Multiple sequence alignment - TraesCS5D01G042300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G042300 chr5D 100.000 2225 0 0 1 2225 42072299 42074523 0.000000e+00 4109.0
1 TraesCS5D01G042300 chr5D 97.500 480 11 1 2 481 481568505 481568983 0.000000e+00 819.0
2 TraesCS5D01G042300 chr5D 84.875 681 64 25 569 1230 41934385 41933725 0.000000e+00 651.0
3 TraesCS5D01G042300 chr5A 86.778 900 55 25 478 1373 30633887 30634726 0.000000e+00 944.0
4 TraesCS5D01G042300 chrUn 90.798 652 54 1 1580 2225 65790486 65789835 0.000000e+00 867.0
5 TraesCS5D01G042300 chrUn 97.083 480 14 0 2 481 374009236 374008757 0.000000e+00 809.0
6 TraesCS5D01G042300 chrUn 89.718 496 23 8 921 1407 65812885 65812409 1.890000e-170 608.0
7 TraesCS5D01G042300 chrUn 89.516 248 10 9 642 879 65813747 65813506 1.290000e-77 300.0
8 TraesCS5D01G042300 chrUn 93.333 90 4 2 1495 1583 65790610 65790522 4.990000e-27 132.0
9 TraesCS5D01G042300 chr2D 98.333 480 8 0 2 481 87566975 87566496 0.000000e+00 843.0
10 TraesCS5D01G042300 chr2D 97.500 480 11 1 2 481 22296005 22295527 0.000000e+00 819.0
11 TraesCS5D01G042300 chr3D 97.917 480 10 0 2 481 397536174 397535695 0.000000e+00 832.0
12 TraesCS5D01G042300 chr4D 97.917 480 9 1 2 481 302699542 302699064 0.000000e+00 830.0
13 TraesCS5D01G042300 chr7D 97.500 480 11 1 2 481 607930765 607931243 0.000000e+00 819.0
14 TraesCS5D01G042300 chr7D 97.500 480 11 1 2 481 629253417 629253895 0.000000e+00 819.0
15 TraesCS5D01G042300 chr7D 86.747 83 8 3 1477 1557 450120844 450120925 3.040000e-14 89.8
16 TraesCS5D01G042300 chr6D 97.500 480 11 1 2 481 37227408 37226930 0.000000e+00 819.0
17 TraesCS5D01G042300 chr6D 79.020 653 132 5 1575 2225 8967857 8968506 2.030000e-120 442.0
18 TraesCS5D01G042300 chr6B 84.509 652 99 2 1575 2225 90939616 90940266 0.000000e+00 643.0
19 TraesCS5D01G042300 chr6B 81.991 633 110 4 1581 2211 53062226 53061596 3.250000e-148 534.0
20 TraesCS5D01G042300 chr6B 81.064 639 107 14 1582 2213 16433428 16434059 4.270000e-137 497.0
21 TraesCS5D01G042300 chr6B 80.124 644 122 6 1585 2225 52980763 52980123 2.000000e-130 475.0
22 TraesCS5D01G042300 chr6B 80.952 483 82 8 1742 2219 15219297 15218820 7.500000e-100 374.0
23 TraesCS5D01G042300 chr6B 74.159 654 151 16 1581 2225 65174848 65174204 2.840000e-64 255.0
24 TraesCS5D01G042300 chr2B 78.858 648 131 6 1581 2225 709425890 709425246 1.220000e-117 433.0
25 TraesCS5D01G042300 chr2B 87.193 367 47 0 1859 2225 709321362 709320996 3.420000e-113 418.0
26 TraesCS5D01G042300 chr2B 76.054 664 133 18 1575 2225 89500229 89500879 2.760000e-84 322.0
27 TraesCS5D01G042300 chr5B 94.821 251 13 0 980 1230 36602541 36602291 2.070000e-105 392.0
28 TraesCS5D01G042300 chr5B 79.032 372 33 20 569 925 36602895 36602554 1.730000e-51 213.0
29 TraesCS5D01G042300 chr6A 74.498 647 153 12 1581 2221 35581317 35580677 1.010000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G042300 chr5D 42072299 42074523 2224 False 4109.0 4109 100.0000 1 2225 1 chr5D.!!$F1 2224
1 TraesCS5D01G042300 chr5D 41933725 41934385 660 True 651.0 651 84.8750 569 1230 1 chr5D.!!$R1 661
2 TraesCS5D01G042300 chr5A 30633887 30634726 839 False 944.0 944 86.7780 478 1373 1 chr5A.!!$F1 895
3 TraesCS5D01G042300 chrUn 65789835 65790610 775 True 499.5 867 92.0655 1495 2225 2 chrUn.!!$R2 730
4 TraesCS5D01G042300 chrUn 65812409 65813747 1338 True 454.0 608 89.6170 642 1407 2 chrUn.!!$R3 765
5 TraesCS5D01G042300 chr6D 8967857 8968506 649 False 442.0 442 79.0200 1575 2225 1 chr6D.!!$F1 650
6 TraesCS5D01G042300 chr6B 90939616 90940266 650 False 643.0 643 84.5090 1575 2225 1 chr6B.!!$F2 650
7 TraesCS5D01G042300 chr6B 53061596 53062226 630 True 534.0 534 81.9910 1581 2211 1 chr6B.!!$R3 630
8 TraesCS5D01G042300 chr6B 16433428 16434059 631 False 497.0 497 81.0640 1582 2213 1 chr6B.!!$F1 631
9 TraesCS5D01G042300 chr6B 52980123 52980763 640 True 475.0 475 80.1240 1585 2225 1 chr6B.!!$R2 640
10 TraesCS5D01G042300 chr6B 65174204 65174848 644 True 255.0 255 74.1590 1581 2225 1 chr6B.!!$R4 644
11 TraesCS5D01G042300 chr2B 709425246 709425890 644 True 433.0 433 78.8580 1581 2225 1 chr2B.!!$R2 644
12 TraesCS5D01G042300 chr2B 89500229 89500879 650 False 322.0 322 76.0540 1575 2225 1 chr2B.!!$F1 650
13 TraesCS5D01G042300 chr5B 36602291 36602895 604 True 302.5 392 86.9265 569 1230 2 chr5B.!!$R1 661
14 TraesCS5D01G042300 chr6A 35580677 35581317 640 True 270.0 270 74.4980 1581 2221 1 chr6A.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 368 0.035458 AGCACAGCACTCTTGTACCC 59.965 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2893 0.041839 CGATGAGCAATGTAAGCCGC 60.042 55.0 0.0 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.995669 CGACGCGTGTTGGTGGTG 61.996 66.667 20.70 0.00 0.00 4.17
21 22 4.307908 GACGCGTGTTGGTGGTGC 62.308 66.667 20.70 0.00 0.00 5.01
22 23 4.849310 ACGCGTGTTGGTGGTGCT 62.849 61.111 12.93 0.00 0.00 4.40
23 24 4.012895 CGCGTGTTGGTGGTGCTC 62.013 66.667 0.00 0.00 0.00 4.26
24 25 2.591715 GCGTGTTGGTGGTGCTCT 60.592 61.111 0.00 0.00 0.00 4.09
25 26 2.896801 GCGTGTTGGTGGTGCTCTG 61.897 63.158 0.00 0.00 0.00 3.35
26 27 2.253758 CGTGTTGGTGGTGCTCTGG 61.254 63.158 0.00 0.00 0.00 3.86
27 28 1.152963 GTGTTGGTGGTGCTCTGGT 60.153 57.895 0.00 0.00 0.00 4.00
28 29 0.107831 GTGTTGGTGGTGCTCTGGTA 59.892 55.000 0.00 0.00 0.00 3.25
29 30 1.064003 TGTTGGTGGTGCTCTGGTAT 58.936 50.000 0.00 0.00 0.00 2.73
30 31 1.271325 TGTTGGTGGTGCTCTGGTATG 60.271 52.381 0.00 0.00 0.00 2.39
31 32 0.327924 TTGGTGGTGCTCTGGTATGG 59.672 55.000 0.00 0.00 0.00 2.74
32 33 1.452108 GGTGGTGCTCTGGTATGGC 60.452 63.158 0.00 0.00 0.00 4.40
33 34 1.299648 GTGGTGCTCTGGTATGGCA 59.700 57.895 0.00 0.00 0.00 4.92
34 35 0.107017 GTGGTGCTCTGGTATGGCAT 60.107 55.000 4.88 4.88 38.27 4.40
35 36 0.625316 TGGTGCTCTGGTATGGCATT 59.375 50.000 4.78 0.00 38.27 3.56
36 37 1.005805 TGGTGCTCTGGTATGGCATTT 59.994 47.619 4.78 0.00 38.27 2.32
37 38 1.678101 GGTGCTCTGGTATGGCATTTC 59.322 52.381 4.78 0.00 38.27 2.17
38 39 1.331756 GTGCTCTGGTATGGCATTTCG 59.668 52.381 4.78 0.00 38.27 3.46
39 40 1.065491 TGCTCTGGTATGGCATTTCGT 60.065 47.619 4.78 0.00 0.00 3.85
40 41 1.331756 GCTCTGGTATGGCATTTCGTG 59.668 52.381 4.78 0.00 0.00 4.35
41 42 2.632377 CTCTGGTATGGCATTTCGTGT 58.368 47.619 4.78 0.00 0.00 4.49
42 43 2.352651 CTCTGGTATGGCATTTCGTGTG 59.647 50.000 4.78 0.00 0.00 3.82
43 44 1.401552 CTGGTATGGCATTTCGTGTGG 59.598 52.381 4.78 0.00 0.00 4.17
44 45 0.100503 GGTATGGCATTTCGTGTGGC 59.899 55.000 4.78 4.59 41.99 5.01
45 46 0.100503 GTATGGCATTTCGTGTGGCC 59.899 55.000 4.78 0.00 46.58 5.36
47 48 3.287445 GGCATTTCGTGTGGCCAT 58.713 55.556 9.72 0.00 45.70 4.40
48 49 1.153784 GGCATTTCGTGTGGCCATG 60.154 57.895 9.72 1.35 45.70 3.66
49 50 1.153784 GCATTTCGTGTGGCCATGG 60.154 57.895 9.72 7.63 0.00 3.66
50 51 1.153784 CATTTCGTGTGGCCATGGC 60.154 57.895 29.47 29.47 41.06 4.40
51 52 2.699768 ATTTCGTGTGGCCATGGCG 61.700 57.895 29.90 16.10 43.06 5.69
52 53 4.634703 TTCGTGTGGCCATGGCGT 62.635 61.111 29.90 0.00 43.06 5.68
60 61 4.460683 GCCATGGCGTCGGGTGTA 62.461 66.667 23.48 0.00 0.00 2.90
61 62 2.510691 CCATGGCGTCGGGTGTAC 60.511 66.667 0.00 0.00 0.00 2.90
62 63 2.263227 CATGGCGTCGGGTGTACA 59.737 61.111 0.00 0.00 0.00 2.90
63 64 2.098233 CATGGCGTCGGGTGTACAC 61.098 63.158 18.01 18.01 0.00 2.90
76 77 1.880027 GTGTACACCTTTGCTCTTGGG 59.120 52.381 15.42 0.00 0.00 4.12
77 78 1.771854 TGTACACCTTTGCTCTTGGGA 59.228 47.619 0.00 0.00 0.00 4.37
78 79 2.224523 TGTACACCTTTGCTCTTGGGAG 60.225 50.000 0.00 0.00 42.18 4.30
79 80 1.140312 ACACCTTTGCTCTTGGGAGA 58.860 50.000 0.00 0.00 41.86 3.71
95 96 1.429825 AGAGCGTTCTCATCGTCCG 59.570 57.895 0.00 0.00 41.81 4.79
96 97 1.025113 AGAGCGTTCTCATCGTCCGA 61.025 55.000 0.00 0.00 41.81 4.55
97 98 0.862283 GAGCGTTCTCATCGTCCGAC 60.862 60.000 0.00 0.00 39.16 4.79
98 99 2.215604 GCGTTCTCATCGTCCGACG 61.216 63.158 14.94 14.94 44.19 5.12
99 100 1.582937 CGTTCTCATCGTCCGACGG 60.583 63.158 20.35 7.84 42.81 4.79
100 101 1.798735 GTTCTCATCGTCCGACGGA 59.201 57.895 20.35 13.88 42.81 4.69
101 102 0.381089 GTTCTCATCGTCCGACGGAT 59.619 55.000 21.53 0.21 42.81 4.18
102 103 0.661552 TTCTCATCGTCCGACGGATC 59.338 55.000 21.53 12.65 42.81 3.36
146 147 2.687566 GGGAGCCCCTTTCGGAGA 60.688 66.667 3.16 0.00 41.34 3.71
147 148 2.073101 GGGAGCCCCTTTCGGAGAT 61.073 63.158 3.16 0.00 41.34 2.75
148 149 1.147153 GGAGCCCCTTTCGGAGATG 59.853 63.158 0.00 0.00 35.04 2.90
