 2.32
977 1012 2.771372 ACCCAAACATATGCCCCAAATC 59.229 45.455 1.58 0.00 0.00 2.17
978 1013 2.104622 CCCAAACATATGCCCCAAATCC 59.895 50.000 1.58 0.00 0.00 3.01
981 1016 4.080413 CCAAACATATGCCCCAAATCCTTT 60.080 41.667 1.58 0.00 0.00 3.11
982 1017 5.118286 CAAACATATGCCCCAAATCCTTTC 58.882 41.667 1.58 0.00 0.00 2.62
985 1020 1.937191 ATGCCCCAAATCCTTTCGTT 58.063 45.000 0.00 0.00 0.00 3.85
986 1021 2.588464 TGCCCCAAATCCTTTCGTTA 57.412 45.000 0.00 0.00 0.00 3.18
988 1023 1.749063 GCCCCAAATCCTTTCGTTAGG 59.251 52.381 0.00 0.00 36.59 2.69
989 1024 1.749063 CCCCAAATCCTTTCGTTAGGC 59.251 52.381 1.37 0.00 35.15 3.93
990 1025 1.400494 CCCAAATCCTTTCGTTAGGCG 59.600 52.381 1.37 0.00 43.01 5.52
1017 2439 4.980573 ACCATCACTTTACAGGTGCTTTA 58.019 39.130 0.00 0.00 34.97 1.85
1022 2444 6.164417 TCACTTTACAGGTGCTTTAGTGTA 57.836 37.500 0.00 0.00 34.62 2.90
1023 2445 6.584488 TCACTTTACAGGTGCTTTAGTGTAA 58.416 36.000 0.00 0.00 34.38 2.41
1024 2446 7.049133 TCACTTTACAGGTGCTTTAGTGTAAA 58.951 34.615 0.00 6.40 41.04 2.01
1075 2499 1.004918 CACCTCGTTCCCTTTCGCT 60.005 57.895 0.00 0.00 0.00 4.93
1076 2500 1.014564 CACCTCGTTCCCTTTCGCTC 61.015 60.000 0.00 0.00 0.00 5.03
1132 2556 4.525949 GGTCCCGCTCCGGCTAAC 62.526 72.222 0.00 0.00 46.86 2.34
1245 2678 2.839098 CTGGTGTTCCTGGGCACT 59.161 61.111 17.24 0.00 36.03 4.40
1886 3319 1.084370 CCTGTGGTTTCTCGCCGATC 61.084 60.000 0.00 0.00 0.00 3.69
1915 3359 2.033194 CGAAGGCTGGGTCGTTTCC 61.033 63.158 0.00 0.00 32.61 3.13
1918 3362 2.726822 AAGGCTGGGTCGTTTCCGTC 62.727 60.000 0.00 0.00 35.01 4.79
1923 3367 0.682852 TGGGTCGTTTCCGTCAATCT 59.317 50.000 0.00 0.00 35.01 2.40
1990 3434 0.904865 TGTCGCCTGGATCTGGAACT 60.905 55.000 0.00 0.00 0.00 3.01
2011 3455 1.718757 CTGCTAGTTTGGCGCCATCC 61.719 60.000 33.25 23.30 0.00 3.51
2038 3489 1.160329 GCTGTGTTCCGTGCTTCAGT 61.160 55.000 0.00 0.00 0.00 3.41
2039 3490 0.583438 CTGTGTTCCGTGCTTCAGTG 59.417 55.000 0.00 0.00 0.00 3.66
2067 3518 1.436600 CTCTGCTCTGCGTGATGTTT 58.563 50.000 0.00 0.00 0.00 2.83
2068 3519 1.128136 CTCTGCTCTGCGTGATGTTTG 59.872 52.381 0.00 0.00 0.00 2.93
2070 3521 1.265095 CTGCTCTGCGTGATGTTTGTT 59.735 47.619 0.00 0.00 0.00 2.83
2102 3560 3.728845 GGTGCATTCTCGTGGTATGTAT 58.271 45.455 0.00 0.00 0.00 2.29
2105 3563 4.024893 GTGCATTCTCGTGGTATGTATTGG 60.025 45.833 0.00 0.00 0.00 3.16
2151 3609 9.708222 CATTTTAGCAGTAACTGTTATCATGTC 57.292 33.333 3.23 1.72 33.43 3.06
2268 3730 3.634448 TGTTGTGGTCCAATAACACTTGG 59.366 43.478 15.49 0.00 45.91 3.61
2269 3731 2.235016 TGTGGTCCAATAACACTTGGC 58.765 47.619 0.00 0.00 44.48 4.52
2313 3775 7.681939 TGTTAGGATTTATGAACAAGTGGAC 57.318 36.000 0.00 0.00 0.00 4.02
2315 3777 7.606456 TGTTAGGATTTATGAACAAGTGGACTC 59.394 37.037 0.00 0.00 0.00 3.36
2316 3778 5.178797 AGGATTTATGAACAAGTGGACTCG 58.821 41.667 0.00 0.00 0.00 4.18
2325 3789 1.798813 CAAGTGGACTCGCAGGTTTAC 59.201 52.381 0.00 0.00 0.00 2.01
2394 3862 8.648968 GTTTCATTCAAAGCTAGTAGTGAGTAC 58.351 37.037 0.00 0.00 0.00 2.73
2415 3883 4.082125 ACAGCCTTTTCTTTCATACAGGG 58.918 43.478 0.00 0.00 0.00 4.45
2417 3885 4.766891 CAGCCTTTTCTTTCATACAGGGAA 59.233 41.667 0.00 0.00 0.00 3.97
2418 3886 5.420104 CAGCCTTTTCTTTCATACAGGGAAT 59.580 40.000 0.00 0.00 0.00 3.01
2420 3888 6.603599 AGCCTTTTCTTTCATACAGGGAATAC 59.396 38.462 0.00 0.00 0.00 1.89
2421 3889 6.377146 GCCTTTTCTTTCATACAGGGAATACA 59.623 38.462 0.00 0.00 0.00 2.29
2422 3890 7.068716 GCCTTTTCTTTCATACAGGGAATACAT 59.931 37.037 0.00 0.00 0.00 2.29
2629 4119 7.831691 TTGGTTTGGTGATATCTTGAAGAAA 57.168 32.000 0.00 0.00 0.00 2.52
2675 4165 3.878778 ACCTATCTCATGCAACAACCTC 58.121 45.455 0.00 0.00 0.00 3.85
2691 4181 9.093970 GCAACAACCTCTAGTTTAAAATGTTTT 57.906 29.630 0.00 0.00 36.18 2.43
2713 4211 0.329261 TGGGAGATGAGGCACTTTGG 59.671 55.000 0.00 0.00 41.55 3.28
2733 4231 8.440771 ACTTTGGTAGGATTATAAGCTAGCATT 58.559 33.333 18.83 10.75 0.00 3.56
2734 4232 8.621532 TTTGGTAGGATTATAAGCTAGCATTG 57.378 34.615 18.83 0.00 0.00 2.82
2735 4233 6.173339 TGGTAGGATTATAAGCTAGCATTGC 58.827 40.000 18.83 0.00 0.00 3.56
2743 4241 3.777465 AAGCTAGCATTGCACAATCAG 57.223 42.857 18.83 0.00 0.00 2.90
2755 4253 2.353406 GCACAATCAGGCTCAATTGCTT 60.353 45.455 15.59 0.00 36.54 3.91
2761 4259 8.019669 CACAATCAGGCTCAATTGCTTATATAC 58.980 37.037 15.59 0.00 36.54 1.47
2787 4285 7.439490 GCAATTTGATGTTCTTGTTCAATACG 58.561 34.615 0.00 0.00 0.00 3.06
2884 4383 4.608882 GCAAAGTCGATTCAACTTCTTTCG 59.391 41.667 0.00 0.00 35.96 3.46
2887 4386 5.986004 AGTCGATTCAACTTCTTTCGTTT 57.014 34.783 0.00 0.00 0.00 3.60
3195 4935 8.988934 GTGTTGATTCTGTGAGTTCTTATTGTA 58.011 33.333 0.00 0.00 0.00 2.41
3251 4991 1.133513 TGGATGACCAAACTGCCAACT 60.134 47.619 0.00 0.00 43.91 3.16
