Multiple sequence alignment - TraesCS5D01G042100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G042100 chr5D 100.000 3464 0 0 1 3464 42054333 42050870 0.000000e+00 6397.0
1 TraesCS5D01G042100 chr5D 92.416 1635 71 23 819 2416 42016662 42018280 0.000000e+00 2283.0
2 TraesCS5D01G042100 chr5D 89.507 1420 108 21 399 1808 440159792 440161180 0.000000e+00 1759.0
3 TraesCS5D01G042100 chr5D 95.148 948 35 9 2410 3353 416149595 416150535 0.000000e+00 1485.0
4 TraesCS5D01G042100 chr5D 94.839 620 23 3 1806 2416 440161205 440161824 0.000000e+00 959.0
5 TraesCS5D01G042100 chr5D 79.915 473 79 9 262 732 42016164 42016622 1.990000e-87 333.0
6 TraesCS5D01G042100 chr5D 85.156 128 19 0 268 395 87534379 87534506 7.800000e-27 132.0
7 TraesCS5D01G042100 chr5B 88.482 2049 153 32 414 2416 535110725 535112736 0.000000e+00 2399.0
8 TraesCS5D01G042100 chr5B 91.088 1627 65 26 828 2416 36767815 36766231 0.000000e+00 2128.0
9 TraesCS5D01G042100 chr5B 88.020 1561 131 19 262 1808 36719764 36721282 0.000000e+00 1796.0
10 TraesCS5D01G042100 chr5B 95.968 620 16 3 1806 2416 36721307 36721926 0.000000e+00 998.0
11 TraesCS5D01G042100 chr5B 80.177 565 91 12 262 822 36771730 36771183 1.500000e-108 403.0
12 TraesCS5D01G042100 chr5A 90.069 1883 104 26 580 2416 555770320 555772165 0.000000e+00 2364.0
13 TraesCS5D01G042100 chr5A 88.133 1559 138 19 262 1808 30403806 30405329 0.000000e+00 1810.0
14 TraesCS5D01G042100 chr5A 94.839 620 23 4 1806 2416 30405354 30405973 0.000000e+00 959.0
15 TraesCS5D01G042100 chr5A 84.682 346 49 3 249 594 555765249 555765590 3.310000e-90 342.0
16 TraesCS5D01G042100 chr5A 86.508 126 17 0 270 395 565764187 565764062 4.660000e-29 139.0
17 TraesCS5D01G042100 chr1D 95.873 945 31 6 2410 3353 459853065 459852128 0.000000e+00 1522.0
18 TraesCS5D01G042100 chr1D 95.464 948 32 9 2410 3353 372855622 372856562 0.000000e+00 1502.0
19 TraesCS5D01G042100 chr1D 94.937 948 40 7 2410 3353 474867396 474868339 0.000000e+00 1478.0
20 TraesCS5D01G042100 chr2D 95.459 947 33 5 2410 3354 490665677 490664739 0.000000e+00 1502.0
21 TraesCS5D01G042100 chr2D 95.354 947 36 6 2410 3353 648441391 648442332 0.000000e+00 1498.0
22 TraesCS5D01G042100 chr3D 95.359 948 35 7 2410 3354 524729582 524730523 0.000000e+00 1498.0
23 TraesCS5D01G042100 chr3D 85.156 128 19 0 268 395 581040656 581040529 7.800000e-27 132.0
24 TraesCS5D01G042100 chr3D 86.066 122 17 0 268 389 589259290 589259411 7.800000e-27 132.0
25 TraesCS5D01G042100 chr6D 95.143 947 37 7 2410 3353 71059298 71060238 0.000000e+00 1485.0