149 150 1.627297 GGAGCCCCTTTCGGAGATGT 61.627 60.000 0.00 0.00 35.04 3.06
150 151 1.120530 GAGCCCCTTTCGGAGATGTA 58.879 55.000 0.00 0.00 35.04 2.29
151 152 1.069358 GAGCCCCTTTCGGAGATGTAG 59.931 57.143 0.00 0.00 35.04 2.74
152 153 0.106894 GCCCCTTTCGGAGATGTAGG 59.893 60.000 0.00 0.00 35.04 3.18
153 154 1.789523 CCCCTTTCGGAGATGTAGGA 58.210 55.000 0.00 0.00 35.04 2.94
154 155 1.689273 CCCCTTTCGGAGATGTAGGAG 59.311 57.143 0.00 0.00 35.04 3.69
155 156 1.689273 CCCTTTCGGAGATGTAGGAGG 59.311 57.143 0.00 0.00 35.04 4.30
156 157 2.389715 CCTTTCGGAGATGTAGGAGGT 58.610 52.381 0.00 0.00 35.04 3.85
157 158 2.766828 CCTTTCGGAGATGTAGGAGGTT 59.233 50.000 0.00 0.00 35.04 3.50
158 159 3.430929 CCTTTCGGAGATGTAGGAGGTTG 60.431 52.174 0.00 0.00 35.04 3.77
159 160 2.526888 TCGGAGATGTAGGAGGTTGT 57.473 50.000 0.00 0.00 0.00 3.32
160 161 2.376109 TCGGAGATGTAGGAGGTTGTC 58.624 52.381 0.00 0.00 0.00 3.18
161 162 1.065701 CGGAGATGTAGGAGGTTGTCG 59.934 57.143 0.00 0.00 0.00 4.35
162 163 1.202428 GGAGATGTAGGAGGTTGTCGC 60.202 57.143 0.00 0.00 0.00 5.19
163 164 0.824759 AGATGTAGGAGGTTGTCGCC 59.175 55.000 0.00 0.00 35.38 5.54
164 165 0.527817 GATGTAGGAGGTTGTCGCCG 60.528 60.000 0.00 0.00 40.51 6.46
165 166 0.968901 ATGTAGGAGGTTGTCGCCGA 60.969 55.000 0.00 0.00 40.51 5.54
166 167 0.968901 TGTAGGAGGTTGTCGCCGAT 60.969 55.000 0.00 0.00 40.51 4.18
167 168 0.175073 GTAGGAGGTTGTCGCCGATT 59.825 55.000 0.00 0.00 40.51 3.34
168 169 0.458669 TAGGAGGTTGTCGCCGATTC 59.541 55.000 0.00 0.00 40.51 2.52
169 170 2.165301 GGAGGTTGTCGCCGATTCG 61.165 63.158 0.00 0.00 0.00 3.34
188 189 4.559063 CCGGAGCCCATGGAGCTG 62.559 72.222 26.43 15.61 41.75 4.24
190 191 4.891037 GGAGCCCATGGAGCTGCC 62.891 72.222 26.43 21.83 42.32 4.85
198 199 2.265739 TGGAGCTGCCATCGTCAC 59.734 61.111 1.53 0.00 43.33 3.67
199 200 2.285773 TGGAGCTGCCATCGTCACT 61.286 57.895 1.53 0.00 43.33 3.41
200 201 1.520342 GGAGCTGCCATCGTCACTC 60.520 63.158 0.00 0.00 36.34 3.51
201 202 1.520342 GAGCTGCCATCGTCACTCC 60.520 63.158 0.00 0.00 0.00 3.85
202 203 2.512515 GCTGCCATCGTCACTCCC 60.513 66.667 0.00 0.00 0.00 4.30
203 204 2.202797 CTGCCATCGTCACTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
204 205 4.451150 TGCCATCGTCACTCCCGC 62.451 66.667 0.00 0.00 0.00 6.13
205 206 4.148825 GCCATCGTCACTCCCGCT 62.149 66.667 0.00 0.00 0.00 5.52
206 207 2.579201 CCATCGTCACTCCCGCTT 59.421 61.111 0.00 0.00 0.00 4.68
207 208 1.811266 CCATCGTCACTCCCGCTTG 60.811 63.158 0.00 0.00 0.00 4.01
208 209 2.125512 ATCGTCACTCCCGCTTGC 60.126 61.111 0.00 0.00 0.00 4.01
209 210 2.650116 ATCGTCACTCCCGCTTGCT 61.650 57.895 0.00 0.00 0.00 3.91
210 211 1.320344 ATCGTCACTCCCGCTTGCTA 61.320 55.000 0.00 0.00 0.00 3.49
211 212 1.517257 CGTCACTCCCGCTTGCTAG 60.517 63.158 0.00 0.00 0.00 3.42
212 213 1.811679 GTCACTCCCGCTTGCTAGC 60.812 63.158 8.10 8.10 44.21 3.42
213 214 1.984570 TCACTCCCGCTTGCTAGCT 60.985 57.895 17.23 0.00 45.51 3.32
214 215 1.812922 CACTCCCGCTTGCTAGCTG 60.813 63.158 17.23 11.36 45.51 4.24
217 218 4.101448 CCCGCTTGCTAGCTGGGT 62.101 66.667 28.17 0.00 46.80 4.51
218 219 2.512515 CCGCTTGCTAGCTGGGTC 60.513 66.667 17.23 0.00 45.51 4.46
219 220 2.581354 CGCTTGCTAGCTGGGTCT 59.419 61.111 17.23 0.00 45.51 3.85
220 221 1.520342 CGCTTGCTAGCTGGGTCTC 60.520 63.158 17.23 0.00 45.51 3.36
221 222 1.153269 GCTTGCTAGCTGGGTCTCC 60.153 63.158 17.23 0.00 44.27 3.71
222 223 1.621672 GCTTGCTAGCTGGGTCTCCT 61.622 60.000 17.23 0.00 44.27 3.69
223 224 0.463620 CTTGCTAGCTGGGTCTCCTC 59.536 60.000 17.23 0.00 0.00 3.71
224 225 0.252239 TTGCTAGCTGGGTCTCCTCA 60.252 55.000 17.23 0.00 0.00 3.86
225 226 0.252239 TGCTAGCTGGGTCTCCTCAA 60.252 55.000 17.23 0.00 0.00 3.02
226 227 0.463620 GCTAGCTGGGTCTCCTCAAG 59.536 60.000 7.70 0.00 0.00 3.02
227 228 1.118838 CTAGCTGGGTCTCCTCAAGG 58.881 60.000 0.00 0.00 0.00 3.61
228 229 0.413832 TAGCTGGGTCTCCTCAAGGT 59.586 55.000 0.00 0.00 36.34 3.50
229 230 0.907230 AGCTGGGTCTCCTCAAGGTC 60.907 60.000 0.00 0.00 36.34 3.85
230 231 1.194781 GCTGGGTCTCCTCAAGGTCA 61.195 60.000 0.00 0.00 36.34 4.02
231 232 0.901124 CTGGGTCTCCTCAAGGTCAG 59.099 60.000 0.00 0.00 36.34 3.51
232 233 0.487325 TGGGTCTCCTCAAGGTCAGA 59.513 55.000 0.00 0.00 36.34 3.27
233 234 1.079490 TGGGTCTCCTCAAGGTCAGAT 59.921 52.381 0.00 0.00 36.34 2.90
234 235 1.484240 GGGTCTCCTCAAGGTCAGATG 59.516 57.143 0.00 0.00 36.34 2.90
235 236 1.484240 GGTCTCCTCAAGGTCAGATGG 59.516 57.143 0.00 0.00 36.34 3.51
236 237 2.183679 GTCTCCTCAAGGTCAGATGGT 58.816 52.381 0.00 0.00 36.34 3.55
237 238 2.093764 GTCTCCTCAAGGTCAGATGGTG 60.094 54.545 0.00 0.00 36.34 4.17
238 239 1.905215 CTCCTCAAGGTCAGATGGTGT 59.095 52.381 0.00 0.00 36.34 4.16
239 240 1.902508 TCCTCAAGGTCAGATGGTGTC 59.097 52.381 0.00 0.00 36.34 3.67
240 241 1.905215 CCTCAAGGTCAGATGGTGTCT 59.095 52.381 0.00 0.00 37.80 3.41
241 242 2.093764 CCTCAAGGTCAGATGGTGTCTC 60.094 54.545 0.00 0.00 34.00 3.36
242 243 1.546029 TCAAGGTCAGATGGTGTCTCG 59.454 52.381 0.00 0.00 34.00 4.04
243 244 0.898320 AAGGTCAGATGGTGTCTCGG 59.102 55.000 0.00 0.00 34.00 4.63
244 245 0.251832 AGGTCAGATGGTGTCTCGGT 60.252 55.000 0.00 0.00 34.00 4.69
245 246 0.108615 GGTCAGATGGTGTCTCGGTG 60.109 60.000 0.00 0.00 34.00 4.94
246 247 0.108615 GTCAGATGGTGTCTCGGTGG 60.109 60.000 0.00 0.00 34.00 4.61
247 248 1.219124 CAGATGGTGTCTCGGTGGG 59.781 63.158 0.00 0.00 34.00 4.61
248 249 1.990060 AGATGGTGTCTCGGTGGGG 60.990 63.158 0.00 0.00 28.45 4.96
249 250 2.203938 ATGGTGTCTCGGTGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
250 251 2.521958 GATGGTGTCTCGGTGGGGTG 62.522 65.000 0.00 0.00 0.00 4.61
251 252 4.016706 GGTGTCTCGGTGGGGTGG 62.017 72.222 0.00 0.00 0.00 4.61
252 253 2.920912 GTGTCTCGGTGGGGTGGA 60.921 66.667 0.00 0.00 0.00 4.02
253 254 2.121832 TGTCTCGGTGGGGTGGAT 59.878 61.111 0.00 0.00 0.00 3.41
254 255 1.987855 TGTCTCGGTGGGGTGGATC 60.988 63.158 0.00 0.00 0.00 3.36
255 256 2.758327 TCTCGGTGGGGTGGATCG 60.758 66.667 0.00 0.00 0.00 3.69
256 257 4.530857 CTCGGTGGGGTGGATCGC 62.531 72.222 0.00 0.00 0.00 4.58
259 260 3.717294 GGTGGGGTGGATCGCACT 61.717 66.667 12.27 0.00 45.90 4.40
260 261 2.125106 GTGGGGTGGATCGCACTC 60.125 66.667 12.27 9.22 44.10 3.51
261 262 3.770040 TGGGGTGGATCGCACTCG 61.770 66.667 12.27 0.00 0.00 4.18
262 263 4.530857 GGGGTGGATCGCACTCGG 62.531 72.222 12.27 0.00 36.13 4.63
263 264 3.771160 GGGTGGATCGCACTCGGT 61.771 66.667 12.27 0.00 36.13 4.69
264 265 2.509336 GGTGGATCGCACTCGGTG 60.509 66.667 12.27 0.25 36.51 4.94
265 266 2.509336 GTGGATCGCACTCGGTGG 60.509 66.667 6.98 0.00 33.64 4.61
266 267 2.678580 TGGATCGCACTCGGTGGA 60.679 61.111 6.23 3.06 33.64 4.02
267 268 2.105128 GGATCGCACTCGGTGGAG 59.895 66.667 6.23 0.00 46.13 3.86
268 269 2.105128 GATCGCACTCGGTGGAGG 59.895 66.667 6.23 0.00 44.93 4.30
269 270 3.432051 GATCGCACTCGGTGGAGGG 62.432 68.421 6.23 0.00 46.96 4.30
273 274 2.266055 CACTCGGTGGAGGGCTTC 59.734 66.667 0.00 0.00 44.93 3.86
274 275 2.203788 ACTCGGTGGAGGGCTTCA 60.204 61.111 0.00 0.00 44.93 3.02
275 276 1.841556 ACTCGGTGGAGGGCTTCAA 60.842 57.895 0.00 0.00 44.93 2.69
276 277 1.376037 CTCGGTGGAGGGCTTCAAC 60.376 63.158 0.00 0.00 36.61 3.18
277 278 2.111999 CTCGGTGGAGGGCTTCAACA 62.112 60.000 6.47 0.00 36.61 3.33
278 279 1.002134 CGGTGGAGGGCTTCAACAT 60.002 57.895 6.47 0.00 30.67 2.71
279 280 1.026718 CGGTGGAGGGCTTCAACATC 61.027 60.000 6.47 0.00 30.67 3.06
280 281 0.329596 GGTGGAGGGCTTCAACATCT 59.670 55.000 6.47 0.00 30.67 2.90
281 282 1.680249 GGTGGAGGGCTTCAACATCTC 60.680 57.143 6.47 0.00 30.67 2.75
282 283 0.620556 TGGAGGGCTTCAACATCTCC 59.379 55.000 0.00 0.00 43.06 3.71
283 284 0.620556 GGAGGGCTTCAACATCTCCA 59.379 55.000 0.00 0.00 42.49 3.86
284 285 1.004745 GGAGGGCTTCAACATCTCCAA 59.995 52.381 0.00 0.00 42.49 3.53
285 286 2.363683 GAGGGCTTCAACATCTCCAAG 58.636 52.381 0.00 0.00 0.00 3.61
286 287 0.813821 GGGCTTCAACATCTCCAAGC 59.186 55.000 0.00 0.00 40.52 4.01
287 288 1.615384 GGGCTTCAACATCTCCAAGCT 60.615 52.381 2.78 0.00 40.95 3.74
288 289 1.471684 GGCTTCAACATCTCCAAGCTG 59.528 52.381 2.78 0.00 40.95 4.24
289 290 1.471684 GCTTCAACATCTCCAAGCTGG 59.528 52.381 0.00 0.00 38.58 4.85
290 291 2.787994 CTTCAACATCTCCAAGCTGGT 58.212 47.619 0.00 0.00 39.03 4.00
291 292 2.479566 TCAACATCTCCAAGCTGGTC 57.520 50.000 0.00 0.00 39.03 4.02
292 293 1.980765 TCAACATCTCCAAGCTGGTCT 59.019 47.619 0.00 0.00 39.03 3.85
293 294 2.373169 TCAACATCTCCAAGCTGGTCTT 59.627 45.455 0.00 0.00 39.03 3.01
305 306 6.566197 CAAGCTGGTCTTGTTCTTTAGATT 57.434 37.500 0.00 0.00 45.48 2.40