3455 5196 6.150332 TGATCCAACCCCTATTTATCTCTCA 58.850 40.000 0.00 0.00 0.00 3.27
3481 5222 1.209504 TGCCATGGACAGGTACTTAGC 59.790 52.381 18.40 0.00 34.60 3.09
3510 5251 7.715657 TGCTGACATTTTAGACTTTCATGTTT 58.284 30.769 0.00 0.00 0.00 2.83
3543 5284 6.313519 AAGAGAGCCTTATCAATGGTACAA 57.686 37.500 0.00 0.00 35.68 2.41
3569 5310 6.128526 GCCATGTACTCTTTTAGTTCTGACAC 60.129 42.308 0.00 0.00 39.80 3.67
3585 5326 7.541091 AGTTCTGACACGCCATAATATATTACG 59.459 37.037 7.34 9.32 0.00 3.18
3586 5327 5.803461 TCTGACACGCCATAATATATTACGC 59.197 40.000 7.34 10.80 0.00 4.42
3703 5444 7.744087 TTGTACTATCAAACTCACATGCTTT 57.256 32.000 0.00 0.00 0.00 3.51
3754 5495 7.038154 TCCATACTTGGTCAAAAAGAAACTG 57.962 36.000 0.00 0.00 44.06 3.16
3763 5504 5.043903 GTCAAAAAGAAACTGAAGGAAGGC 58.956 41.667 0.00 0.00 0.00 4.35
3838 5579 1.459592 CAGAAACCGTTTACTGCCTCG 59.540 52.381 0.00 0.00 0.00 4.63
3885 5626 6.316390 CCGGTAAGAAGTGCATTTTTCTATCT 59.684 38.462 10.32 0.00 33.49 1.98
4050 5791 5.706447 TCCTAGCACAGAAGATGGTATACT 58.294 41.667 2.25 0.00 30.13 2.12
4226 5973 3.243267 CCACTACAACCAACCTTTTTCGG 60.243 47.826 0.00 0.00 0.00 4.30
4245 5992 5.677319 TCGGGTGATCAGTAAATTCTCTT 57.323 39.130 0.00 0.00 0.00 2.85
4312 6069 9.236006 GCAATCTTGATTTATGGACCTGTATAT 57.764 33.333 0.00 0.00 0.00 0.86
4330 6087 7.386299 CCTGTATATTTAAGCATGGAGTCTGTC 59.614 40.741 0.00 0.00 0.00 3.51
4391 6148 6.246420 TGTGAGCTCTTTCTTTGCTATTTC 57.754 37.500 16.19 0.00 37.16 2.17
4395 6152 4.393371 AGCTCTTTCTTTGCTATTTCGTCC 59.607 41.667 0.00 0.00 35.05 4.79
4396 6153 4.393371 GCTCTTTCTTTGCTATTTCGTCCT 59.607 41.667 0.00 0.00 0.00 3.85
4397 6154 5.106515 GCTCTTTCTTTGCTATTTCGTCCTT 60.107 40.000 0.00 0.00 0.00 3.36
4449 6206 5.885230 TTGATGAAAGCTGTAATCTGGTG 57.115 39.130 2.73 0.00 0.00 4.17
4598 6355 6.200114 ACTGCCTATACAGGGTTAGTTTCTA 58.800 40.000 0.00 0.00 42.88 2.10
4614 6371 9.575783 GTTAGTTTCTAGAGTTCCTCAGTTATG 57.424 37.037 0.00 0.00 32.06 1.90
4754 6511 4.367450 TGGCTTTGCTTGTTACACATTTC 58.633 39.130 0.00 0.00 0.00 2.17
4755 6512 3.740832 GGCTTTGCTTGTTACACATTTCC 59.259 43.478 0.00 0.00 0.00 3.13
4906 6686 5.083122 TGCCCCAAAAACAGAATATTGAGA 58.917 37.500 0.00 0.00 0.00 3.27
4959 6830 4.152938 GGATCAAACACCGTAAACTACCAC 59.847 45.833 0.00 0.00 0.00 4.16
5018 6889 4.676723 CGGGAAATCTCTGTTCTCTGACTC 60.677 50.000 0.00 0.00 0.00 3.36
5073 6947 4.423732 ACTGTGTTTCAGATGTTGCAAAC 58.576 39.130 0.00 0.00 46.42 2.93
5090 6964 7.840342 TTGCAAACATGTAGTCAAATTGTTT 57.160 28.000 0.00 0.00 40.18 2.83
5188 7062 1.082366 GCGTGCACCCTTGTTTACG 60.082 57.895 12.15 0.00 33.05 3.18
5283 7158 5.924475 ATACCGTGATGCTGCTTTTATAC 57.076 39.130 0.00 0.00 0.00 1.47
5313 7188 7.862675 AGTAAAAATATACCACTGCTTCTCCT 58.137 34.615 0.00 0.00 0.00 3.69
5322 7197 3.405831 CACTGCTTCTCCTTGTGATTCA 58.594 45.455 0.00 0.00 0.00 2.57
5429 7306 6.986904 TGTAATATGGTAAAACATCGTGCA 57.013 33.333 0.00 0.00 32.39 4.57
5437 7314 6.504398 TGGTAAAACATCGTGCATTTGTTTA 58.496 32.000 18.77 6.62 41.39 2.01
5467 7346 6.605995 GGGAGTATTACTTAGCCATTTGGTTT 59.394 38.462 0.00 0.00 37.57 3.27
5522 7401 2.499289 TGGGCTCTGACATTCTTCTCTC 59.501 50.000 0.00 0.00 0.00 3.20
5575 7454 3.686016 TCTTTGTTGGGATCAGGTTAGC 58.314 45.455 0.00 0.00 0.00 3.09
5605 7484 5.534207 TGCACAACTCAAGGAATTTGAAT 57.466 34.783 0.00 0.00 44.84 2.57
5624 7506 6.884280 TGAATGTTCTCCTCCTTTTTCTTC 57.116 37.500 0.00 0.00 0.00 2.87
5851 7743 3.038017 CTCAAATAATGCGGCATGAACG 58.962 45.455 17.43 0.56 0.00 3.95
5900 7792 5.809464 TGAATATTACAAGCAATGCTGTCG 58.191 37.500 9.14 3.04 39.62 4.35
5906 7798 3.628017 ACAAGCAATGCTGTCGTAAAAC 58.372 40.909 9.14 0.00 39.62 2.43
5908 7800 1.871039 AGCAATGCTGTCGTAAAACGT 59.129 42.857 7.07 0.00 39.24 3.99
5914 7806 2.283086 TGCTGTCGTAAAACGTTCACTG 59.717 45.455 0.00 0.53 43.14 3.66
5926 7818 3.206150 ACGTTCACTGCTCATTTCACTT 58.794 40.909 0.00 0.00 0.00 3.16
5932 7824 2.288030 ACTGCTCATTTCACTTTGCTGC 60.288 45.455 0.00 0.00 0.00 5.25
5934 7826 2.056577 GCTCATTTCACTTTGCTGCAC 58.943 47.619 0.00 0.00 0.00 4.57
6013 7905 2.455674 TTGATGTGCAGTTAGCTCGT 57.544 45.000 0.00 0.00 45.94 4.18
6043 7935 4.672409 TGCGTGTCTACATTGATCTGTAG 58.328 43.478 13.45 13.45 46.55 2.74
6063 7955 5.877012 TGTAGACGTCTTAAGGTACGATTCT 59.123 40.000 25.44 15.41 41.55 2.40
6064 7956 7.041721 TGTAGACGTCTTAAGGTACGATTCTA 58.958 38.462 25.44 14.64 41.55 2.10
6065 7957 6.356757 AGACGTCTTAAGGTACGATTCTAC 57.643 41.667 19.93 0.00 41.55 2.59
6066 7958 5.006165 AGACGTCTTAAGGTACGATTCTACG 59.994 44.000 19.93 12.43 41.55 3.51
6108 8000 8.344831 CACTTTCTTGAGATGTTTATTGACACA 58.655 33.333 0.00 0.00 31.30 3.72
6203 8133 3.750371 TGCTTACTGTACCTGCACAATT 58.250 40.909 5.57 0.00 0.00 2.32