26 TraesCS5D01G042100 chr6D 95.413 109 5 0 3356 3464 218402135 218402027 1.280000e-39 174.0
27 TraesCS5D01G042100 chr6D 95.413 109 5 0 3356 3464 225358146 225358038 1.280000e-39 174.0
28 TraesCS5D01G042100 chr4D 95.032 946 40 5 2410 3353 498527184 498526244 0.000000e+00 1480.0
29 TraesCS5D01G042100 chr4D 89.157 83 9 0 307 389 447147970 447148052 1.700000e-18 104.0
30 TraesCS5D01G042100 chrUn 95.413 109 5 0 3356 3464 27368064 27367956 1.280000e-39 174.0
31 TraesCS5D01G042100 chrUn 95.413 109 5 0 3356 3464 130402359 130402251 1.280000e-39 174.0
32 TraesCS5D01G042100 chrUn 95.413 109 5 0 3356 3464 300475437 300475329 1.280000e-39 174.0
33 TraesCS5D01G042100 chrUn 95.413 109 5 0 3356 3464 431781379 431781487 1.280000e-39 174.0
34 TraesCS5D01G042100 chrUn 85.156 128 19 0 268 395 392770448 392770321 7.800000e-27 132.0
35 TraesCS5D01G042100 chrUn 86.239 109 15 0 281 389 93165983 93166091 6.070000e-23 119.0
36 TraesCS5D01G042100 chr6A 95.413 109 5 0 3356 3464 57960556 57960448 1.280000e-39 174.0
37 TraesCS5D01G042100 chr4B 95.413 109 5 0 3356 3464 183461794 183461686 1.280000e-39 174.0
38 TraesCS5D01G042100 chr4B 95.413 109 5 0 3356 3464 658453239 658453347 1.280000e-39 174.0
39 TraesCS5D01G042100 chr7A 87.903 124 15 0 268 391 264091354 264091477 2.790000e-31 147.0
40 TraesCS5D01G042100 chr7D 86.885 122 16 0 268 389 516223008 516223129 1.680000e-28 137.0
41 TraesCS5D01G042100 chr2A 86.885 122 16 0 268 389 335801835 335801956 1.680000e-28 137.0
42 TraesCS5D01G042100 chr2A 86.885 122 16 0 268 389 335818600 335818721 1.680000e-28 137.0
43 TraesCS5D01G042100 chr1A 85.938 128 18 0 268 395 554464480 554464353 1.680000e-28 137.0
44 TraesCS5D01G042100 chr1A 84.906 106 16 0 268 373 532087226 532087121 1.310000e-19 108.0
45 TraesCS5D01G042100 chr1A 89.041 73 8 0 268 340 554465010 554464938 1.320000e-14 91.6
46 TraesCS5D01G042100 chr7B 86.066 122 17 0 268 389 622433732 622433853 7.800000e-27 132.0
47 TraesCS5D01G042100 chr7B 86.066 122 17 0 268 389 663095187 663095308 7.800000e-27 132.0
48 TraesCS5D01G042100 chr1B 85.156 128 19 0 268 395 673308534 673308407 7.800000e-27 132.0
49 TraesCS5D01G042100 chr1B 85.246 122 18 0 268 389 633735234 633735355 3.630000e-25 126.0
50 TraesCS5D01G042100 chr4A 84.426 122 19 0 268 389 310779837 310779958 1.690000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G042100 chr5D 42050870 42054333 3463 True 6397.0 6397 100.0000 1 3464 1 chr5D.!!$R1 3463
1 TraesCS5D01G042100 chr5D 416149595 416150535 940 False 1485.0 1485 95.1480 2410 3353 1 chr5D.!!$F2 943