306 307 6.606768 CAAGCTGGTCTTGTTCTTTAGATTC 58.393 40.000 0.00 0.00 45.48 2.52
307 308 6.120507 AGCTGGTCTTGTTCTTTAGATTCT 57.879 37.500 0.00 0.00 0.00 2.40
308 309 5.936956 AGCTGGTCTTGTTCTTTAGATTCTG 59.063 40.000 0.00 0.00 0.00 3.02
309 310 5.391416 GCTGGTCTTGTTCTTTAGATTCTGC 60.391 44.000 0.00 0.00 0.00 4.26
310 311 5.620206 TGGTCTTGTTCTTTAGATTCTGCA 58.380 37.500 0.00 0.00 0.00 4.41
311 312 6.240894 TGGTCTTGTTCTTTAGATTCTGCAT 58.759 36.000 0.00 0.00 0.00 3.96
312 313 6.372659 TGGTCTTGTTCTTTAGATTCTGCATC 59.627 38.462 0.00 0.00 0.00 3.91
313 314 6.597280 GGTCTTGTTCTTTAGATTCTGCATCT 59.403 38.462 0.00 0.00 45.08 2.90
314 315 7.120432 GGTCTTGTTCTTTAGATTCTGCATCTT 59.880 37.037 0.00 0.00 39.47 2.40
315 316 8.510505 GTCTTGTTCTTTAGATTCTGCATCTTT 58.489 33.333 0.00 0.00 39.47 2.52
316 317 8.509690 TCTTGTTCTTTAGATTCTGCATCTTTG 58.490 33.333 0.00 0.00 39.47 2.77
330 331 5.415415 GCATCTTTGCTTGTAGATGGTAG 57.585 43.478 12.47 0.00 45.01 3.18
331 332 4.274459 GCATCTTTGCTTGTAGATGGTAGG 59.726 45.833 12.47 0.00 45.01 3.18
332 333 5.674525 CATCTTTGCTTGTAGATGGTAGGA 58.325 41.667 0.00 0.00 42.50 2.94
333 334 5.755409 TCTTTGCTTGTAGATGGTAGGAA 57.245 39.130 0.00 0.00 0.00 3.36
334 335 5.734720 TCTTTGCTTGTAGATGGTAGGAAG 58.265 41.667 0.00 0.00 0.00 3.46
335 336 3.543680 TGCTTGTAGATGGTAGGAAGC 57.456 47.619 0.00 0.00 37.04 3.86
336 337 2.170607 TGCTTGTAGATGGTAGGAAGCC 59.829 50.000 0.00 0.00 35.92 4.35
337 338 2.436173 GCTTGTAGATGGTAGGAAGCCT 59.564 50.000 0.00 0.00 37.71 4.58
338 339 3.118223 GCTTGTAGATGGTAGGAAGCCTT 60.118 47.826 0.00 0.00 34.61 4.35
339 340 4.626529 GCTTGTAGATGGTAGGAAGCCTTT 60.627 45.833 0.00 0.00 34.61 3.11
340 341 5.501156 CTTGTAGATGGTAGGAAGCCTTTT 58.499 41.667 0.00 0.00 34.61 2.27
341 342 6.630203 TTGTAGATGGTAGGAAGCCTTTTA 57.370 37.500 0.00 0.00 34.61 1.52
342 343 6.235231 TGTAGATGGTAGGAAGCCTTTTAG 57.765 41.667 0.00 0.00 34.61 1.85
343 344 5.724854 TGTAGATGGTAGGAAGCCTTTTAGT 59.275 40.000 0.00 0.00 34.61 2.24
344 345 5.780958 AGATGGTAGGAAGCCTTTTAGTT 57.219 39.130 0.00 0.00 34.61 2.24
345 346 5.501156 AGATGGTAGGAAGCCTTTTAGTTG 58.499 41.667 0.00 0.00 34.61 3.16
346 347 4.717279 TGGTAGGAAGCCTTTTAGTTGT 57.283 40.909 0.00 0.00 34.61 3.32
347 348 5.056553 TGGTAGGAAGCCTTTTAGTTGTT 57.943 39.130 0.00 0.00 34.61 2.83
348 349 6.190346 TGGTAGGAAGCCTTTTAGTTGTTA 57.810 37.500 0.00 0.00 34.61 2.41
349 350 6.235664 TGGTAGGAAGCCTTTTAGTTGTTAG 58.764 40.000 0.00 0.00 34.61 2.34
350 351 5.123502 GGTAGGAAGCCTTTTAGTTGTTAGC 59.876 44.000 0.00 0.00 34.61 3.09
351 352 4.725490 AGGAAGCCTTTTAGTTGTTAGCA 58.275 39.130 0.00 0.00 0.00 3.49
352 353 4.519350 AGGAAGCCTTTTAGTTGTTAGCAC 59.481 41.667 0.00 0.00 0.00 4.40
353 354 4.277423 GGAAGCCTTTTAGTTGTTAGCACA 59.723 41.667 0.00 0.00 0.00 4.57
354 355 5.438761 AAGCCTTTTAGTTGTTAGCACAG 57.561 39.130 0.00 0.00 33.22 3.66
355 356 3.253432 AGCCTTTTAGTTGTTAGCACAGC 59.747 43.478 0.00 0.00 33.22 4.40
356 357 3.004315 GCCTTTTAGTTGTTAGCACAGCA 59.996 43.478 0.00 0.00 36.61 4.41
357 358 4.537015 CCTTTTAGTTGTTAGCACAGCAC 58.463 43.478 0.00 0.00 36.61 4.40
358 359 4.275936 CCTTTTAGTTGTTAGCACAGCACT 59.724 41.667 0.00 0.00 36.61 4.40
359 360 5.418310 TTTTAGTTGTTAGCACAGCACTC 57.582 39.130 0.00 0.00 36.61 3.51
360 361 2.918712 AGTTGTTAGCACAGCACTCT 57.081 45.000 0.00 0.00 36.61 3.24
361 362 3.199880 AGTTGTTAGCACAGCACTCTT 57.800 42.857 0.00 0.00 36.61 2.85
362 363 2.874701 AGTTGTTAGCACAGCACTCTTG 59.125 45.455 0.00 0.00 36.61 3.02
363 364 2.614057 GTTGTTAGCACAGCACTCTTGT 59.386 45.455 0.00 0.00 34.36 3.16
364 365 3.744238 TGTTAGCACAGCACTCTTGTA 57.256 42.857 0.00 0.00 0.00 2.41
365 366 3.390135 TGTTAGCACAGCACTCTTGTAC 58.610 45.455 0.00 0.00 0.00 2.90
366 367 2.737252 GTTAGCACAGCACTCTTGTACC 59.263 50.000 0.00 0.00 0.00 3.34
367 368 0.035458 AGCACAGCACTCTTGTACCC 59.965 55.000 0.00 0.00 0.00 3.69
368 369 0.035458 GCACAGCACTCTTGTACCCT 59.965 55.000 0.00 0.00 0.00 4.34
369 370 1.543429 GCACAGCACTCTTGTACCCTT 60.543 52.381 0.00 0.00 0.00 3.95
370 371 2.851195 CACAGCACTCTTGTACCCTTT 58.149 47.619 0.00 0.00 0.00 3.11
371 372 3.214328 CACAGCACTCTTGTACCCTTTT 58.786 45.455 0.00 0.00 0.00 2.27
372 373 4.385825 CACAGCACTCTTGTACCCTTTTA 58.614 43.478 0.00 0.00 0.00 1.52
373 374 4.452455 CACAGCACTCTTGTACCCTTTTAG 59.548 45.833 0.00 0.00 0.00 1.85
374 375 3.437049 CAGCACTCTTGTACCCTTTTAGC 59.563 47.826 0.00 0.00 0.00 3.09
375 376 3.328050 AGCACTCTTGTACCCTTTTAGCT 59.672 43.478 0.00 0.00 0.00 3.32
376 377 3.437049 GCACTCTTGTACCCTTTTAGCTG 59.563 47.826 0.00 0.00 0.00 4.24
377 378 4.642429 CACTCTTGTACCCTTTTAGCTGT 58.358 43.478 0.00 0.00 0.00 4.40
378 379 5.063880 CACTCTTGTACCCTTTTAGCTGTT 58.936 41.667 0.00 0.00 0.00 3.16
379 380 5.531287 CACTCTTGTACCCTTTTAGCTGTTT 59.469 40.000 0.00 0.00 0.00 2.83
380 381 6.039382 CACTCTTGTACCCTTTTAGCTGTTTT 59.961 38.462 0.00 0.00 0.00 2.43
381 382 6.262496 ACTCTTGTACCCTTTTAGCTGTTTTC 59.738 38.462 0.00 0.00 0.00 2.29
382 383 6.362248 TCTTGTACCCTTTTAGCTGTTTTCT 58.638 36.000 0.00 0.00 0.00 2.52
383 384 6.262273 TCTTGTACCCTTTTAGCTGTTTTCTG 59.738 38.462 0.00 0.00 0.00 3.02
384 385 5.442391 TGTACCCTTTTAGCTGTTTTCTGT 58.558 37.500 0.00 0.00 0.00 3.41
385 386 4.918810 ACCCTTTTAGCTGTTTTCTGTG 57.081 40.909 0.00 0.00 0.00 3.66
386 387 4.278310 ACCCTTTTAGCTGTTTTCTGTGT 58.722 39.130 0.00 0.00 0.00 3.72
387 388 4.709886 ACCCTTTTAGCTGTTTTCTGTGTT 59.290 37.500 0.00 0.00 0.00 3.32
388 389 5.163550 ACCCTTTTAGCTGTTTTCTGTGTTC 60.164 40.000 0.00 0.00 0.00 3.18
389 390 4.970003 CCTTTTAGCTGTTTTCTGTGTTCG 59.030 41.667 0.00 0.00 0.00 3.95
390 391 5.448632 CCTTTTAGCTGTTTTCTGTGTTCGT 60.449 40.000 0.00 0.00 0.00 3.85
391 392 4.789095 TTAGCTGTTTTCTGTGTTCGTC 57.211 40.909 0.00 0.00 0.00 4.20
392 393 2.906354 AGCTGTTTTCTGTGTTCGTCT 58.094 42.857 0.00 0.00 0.00 4.18
393 394 2.866762 AGCTGTTTTCTGTGTTCGTCTC 59.133 45.455 0.00 0.00 0.00 3.36
394 395 2.866762 GCTGTTTTCTGTGTTCGTCTCT 59.133 45.455 0.00 0.00 0.00 3.10
395 396 3.302740 GCTGTTTTCTGTGTTCGTCTCTG 60.303 47.826 0.00 0.00 0.00 3.35
396 397 3.857052 TGTTTTCTGTGTTCGTCTCTGT 58.143 40.909 0.00 0.00 0.00 3.41
397 398 5.001237 TGTTTTCTGTGTTCGTCTCTGTA 57.999 39.130 0.00 0.00 0.00 2.74
398 399 4.802039 TGTTTTCTGTGTTCGTCTCTGTAC 59.198 41.667 0.00 0.00 0.00 2.90
399 400 4.913335 TTTCTGTGTTCGTCTCTGTACT 57.087 40.909 0.00 0.00 0.00 2.73
400 401 4.913335 TTCTGTGTTCGTCTCTGTACTT 57.087 40.909 0.00 0.00 0.00 2.24
401 402 4.224715 TCTGTGTTCGTCTCTGTACTTG 57.775 45.455 0.00 0.00 0.00 3.16
402 403 3.004419 TCTGTGTTCGTCTCTGTACTTGG 59.996 47.826 0.00 0.00 0.00 3.61
403 404 2.691526 TGTGTTCGTCTCTGTACTTGGT 59.308 45.455 0.00 0.00 0.00 3.67
404 405 3.050619 GTGTTCGTCTCTGTACTTGGTG 58.949 50.000 0.00 0.00 0.00 4.17
405 406 2.059541 GTTCGTCTCTGTACTTGGTGC 58.940 52.381 0.00 0.00 0.00 5.01
406 407 1.617322 TCGTCTCTGTACTTGGTGCT 58.383 50.000 0.00 0.00 0.00 4.40
407 408 1.961394 TCGTCTCTGTACTTGGTGCTT 59.039 47.619 0.00 0.00 0.00 3.91
408 409 3.151554 TCGTCTCTGTACTTGGTGCTTA 58.848 45.455 0.00 0.00 0.00 3.09
409 410 3.762288 TCGTCTCTGTACTTGGTGCTTAT 59.238 43.478 0.00 0.00 0.00 1.73
410 411 4.219944 TCGTCTCTGTACTTGGTGCTTATT 59.780 41.667 0.00 0.00 0.00 1.40
411 412 4.327357 CGTCTCTGTACTTGGTGCTTATTG 59.673 45.833 0.00 0.00 0.00 1.90
412 413 5.238583 GTCTCTGTACTTGGTGCTTATTGT 58.761 41.667 0.00 0.00 0.00 2.71
413 414 6.395629 GTCTCTGTACTTGGTGCTTATTGTA 58.604 40.000 0.00 0.00 0.00 2.41
414 415 6.872020 GTCTCTGTACTTGGTGCTTATTGTAA 59.128 38.462 0.00 0.00 0.00 2.41
415 416 7.549488 GTCTCTGTACTTGGTGCTTATTGTAAT 59.451 37.037 0.00 0.00 0.00 1.89
416 417 7.764443 TCTCTGTACTTGGTGCTTATTGTAATC 59.236 37.037 0.00 0.00 0.00 1.75
417 418 6.821665 TCTGTACTTGGTGCTTATTGTAATCC 59.178 38.462 0.00 0.00 0.00 3.01
418 419 6.717289 TGTACTTGGTGCTTATTGTAATCCT 58.283 36.000 0.00 0.00 0.00 3.24
419 420 6.597672 TGTACTTGGTGCTTATTGTAATCCTG 59.402 38.462 0.00 0.00 0.00 3.86
420 421 4.949856 ACTTGGTGCTTATTGTAATCCTGG 59.050 41.667 0.00 0.00 0.00 4.45
421 422 3.287222 TGGTGCTTATTGTAATCCTGGC 58.713 45.455 0.00 0.00 0.00 4.85
422 423 2.623416 GGTGCTTATTGTAATCCTGGCC 59.377 50.000 0.00 0.00 0.00 5.36
423 424 2.290641 GTGCTTATTGTAATCCTGGCCG 59.709 50.000 0.00 0.00 0.00 6.13
424 425 1.880027 GCTTATTGTAATCCTGGCCGG 59.120 52.381 3.88 3.88 0.00 6.13
425 426 2.748465 GCTTATTGTAATCCTGGCCGGT 60.748 50.000 11.58 0.00 0.00 5.28
426 427 3.551846 CTTATTGTAATCCTGGCCGGTT 58.448 45.455 11.58 1.23 0.00 4.44