6246 8176 4.397417 CACTTCACCCTCATGATTTTCCTC 59.603 45.833 0.00 0.00 0.00 3.71
6247 8177 3.652057 TCACCCTCATGATTTTCCTCC 57.348 47.619 0.00 0.00 0.00 4.30
6251 8181 3.790408 ACCCTCATGATTTTCCTCCTCAT 59.210 43.478 0.00 0.00 0.00 2.90
6289 8222 2.575108 TCGAAGCGACCTGTACCAT 58.425 52.632 0.00 0.00 0.00 3.55
6312 8245 3.698029 AGTTTGCAGTTGCTGTTACAG 57.302 42.857 8.18 8.18 42.66 2.74
6314 8247 3.443681 AGTTTGCAGTTGCTGTTACAGTT 59.556 39.130 14.23 0.00 42.66 3.16
6395 8332 7.770433 TGATTGAATCATTTACAGACCGATTCT 59.230 33.333 3.29 0.00 41.52 2.40
6423 8360 7.696992 TTAATAACAAGCGAAGAAATCCCTT 57.303 32.000 0.00 0.00 0.00 3.95
6438 8375 2.795329 TCCCTTGCAGATTCTGTTTCC 58.205 47.619 14.90 0.00 33.43 3.13
6478 8416 7.065324 GTCCCACGTTTGAATGTTCTCATTATA 59.935 37.037 0.00 0.00 43.33 0.98
6505 8443 0.899720 TTCCTACACCGGACACATCC 59.100 55.000 9.46 0.00 42.28 3.51
6516 8454 1.550524 GGACACATCCTAGTGCAGACA 59.449 52.381 0.00 0.00 43.23 3.41
6524 8462 3.227614 TCCTAGTGCAGACAGTACAACA 58.772 45.455 0.00 0.00 35.00 3.33
6529 8467 3.623060 AGTGCAGACAGTACAACAAACAG 59.377 43.478 0.00 0.00 35.00 3.16
6538 8476 2.341846 ACAACAAACAGTCGACCCAT 57.658 45.000 13.01 0.00 0.00 4.00
6802 9049 7.645402 ACTACTGCACCATTTTACTTGTTAAC 58.355 34.615 0.00 0.00 0.00 2.01
6912 9159 2.525105 ATTACGCTCCCCCATTTGTT 57.475 45.000 0.00 0.00 0.00 2.83
6935 9182 3.569491 CAAATGGGGCATCTATGTTCCT 58.431 45.455 0.00 0.00 0.00 3.36
6946 9193 6.064717 GCATCTATGTTCCTGGTTATCCTTT 58.935 40.000 0.00 0.00 34.23 3.11
6947 9194 6.547510 GCATCTATGTTCCTGGTTATCCTTTT 59.452 38.462 0.00 0.00 34.23 2.27
6948 9195 7.469181 GCATCTATGTTCCTGGTTATCCTTTTG 60.469 40.741 0.00 0.00 34.23 2.44
6963 9210 0.592637 TTTTGACCACATCAGCTGCG 59.407 50.000 9.47 5.02 38.99 5.18
6972 9219 2.095617 CACATCAGCTGCGACATCAAAA 60.096 45.455 9.47 0.00 0.00 2.44
6973 9220 2.751259 ACATCAGCTGCGACATCAAAAT 59.249 40.909 9.47 0.00 0.00 1.82
7002 9249 3.120041 GTTGATTTTGTGGTTGTTCGGG 58.880 45.455 0.00 0.00 0.00 5.14
7024 9271 2.552315 CAGTTGGCCGTTTAATCTGTGT 59.448 45.455 0.00 0.00 0.00 3.72
7081 9328 5.163713 CCATCTGGATTTCCTTTTTCTCGAC 60.164 44.000 0.00 0.00 37.39 4.20
7094 9341 2.282958 TCGACCAACTCCGCCTCT 60.283 61.111 0.00 0.00 0.00 3.69
7110 9357 1.068333 CCTCTTTCGAAACCGACCGTA 60.068 52.381 6.47 0.00 35.58 4.02
7135 9382 7.524912 AGATGTCATTTGAAACAGAGAATTCG 58.475 34.615 0.00 0.00 0.00 3.34
7138 9385 7.874940 TGTCATTTGAAACAGAGAATTCGAAT 58.125 30.769 4.39 4.39 39.24 3.34
7144 9391 2.544685 ACAGAGAATTCGAATGAGGCG 58.455 47.619 12.25 3.64 0.00 5.52
7180 9427 4.580167 ACACGACGGCCTGTATATAAGTAA 59.420 41.667 0.00 0.00 0.00 2.24
7184 9431 6.154445 CGACGGCCTGTATATAAGTAATTGT 58.846 40.000 0.00 0.00 0.00 2.71
7185 9432 7.040478 ACGACGGCCTGTATATAAGTAATTGTA 60.040 37.037 0.00 0.00 0.00 2.41
7225 9472 9.833182 TTTCAAAAATGCTCCAAAACTTTTAAC 57.167 25.926 0.00 0.00 0.00 2.01
7235 9482 6.531021 TCCAAAACTTTTAACCAAACCAACA 58.469 32.000 0.00 0.00 0.00 3.33
7237 9484 7.665974 TCCAAAACTTTTAACCAAACCAACAAT 59.334 29.630 0.00 0.00 0.00 2.71
7243 9490 7.977293 ACTTTTAACCAAACCAACAATACAGAC 59.023 33.333 0.00 0.00 0.00 3.51
7250 9497 4.640771 ACCAACAATACAGACAGATGGT 57.359 40.909 0.00 0.00 35.20 3.55
7252 9499 4.202461 ACCAACAATACAGACAGATGGTGT 60.202 41.667 0.00 0.00 44.49 4.16
7253 9500 4.154737 CCAACAATACAGACAGATGGTGTG 59.845 45.833 0.00 0.00 45.79 3.82
7258 9505 1.888215 CAGACAGATGGTGTGTTGCT 58.112 50.000 0.00 0.00 40.56 3.91
7259 9506 1.534163 CAGACAGATGGTGTGTTGCTG 59.466 52.381 0.00 0.00 40.56 4.41
7260 9507 0.239347 GACAGATGGTGTGTTGCTGC 59.761 55.000 0.00 0.00 40.56 5.25
7261 9508 1.174712 ACAGATGGTGTGTTGCTGCC 61.175 55.000 0.00 0.00 38.28 4.85
7262 9509 1.968017 AGATGGTGTGTTGCTGCCG 60.968 57.895 0.00 0.00 0.00 5.69
7263 9510 3.615536 GATGGTGTGTTGCTGCCGC 62.616 63.158 0.00 0.00 0.00 6.53
7292 9539 4.148825 CGCCTGAGCTAGCCGGTT 62.149 66.667 12.13 0.00 36.60 4.44
7293 9540 2.202946 GCCTGAGCTAGCCGGTTC 60.203 66.667 12.13 2.58 35.50 3.62
7325 9572 2.747467 CGCATGGGAAGTCATCAAGGAT 60.747 50.000 3.11 0.00 0.00 3.24
7329 9576 1.303309 GGAAGTCATCAAGGATGCGG 58.697 55.000 1.37 0.00 39.63 5.69
7337 9584 1.262417 TCAAGGATGCGGTACTGTCA 58.738 50.000 3.10 2.48 0.00 3.58
7346 9593 0.809385 CGGTACTGTCAGACCATCGT 59.191 55.000 6.91 0.00 35.26 3.73
7376 9623 2.151202 GAAACCTCAAAGTCATCGCCA 58.849 47.619 0.00 0.00 0.00 5.69
7398 9645 6.127366 GCCACTGAAAGATCCATAAATCCAAA 60.127 38.462 0.00 0.00 37.43 3.28
7441 9690 1.303317 CAAACCTTAGGGCGGCAGT 60.303 57.895 12.47 0.00 35.63 4.40
7443 9692 0.035725 AAACCTTAGGGCGGCAGTAC 60.036 55.000 12.47 0.00 35.63 2.73
7466 9715 3.142838 GGCAGGCCGCATCATTGT 61.143 61.111 18.87 0.00 45.17 2.71
7467 9716 2.103538 GCAGGCCGCATCATTGTG 59.896 61.111 13.61 0.00 41.79 3.33