2 TraesCS5D01G042100 chr5D 440159792 440161824 2032 False 1359.0 1759 92.1730 399 2416 2 chr5D.!!$F4 2017
3 TraesCS5D01G042100 chr5D 42016164 42018280 2116 False 1308.0 2283 86.1655 262 2416 2 chr5D.!!$F3 2154
4 TraesCS5D01G042100 chr5B 535110725 535112736 2011 False 2399.0 2399 88.4820 414 2416 1 chr5B.!!$F1 2002
5 TraesCS5D01G042100 chr5B 36719764 36721926 2162 False 1397.0 1796 91.9940 262 2416 2 chr5B.!!$F2 2154
6 TraesCS5D01G042100 chr5B 36766231 36771730 5499 True 1265.5 2128 85.6325 262 2416 2 chr5B.!!$R1 2154
7 TraesCS5D01G042100 chr5A 555770320 555772165 1845 False 2364.0 2364 90.0690 580 2416 1 chr5A.!!$F2 1836
8 TraesCS5D01G042100 chr5A 30403806 30405973 2167 False 1384.5 1810 91.4860 262 2416 2 chr5A.!!$F3 2154
9 TraesCS5D01G042100 chr1D 459852128 459853065 937 True 1522.0 1522 95.8730 2410 3353 1 chr1D.!!$R1 943
10 TraesCS5D01G042100 chr1D 372855622 372856562 940 False 1502.0 1502 95.4640 2410 3353 1 chr1D.!!$F1 943
11 TraesCS5D01G042100 chr1D 474867396 474868339 943 False 1478.0 1478 94.9370 2410 3353 1 chr1D.!!$F2 943
12 TraesCS5D01G042100 chr2D 490664739 490665677 938 True 1502.0 1502 95.4590 2410 3354 1 chr2D.!!$R1 944
13 TraesCS5D01G042100 chr2D 648441391 648442332 941 False 1498.0 1498 95.3540 2410 3353 1 chr2D.!!$F1 943
14 TraesCS5D01G042100 chr3D 524729582 524730523 941 False 1498.0 1498 95.3590 2410 3354 1 chr3D.!!$F1 944
15 TraesCS5D01G042100 chr6D 71059298 71060238 940 False 1485.0 1485 95.1430 2410 3353 1 chr6D.!!$F1 943
16 TraesCS5D01G042100 chr4D 498526244 498527184 940 True 1480.0 1480 95.0320 2410 3353 1 chr4D.!!$R1 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 500 0.103208 CGTCCTTGCGCCTCTTCTAT 59.897 55.0 4.18 0.0 0.0 1.98 F
1618 5030 0.536260 TGTGCTTGTTTTTGCTGGCT 59.464 45.0 0.00 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2347 5827 0.038744 CCCTTCTGCAACATCTGGGT 59.961 55.0 0.0 0.0 0.00 4.51 R
3416 6908 0.391661 GCGTCTCCATTCTTCTGGCA 60.392 55.0 0.0 0.0 36.16 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.992664 AGCATCTTTGTCTACCTCATATCT 57.007 37.500 0.00 0.00 0.00 1.98
25 26 8.484214 AAGCATCTTTGTCTACCTCATATCTA 57.516 34.615 0.00 0.00 0.00 1.98
26 27 8.484214 AGCATCTTTGTCTACCTCATATCTAA 57.516 34.615 0.00 0.00 0.00 2.10
27 28 9.099071 AGCATCTTTGTCTACCTCATATCTAAT 57.901 33.333 0.00 0.00 0.00 1.73
28 29 9.717942 GCATCTTTGTCTACCTCATATCTAATT 57.282 33.333 0.00 0.00 0.00 1.40
34 35 9.998106 TTGTCTACCTCATATCTAATTTTAGCC 57.002 33.333 0.00 0.00 0.00 3.93
35 36 9.154632 TGTCTACCTCATATCTAATTTTAGCCA 57.845 33.333 0.00 0.00 0.00 4.75