427 428 1.762708 ATTGTAATCCTGGCCGGTTG 58.237 50.000 11.58 0.00 0.00 3.77
428 429 0.693622 TTGTAATCCTGGCCGGTTGA 59.306 50.000 11.58 1.27 0.00 3.18
429 430 0.916086 TGTAATCCTGGCCGGTTGAT 59.084 50.000 11.58 4.00 0.00 2.57
430 431 1.308998 GTAATCCTGGCCGGTTGATG 58.691 55.000 11.58 0.00 0.00 3.07
431 432 0.182537 TAATCCTGGCCGGTTGATGG 59.817 55.000 11.58 0.00 0.00 3.51
441 442 3.866883 CCGGTTGATGGCTTTGTTAAT 57.133 42.857 0.00 0.00 0.00 1.40
442 443 4.186856 CCGGTTGATGGCTTTGTTAATT 57.813 40.909 0.00 0.00 0.00 1.40
443 444 4.173256 CCGGTTGATGGCTTTGTTAATTC 58.827 43.478 0.00 0.00 0.00 2.17
444 445 4.321601 CCGGTTGATGGCTTTGTTAATTCA 60.322 41.667 0.00 0.00 0.00 2.57
445 446 5.226396 CGGTTGATGGCTTTGTTAATTCAA 58.774 37.500 0.00 0.00 0.00 2.69
446 447 5.694006 CGGTTGATGGCTTTGTTAATTCAAA 59.306 36.000 0.00 0.00 36.18 2.69
453 454 2.734276 TTGTTAATTCAAAGCCGGGC 57.266 45.000 12.11 12.11 0.00 6.13
454 455 1.917872 TGTTAATTCAAAGCCGGGCT 58.082 45.000 17.69 17.69 42.56 5.19
455 456 1.816224 TGTTAATTCAAAGCCGGGCTC 59.184 47.619 24.08 6.82 38.25 4.70
456 457 1.091537 TTAATTCAAAGCCGGGCTCG 58.908 50.000 24.08 16.71 38.25 5.03
457 458 0.035820 TAATTCAAAGCCGGGCTCGT 60.036 50.000 24.08 10.89 38.25 4.18
458 459 1.305930 AATTCAAAGCCGGGCTCGTC 61.306 55.000 24.08 0.00 38.25 4.20
459 460 3.894547 TTCAAAGCCGGGCTCGTCC 62.895 63.158 24.08 0.00 38.25 4.79
460 461 4.394712 CAAAGCCGGGCTCGTCCT 62.395 66.667 24.08 2.52 38.25 3.85
461 462 4.394712 AAAGCCGGGCTCGTCCTG 62.395 66.667 24.08 0.00 38.25 3.86
470 471 3.279183 CTCGTCCTGAGCCTTCGT 58.721 61.111 0.00 0.00 38.03 3.85
471 472 1.587054 CTCGTCCTGAGCCTTCGTT 59.413 57.895 0.00 0.00 38.03 3.85
472 473 0.456995 CTCGTCCTGAGCCTTCGTTC 60.457 60.000 0.00 0.00 38.03 3.95
473 474 0.894184 TCGTCCTGAGCCTTCGTTCT 60.894 55.000 0.00 0.00 0.00 3.01
474 475 0.809385 CGTCCTGAGCCTTCGTTCTA 59.191 55.000 0.00 0.00 0.00 2.10
475 476 1.405821 CGTCCTGAGCCTTCGTTCTAT 59.594 52.381 0.00 0.00 0.00 1.98
476 477 2.617308 CGTCCTGAGCCTTCGTTCTATA 59.383 50.000 0.00 0.00 0.00 1.31
483 484 8.429641 TCCTGAGCCTTCGTTCTATAAAAATAT 58.570 33.333 0.00 0.00 0.00 1.28
502 504 7.566760 AAATATGTGTCCGCTTTATTGATGA 57.433 32.000 0.00 0.00 0.00 2.92
509 511 7.931407 TGTGTCCGCTTTATTGATGAATAGTAT 59.069 33.333 0.00 0.00 0.00 2.12
511 513 8.988934 TGTCCGCTTTATTGATGAATAGTATTC 58.011 33.333 14.86 14.86 0.00 1.75
513 515 7.330946 TCCGCTTTATTGATGAATAGTATTCCG 59.669 37.037 18.20 10.76 0.00 4.30
536 538 9.958180 TCCGTATTGGATAATTGTCATGATATT 57.042 29.630 0.00 5.03 43.74 1.28
540 542 7.984422 TTGGATAATTGTCATGATATTCGCT 57.016 32.000 0.00 0.00 0.00 4.93
541 543 9.671279 ATTGGATAATTGTCATGATATTCGCTA 57.329 29.630 0.00 0.00 0.00 4.26
550 552 8.286191 TGTCATGATATTCGCTATCTACAGAT 57.714 34.615 0.00 0.00 37.67 2.90
630 639 2.032681 GCTTTCCTGGGCGAGTGT 59.967 61.111 0.00 0.00 0.00 3.55
697 718 2.357517 CACGTGTGAGCTGGGGAC 60.358 66.667 7.58 0.00 0.00 4.46
726 747 3.883744 CTTCTCCCCTGCAACGCGT 62.884 63.158 5.58 5.58 0.00 6.01
727 748 4.680237 TCTCCCCTGCAACGCGTG 62.680 66.667 14.98 8.57 0.00 5.34
888 1527 1.100510 CATGGCTCCATCACCAACAG 58.899 55.000 0.00 0.00 39.96 3.16
894 1533 0.764271 TCCATCACCAACAGCAGACA 59.236 50.000 0.00 0.00 0.00 3.41
895 1534 1.162698 CCATCACCAACAGCAGACAG 58.837 55.000 0.00 0.00 0.00 3.51
913 1552 2.557056 ACAGCTGCTAGTAGAACGAACA 59.443 45.455 15.27 0.00 0.00 3.18
915 1554 1.912110 GCTGCTAGTAGAACGAACACG 59.088 52.381 12.54 0.00 0.00 4.49
918 1557 1.135460 GCTAGTAGAACGAACACGCCT 60.135 52.381 0.00 0.00 0.00 5.52
919 1558 2.516923 CTAGTAGAACGAACACGCCTG 58.483 52.381 0.00 0.00 0.00 4.85
932 1571 3.895025 GCCTGAGCGAGCAATCAA 58.105 55.556 0.00 0.00 0.00 2.57
938 1577 1.970917 GAGCGAGCAATCAACCACCG 61.971 60.000 0.00 0.00 0.00 4.94
965 1607 5.874895 TCGATCGAAGAAACAGAGACTTA 57.125 39.130 16.99 0.00 43.58 2.24
966 1608 6.438259 TCGATCGAAGAAACAGAGACTTAT 57.562 37.500 16.99 0.00 43.58 1.73
967 1609 6.853720 TCGATCGAAGAAACAGAGACTTATT 58.146 36.000 16.99 0.00 43.58 1.40
1086 1728 2.125673 CCGACGCTGGGATTCGTT 60.126 61.111 0.00 0.00 39.22 3.85
1230 1872 1.988107 GCCATCCCCATCTAATCCTGA 59.012 52.381 0.00 0.00 0.00 3.86
1231 1873 2.376518 GCCATCCCCATCTAATCCTGAA 59.623 50.000 0.00 0.00 0.00 3.02
1232 1874 3.011032 GCCATCCCCATCTAATCCTGAAT 59.989 47.826 0.00 0.00 0.00 2.57
1233 1875 4.509843 GCCATCCCCATCTAATCCTGAATT 60.510 45.833 0.00 0.00 0.00 2.17
1234 1876 5.281193 GCCATCCCCATCTAATCCTGAATTA 60.281 44.000 0.00 0.00 0.00 1.40
1235 1877 6.183347 CCATCCCCATCTAATCCTGAATTAC 58.817 44.000 0.00 0.00 0.00 1.89
1236 1878 6.012157 CCATCCCCATCTAATCCTGAATTACT 60.012 42.308 0.00 0.00 0.00 2.24
1237 1879 6.439636 TCCCCATCTAATCCTGAATTACTG 57.560 41.667 0.00 0.00 0.00 2.74
1388 2037 1.135431 GTTTTGCTGTGTGTCAGTGCA 60.135 47.619 0.00 0.00 45.23 4.57
1389 2038 1.391577 TTTGCTGTGTGTCAGTGCAT 58.608 45.000 0.00 0.00 45.23 3.96
1401 2050 3.134458 GTCAGTGCATATAACCTGCCTC 58.866 50.000 0.00 0.00 38.89 4.70
1407 2056 5.545723 AGTGCATATAACCTGCCTCTCTTAT 59.454 40.000 0.00 0.00 38.89 1.73
1408 2057 5.641209 GTGCATATAACCTGCCTCTCTTATG 59.359 44.000 0.00 0.00 38.89 1.90
1409 2058 5.307976 TGCATATAACCTGCCTCTCTTATGT 59.692 40.000 0.00 0.00 38.89 2.29
1410 2059 6.183361 TGCATATAACCTGCCTCTCTTATGTT 60.183 38.462 0.00 0.00 38.89 2.71
1411 2060 6.370166 GCATATAACCTGCCTCTCTTATGTTC 59.630 42.308 0.00 0.00 33.44 3.18
1412 2061 7.675062 CATATAACCTGCCTCTCTTATGTTCT 58.325 38.462 0.00 0.00 0.00 3.01
1413 2062 4.917906 AACCTGCCTCTCTTATGTTCTT 57.082 40.909 0.00 0.00 0.00 2.52
1414 2063 7.676683 ATAACCTGCCTCTCTTATGTTCTTA 57.323 36.000 0.00 0.00 0.00 2.10
1415 2064 6.567602 AACCTGCCTCTCTTATGTTCTTAT 57.432 37.500 0.00 0.00 0.00 1.73
1416 2065 7.676683 AACCTGCCTCTCTTATGTTCTTATA 57.323 36.000 0.00 0.00 0.00 0.98
1417 2066 7.863901 ACCTGCCTCTCTTATGTTCTTATAT 57.136 36.000 0.00 0.00 0.00 0.86
1418 2067 8.268878 ACCTGCCTCTCTTATGTTCTTATATT 57.731 34.615 0.00 0.00 0.00 1.28
1419 2068 8.718656 ACCTGCCTCTCTTATGTTCTTATATTT 58.281 33.333 0.00 0.00 0.00 1.40
1420 2069 8.997323 CCTGCCTCTCTTATGTTCTTATATTTG 58.003 37.037 0.00 0.00 0.00 2.32
1421 2070 9.553064 CTGCCTCTCTTATGTTCTTATATTTGT 57.447 33.333 0.00 0.00 0.00 2.83
1422 2071 9.905713 TGCCTCTCTTATGTTCTTATATTTGTT 57.094 29.630 0.00 0.00 0.00 2.83
1431 2080 7.852971 TGTTCTTATATTTGTTTACGGAGGG 57.147 36.000 0.00 0.00 0.00 4.30
1432 2081 6.824704 TGTTCTTATATTTGTTTACGGAGGGG 59.175 38.462 0.00 0.00 0.00 4.79
1433 2082 6.811634 TCTTATATTTGTTTACGGAGGGGA 57.188 37.500 0.00 0.00 0.00 4.81
1434 2083 6.823497 TCTTATATTTGTTTACGGAGGGGAG 58.177 40.000 0.00 0.00 0.00 4.30
1435 2084 6.384886 TCTTATATTTGTTTACGGAGGGGAGT 59.615 38.462 0.00 0.00 0.00 3.85
1436 2085 7.564660 TCTTATATTTGTTTACGGAGGGGAGTA 59.435 37.037 0.00 0.00 0.00 2.59
1437 2086 6.758806 ATATTTGTTTACGGAGGGGAGTAT 57.241 37.500 0.00 0.00 0.00 2.12
1438 2087 7.860649 ATATTTGTTTACGGAGGGGAGTATA 57.139 36.000 0.00 0.00 0.00 1.47
1439 2088 6.758806 ATTTGTTTACGGAGGGGAGTATAT 57.241 37.500 0.00 0.00 0.00 0.86
1440 2089 5.540400 TTGTTTACGGAGGGGAGTATATG 57.460 43.478 0.00 0.00 0.00 1.78
1441 2090 4.549668 TGTTTACGGAGGGGAGTATATGT 58.450 43.478 0.00 0.00 0.00 2.29
1442 2091 4.964262 TGTTTACGGAGGGGAGTATATGTT 59.036 41.667 0.00 0.00 0.00 2.71
1443 2092 5.426185 TGTTTACGGAGGGGAGTATATGTTT 59.574 40.000 0.00 0.00 0.00 2.83
1444 2093 5.796424 TTACGGAGGGGAGTATATGTTTC 57.204 43.478 0.00 0.00 0.00 2.78
1445 2094 2.626743 ACGGAGGGGAGTATATGTTTCG 59.373 50.000 0.00 0.00 0.00 3.46
1446 2095 2.889045 CGGAGGGGAGTATATGTTTCGA 59.111 50.000 0.00 0.00 0.00 3.71
1447 2096 3.510360 CGGAGGGGAGTATATGTTTCGAT 59.490 47.826 0.00 0.00 0.00 3.59
1448 2097 4.618460 CGGAGGGGAGTATATGTTTCGATG 60.618 50.000 0.00 0.00 0.00 3.84
1449 2098 4.527038 GGAGGGGAGTATATGTTTCGATGA 59.473 45.833 0.00 0.00 0.00 2.92
1450 2099 5.470047 AGGGGAGTATATGTTTCGATGAC 57.530 43.478 0.00 0.00 0.00 3.06
1451 2100 4.283722 AGGGGAGTATATGTTTCGATGACC 59.716 45.833 0.00 0.00 0.00 4.02
1452 2101 4.562963 GGGGAGTATATGTTTCGATGACCC 60.563 50.000 0.00 0.00 0.00 4.46
1453 2102 4.283722 GGGAGTATATGTTTCGATGACCCT 59.716 45.833 0.00 0.00 0.00 4.34
1454 2103 5.230942 GGAGTATATGTTTCGATGACCCTG 58.769 45.833 0.00 0.00 0.00 4.45
1455 2104 5.010719 GGAGTATATGTTTCGATGACCCTGA 59.989 44.000 0.00 0.00 0.00 3.86
1456 2105 6.462487 GGAGTATATGTTTCGATGACCCTGAA 60.462 42.308 0.00 0.00 0.00 3.02
1457 2106 6.884832 AGTATATGTTTCGATGACCCTGAAA 58.115 36.000 0.00 0.00 0.00 2.69