7468 9717 2.409055 GCAGGCCGCATCATTGTGA 61.409 57.895 13.61 0.00 41.79 3.58
7469 9718 1.936436 GCAGGCCGCATCATTGTGAA 61.936 55.000 13.61 0.00 41.79 3.18
7470 9719 0.742505 CAGGCCGCATCATTGTGAAT 59.257 50.000 0.00 0.00 35.26 2.57
7479 9728 4.266739 CGCATCATTGTGAATTTGTGATGG 59.733 41.667 13.54 3.04 43.81 3.51
7485 9734 4.371624 TGTGAATTTGTGATGGAGAGGT 57.628 40.909 0.00 0.00 0.00 3.85
7486 9735 4.074259 TGTGAATTTGTGATGGAGAGGTG 58.926 43.478 0.00 0.00 0.00 4.00
7489 9738 4.018141 TGAATTTGTGATGGAGAGGTGGAT 60.018 41.667 0.00 0.00 0.00 3.41
7531 9780 5.352569 CGTCTATTGGAGCATTTCTTGAAGT 59.647 40.000 0.00 0.00 0.00 3.01
7556 9968 5.178797 ACAGTCAATCCTTGATACTTTCGG 58.821 41.667 0.00 0.00 42.47 4.30
7557 9969 5.178797 CAGTCAATCCTTGATACTTTCGGT 58.821 41.667 0.00 0.00 42.47 4.69
7558 9970 5.643777 CAGTCAATCCTTGATACTTTCGGTT 59.356 40.000 0.00 0.00 42.47 4.44
7611 10024 0.324552 TGCATGGGAATTCTGGTGGG 60.325 55.000 5.23 0.00 0.00 4.61
7612 10025 1.044790 GCATGGGAATTCTGGTGGGG 61.045 60.000 5.23 0.00 0.00 4.96
7630 10043 2.963101 GGGGGCCCATTTCTATAAACAC 59.037 50.000 26.86 0.00 35.81 3.32
7632 10045 2.621526 GGGCCCATTTCTATAAACACCG 59.378 50.000 19.95 0.00 0.00 4.94
7635 10048 3.942748 GCCCATTTCTATAAACACCGACA 59.057 43.478 0.00 0.00 0.00 4.35
7636 10049 4.396790 GCCCATTTCTATAAACACCGACAA 59.603 41.667 0.00 0.00 0.00 3.18
7637 10050 5.448632 GCCCATTTCTATAAACACCGACAAG 60.449 44.000 0.00 0.00 0.00 3.16
7638 10051 5.448632 CCCATTTCTATAAACACCGACAAGC 60.449 44.000 0.00 0.00 0.00 4.01
7639 10052 4.914312 TTTCTATAAACACCGACAAGCG 57.086 40.909 0.00 0.00 40.47 4.68
7640 10053 3.853831 TCTATAAACACCGACAAGCGA 57.146 42.857 0.00 0.00 44.57 4.93
7641 10054 3.504863 TCTATAAACACCGACAAGCGAC 58.495 45.455 0.00 0.00 44.57 5.19
7642 10055 2.157834 ATAAACACCGACAAGCGACA 57.842 45.000 0.00 0.00 44.57 4.35
7643 10056 1.210870 TAAACACCGACAAGCGACAC 58.789 50.000 0.00 0.00 44.57 3.67
7644 10057 1.758319 AAACACCGACAAGCGACACG 61.758 55.000 0.00 0.00 44.57 4.49
7645 10058 2.657296 CACCGACAAGCGACACGT 60.657 61.111 0.00 0.00 44.57 4.49
7652 10065 2.026038 CGACAAGCGACACGTACAATAC 59.974 50.000 0.00 0.00 44.57 1.89
7653 10066 2.331194 ACAAGCGACACGTACAATACC 58.669 47.619 0.00 0.00 0.00 2.73
7667 10080 2.500098 ACAATACCTGTATGTGTCGCCT 59.500 45.455 0.00 0.00 36.10 5.52
7672 10085 1.410517 CCTGTATGTGTCGCCTGAGAT 59.589 52.381 0.00 0.00 0.00 2.75
7676 10089 1.267574 ATGTGTCGCCTGAGATGGGT 61.268 55.000 0.00 0.00 0.00 4.51
7683 10096 1.384502 CCTGAGATGGGTGCCCCTA 60.385 63.158 11.10 0.00 45.70 3.53
7715 10128 1.133407 CAGCGAGTCTAGGTTCTGACC 59.867 57.143 0.00 0.00 46.92 4.02
7740 10153 2.917751 GGGGGCGATCGAGATGGA 60.918 66.667 21.57 0.00 0.00 3.41
7741 10154 2.340443 GGGGCGATCGAGATGGAC 59.660 66.667 21.57 0.00 0.00 4.02
7750 10163 3.399181 GAGATGGACCGGCCCACA 61.399 66.667 13.47 0.07 39.34 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.544825 CCCCCGACACTCACATGTCT 61.545 60.000 0.00 0.00 45.73 3.41
1 2 1.079127 CCCCCGACACTCACATGTC 60.079 63.158 0.00 0.00 44.68 3.06
2 3 3.068881 CCCCCGACACTCACATGT 58.931 61.111 0.00 0.00 34.78 3.21
3 4 2.436646 GCCCCCGACACTCACATG 60.437 66.667 0.00 0.00 0.00 3.21
4 5 4.082523 CGCCCCCGACACTCACAT 62.083 66.667 0.00 0.00 36.29 3.21
86 87 3.838271 TCAGGGACGAGCGGATGC 61.838 66.667 0.00 0.00 43.24 3.91
87 88 2.105128 GTCAGGGACGAGCGGATG 59.895 66.667 0.00 0.00 0.00 3.51
96 97 2.680352 TGCTCCTCCGTCAGGGAC 60.680 66.667 0.00 0.00 43.67 4.46
97 98 2.363018 CTGCTCCTCCGTCAGGGA 60.363 66.667 0.00 0.00 43.67 4.20
98 99 4.154347 GCTGCTCCTCCGTCAGGG 62.154 72.222 0.00 0.00 43.67 4.45
99 100 4.504916 CGCTGCTCCTCCGTCAGG 62.505 72.222 0.00 0.00 45.15 3.86
100 101 4.504916 CCGCTGCTCCTCCGTCAG 62.505 72.222 0.00 0.00 0.00 3.51
102 103 3.760035 TTCCGCTGCTCCTCCGTC 61.760 66.667 0.00 0.00 0.00 4.79
103 104 4.070552 GTTCCGCTGCTCCTCCGT 62.071 66.667 0.00 0.00 0.00 4.69
104 105 3.589654 TTGTTCCGCTGCTCCTCCG 62.590 63.158 0.00 0.00 0.00 4.63
105 106 1.743252 CTTGTTCCGCTGCTCCTCC 60.743 63.158 0.00 0.00 0.00 4.30
106 107 2.394563 GCTTGTTCCGCTGCTCCTC 61.395 63.158 0.00 0.00 0.00 3.71
107 108 2.359230 GCTTGTTCCGCTGCTCCT 60.359 61.111 0.00 0.00 0.00 3.69
108 109 2.359230 AGCTTGTTCCGCTGCTCC 60.359 61.111 0.00 0.00 36.15 4.70
109 110 2.866028 CAGCTTGTTCCGCTGCTC 59.134 61.111 0.00 0.00 46.98 4.26
113 114 3.234630 TACCGCAGCTTGTTCCGCT 62.235 57.895 0.00 0.00 38.49 5.52
114 115 2.740826 TACCGCAGCTTGTTCCGC 60.741 61.111 0.00 0.00 0.00 5.54
115 116 2.726691 CGTACCGCAGCTTGTTCCG 61.727 63.158 0.00 0.00 0.00 4.30
116 117 3.165498 CGTACCGCAGCTTGTTCC 58.835 61.111 0.00 0.00 0.00 3.62
136 137 3.490759 CATCGTGTGGCTGTCGGC 61.491 66.667 0.00 0.00 40.90 5.54