1460 2109 3.813529 GTTTCGATGACCCTGAAACAG 57.186 47.619 11.06 0.00 46.61 3.16
1461 2110 3.139077 GTTTCGATGACCCTGAAACAGT 58.861 45.455 11.06 0.00 46.61 3.55
1462 2111 4.312443 GTTTCGATGACCCTGAAACAGTA 58.688 43.478 11.06 0.00 46.61 2.74
1463 2112 3.868757 TCGATGACCCTGAAACAGTAG 57.131 47.619 0.00 0.00 0.00 2.57
1464 2113 3.427573 TCGATGACCCTGAAACAGTAGA 58.572 45.455 0.00 0.00 0.00 2.59
1465 2114 3.192844 TCGATGACCCTGAAACAGTAGAC 59.807 47.826 0.00 0.00 0.00 2.59
1466 2115 3.676324 CGATGACCCTGAAACAGTAGACC 60.676 52.174 0.00 0.00 0.00 3.85
1467 2116 2.972348 TGACCCTGAAACAGTAGACCT 58.028 47.619 0.00 0.00 0.00 3.85
1468 2117 4.122337 TGACCCTGAAACAGTAGACCTA 57.878 45.455 0.00 0.00 0.00 3.08
1469 2118 4.485875 TGACCCTGAAACAGTAGACCTAA 58.514 43.478 0.00 0.00 0.00 2.69
1470 2119 5.091552 TGACCCTGAAACAGTAGACCTAAT 58.908 41.667 0.00 0.00 0.00 1.73
1471 2120 6.258354 TGACCCTGAAACAGTAGACCTAATA 58.742 40.000 0.00 0.00 0.00 0.98
1472 2121 6.380274 TGACCCTGAAACAGTAGACCTAATAG 59.620 42.308 0.00 0.00 0.00 1.73
1473 2122 6.262207 ACCCTGAAACAGTAGACCTAATAGT 58.738 40.000 0.00 0.00 0.00 2.12
1474 2123 6.729569 ACCCTGAAACAGTAGACCTAATAGTT 59.270 38.462 0.00 0.00 0.00 2.24
1475 2124 7.093421 ACCCTGAAACAGTAGACCTAATAGTTC 60.093 40.741 0.00 0.00 0.00 3.01
1476 2125 7.124448 CCCTGAAACAGTAGACCTAATAGTTCT 59.876 40.741 0.00 0.00 0.00 3.01
1477 2126 9.186837 CCTGAAACAGTAGACCTAATAGTTCTA 57.813 37.037 0.00 0.00 0.00 2.10
1479 2128 9.750783 TGAAACAGTAGACCTAATAGTTCTACT 57.249 33.333 18.13 18.13 42.77 2.57
1482 2131 9.750783 AACAGTAGACCTAATAGTTCTACTTCA 57.249 33.333 20.38 0.00 40.85 3.02
1483 2132 9.750783 ACAGTAGACCTAATAGTTCTACTTCAA 57.249 33.333 20.38 0.00 40.85 2.69
1562 2211 4.263506 CCACTTTTCTCTAACATGTCCCCT 60.264 45.833 0.00 0.00 0.00 4.79
1566 2215 0.911769 CTCTAACATGTCCCCTGCCA 59.088 55.000 0.00 0.00 0.00 4.92
1568 2217 1.281867 TCTAACATGTCCCCTGCCAAG 59.718 52.381 0.00 0.00 0.00 3.61
1569 2218 1.281867 CTAACATGTCCCCTGCCAAGA 59.718 52.381 0.00 0.00 0.00 3.02
1572 2221 2.971598 ATGTCCCCTGCCAAGACCG 61.972 63.158 0.00 0.00 0.00 4.79
1573 2222 3.319198 GTCCCCTGCCAAGACCGA 61.319 66.667 0.00 0.00 0.00 4.69
1583 2271 1.601419 CCAAGACCGACGCCTTCCTA 61.601 60.000 0.00 0.00 0.00 2.94
1662 2350 2.681778 CGGGGCTCACTGACCTCT 60.682 66.667 0.00 0.00 45.52 3.69
1686 2374 1.745653 TCTCGCGTTCTGAGATCACAT 59.254 47.619 5.77 0.00 37.55 3.21
1691 2379 2.625737 CGTTCTGAGATCACATGCCTT 58.374 47.619 0.00 0.00 0.00 4.35
1740 2434 5.475220 CGTTGTAGATCCATAGTCTCCAGAT 59.525 44.000 0.00 0.00 0.00 2.90
1787 2481 1.478510 TCATCTGAGAACCTCCTTCGC 59.521 52.381 0.00 0.00 33.60 4.70
1942 2636 0.176680 ACCACCAATCTAGAGCGCTG 59.823 55.000 18.48 0.00 0.00 5.18
2070 2767 1.071385 CCAGAGTGGAGCACTTGAAGT 59.929 52.381 0.00 0.00 45.44 3.01
2107 2804 2.740904 CGGATGCTGAGCTGAGAATTGA 60.741 50.000 3.62 0.00 0.00 2.57
2162 2859 2.995939 CAAAGAATCACTGCAGCGTAGA 59.004 45.455 15.27 7.44 0.00 2.59
2174 2871 2.159170 GCAGCGTAGATCTGAGTTCCTT 60.159 50.000 5.18 0.00 33.54 3.36
2196 2893 2.045926 CCGAGGTGGGCTTGGAAG 60.046 66.667 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.995669 CACCACCAACACGCGTCG 61.996 66.667 9.86 8.08 0.00 5.12
4 5 4.307908 GCACCACCAACACGCGTC 62.308 66.667 9.86 0.00 0.00 5.19
5 6 4.849310 AGCACCACCAACACGCGT 62.849 61.111 5.58 5.58 0.00 6.01
6 7 4.012895 GAGCACCACCAACACGCG 62.013 66.667 3.53 3.53 0.00 6.01
7 8 2.591715 AGAGCACCACCAACACGC 60.592 61.111 0.00 0.00 0.00 5.34
8 9 2.253758 CCAGAGCACCACCAACACG 61.254 63.158 0.00 0.00 0.00 4.49
9 10 0.107831 TACCAGAGCACCACCAACAC 59.892 55.000 0.00 0.00 0.00 3.32
10 11 1.064003 ATACCAGAGCACCACCAACA 58.936 50.000 0.00 0.00 0.00 3.33
11 12 1.453155 CATACCAGAGCACCACCAAC 58.547 55.000 0.00 0.00 0.00 3.77
12 13 0.327924 CCATACCAGAGCACCACCAA 59.672 55.000 0.00 0.00 0.00 3.67
13 14 1.990424 CCATACCAGAGCACCACCA 59.010 57.895 0.00 0.00 0.00 4.17
14 15 1.452108 GCCATACCAGAGCACCACC 60.452 63.158 0.00 0.00 0.00 4.61
15 16 0.107017 ATGCCATACCAGAGCACCAC 60.107 55.000 0.00 0.00 39.77 4.16
16 17 0.625316 AATGCCATACCAGAGCACCA 59.375 50.000 0.00 0.00 39.77 4.17
17 18 1.678101 GAAATGCCATACCAGAGCACC 59.322 52.381 0.00 0.00 39.77 5.01
18 19 1.331756 CGAAATGCCATACCAGAGCAC 59.668 52.381 0.00 0.00 39.77 4.40
19 20 1.065491 ACGAAATGCCATACCAGAGCA 60.065 47.619 0.00 0.00 41.50 4.26
20 21 1.331756 CACGAAATGCCATACCAGAGC 59.668 52.381 0.00 0.00 0.00 4.09
21 22 2.352651 CACACGAAATGCCATACCAGAG 59.647 50.000 0.00 0.00 0.00 3.35
22 23 2.355197 CACACGAAATGCCATACCAGA 58.645 47.619 0.00 0.00 0.00 3.86
23 24 1.401552 CCACACGAAATGCCATACCAG 59.598 52.381 0.00 0.00 0.00 4.00
24 25 1.458398 CCACACGAAATGCCATACCA 58.542 50.000 0.00 0.00 0.00 3.25
25 26 0.100503 GCCACACGAAATGCCATACC 59.899 55.000 0.00 0.00 0.00 2.73
26 27 0.100503 GGCCACACGAAATGCCATAC 59.899 55.000 0.00 0.00 43.46 2.39
27 28 2.487918 GGCCACACGAAATGCCATA 58.512 52.632 0.00 0.00 43.46 2.74
28 29 3.287445 GGCCACACGAAATGCCAT 58.713 55.556 0.00 0.00 43.46 4.40
30 31 1.153784 CATGGCCACACGAAATGCC 60.154 57.895 8.16 0.00 44.27 4.40
31 32 1.153784 CCATGGCCACACGAAATGC 60.154 57.895 8.16 0.00 0.00 3.56
32 33 1.153784 GCCATGGCCACACGAAATG 60.154 57.895 27.24 0.00 34.56 2.32
33 34 2.699768 CGCCATGGCCACACGAAAT 61.700 57.895 30.79 0.00 37.98 2.17
34 35 3.361158 CGCCATGGCCACACGAAA 61.361 61.111 30.79 0.00 37.98 3.46
35 36 4.634703 ACGCCATGGCCACACGAA 62.635 61.111 30.79 0.00 37.98 3.85
43 44 4.460683 TACACCCGACGCCATGGC 62.461 66.667 27.67 27.67 37.85 4.40
44 45 2.510691 GTACACCCGACGCCATGG 60.511 66.667 7.63 7.63 0.00 3.66
45 46 2.098233 GTGTACACCCGACGCCATG 61.098 63.158 15.42 0.00 0.00 3.66
46 47 2.263540 GTGTACACCCGACGCCAT 59.736 61.111 15.42 0.00 0.00 4.40
47 48 3.993584 GGTGTACACCCGACGCCA 61.994 66.667 31.39 0.00 45.18 5.69
56 57 1.880027 CCCAAGAGCAAAGGTGTACAC 59.120 52.381 18.01 18.01 0.00 2.90
57 58 1.771854 TCCCAAGAGCAAAGGTGTACA 59.228 47.619 0.00 0.00 0.00 2.90
58 59 2.038557 TCTCCCAAGAGCAAAGGTGTAC 59.961 50.000 0.00 0.00 40.22 2.90
59 60 2.303022 CTCTCCCAAGAGCAAAGGTGTA 59.697 50.000 0.00 0.00 42.54 2.90
60 61 1.072965 CTCTCCCAAGAGCAAAGGTGT 59.927 52.381 0.00 0.00 42.54 4.16
61 62 1.818642 CTCTCCCAAGAGCAAAGGTG 58.181 55.000 0.00 0.00 42.54 4.00
70 71 1.478510 GATGAGAACGCTCTCCCAAGA 59.521 52.381 13.08 0.00 46.67 3.02
71 72 1.800655 CGATGAGAACGCTCTCCCAAG 60.801 57.143 13.08 0.00 46.67 3.61
72 73 0.173481 CGATGAGAACGCTCTCCCAA 59.827 55.000 13.08 0.00 46.67 4.12
73 74 0.965866 ACGATGAGAACGCTCTCCCA 60.966 55.000 13.08 0.00 46.67 4.37
74 75 0.248702 GACGATGAGAACGCTCTCCC 60.249 60.000 13.08 4.61 46.67 4.30
75 76 0.248702 GGACGATGAGAACGCTCTCC 60.249 60.000 13.08 0.00 46.67 3.71
77 78 1.025113 TCGGACGATGAGAACGCTCT 61.025 55.000 0.00 0.00 41.84 4.09
78 79 0.862283 GTCGGACGATGAGAACGCTC 60.862 60.000 0.00 0.00 41.67 5.03
79 80 1.136984 GTCGGACGATGAGAACGCT 59.863 57.895 0.00 0.00 0.00 5.07
80 81 2.215604 CGTCGGACGATGAGAACGC 61.216 63.158 25.29 0.00 46.05 4.84
81 82 1.582937 CCGTCGGACGATGAGAACG 60.583 63.158 30.33 8.33 46.05 3.95
82 83 0.381089 ATCCGTCGGACGATGAGAAC 59.619 55.000 30.33 0.00 46.05 3.01
83 84 0.661552 GATCCGTCGGACGATGAGAA 59.338 55.000 30.33 9.59 46.05 2.87
84 85 1.496403 CGATCCGTCGGACGATGAGA 61.496 60.000 30.33 19.02 46.05 3.27
85 86 1.082692 CGATCCGTCGGACGATGAG 60.083 63.158 30.33 14.39 46.05 2.90
86 87 3.019800 CGATCCGTCGGACGATGA 58.980 61.111 30.33 20.05 46.05 2.92
114 115 3.946201 CCCTAGCCCATCGCCTGG 61.946 72.222 0.00 0.00 45.51 4.45
115 116 2.844362 TCCCTAGCCCATCGCCTG 60.844 66.667 0.00 0.00 38.78 4.85
116 117 2.525381 CTCCCTAGCCCATCGCCT 60.525 66.667 0.00 0.00 38.78 5.52
117 118 4.321966 GCTCCCTAGCCCATCGCC 62.322 72.222 0.00 0.00 43.40 5.54
137 138 3.195825 ACAACCTCCTACATCTCCGAAAG 59.804 47.826 0.00 0.00 0.00 2.62
138 139 3.170717 ACAACCTCCTACATCTCCGAAA 58.829 45.455 0.00 0.00 0.00 3.46
139 140 2.758979 GACAACCTCCTACATCTCCGAA 59.241 50.000 0.00 0.00 0.00 4.30
140 141 2.376109 GACAACCTCCTACATCTCCGA 58.624 52.381 0.00 0.00 0.00 4.55
141 142 1.065701 CGACAACCTCCTACATCTCCG 59.934 57.143 0.00 0.00 0.00 4.63
142 143 1.202428 GCGACAACCTCCTACATCTCC 60.202 57.143 0.00 0.00 0.00 3.71
143 144 1.202428 GGCGACAACCTCCTACATCTC 60.202 57.143 0.00 0.00 0.00 2.75
144 145 0.824759 GGCGACAACCTCCTACATCT 59.175 55.000 0.00 0.00 0.00 2.90
145 146 0.527817 CGGCGACAACCTCCTACATC 60.528 60.000 0.00 0.00 0.00 3.06
146 147 0.968901 TCGGCGACAACCTCCTACAT 60.969 55.000 4.99 0.00 0.00 2.29