137 138 2.048222 ACATCGTGTGGCTGTCGG 60.048 61.111 0.00 0.00 0.00 4.79
138 139 3.159070 CACATCGTGTGGCTGTCG 58.841 61.111 9.43 0.00 44.27 4.35
146 147 1.899814 AGTACATGGACCACATCGTGT 59.100 47.619 3.84 0.00 37.84 4.49
147 148 2.672961 AGTACATGGACCACATCGTG 57.327 50.000 3.84 0.00 37.84 4.35
148 149 2.416836 CGAAGTACATGGACCACATCGT 60.417 50.000 3.84 0.00 37.84 3.73
149 150 2.193447 CGAAGTACATGGACCACATCG 58.807 52.381 3.84 6.61 37.84 3.84
150 151 1.933853 GCGAAGTACATGGACCACATC 59.066 52.381 3.84 0.00 37.84 3.06
151 152 1.739035 CGCGAAGTACATGGACCACAT 60.739 52.381 3.84 0.00 41.57 3.21
152 153 0.389296 CGCGAAGTACATGGACCACA 60.389 55.000 3.84 0.00 0.00 4.17
153 154 1.693083 GCGCGAAGTACATGGACCAC 61.693 60.000 12.10 0.00 0.00 4.16
154 155 1.447140 GCGCGAAGTACATGGACCA 60.447 57.895 12.10 0.00 0.00 4.02
155 156 2.514013 CGCGCGAAGTACATGGACC 61.514 63.158 28.94 0.00 0.00 4.46
156 157 2.995482 CGCGCGAAGTACATGGAC 59.005 61.111 28.94 0.00 0.00 4.02
157 158 2.883730 GCGCGCGAAGTACATGGA 60.884 61.111 37.18 0.00 0.00 3.41
158 159 3.925238 GGCGCGCGAAGTACATGG 61.925 66.667 37.18 0.00 0.00 3.66
159 160 4.265630 CGGCGCGCGAAGTACATG 62.266 66.667 37.18 8.81 0.00 3.21
174 175 4.514577 ATCTGTTCCTCGCGGCGG 62.515 66.667 23.46 12.92 0.00 6.13
175 176 2.956964 GATCTGTTCCTCGCGGCG 60.957 66.667 17.70 17.70 0.00 6.46
176 177 2.956964 CGATCTGTTCCTCGCGGC 60.957 66.667 6.13 0.00 0.00 6.53
180 181 1.066587 GAGGGCGATCTGTTCCTCG 59.933 63.158 0.00 0.00 36.78 4.63
181 182 1.066587 CGAGGGCGATCTGTTCCTC 59.933 63.158 0.00 0.00 41.62 3.71
182 183 1.668101 GACGAGGGCGATCTGTTCCT 61.668 60.000 0.00 0.00 41.64 3.36
183 184 1.227002 GACGAGGGCGATCTGTTCC 60.227 63.158 0.00 0.00 41.64 3.62
184 185 0.103208 ATGACGAGGGCGATCTGTTC 59.897 55.000 0.00 0.00 41.64 3.18
185 186 0.103208 GATGACGAGGGCGATCTGTT 59.897 55.000 0.00 0.00 41.64 3.16
186 187 1.037579 TGATGACGAGGGCGATCTGT 61.038 55.000 0.00 0.00 41.64 3.41
187 188 0.103026 TTGATGACGAGGGCGATCTG 59.897 55.000 0.00 0.00 41.64 2.90
188 189 0.103208 GTTGATGACGAGGGCGATCT 59.897 55.000 0.00 0.00 41.64 2.75
189 190 2.594541 GTTGATGACGAGGGCGATC 58.405 57.895 0.00 0.00 41.64 3.69
190 191 4.835927 GTTGATGACGAGGGCGAT 57.164 55.556 0.00 0.00 41.64 4.58
310 314 3.745803 GAGGGCGGACTCGTCGTT 61.746 66.667 0.00 0.00 42.74 3.85
329 333 1.684734 TAGTCCTCCTTCGCCCACC 60.685 63.158 0.00 0.00 0.00 4.61
377 381 4.139234 GACCTCCGCGTACACCCC 62.139 72.222 4.92 0.00 0.00 4.95
381 385 3.066190 CCTGGACCTCCGCGTACA 61.066 66.667 4.92 0.00 39.43 2.90
443 447 2.100603 CTCGTCCTTCTCGTCGCC 59.899 66.667 0.00 0.00 0.00 5.54
569 586 2.159338 TGTAGAAGCGGGTGTAATCGTC 60.159 50.000 0.00 0.00 0.00 4.20
570 587 1.820519 TGTAGAAGCGGGTGTAATCGT 59.179 47.619 0.00 0.00 0.00 3.73
571 588 2.460918 CTGTAGAAGCGGGTGTAATCG 58.539 52.381 0.00 0.00 0.00 3.34
572 589 2.822764 CCTGTAGAAGCGGGTGTAATC 58.177 52.381 0.00 0.00 0.00 1.75
573 590 1.134491 GCCTGTAGAAGCGGGTGTAAT 60.134 52.381 0.00 0.00 37.24 1.89
574 591 0.248289 GCCTGTAGAAGCGGGTGTAA 59.752 55.000 0.00 0.00 37.24 2.41
645 670 0.445043 CGCCTAAAACTACGCCAACC 59.555 55.000 0.00 0.00 0.00 3.77
719 747 0.787787 TCGTCGATTTTGGCACGAAG 59.212 50.000 0.00 2.49 38.28 3.79
735 763 5.179742 TCCGTACAATTTATTGCAAACTCGT 59.820 36.000 1.71 0.00 41.38 4.18
841 874 1.603455 CCAAAAAGAGCCGCCTGGA 60.603 57.895 0.00 0.00 37.49 3.86
883 918 9.474313 TTGGTTACCAAATTATTAGAGCATCTT 57.526 29.630 15.17 0.00 41.52 2.40
957 992 2.104622 GGATTTGGGGCATATGTTTGGG 59.895 50.000 4.29 0.00 0.00 4.12
985 1020 5.549347 TGTAAAGTGATGGTTTAACGCCTA 58.451 37.500 0.00 0.00 0.00 3.93
986 1021 4.391155 TGTAAAGTGATGGTTTAACGCCT 58.609 39.130 0.00 0.00 0.00 5.52
988 1023 4.214758 ACCTGTAAAGTGATGGTTTAACGC 59.785 41.667 0.00 0.00 0.00 4.84
989 1024 5.685841 CACCTGTAAAGTGATGGTTTAACG 58.314 41.667 0.00 0.00 37.42 3.18
990 1025 5.240844 AGCACCTGTAAAGTGATGGTTTAAC 59.759 40.000 0.00 0.00 37.42 2.01
1024 2446 2.158871 TGGACGCTAGTGAGTGGTTTTT 60.159 45.455 10.99 0.00 37.52 1.94
1075 2499 2.829384 GGTGTGTGGAAGGCTGGGA 61.829 63.158 0.00 0.00 0.00 4.37
1076 2500 2.282462 GGTGTGTGGAAGGCTGGG 60.282 66.667 0.00 0.00 0.00 4.45
1859 3292 1.966451 GAAACCACAGGCACCCTCG 60.966 63.158 0.00 0.00 0.00 4.63
1861 3294 1.456287 GAGAAACCACAGGCACCCT 59.544 57.895 0.00 0.00 0.00 4.34
1864 3297 2.617274 GGCGAGAAACCACAGGCAC 61.617 63.158 0.00 0.00 0.00 5.01
1869 3302 1.445410 CGATCGGCGAGAAACCACA 60.445 57.895 17.22 0.00 44.57 4.17
1893 3326 1.838073 AACGACCCAGCCTTCGGATT 61.838 55.000 0.00 0.00 39.63 3.01
1898 3331 3.982829 GGAAACGACCCAGCCTTC 58.017 61.111 0.00 0.00 0.00 3.46
1915 3359 3.692791 TGATCCTGTACGAGATTGACG 57.307 47.619 0.00 0.00 0.00 4.35
1918 3362 6.703165 TGATTGATTGATCCTGTACGAGATTG 59.297 38.462 0.00 0.00 0.00 2.67
1923 3367 4.751600 GCATGATTGATTGATCCTGTACGA 59.248 41.667 0.00 0.00 0.00 3.43
1990 3434 0.322456 ATGGCGCCAAACTAGCAGAA 60.322 50.000 36.33 4.88 0.00 3.02
2011 3455 0.038526 ACGGAACACAGCTTCCTACG 60.039 55.000 0.83 0.00 38.08 3.51
2038 3489 3.695606 GAGCAGAGGTGTCCGGCA 61.696 66.667 0.00 0.00 0.00 5.69
2039 3490 3.386237 AGAGCAGAGGTGTCCGGC 61.386 66.667 0.00 0.00 0.00 6.13
2067 3518 0.906066 TGCACCGCTTATAGGGAACA 59.094 50.000 0.00 0.00 0.00 3.18
2068 3519 2.256117 ATGCACCGCTTATAGGGAAC 57.744 50.000 0.00 0.00 0.00 3.62
2070 3521 2.037251 GAGAATGCACCGCTTATAGGGA 59.963 50.000 0.00 0.00 0.00 4.20
2102 3560 3.439154 TCCTATGCCTCAAAATTGCCAA 58.561 40.909 0.00 0.00 0.00 4.52
2105 3563 2.428171 TGCTCCTATGCCTCAAAATTGC 59.572 45.455 0.00 0.00 0.00 3.56
2268 3730 0.984995 ATATTTCCCCTCGGCTAGGC 59.015 55.000 6.15 6.15 45.03 3.93
2269 3731 3.775316 ACATATATTTCCCCTCGGCTAGG 59.225 47.826 0.00 0.00 46.09 3.02
2313 3775 1.136336 GCAAAGTCGTAAACCTGCGAG 60.136 52.381 0.00 0.00 40.52 5.03
2315 3777 0.584396 TGCAAAGTCGTAAACCTGCG 59.416 50.000 0.00 0.00 39.14 5.18
2316 3778 2.584791 CATGCAAAGTCGTAAACCTGC 58.415 47.619 0.00 0.00 37.60 4.85
2325 3789 2.917701 TATGTTGGCATGCAAAGTCG 57.082 45.000 21.36 0.00 36.58 4.18
2394 3862 4.335416 TCCCTGTATGAAAGAAAAGGCTG 58.665 43.478 0.00 0.00 0.00 4.85
2415 3883 7.435068 ACCATGCTACCGAATTTATGTATTC 57.565 36.000 0.00 0.00 0.00 1.75
2417 3885 7.676947 AGTACCATGCTACCGAATTTATGTAT 58.323 34.615 0.00 0.00 0.00 2.29
2418 3886 7.058023 AGTACCATGCTACCGAATTTATGTA 57.942 36.000 0.00 0.00 0.00 2.29
2420 3888 7.375834 TCTAGTACCATGCTACCGAATTTATG 58.624 38.462 0.00 0.00 0.00 1.90
2421 3889 7.534723 TCTAGTACCATGCTACCGAATTTAT 57.465 36.000 0.00 0.00 0.00 1.40
2422 3890 6.964807 TCTAGTACCATGCTACCGAATTTA 57.035 37.500 0.00 0.00 0.00 1.40
2507 3984 7.541783 GTGCTGAACATATCTCATCAGTAGATC 59.458 40.741 0.00 0.00 41.03 2.75
2513 3990 4.958509 AGGTGCTGAACATATCTCATCAG 58.041 43.478 0.00 0.00 41.69 2.90
2629 4119 9.751542 GTAGCATCTTGAGTATACAGTACAAAT 57.248 33.333 5.50 1.67 0.00 2.32
2643 4133 5.170021 GCATGAGATAGGTAGCATCTTGAG 58.830 45.833 0.00 3.95 32.86 3.02
2691 4181 2.892852 CAAAGTGCCTCATCTCCCAAAA 59.107 45.455 0.00 0.00 0.00 2.44
2713 4211 6.650807 TGTGCAATGCTAGCTTATAATCCTAC 59.349 38.462 17.23 3.17 0.00 3.18
2733 4231 1.067425 GCAATTGAGCCTGATTGTGCA 60.067 47.619 10.34 0.00 36.03 4.57
2734 4232 1.203994 AGCAATTGAGCCTGATTGTGC 59.796 47.619 10.34 0.00 36.03 4.57
2735 4233 3.587797 AAGCAATTGAGCCTGATTGTG 57.412 42.857 10.34 0.00 36.03 3.33
2743 4241 5.356882 TTGCGTATATAAGCAATTGAGCC 57.643 39.130 25.87 0.00 46.83 4.70
2755 4253 9.929722 GAACAAGAACATCAAATTGCGTATATA 57.070 29.630 0.00 0.00 0.00 0.86
2761 4259 5.886715 TTGAACAAGAACATCAAATTGCG 57.113 34.783 0.00 0.00 30.60 4.85
2787 4285 7.604927 AGGACGATATATCTAGTCACAGAGAAC 59.395 40.741 17.37 3.69 35.49 3.01
2863 4361 5.986004 ACGAAAGAAGTTGAATCGACTTT 57.014 34.783 16.30 1.83 38.11 2.66
2884 4383 4.425577 ACATTCATCTCGAAAGGCAAAC 57.574 40.909 0.00 0.00 37.12 2.93
2887 4386 3.118629 AGCTACATTCATCTCGAAAGGCA 60.119 43.478 0.00 0.00 37.12 4.75
2921 4420 4.746611 GGAAAGAAGTGTGCCAAGAAATTG 59.253 41.667 0.00 0.00 0.00 2.32
2926 4425 2.727123 TGGAAAGAAGTGTGCCAAGA 57.273 45.000 0.00 0.00 0.00 3.02
3455 5196 3.459598 AGTACCTGTCCATGGCATATTGT 59.540 43.478 6.96 1.87 0.00 2.71
3481 5222 7.194607 TGAAAGTCTAAAATGTCAGCAAGAG 57.805 36.000 0.00 0.00 0.00 2.85
3510 5251 7.898014 TGATAAGGCTCTCTTACAATAGACA 57.102 36.000 0.00 0.00 40.40 3.41
3543 5284 6.166982 GTCAGAACTAAAAGAGTACATGGCT 58.833 40.000 0.00 0.00 37.44 4.75
3569 5310 6.828502 ATCACAGCGTAATATATTATGGCG 57.171 37.500 21.05 14.91 32.97 5.69
3703 5444 4.478206 TTGGGAAATGCTGTTTCAAACA 57.522 36.364 2.24 2.24 39.52 2.83
3754 5495 1.258445 TGACCTCCTCGCCTTCCTTC 61.258 60.000 0.00 0.00 0.00 3.46
3838 5579 0.404426 AGGGAACAAACTGTAGGCCC 59.596 55.000 0.00 0.00 36.91 5.80
3885 5626 5.448089 GGACGAAGCAAGAAAACACAAAGTA 60.448 40.000 0.00 0.00 0.00 2.24
4050 5791 2.698797 CGAGTAGCATTAGGAGGGGAAA 59.301 50.000 0.00 0.00 0.00 3.13
4226 5973 7.301054 CACACAAAGAGAATTTACTGATCACC 58.699 38.462 0.00 0.00 0.00 4.02
4245 5992 1.604755 GTTATGGCGAACACCACACAA 59.395 47.619 0.00 0.00 44.17 3.33
4312 6069 7.994425 TTAATTGACAGACTCCATGCTTAAA 57.006 32.000 0.00 0.00 0.00 1.52
4352 6109 4.020928 AGCTCACAATTCATTCATGCCAAA 60.021 37.500 0.00 0.00 0.00 3.28
4449 6206 1.213926 AGAGAGGGCACAAATGGATCC 59.786 52.381 4.20 4.20 0.00 3.36
4598 6355 6.859112 ATGTGTACATAACTGAGGAACTCT 57.141 37.500 0.00 0.00 45.35 3.24
4629 6386 6.295575 CCAAATTACATAAGCAACCCAAAGGA 60.296 38.462 0.00 0.00 36.73 3.36