147 148 0.968901 ATCGGCGACAACCTCCTACA 60.969 55.000 13.76 0.00 0.00 2.74
148 149 0.175073 AATCGGCGACAACCTCCTAC 59.825 55.000 13.76 0.00 0.00 3.18
149 150 0.458669 GAATCGGCGACAACCTCCTA 59.541 55.000 13.76 0.00 0.00 2.94
150 151 1.218316 GAATCGGCGACAACCTCCT 59.782 57.895 13.76 0.00 0.00 3.69
151 152 2.165301 CGAATCGGCGACAACCTCC 61.165 63.158 13.76 0.00 0.00 4.30
152 153 2.165301 CCGAATCGGCGACAACCTC 61.165 63.158 13.76 3.19 41.17 3.85
153 154 2.125673 CCGAATCGGCGACAACCT 60.126 61.111 13.76 0.00 41.17 3.50
171 172 4.559063 CAGCTCCATGGGCTCCGG 62.559 72.222 20.88 9.73 38.03 5.14
173 174 4.891037 GGCAGCTCCATGGGCTCC 62.891 72.222 20.88 19.48 38.03 4.70
174 175 4.119363 TGGCAGCTCCATGGGCTC 62.119 66.667 20.88 15.87 40.72 4.70
182 183 1.520342 GAGTGACGATGGCAGCTCC 60.520 63.158 0.00 0.00 0.00 4.70
183 184 1.520342 GGAGTGACGATGGCAGCTC 60.520 63.158 0.00 0.00 0.00 4.09
184 185 2.581354 GGAGTGACGATGGCAGCT 59.419 61.111 0.00 0.00 0.00 4.24
185 186 2.512515 GGGAGTGACGATGGCAGC 60.513 66.667 0.00 0.00 0.00 5.25
186 187 2.202797 CGGGAGTGACGATGGCAG 60.203 66.667 0.00 0.00 0.00 4.85
187 188 4.451150 GCGGGAGTGACGATGGCA 62.451 66.667 0.00 0.00 0.00 4.92
188 189 3.665675 AAGCGGGAGTGACGATGGC 62.666 63.158 0.00 0.00 0.00 4.40
189 190 1.811266 CAAGCGGGAGTGACGATGG 60.811 63.158 0.00 0.00 0.00 3.51
190 191 2.456119 GCAAGCGGGAGTGACGATG 61.456 63.158 0.00 0.00 0.00 3.84
191 192 1.320344 TAGCAAGCGGGAGTGACGAT 61.320 55.000 0.00 0.00 0.00 3.73
192 193 1.934220 CTAGCAAGCGGGAGTGACGA 61.934 60.000 0.00 0.00 0.00 4.20
193 194 1.517257 CTAGCAAGCGGGAGTGACG 60.517 63.158 0.00 0.00 0.00 4.35
194 195 1.811679 GCTAGCAAGCGGGAGTGAC 60.812 63.158 10.63 0.00 39.39 3.67
195 196 2.579201 GCTAGCAAGCGGGAGTGA 59.421 61.111 10.63 0.00 39.39 3.41
204 205 0.463620 GAGGAGACCCAGCTAGCAAG 59.536 60.000 18.83 8.92 33.88 4.01
205 206 0.252239 TGAGGAGACCCAGCTAGCAA 60.252 55.000 18.83 0.00 33.88 3.91
206 207 0.252239 TTGAGGAGACCCAGCTAGCA 60.252 55.000 18.83 0.00 33.88 3.49
207 208 0.463620 CTTGAGGAGACCCAGCTAGC 59.536 60.000 6.62 6.62 33.88 3.42
208 209 1.118838 CCTTGAGGAGACCCAGCTAG 58.881 60.000 0.00 0.00 37.39 3.42
209 210 0.413832 ACCTTGAGGAGACCCAGCTA 59.586 55.000 3.59 0.00 38.94 3.32
210 211 0.907230 GACCTTGAGGAGACCCAGCT 60.907 60.000 3.59 0.00 38.94 4.24
211 212 1.194781 TGACCTTGAGGAGACCCAGC 61.195 60.000 3.59 0.00 38.94 4.85
212 213 0.901124 CTGACCTTGAGGAGACCCAG 59.099 60.000 3.59 0.10 38.94 4.45
213 214 0.487325 TCTGACCTTGAGGAGACCCA 59.513 55.000 3.59 0.00 38.94 4.51
214 215 1.484240 CATCTGACCTTGAGGAGACCC 59.516 57.143 3.59 0.00 38.94 4.46
215 216 1.484240 CCATCTGACCTTGAGGAGACC 59.516 57.143 3.59 0.00 38.94 3.85
216 217 2.093764 CACCATCTGACCTTGAGGAGAC 60.094 54.545 3.59 0.00 38.94 3.36
217 218 2.182827 CACCATCTGACCTTGAGGAGA 58.817 52.381 3.59 0.00 38.94 3.71
218 219 1.905215 ACACCATCTGACCTTGAGGAG 59.095 52.381 3.59 0.00 38.94 3.69
219 220 1.902508 GACACCATCTGACCTTGAGGA 59.097 52.381 3.59 0.00 38.94 3.71
220 221 1.905215 AGACACCATCTGACCTTGAGG 59.095 52.381 0.00 0.00 35.81 3.86
221 222 2.416566 CGAGACACCATCTGACCTTGAG 60.417 54.545 0.00 0.00 38.00 3.02
222 223 1.546029 CGAGACACCATCTGACCTTGA 59.454 52.381 0.00 0.00 38.00 3.02
223 224 1.404717 CCGAGACACCATCTGACCTTG 60.405 57.143 0.00 0.00 38.00 3.61
224 225 0.898320 CCGAGACACCATCTGACCTT 59.102 55.000 0.00 0.00 38.00 3.50
225 226 0.251832 ACCGAGACACCATCTGACCT 60.252 55.000 0.00 0.00 38.00 3.85
226 227 0.108615 CACCGAGACACCATCTGACC 60.109 60.000 0.00 0.00 38.00 4.02
227 228 0.108615 CCACCGAGACACCATCTGAC 60.109 60.000 0.00 0.00 38.00 3.51
228 229 1.257750 CCCACCGAGACACCATCTGA 61.258 60.000 0.00 0.00 38.00 3.27
229 230 1.219124 CCCACCGAGACACCATCTG 59.781 63.158 0.00 0.00 38.00 2.90
230 231 1.990060 CCCCACCGAGACACCATCT 60.990 63.158 0.00 0.00 41.91 2.90
231 232 2.291043 ACCCCACCGAGACACCATC 61.291 63.158 0.00 0.00 0.00 3.51
232 233 2.203938 ACCCCACCGAGACACCAT 60.204 61.111 0.00 0.00 0.00 3.55
233 234 3.238497 CACCCCACCGAGACACCA 61.238 66.667 0.00 0.00 0.00 4.17
234 235 4.016706 CCACCCCACCGAGACACC 62.017 72.222 0.00 0.00 0.00 4.16
235 236 2.240162 GATCCACCCCACCGAGACAC 62.240 65.000 0.00 0.00 0.00 3.67
236 237 1.987855 GATCCACCCCACCGAGACA 60.988 63.158 0.00 0.00 0.00 3.41
237 238 2.901042 GATCCACCCCACCGAGAC 59.099 66.667 0.00 0.00 0.00 3.36
238 239 2.758327 CGATCCACCCCACCGAGA 60.758 66.667 0.00 0.00 0.00 4.04
239 240 4.530857 GCGATCCACCCCACCGAG 62.531 72.222 0.00 0.00 0.00 4.63
242 243 3.682292 GAGTGCGATCCACCCCACC 62.682 68.421 9.80 0.00 45.83 4.61
243 244 2.125106 GAGTGCGATCCACCCCAC 60.125 66.667 9.80 0.44 45.83 4.61
244 245 3.770040 CGAGTGCGATCCACCCCA 61.770 66.667 9.80 0.00 45.83 4.96
245 246 4.530857 CCGAGTGCGATCCACCCC 62.531 72.222 9.80 3.65 45.83 4.95
246 247 3.771160 ACCGAGTGCGATCCACCC 61.771 66.667 9.80 0.00 45.83 4.61
247 248 2.509336 CACCGAGTGCGATCCACC 60.509 66.667 9.80 3.13 45.83 4.61
248 249 2.509336 CCACCGAGTGCGATCCAC 60.509 66.667 6.29 6.29 45.01 4.02
249 250 2.678580 TCCACCGAGTGCGATCCA 60.679 61.111 0.00 0.00 40.82 3.41
250 251 2.105128 CTCCACCGAGTGCGATCC 59.895 66.667 0.00 0.00 40.82 3.36
251 252 2.105128 CCTCCACCGAGTGCGATC 59.895 66.667 0.00 0.00 40.82 3.69
252 253 3.461773 CCCTCCACCGAGTGCGAT 61.462 66.667 0.00 0.00 40.82 4.58
255 256 3.959991 GAAGCCCTCCACCGAGTGC 62.960 68.421 0.00 0.00 39.58 4.40
256 257 2.111999 TTGAAGCCCTCCACCGAGTG 62.112 60.000 0.00 0.00 33.93 3.51
257 258 1.841556 TTGAAGCCCTCCACCGAGT 60.842 57.895 0.00 0.00 33.93 4.18
258 259 1.376037 GTTGAAGCCCTCCACCGAG 60.376 63.158 0.00 0.00 35.72 4.63
259 260 1.488705 ATGTTGAAGCCCTCCACCGA 61.489 55.000 0.00 0.00 0.00 4.69
260 261 1.002134 ATGTTGAAGCCCTCCACCG 60.002 57.895 0.00 0.00 0.00 4.94
261 262 0.329596 AGATGTTGAAGCCCTCCACC 59.670 55.000 0.00 0.00 0.00 4.61
262 263 1.680249 GGAGATGTTGAAGCCCTCCAC 60.680 57.143 0.00 0.00 42.15 4.02
263 264 0.620556 GGAGATGTTGAAGCCCTCCA 59.379 55.000 0.00 0.00 42.15 3.86
264 265 0.620556 TGGAGATGTTGAAGCCCTCC 59.379 55.000 0.00 0.00 42.72 4.30
265 266 2.363683 CTTGGAGATGTTGAAGCCCTC 58.636 52.381 0.00 0.00 0.00 4.30
266 267 1.615384 GCTTGGAGATGTTGAAGCCCT 60.615 52.381 0.00 0.00 35.76 5.19
267 268 0.813821 GCTTGGAGATGTTGAAGCCC 59.186 55.000 0.00 0.00 35.76 5.19
268 269 1.471684 CAGCTTGGAGATGTTGAAGCC 59.528 52.381 0.00 0.00 41.47 4.35
269 270 1.471684 CCAGCTTGGAGATGTTGAAGC 59.528 52.381 0.00 0.00 40.96 3.86
270 271 2.746362 GACCAGCTTGGAGATGTTGAAG 59.254 50.000 8.91 0.00 40.96 3.02
271 272 2.373169 AGACCAGCTTGGAGATGTTGAA 59.627 45.455 8.91 0.00 40.96 2.69
272 273 1.980765 AGACCAGCTTGGAGATGTTGA 59.019 47.619 8.91 0.00 40.96 3.18
273 274 2.486472 AGACCAGCTTGGAGATGTTG 57.514 50.000 8.91 0.00 40.96 3.33
283 284 6.429385 CAGAATCTAAAGAACAAGACCAGCTT 59.571 38.462 0.00 0.00 37.29 3.74
284 285 5.936956 CAGAATCTAAAGAACAAGACCAGCT 59.063 40.000 0.00 0.00 0.00 4.24
285 286 5.391416 GCAGAATCTAAAGAACAAGACCAGC 60.391 44.000 0.00 0.00 0.00 4.85
286 287 5.702670 TGCAGAATCTAAAGAACAAGACCAG 59.297 40.000 0.00 0.00 0.00 4.00
287 288 5.620206 TGCAGAATCTAAAGAACAAGACCA 58.380 37.500 0.00 0.00 0.00 4.02
288 289 6.597280 AGATGCAGAATCTAAAGAACAAGACC 59.403 38.462 0.00 0.00 44.22 3.85
289 290 7.608308 AGATGCAGAATCTAAAGAACAAGAC 57.392 36.000 0.00 0.00 44.22 3.01
290 291 8.509690 CAAAGATGCAGAATCTAAAGAACAAGA 58.490 33.333 0.00 0.00 45.37 3.02
291 292 8.670804 CAAAGATGCAGAATCTAAAGAACAAG 57.329 34.615 0.00 0.00 45.37 3.16
309 310 5.674525 TCCTACCATCTACAAGCAAAGATG 58.325 41.667 5.53 5.53 45.71 2.90
310 311 5.957771 TCCTACCATCTACAAGCAAAGAT 57.042 39.130 0.00 0.00 32.63 2.40
311 312 5.734720 CTTCCTACCATCTACAAGCAAAGA 58.265 41.667 0.00 0.00 0.00 2.52
312 313 4.333926 GCTTCCTACCATCTACAAGCAAAG 59.666 45.833 0.00 0.00 36.94 2.77
313 314 4.261801 GCTTCCTACCATCTACAAGCAAA 58.738 43.478 0.00 0.00 36.94 3.68
314 315 3.370527 GGCTTCCTACCATCTACAAGCAA 60.371 47.826 4.05 0.00 38.39 3.91
315 316 2.170607 GGCTTCCTACCATCTACAAGCA 59.829 50.000 4.05 0.00 38.39 3.91
316 317 2.436173 AGGCTTCCTACCATCTACAAGC 59.564 50.000 0.00 0.00 36.36 4.01
317 318 4.762289 AAGGCTTCCTACCATCTACAAG 57.238 45.455 0.00 0.00 31.13 3.16
318 319 5.514500 AAAAGGCTTCCTACCATCTACAA 57.486 39.130 0.00 0.00 31.13 2.41
319 320 5.724854 ACTAAAAGGCTTCCTACCATCTACA 59.275 40.000 0.00 0.00 31.13 2.74
320 321 6.236558 ACTAAAAGGCTTCCTACCATCTAC 57.763 41.667 0.00 0.00 31.13 2.59
321 322 6.214819 ACAACTAAAAGGCTTCCTACCATCTA 59.785 38.462 0.00 0.00 31.13 1.98
322 323 5.014228 ACAACTAAAAGGCTTCCTACCATCT 59.986 40.000 0.00 0.00 31.13 2.90
323 324 5.254115 ACAACTAAAAGGCTTCCTACCATC 58.746 41.667 0.00 0.00 31.13 3.51
324 325 5.256806 ACAACTAAAAGGCTTCCTACCAT 57.743 39.130 0.00 0.00 31.13 3.55
325 326 4.717279 ACAACTAAAAGGCTTCCTACCA 57.283 40.909 0.00 0.00 31.13 3.25
326 327 5.123502 GCTAACAACTAAAAGGCTTCCTACC 59.876 44.000 0.00 0.00 31.13 3.18
327 328 5.704053 TGCTAACAACTAAAAGGCTTCCTAC 59.296 40.000 0.00 0.00 31.13 3.18
328 329 5.704053 GTGCTAACAACTAAAAGGCTTCCTA 59.296 40.000 0.00 0.00 31.13 2.94
329 330 4.519350 GTGCTAACAACTAAAAGGCTTCCT 59.481 41.667 0.00 0.00 33.87 3.36
330 331 4.277423 TGTGCTAACAACTAAAAGGCTTCC 59.723 41.667 0.00 0.00 31.82 3.46
331 332 5.432885 TGTGCTAACAACTAAAAGGCTTC 57.567 39.130 0.00 0.00 31.82 3.86
332 333 4.261614 GCTGTGCTAACAACTAAAAGGCTT 60.262 41.667 0.00 0.00 35.37 4.35
333 334 3.253432 GCTGTGCTAACAACTAAAAGGCT 59.747 43.478 0.00 0.00 35.37 4.58
334 335 3.004315 TGCTGTGCTAACAACTAAAAGGC 59.996 43.478 0.00 0.00 35.37 4.35
335 336 4.275936 AGTGCTGTGCTAACAACTAAAAGG 59.724 41.667 0.00 0.00 35.37 3.11
336 337 5.237344 AGAGTGCTGTGCTAACAACTAAAAG 59.763 40.000 0.00 0.00 35.37 2.27
337 338 5.123227 AGAGTGCTGTGCTAACAACTAAAA 58.877 37.500 0.00 0.00 35.37 1.52
338 339 4.703897 AGAGTGCTGTGCTAACAACTAAA 58.296 39.130 0.00 0.00 35.37 1.85
339 340 4.336889 AGAGTGCTGTGCTAACAACTAA 57.663 40.909 0.00 0.00 35.37 2.24
340 341 4.058124 CAAGAGTGCTGTGCTAACAACTA 58.942 43.478 0.00 0.00 35.37 2.24
341 342 2.874701 CAAGAGTGCTGTGCTAACAACT 59.125 45.455 0.00 0.00 35.37 3.16
342 343 2.614057 ACAAGAGTGCTGTGCTAACAAC 59.386 45.455 0.00 0.00 35.37 3.32
343 344 2.917933 ACAAGAGTGCTGTGCTAACAA 58.082 42.857 0.00 0.00 35.37 2.83
344 345 2.620251 ACAAGAGTGCTGTGCTAACA 57.380 45.000 0.00 0.00 34.34 2.41
345 346 2.737252 GGTACAAGAGTGCTGTGCTAAC 59.263 50.000 0.00 0.00 0.00 2.34
346 347 2.289444 GGGTACAAGAGTGCTGTGCTAA 60.289 50.000 0.00 0.00 0.00 3.09
347 348 1.275291 GGGTACAAGAGTGCTGTGCTA 59.725 52.381 0.00 0.00 0.00 3.49
348 349 0.035458 GGGTACAAGAGTGCTGTGCT 59.965 55.000 0.00 0.00 0.00 4.40
349 350 0.035458 AGGGTACAAGAGTGCTGTGC 59.965 55.000 0.00 0.00 0.00 4.57
350 351 2.550830 AAGGGTACAAGAGTGCTGTG 57.449 50.000 0.00 0.00 0.00 3.66
351 352 3.577805 AAAAGGGTACAAGAGTGCTGT 57.422 42.857 0.00 0.00 0.00 4.40
352 353 3.437049 GCTAAAAGGGTACAAGAGTGCTG 59.563 47.826 0.00 0.00 0.00 4.41
353 354 3.328050 AGCTAAAAGGGTACAAGAGTGCT 59.672 43.478 0.00 0.00 0.00 4.40
354 355 3.437049 CAGCTAAAAGGGTACAAGAGTGC 59.563 47.826 0.00 0.00 0.00 4.40
355 356 4.642429 ACAGCTAAAAGGGTACAAGAGTG 58.358 43.478 0.00 0.00 0.00 3.51
356 357 4.976540 ACAGCTAAAAGGGTACAAGAGT 57.023 40.909 0.00 0.00 0.00 3.24
357 358 6.486993 AGAAAACAGCTAAAAGGGTACAAGAG 59.513 38.462 0.00 0.00 0.00 2.85
358 359 6.262273 CAGAAAACAGCTAAAAGGGTACAAGA 59.738 38.462 0.00 0.00 0.00 3.02
359 360 6.039382 ACAGAAAACAGCTAAAAGGGTACAAG 59.961 38.462 0.00 0.00 0.00 3.16
360 361 5.889289 ACAGAAAACAGCTAAAAGGGTACAA 59.111 36.000 0.00 0.00 0.00 2.41
361 362 5.298276 CACAGAAAACAGCTAAAAGGGTACA 59.702 40.000 0.00 0.00 0.00 2.90
362 363 5.298527 ACACAGAAAACAGCTAAAAGGGTAC 59.701 40.000 0.00 0.00 0.00 3.34
363 364 5.442391 ACACAGAAAACAGCTAAAAGGGTA 58.558 37.500 0.00 0.00 0.00 3.69
364 365 4.278310 ACACAGAAAACAGCTAAAAGGGT 58.722 39.130 0.00 0.00 0.00 4.34
365 366 4.918810 ACACAGAAAACAGCTAAAAGGG 57.081 40.909 0.00 0.00 0.00 3.95
366 367 4.970003 CGAACACAGAAAACAGCTAAAAGG 59.030 41.667 0.00 0.00 0.00 3.11
367 368 5.569413 ACGAACACAGAAAACAGCTAAAAG 58.431 37.500 0.00 0.00 0.00 2.27
368 369 5.353123 AGACGAACACAGAAAACAGCTAAAA 59.647 36.000 0.00 0.00 0.00 1.52
369 370 4.873827 AGACGAACACAGAAAACAGCTAAA 59.126 37.500 0.00 0.00 0.00 1.85
370 371 4.439057 AGACGAACACAGAAAACAGCTAA 58.561 39.130 0.00 0.00 0.00 3.09
371 372 4.049186 GAGACGAACACAGAAAACAGCTA 58.951 43.478 0.00 0.00 0.00 3.32
372 373 2.866762 GAGACGAACACAGAAAACAGCT 59.133 45.455 0.00 0.00 0.00 4.24
373 374 2.866762 AGAGACGAACACAGAAAACAGC 59.133 45.455 0.00 0.00 0.00 4.40
374 375 3.865745 ACAGAGACGAACACAGAAAACAG 59.134 43.478 0.00 0.00 0.00 3.16
375 376 3.857052 ACAGAGACGAACACAGAAAACA 58.143 40.909 0.00 0.00 0.00 2.83
376 377 5.041940 AGTACAGAGACGAACACAGAAAAC 58.958 41.667 0.00 0.00 0.00 2.43
377 378 5.258456 AGTACAGAGACGAACACAGAAAA 57.742 39.130 0.00 0.00 0.00 2.29
378 379 4.913335 AGTACAGAGACGAACACAGAAA 57.087 40.909 0.00 0.00 0.00 2.52
379 380 4.499188 CCAAGTACAGAGACGAACACAGAA 60.499 45.833 0.00 0.00 0.00 3.02
380 381 3.004419 CCAAGTACAGAGACGAACACAGA 59.996 47.826 0.00 0.00 0.00 3.41
381 382 3.243434 ACCAAGTACAGAGACGAACACAG 60.243 47.826 0.00 0.00 0.00 3.66
382 383 2.691526 ACCAAGTACAGAGACGAACACA 59.308 45.455 0.00 0.00 0.00 3.72
383 384 3.050619 CACCAAGTACAGAGACGAACAC 58.949 50.000 0.00 0.00 0.00 3.32
384 385 2.545113 GCACCAAGTACAGAGACGAACA 60.545 50.000 0.00 0.00 0.00 3.18
385 386 2.059541 GCACCAAGTACAGAGACGAAC 58.940 52.381 0.00 0.00 0.00 3.95
386 387 1.961394 AGCACCAAGTACAGAGACGAA 59.039 47.619 0.00 0.00 0.00 3.85
387 388 1.617322 AGCACCAAGTACAGAGACGA 58.383 50.000 0.00 0.00 0.00 4.20
388 389 2.440539 AAGCACCAAGTACAGAGACG 57.559 50.000 0.00 0.00 0.00 4.18
389 390 5.238583 ACAATAAGCACCAAGTACAGAGAC 58.761 41.667 0.00 0.00 0.00 3.36
390 391 5.483685 ACAATAAGCACCAAGTACAGAGA 57.516 39.130 0.00 0.00 0.00 3.10
391 392 7.011482 GGATTACAATAAGCACCAAGTACAGAG 59.989 40.741 0.00 0.00 0.00 3.35
392 393 6.821665 GGATTACAATAAGCACCAAGTACAGA 59.178 38.462 0.00 0.00 0.00 3.41
393 394 6.823689 AGGATTACAATAAGCACCAAGTACAG 59.176 38.462 0.00 0.00 0.00 2.74
394 395 6.597672 CAGGATTACAATAAGCACCAAGTACA 59.402 38.462 0.00 0.00 0.00 2.90
395 396 6.038271 CCAGGATTACAATAAGCACCAAGTAC 59.962 42.308 0.00 0.00 0.00 2.73
396 397 6.119536 CCAGGATTACAATAAGCACCAAGTA 58.880 40.000 0.00 0.00 0.00 2.24
397 398 4.949856 CCAGGATTACAATAAGCACCAAGT 59.050 41.667 0.00 0.00 0.00 3.16
398 399 4.202050 GCCAGGATTACAATAAGCACCAAG 60.202 45.833 0.00 0.00 0.00 3.61
399 400 3.699038 GCCAGGATTACAATAAGCACCAA 59.301 43.478 0.00 0.00 0.00 3.67
400 401 3.287222 GCCAGGATTACAATAAGCACCA 58.713 45.455 0.00 0.00 0.00 4.17
401 402 2.623416 GGCCAGGATTACAATAAGCACC 59.377 50.000 0.00 0.00 0.00 5.01
402 403 2.290641 CGGCCAGGATTACAATAAGCAC 59.709 50.000 2.24 0.00 0.00 4.40
403 404 2.571212 CGGCCAGGATTACAATAAGCA 58.429 47.619 2.24 0.00 0.00 3.91
404 405 1.880027 CCGGCCAGGATTACAATAAGC 59.120 52.381 2.24 0.00 45.00 3.09
405 406 3.208747 ACCGGCCAGGATTACAATAAG 57.791 47.619 18.74 0.00 45.00 1.73
406 407 3.054287 TCAACCGGCCAGGATTACAATAA 60.054 43.478 18.74 0.00 45.00 1.40
407 408 2.506231 TCAACCGGCCAGGATTACAATA 59.494 45.455 18.74 0.00 45.00 1.90
408 409 1.283613 TCAACCGGCCAGGATTACAAT 59.716 47.619 18.74 0.00 45.00 2.71
409 410 0.693622 TCAACCGGCCAGGATTACAA 59.306 50.000 18.74 0.00 45.00 2.41
410 411 0.916086 ATCAACCGGCCAGGATTACA 59.084 50.000 18.74 0.75 45.00 2.41
411 412 1.308998 CATCAACCGGCCAGGATTAC 58.691 55.000 18.74 0.00 45.00 1.89
412 413 0.182537 CCATCAACCGGCCAGGATTA 59.817 55.000 18.74 1.01 45.00 1.75
413 414 1.076777 CCATCAACCGGCCAGGATT 60.077 57.895 18.74 7.79 45.00 3.01
414 415 2.597340 CCATCAACCGGCCAGGAT 59.403 61.111 18.74 5.67 45.00 3.24
415 416 4.424711 GCCATCAACCGGCCAGGA 62.425 66.667 18.74 3.02 44.22 3.86
421 422 3.866883 ATTAACAAAGCCATCAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
422 423 4.804108 TGAATTAACAAAGCCATCAACCG 58.196 39.130 0.00 0.00 0.00 4.44
423 424 7.120789 CTTTGAATTAACAAAGCCATCAACC 57.879 36.000 6.67 0.00 46.05 3.77
433 434 2.630580 AGCCCGGCTTTGAATTAACAAA 59.369 40.909 5.94 0.00 33.89 2.83
434 435 2.230266 GAGCCCGGCTTTGAATTAACAA 59.770 45.455 14.70 0.00 39.88 2.83
435 436 1.816224 GAGCCCGGCTTTGAATTAACA 59.184 47.619 14.70 0.00 39.88 2.41
436 437 1.202143 CGAGCCCGGCTTTGAATTAAC 60.202 52.381 14.70 0.00 39.88 2.01
437 438 1.091537 CGAGCCCGGCTTTGAATTAA 58.908 50.000 14.70 0.00 39.88 1.40
438 439 0.035820 ACGAGCCCGGCTTTGAATTA 60.036 50.000 14.70 0.00 39.88 1.40
439 440 1.303317 ACGAGCCCGGCTTTGAATT 60.303 52.632 14.70 0.00 39.88 2.17
440 441 1.745489 GACGAGCCCGGCTTTGAAT 60.745 57.895 14.70 0.00 41.56 2.57
441 442 2.358247 GACGAGCCCGGCTTTGAA 60.358 61.111 14.70 0.00 41.56 2.69
442 443 4.388499 GGACGAGCCCGGCTTTGA 62.388 66.667 14.70 0.00 44.92 2.69
443 444 4.394712 AGGACGAGCCCGGCTTTG 62.395 66.667 14.70 12.08 44.92 2.77
444 445 4.394712 CAGGACGAGCCCGGCTTT 62.395 66.667 14.70 3.47 44.92 3.51