4646 6403 4.079253 TCTCTTGCCCAGAACCAAATTAC 58.921 43.478 0.00 0.00 0.00 1.89
4754 6511 6.705825 CCCTTGTTTTACAGAAATGAAAAGGG 59.294 38.462 0.00 0.00 0.00 3.95
4755 6512 7.496747 TCCCTTGTTTTACAGAAATGAAAAGG 58.503 34.615 0.00 0.00 0.00 3.11
4941 6812 1.866601 GCGTGGTAGTTTACGGTGTTT 59.133 47.619 0.00 0.00 40.43 2.83
4959 6830 1.541147 TCAAGCATCAGGAAAAAGGCG 59.459 47.619 0.00 0.00 0.00 5.52
5018 6889 6.000219 CCATGAAATAGGTCTCACCCATTAG 59.000 44.000 0.00 0.00 39.75 1.73
5090 6964 2.354510 GCACATTTAGCGCCATACTTCA 59.645 45.455 2.29 0.00 0.00 3.02
5188 7062 7.973944 ACATTTAGAACAACACAAACTCTTTCC 59.026 33.333 0.00 0.00 0.00 3.13
5261 7135 4.447724 CGTATAAAAGCAGCATCACGGTAT 59.552 41.667 0.00 0.00 0.00 2.73
5322 7197 9.515226 TTGCTTCCAACAGTAACTAAAGATTAT 57.485 29.630 0.00 0.00 0.00 1.28
5437 7314 6.576778 ATGGCTAAGTAATACTCCCTTTGT 57.423 37.500 0.00 0.00 0.00 2.83
5467 7346 6.183360 GCATATGTCATCCATTGGAAGGAAAA 60.183 38.462 9.98 3.64 38.93 2.29
5575 7454 2.551459 CCTTGAGTTGTGCAAGAGGAAG 59.449 50.000 0.00 0.00 44.16 3.46
5605 7484 5.630415 TGAGAAGAAAAAGGAGGAGAACA 57.370 39.130 0.00 0.00 0.00 3.18
5624 7506 5.718724 AAAGGGAGAGCAAGAAATTTGAG 57.281 39.130 0.00 0.00 0.00 3.02
5774 7656 1.210478 TGCAGGAATGCCTACCTTCTC 59.790 52.381 0.00 0.00 44.80 2.87
5799 7681 4.032960 TGTGGATGTAATGGCTGAAACT 57.967 40.909 0.00 0.00 0.00 2.66
5851 7743 2.936498 AGTGTGCAAGTACAGTTGTGTC 59.064 45.455 0.00 0.00 38.19 3.67
5900 7792 5.395486 GTGAAATGAGCAGTGAACGTTTTAC 59.605 40.000 0.46 5.35 0.00 2.01
5906 7798 3.885484 AAGTGAAATGAGCAGTGAACG 57.115 42.857 0.00 0.00 0.00 3.95
5908 7800 3.633525 AGCAAAGTGAAATGAGCAGTGAA 59.366 39.130 0.00 0.00 0.00 3.18
5914 7806 2.056577 GTGCAGCAAAGTGAAATGAGC 58.943 47.619 0.00 0.00 0.00 4.26
5926 7818 1.142870 AGGAACTTACAGGTGCAGCAA 59.857 47.619 19.63 2.64 27.25 3.91
5932 7824 4.385825 TGCACTTTAGGAACTTACAGGTG 58.614 43.478 0.00 0.00 41.75 4.00
5934 7826 4.142600 GCATGCACTTTAGGAACTTACAGG 60.143 45.833 14.21 0.00 41.75 4.00
6013 7905 0.320050 TGTAGACACGCAAGCCATCA 59.680 50.000 0.00 0.00 45.62 3.07
6043 7935 5.193936 CGTAGAATCGTACCTTAAGACGTC 58.806 45.833 7.70 7.70 40.00 4.34
6121 8016 7.047891 ACAAGCAATCTGTTCGATTCCTATAA 58.952 34.615 0.00 0.00 40.33 0.98
6128 8023 5.633830 ATGAACAAGCAATCTGTTCGATT 57.366 34.783 10.22 0.00 43.28 3.34
6132 8027 7.702348 GGGTAATAATGAACAAGCAATCTGTTC 59.298 37.037 8.42 8.42 41.43 3.18
6137 8032 4.976116 GCGGGTAATAATGAACAAGCAATC 59.024 41.667 0.00 0.00 0.00 2.67
6203 8133 4.461081 AGTGGAACAAAAAGCAGTAACACA 59.539 37.500 0.00 0.00 44.16 3.72
6246 8176 6.095440 ACGATGGTCCTGAATTAAAAATGAGG 59.905 38.462 0.00 0.00 0.00 3.86
6247 8177 7.088589 ACGATGGTCCTGAATTAAAAATGAG 57.911 36.000 0.00 0.00 0.00 2.90
6251 8181 5.239351 TCGACGATGGTCCTGAATTAAAAA 58.761 37.500 1.93 0.00 40.17 1.94
6289 8222 3.441922 TGTAACAGCAACTGCAAACTTGA 59.558 39.130 4.22 0.00 45.16 3.02
6312 8245 3.914426 TCTTCTCAATAGGGGCTGAAC 57.086 47.619 0.00 0.00 0.00 3.18
6314 8247 4.927267 TTTTCTTCTCAATAGGGGCTGA 57.073 40.909 0.00 0.00 0.00 4.26
6386 8319 8.545420 TCGCTTGTTATTAATTTAGAATCGGTC 58.455 33.333 0.00 0.00 0.00 4.79
6451 8389 5.856216 ATGAGAACATTCAAACGTGGGACG 61.856 45.833 0.00 0.00 39.63 4.79
6478 8416 1.217183 TCCGGTGTAGGAAGCCTCTAT 59.783 52.381 0.00 0.00 37.36 1.98
6505 8443 4.808895 TGTTTGTTGTACTGTCTGCACTAG 59.191 41.667 0.00 0.00 0.00 2.57
6516 8454 2.168936 TGGGTCGACTGTTTGTTGTACT 59.831 45.455 16.46 0.00 0.00 2.73
6524 8462 3.551846 ACTTTGAATGGGTCGACTGTTT 58.448 40.909 16.46 6.33 0.00 2.83
6529 8467 5.237779 TGTTCTAAACTTTGAATGGGTCGAC 59.762 40.000 7.13 7.13 0.00 4.20
6784 9031 9.962759 GATACGTAGTTAACAAGTAAAATGGTG 57.037 33.333 8.61 0.00 37.78 4.17
6896 9143 1.304134 GGAACAAATGGGGGAGCGT 60.304 57.895 0.00 0.00 0.00 5.07
6897 9144 1.304052 TGGAACAAATGGGGGAGCG 60.304 57.895 0.00 0.00 31.92 5.03
6912 9159 3.565307 GAACATAGATGCCCCATTTGGA 58.435 45.455 0.00 0.00 37.39 3.53
6935 9182 4.991776 TGATGTGGTCAAAAGGATAACCA 58.008 39.130 0.00 0.00 39.42 3.67
6946 9193 0.950555 GTCGCAGCTGATGTGGTCAA 60.951 55.000 20.43 0.00 40.01 3.18
6947 9194 1.374631 GTCGCAGCTGATGTGGTCA 60.375 57.895 20.43 0.00 40.01 4.02
6948 9195 0.742281 ATGTCGCAGCTGATGTGGTC 60.742 55.000 20.43 0.00 40.01 4.02
6963 9210 8.733857 AAATCAACTCTCGAAATTTTGATGTC 57.266 30.769 8.60 0.00 37.07 3.06
6972 9219 6.183360 ACAACCACAAAATCAACTCTCGAAAT 60.183 34.615 0.00 0.00 0.00 2.17
6973 9220 5.124776 ACAACCACAAAATCAACTCTCGAAA 59.875 36.000 0.00 0.00 0.00 3.46
7002 9249 1.539827 ACAGATTAAACGGCCAACTGC 59.460 47.619 2.24 0.00 40.16 4.40
7024 9271 1.140312 GGTATGCCCTTGGGATCAGA 58.860 55.000 10.36 0.00 34.92 3.27
7081 9328 0.320421 TTCGAAAGAGGCGGAGTTGG 60.320 55.000 0.00 0.00 43.69 3.77
7110 9357 7.388776 TCGAATTCTCTGTTTCAAATGACATCT 59.611 33.333 3.52 0.00 0.00 2.90
7135 9382 2.911484 AGAGATTGAACCGCCTCATTC 58.089 47.619 0.00 0.93 0.00 2.67
7138 9385 2.565391 TGTTAGAGATTGAACCGCCTCA 59.435 45.455 0.00 0.00 0.00 3.86
7144 9391 2.921754 CCGTCGTGTTAGAGATTGAACC 59.078 50.000 0.00 0.00 0.00 3.62
7225 9472 5.335897 CCATCTGTCTGTATTGTTGGTTTGG 60.336 44.000 0.00 0.00 0.00 3.28
7235 9482 3.753272 GCAACACACCATCTGTCTGTATT 59.247 43.478 0.00 0.00 0.00 1.89
7237 9484 2.368548 AGCAACACACCATCTGTCTGTA 59.631 45.455 0.00 0.00 0.00 2.74
7243 9490 1.582968 GGCAGCAACACACCATCTG 59.417 57.895 0.00 0.00 0.00 2.90
7266 9513 4.899239 GCTCAGGCGATGGGGACG 62.899 72.222 0.00 0.00 0.00 4.79
7267 9514 2.093537 CTAGCTCAGGCGATGGGGAC 62.094 65.000 0.00 0.00 44.37 4.46
7302 9549 0.322366 TTGATGACTTCCCATGCGCA 60.322 50.000 14.96 14.96 0.00 6.09
7325 9572 0.530744 GATGGTCTGACAGTACCGCA 59.469 55.000 10.38 0.00 38.70 5.69
7329 9576 1.467734 ACGACGATGGTCTGACAGTAC 59.532 52.381 10.38 0.00 41.16 2.73
7337 9584 0.811915 CTTCTCCACGACGATGGTCT 59.188 55.000 0.00 0.00 41.16 3.85
7346 9593 3.134081 ACTTTGAGGTTTCTTCTCCACGA 59.866 43.478 0.00 0.00 0.00 4.35
7376 9623 9.258629 TGATTTTGGATTTATGGATCTTTCAGT 57.741 29.630 0.00 0.00 0.00 3.41
7450 9699 1.936436 TTCACAATGATGCGGCCTGC 61.936 55.000 11.92 11.92 46.70 4.85
7451 9700 0.742505 ATTCACAATGATGCGGCCTG 59.257 50.000 0.00 0.00 0.00 4.85
7452 9701 1.477553 AATTCACAATGATGCGGCCT 58.522 45.000 0.00 0.00 0.00 5.19
7453 9702 1.928503 CAAATTCACAATGATGCGGCC 59.071 47.619 0.00 0.00 0.00 6.13
7454 9703 2.346244 CACAAATTCACAATGATGCGGC 59.654 45.455 0.00 0.00 0.00 6.53
7455 9704 3.835779 TCACAAATTCACAATGATGCGG 58.164 40.909 0.00 0.00 0.00 5.69
7456 9705 4.266739 CCATCACAAATTCACAATGATGCG 59.733 41.667 6.95 0.00 43.42 4.73
7457 9706 5.412640 TCCATCACAAATTCACAATGATGC 58.587 37.500 6.95 0.00 43.42 3.91
7458 9707 6.859017 TCTCCATCACAAATTCACAATGATG 58.141 36.000 5.70 5.70 44.06 3.07
7459 9708 6.096423 CCTCTCCATCACAAATTCACAATGAT 59.904 38.462 0.00 0.00 0.00 2.45
7460 9709 5.416639 CCTCTCCATCACAAATTCACAATGA 59.583 40.000 0.00 0.00 0.00 2.57
7461 9710 5.184479 ACCTCTCCATCACAAATTCACAATG 59.816 40.000 0.00 0.00 0.00 2.82
7462 9711 5.184479 CACCTCTCCATCACAAATTCACAAT 59.816 40.000 0.00 0.00 0.00 2.71
7463 9712 4.520111 CACCTCTCCATCACAAATTCACAA 59.480 41.667 0.00 0.00 0.00 3.33
7464 9713 4.074259 CACCTCTCCATCACAAATTCACA 58.926 43.478 0.00 0.00 0.00 3.58
7465 9714 3.441572 CCACCTCTCCATCACAAATTCAC 59.558 47.826 0.00 0.00 0.00 3.18
7466 9715 3.330405 TCCACCTCTCCATCACAAATTCA 59.670 43.478 0.00 0.00 0.00 2.57
7467 9716 3.955471 TCCACCTCTCCATCACAAATTC 58.045 45.455 0.00 0.00 0.00 2.17
7468 9717 4.598036 ATCCACCTCTCCATCACAAATT 57.402 40.909 0.00 0.00 0.00 1.82
7469 9718 4.971282 TCTATCCACCTCTCCATCACAAAT 59.029 41.667 0.00 0.00 0.00 2.32
7470 9719 4.361783 TCTATCCACCTCTCCATCACAAA 58.638 43.478 0.00 0.00 0.00 2.83
7479 9728 5.559148 AAATGGTCATCTATCCACCTCTC 57.441 43.478 0.00 0.00 36.50 3.20
7485 9734 6.826668 ACGTATGAAAATGGTCATCTATCCA 58.173 36.000 0.00 0.00 39.07 3.41
7486 9735 7.155328 AGACGTATGAAAATGGTCATCTATCC 58.845 38.462 0.00 0.00 39.07 2.59
7489 9738 9.476202 CAATAGACGTATGAAAATGGTCATCTA 57.524 33.333 0.00 0.00 39.07 1.98
7611 10024 2.621526 CGGTGTTTATAGAAATGGGCCC 59.378 50.000 17.59 17.59 0.00 5.80
7612 10025 3.314357 GTCGGTGTTTATAGAAATGGGCC 59.686 47.826 0.00 0.00 0.00 5.80
7622 10035 2.988493 GTGTCGCTTGTCGGTGTTTATA 59.012 45.455 0.00 0.00 39.05 0.98
7630 10043 0.935831 TTGTACGTGTCGCTTGTCGG 60.936 55.000 0.00 0.00 39.05 4.79
7632 10045 2.343544 GGTATTGTACGTGTCGCTTGTC 59.656 50.000 0.00 0.00 0.00 3.18
7635 10048 2.602878 CAGGTATTGTACGTGTCGCTT 58.397 47.619 0.00 0.00 39.13 4.68
7636 10049 2.273370 CAGGTATTGTACGTGTCGCT 57.727 50.000 0.00 0.00 39.13 4.93
7642 10055 4.665212 CGACACATACAGGTATTGTACGT 58.335 43.478 0.00 0.00 44.68 3.57
7643 10056 3.484649 GCGACACATACAGGTATTGTACG 59.515 47.826 0.00 0.00 44.68 3.67
7644 10057 3.800506 GGCGACACATACAGGTATTGTAC 59.199 47.826 0.00 0.00 44.68 2.90
7645 10058 3.702548 AGGCGACACATACAGGTATTGTA 59.297 43.478 0.00 0.00 45.86 2.41
7652 10065 0.817654 TCTCAGGCGACACATACAGG 59.182 55.000 0.00 0.00 0.00 4.00
7653 10066 2.467838 CATCTCAGGCGACACATACAG 58.532 52.381 0.00 0.00 0.00 2.74
7661 10074 2.512515 GCACCCATCTCAGGCGAC 60.513 66.667 0.00 0.00 0.00 5.19
7676 10089 1.267121 GAAGGCGAGATATAGGGGCA 58.733 55.000 0.00 0.00 0.00 5.36
7720 10133 1.447643 CATCTCGATCGCCCCCTTT 59.552 57.895 11.09 0.00 0.00 3.11
7727 10140 2.049985 CCGGTCCATCTCGATCGC 60.050 66.667 11.09 0.00 34.99 4.58
7731 10144 4.770362 TGGGCCGGTCCATCTCGA 62.770 66.667 27.82 0.00 36.21 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.