453 454 0.456995 GAACGAAGGCTCAGGACGAG 60.457 60.000 0.00 0.00 45.37 4.18
454 455 0.894184 AGAACGAAGGCTCAGGACGA 60.894 55.000 0.00 0.00 0.00 4.20
455 456 0.809385 TAGAACGAAGGCTCAGGACG 59.191 55.000 0.00 0.00 0.00 4.79
456 457 4.650754 TTATAGAACGAAGGCTCAGGAC 57.349 45.455 0.00 0.00 0.00 3.85
457 458 5.670792 TTTTATAGAACGAAGGCTCAGGA 57.329 39.130 0.00 0.00 0.00 3.86
458 459 6.927294 ATTTTTATAGAACGAAGGCTCAGG 57.073 37.500 0.00 0.00 0.00 3.86
459 460 9.046296 ACATATTTTTATAGAACGAAGGCTCAG 57.954 33.333 0.00 0.00 0.00 3.35
460 461 8.826710 CACATATTTTTATAGAACGAAGGCTCA 58.173 33.333 0.00 0.00 0.00 4.26
461 462 8.827677 ACACATATTTTTATAGAACGAAGGCTC 58.172 33.333 0.00 0.00 0.00 4.70
462 463 8.732746 ACACATATTTTTATAGAACGAAGGCT 57.267 30.769 0.00 0.00 0.00 4.58
463 464 8.068380 GGACACATATTTTTATAGAACGAAGGC 58.932 37.037 0.00 0.00 0.00 4.35
464 465 8.273557 CGGACACATATTTTTATAGAACGAAGG 58.726 37.037 0.00 0.00 0.00 3.46
465 466 7.792508 GCGGACACATATTTTTATAGAACGAAG 59.207 37.037 0.00 0.00 0.00 3.79
466 467 7.493320 AGCGGACACATATTTTTATAGAACGAA 59.507 33.333 0.00 0.00 0.00 3.85
467 468 6.982141 AGCGGACACATATTTTTATAGAACGA 59.018 34.615 0.00 0.00 0.00 3.85
468 469 7.173863 AGCGGACACATATTTTTATAGAACG 57.826 36.000 0.00 0.00 0.00 3.95
475 476 9.729023 CATCAATAAAGCGGACACATATTTTTA 57.271 29.630 0.00 0.00 0.00 1.52
476 477 8.465999 TCATCAATAAAGCGGACACATATTTTT 58.534 29.630 0.00 0.00 0.00 1.94
483 484 6.112734 ACTATTCATCAATAAAGCGGACACA 58.887 36.000 0.00 0.00 0.00 3.72
513 515 9.708222 GCGAATATCATGACAATTATCCAATAC 57.292 33.333 0.00 0.00 0.00 1.89
518 520 9.539825 AGATAGCGAATATCATGACAATTATCC 57.460 33.333 0.00 0.00 42.51 2.59
522 524 9.363763 CTGTAGATAGCGAATATCATGACAATT 57.636 33.333 0.00 0.60 42.51 2.32
524 526 8.110860 TCTGTAGATAGCGAATATCATGACAA 57.889 34.615 0.00 0.00 42.51 3.18
534 536 7.468141 TTGGACATATCTGTAGATAGCGAAT 57.532 36.000 7.57 0.00 40.04 3.34
536 538 6.264518 TGTTTGGACATATCTGTAGATAGCGA 59.735 38.462 7.57 0.00 40.04 4.93
537 539 6.447162 TGTTTGGACATATCTGTAGATAGCG 58.553 40.000 7.57 4.32 40.04 4.26
540 542 9.147732 AGTCATGTTTGGACATATCTGTAGATA 57.852 33.333 4.22 4.22 44.55 1.98
541 543 8.027524 AGTCATGTTTGGACATATCTGTAGAT 57.972 34.615 0.00 0.00 44.55 1.98
550 552 4.675933 CGTCCGTAGTCATGTTTGGACATA 60.676 45.833 18.27 0.00 44.55 2.29
592 594 3.490419 GCGTGATAGGGTATCTTCAACGT 60.490 47.826 0.00 0.00 34.98 3.99
630 639 0.541998 TGGAACCTCCTCAAGCGAGA 60.542 55.000 0.00 0.00 42.34 4.04
894 1533 2.414293 CGTGTTCGTTCTACTAGCAGCT 60.414 50.000 0.00 0.00 0.00 4.24
895 1534 1.912110 CGTGTTCGTTCTACTAGCAGC 59.088 52.381 0.00 0.00 0.00 5.25
897 1536 1.401931 GGCGTGTTCGTTCTACTAGCA 60.402 52.381 0.00 0.00 39.49 3.49
900 1539 2.153645 TCAGGCGTGTTCGTTCTACTA 58.846 47.619 6.26 0.00 39.49 1.82
901 1540 0.956633 TCAGGCGTGTTCGTTCTACT 59.043 50.000 6.26 0.00 39.49 2.57
902 1541 1.337821 CTCAGGCGTGTTCGTTCTAC 58.662 55.000 6.26 0.00 39.49 2.59
915 1554 1.427020 GTTGATTGCTCGCTCAGGC 59.573 57.895 0.00 0.00 0.00 4.85
918 1557 0.955428 GGTGGTTGATTGCTCGCTCA 60.955 55.000 0.00 0.00 0.00 4.26
919 1558 1.796796 GGTGGTTGATTGCTCGCTC 59.203 57.895 0.00 0.00 0.00 5.03
932 1571 2.094390 TCTTCGATCGATTTTCGGTGGT 60.094 45.455 20.18 0.00 40.88 4.16
938 1577 6.309251 AGTCTCTGTTTCTTCGATCGATTTTC 59.691 38.462 20.18 9.38 0.00 2.29
1080 1722 0.250124 TCACCACGAAGGCAACGAAT 60.250 50.000 9.97 0.00 43.14 3.34
1086 1728 4.308458 CCGGTCACCACGAAGGCA 62.308 66.667 0.00 0.00 43.14 4.75
1236 1878 9.403583 GGTTACTGGTTTATGAAATTAGGATCA 57.596 33.333 0.00 0.00 0.00 2.92
1237 1879 9.628500 AGGTTACTGGTTTATGAAATTAGGATC 57.372 33.333 0.00 0.00 0.00 3.36
1388 2037 7.863901 AGAACATAAGAGAGGCAGGTTATAT 57.136 36.000 0.00 0.00 0.00 0.86
1389 2038 7.676683 AAGAACATAAGAGAGGCAGGTTATA 57.323 36.000 0.00 0.00 0.00 0.98
1407 2056 6.824704 CCCCTCCGTAAACAAATATAAGAACA 59.175 38.462 0.00 0.00 0.00 3.18
1408 2057 7.049754 TCCCCTCCGTAAACAAATATAAGAAC 58.950 38.462 0.00 0.00 0.00 3.01
1409 2058 7.092757 ACTCCCCTCCGTAAACAAATATAAGAA 60.093 37.037 0.00 0.00 0.00 2.52
1410 2059 6.384886 ACTCCCCTCCGTAAACAAATATAAGA 59.615 38.462 0.00 0.00 0.00 2.10
1411 2060 6.589135 ACTCCCCTCCGTAAACAAATATAAG 58.411 40.000 0.00 0.00 0.00 1.73
1412 2061 6.564557 ACTCCCCTCCGTAAACAAATATAA 57.435 37.500 0.00 0.00 0.00 0.98
1413 2062 7.860649 ATACTCCCCTCCGTAAACAAATATA 57.139 36.000 0.00 0.00 0.00 0.86
1414 2063 6.758806 ATACTCCCCTCCGTAAACAAATAT 57.241 37.500 0.00 0.00 0.00 1.28
1415 2064 7.290714 ACATATACTCCCCTCCGTAAACAAATA 59.709 37.037 0.00 0.00 0.00 1.40
1416 2065 6.100714 ACATATACTCCCCTCCGTAAACAAAT 59.899 38.462 0.00 0.00 0.00 2.32
1417 2066 5.426185 ACATATACTCCCCTCCGTAAACAAA 59.574 40.000 0.00 0.00 0.00 2.83
1418 2067 4.964262 ACATATACTCCCCTCCGTAAACAA 59.036 41.667 0.00 0.00 0.00 2.83
1419 2068 4.549668 ACATATACTCCCCTCCGTAAACA 58.450 43.478 0.00 0.00 0.00 2.83
1420 2069 5.541953 AACATATACTCCCCTCCGTAAAC 57.458 43.478 0.00 0.00 0.00 2.01
1421 2070 5.221303 CGAAACATATACTCCCCTCCGTAAA 60.221 44.000 0.00 0.00 0.00 2.01
1422 2071 4.279169 CGAAACATATACTCCCCTCCGTAA 59.721 45.833 0.00 0.00 0.00 3.18
1423 2072 3.822735 CGAAACATATACTCCCCTCCGTA 59.177 47.826 0.00 0.00 0.00 4.02
1424 2073 2.626743 CGAAACATATACTCCCCTCCGT 59.373 50.000 0.00 0.00 0.00 4.69
1425 2074 2.889045 TCGAAACATATACTCCCCTCCG 59.111 50.000 0.00 0.00 0.00 4.63
1426 2075 4.527038 TCATCGAAACATATACTCCCCTCC 59.473 45.833 0.00 0.00 0.00 4.30
1427 2076 5.471257 GTCATCGAAACATATACTCCCCTC 58.529 45.833 0.00 0.00 0.00 4.30
1428 2077 4.283722 GGTCATCGAAACATATACTCCCCT 59.716 45.833 0.00 0.00 0.00 4.79
1429 2078 4.562963 GGGTCATCGAAACATATACTCCCC 60.563 50.000 0.00 0.00 0.00 4.81
1430 2079 4.283722 AGGGTCATCGAAACATATACTCCC 59.716 45.833 0.00 0.00 0.00 4.30
1431 2080 5.010719 TCAGGGTCATCGAAACATATACTCC 59.989 44.000 0.00 0.00 0.00 3.85
1432 2081 6.085555 TCAGGGTCATCGAAACATATACTC 57.914 41.667 0.00 0.00 0.00 2.59
1433 2082 6.479972 TTCAGGGTCATCGAAACATATACT 57.520 37.500 0.00 0.00 0.00 2.12
1434 2083 6.945072 GTTTCAGGGTCATCGAAACATATAC 58.055 40.000 8.86 0.00 44.98 1.47
1440 2089 3.139077 ACTGTTTCAGGGTCATCGAAAC 58.861 45.455 7.18 7.18 45.55 2.78
1441 2090 3.485463 ACTGTTTCAGGGTCATCGAAA 57.515 42.857 0.00 0.00 35.51 3.46
1442 2091 3.830178 TCTACTGTTTCAGGGTCATCGAA 59.170 43.478 0.00 0.00 35.51 3.71
1443 2092 3.192844 GTCTACTGTTTCAGGGTCATCGA 59.807 47.826 0.00 0.00 35.51 3.59
1444 2093 3.512680 GTCTACTGTTTCAGGGTCATCG 58.487 50.000 1.90 0.00 35.51 3.84
1445 2094 3.515901 AGGTCTACTGTTTCAGGGTCATC 59.484 47.826 1.90 0.00 35.51 2.92
1446 2095 3.521727 AGGTCTACTGTTTCAGGGTCAT 58.478 45.455 1.90 0.00 35.51 3.06
1447 2096 2.972348 AGGTCTACTGTTTCAGGGTCA 58.028 47.619 1.90 0.00 35.51 4.02
1448 2097 5.678955 ATTAGGTCTACTGTTTCAGGGTC 57.321 43.478 1.90 0.00 35.51 4.46
1449 2098 6.262207 ACTATTAGGTCTACTGTTTCAGGGT 58.738 40.000 1.90 0.00 35.51 4.34
1450 2099 6.793505 ACTATTAGGTCTACTGTTTCAGGG 57.206 41.667 1.90 0.00 35.51 4.45
1451 2100 8.068892 AGAACTATTAGGTCTACTGTTTCAGG 57.931 38.462 9.57 0.00 41.28 3.86
1511 2160 6.101332 TGGTTTGATGCAAATTCTTATCTGC 58.899 36.000 0.00 0.00 35.74 4.26
1562 2211 3.876589 GAAGGCGTCGGTCTTGGCA 62.877 63.158 0.00 0.00 38.47 4.92
1566 2215 0.611340 ACTAGGAAGGCGTCGGTCTT 60.611 55.000 0.00 0.00 41.82 3.01
1568 2217 1.432657 GACTAGGAAGGCGTCGGTC 59.567 63.158 0.00 0.00 0.00 4.79
1569 2218 3.600843 GACTAGGAAGGCGTCGGT 58.399 61.111 0.00 0.00 0.00 4.69
1583 2271 3.239253 AACGGGTCCTTGGCGACT 61.239 61.111 0.00 0.00 33.07 4.18
1662 2350 1.398739 GATCTCAGAACGCGAGAGACA 59.601 52.381 15.93 0.00 42.56 3.41
1686 2374 3.706373 GGGGAGCGAGACAAGGCA 61.706 66.667 0.00 0.00 0.00 4.75
1709 2403 7.232188 AGACTATGGATCTACAACGGAATCTA 58.768 38.462 0.00 0.00 0.00 1.98
1718 2412 6.239430 GCAATCTGGAGACTATGGATCTACAA 60.239 42.308 0.00 0.00 36.57 2.41
1740 2434 3.507411 AGACAGGAAGGTAGTAGTGCAA 58.493 45.455 0.00 0.00 0.00 4.08
1805 2499 4.698780 TCGAGGTCAGACGAGAAAAGATAA 59.301 41.667 0.00 0.00 34.49 1.75
1965 2659 1.074889 ACGGGGCACACCTATCTTTTT 59.925 47.619 0.00 0.00 40.03 1.94
2037 2734 1.142748 CTCTGGCCGCGATCTTCTT 59.857 57.895 8.23 0.00 0.00 2.52
2048 2745 1.673665 CAAGTGCTCCACTCTGGCC 60.674 63.158 0.00 0.00 44.62 5.36
2162 2859 4.148838 CCTCGGAGATAAGGAACTCAGAT 58.851 47.826 6.58 0.00 36.93 2.90
2174 2871 1.048724 CCAAGCCCACCTCGGAGATA 61.049 60.000 6.58 0.00 36.56 1.98
2196 2893 0.041839 CGATGAGCAATGTAAGCCGC 60.042 55.000 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.