36 37 9.998106 GTCTACCTCATATCTAATTTTAGCCAA 57.002 33.333 0.00 0.00 0.00 4.52
69 70 9.985730 AAAGAATTTGCATAAGATGTTTTGAGA 57.014 25.926 0.00 0.00 36.60 3.27
70 71 9.985730 AAGAATTTGCATAAGATGTTTTGAGAA 57.014 25.926 0.00 0.00 0.00 2.87
71 72 9.985730 AGAATTTGCATAAGATGTTTTGAGAAA 57.014 25.926 0.00 0.00 0.00 2.52
73 74 9.768662 AATTTGCATAAGATGTTTTGAGAAACT 57.231 25.926 0.00 0.00 44.33 2.66
74 75 9.768662 ATTTGCATAAGATGTTTTGAGAAACTT 57.231 25.926 0.00 0.00 44.33 2.66
75 76 8.801715 TTGCATAAGATGTTTTGAGAAACTTC 57.198 30.769 8.86 8.86 44.33 3.01
86 87 8.345565 TGTTTTGAGAAACTTCTAGAAATGAGC 58.654 33.333 6.63 0.00 44.33 4.26
87 88 8.563732 GTTTTGAGAAACTTCTAGAAATGAGCT 58.436 33.333 6.63 0.00 41.50 4.09
88 89 7.664082 TTGAGAAACTTCTAGAAATGAGCTG 57.336 36.000 6.63 0.00 37.73 4.24
89 90 6.997655 TGAGAAACTTCTAGAAATGAGCTGA 58.002 36.000 6.63 0.00 37.73 4.26
90 91 7.445121 TGAGAAACTTCTAGAAATGAGCTGAA 58.555 34.615 6.63 0.00 37.73 3.02
91 92 7.933577 TGAGAAACTTCTAGAAATGAGCTGAAA 59.066 33.333 6.63 0.00 37.73 2.69
92 93 8.321650 AGAAACTTCTAGAAATGAGCTGAAAG 57.678 34.615 6.63 0.00 35.34 2.62
93 94 7.936301 AGAAACTTCTAGAAATGAGCTGAAAGT 59.064 33.333 6.63 0.00 35.34 2.66
94 95 9.209175 GAAACTTCTAGAAATGAGCTGAAAGTA 57.791 33.333 6.63 0.00 35.30 2.24
95 96 9.561069 AAACTTCTAGAAATGAGCTGAAAGTAA 57.439 29.630 6.63 0.00 35.30 2.24
96 97 8.770438 ACTTCTAGAAATGAGCTGAAAGTAAG 57.230 34.615 6.63 0.00 35.30 2.34
97 98 8.589338 ACTTCTAGAAATGAGCTGAAAGTAAGA 58.411 33.333 6.63 0.00 35.30 2.10
98 99 9.429359 CTTCTAGAAATGAGCTGAAAGTAAGAA 57.571 33.333 6.63 0.00 35.30 2.52
99 100 9.778741 TTCTAGAAATGAGCTGAAAGTAAGAAA 57.221 29.630 1.68 0.00 35.30 2.52
100 101 9.429359 TCTAGAAATGAGCTGAAAGTAAGAAAG 57.571 33.333 0.00 0.00 35.30 2.62
101 102 6.907741 AGAAATGAGCTGAAAGTAAGAAAGC 58.092 36.000 0.00 0.00 35.30 3.51
102 103 4.935885 ATGAGCTGAAAGTAAGAAAGCG 57.064 40.909 0.00 0.00 38.90 4.68
103 104 3.728845 TGAGCTGAAAGTAAGAAAGCGT 58.271 40.909 0.00 0.00 38.90 5.07
104 105 4.878439 TGAGCTGAAAGTAAGAAAGCGTA 58.122 39.130 0.00 0.00 38.90 4.42
105 106 5.479306 TGAGCTGAAAGTAAGAAAGCGTAT 58.521 37.500 0.00 0.00 38.90 3.06
106 107 5.348724 TGAGCTGAAAGTAAGAAAGCGTATG 59.651 40.000 0.00 0.00 38.90 2.39
107 108 5.238583 AGCTGAAAGTAAGAAAGCGTATGT 58.761 37.500 0.00 0.00 38.90 2.29
108 109 6.395629 AGCTGAAAGTAAGAAAGCGTATGTA 58.604 36.000 0.00 0.00 38.90 2.29
109 110 6.310711 AGCTGAAAGTAAGAAAGCGTATGTAC 59.689 38.462 0.00 0.00 38.90 2.90
110 111 6.455246 GCTGAAAGTAAGAAAGCGTATGTACC 60.455 42.308 0.00 0.00 35.30 3.34
111 112 6.457355 TGAAAGTAAGAAAGCGTATGTACCA 58.543 36.000 0.00 0.00 0.00 3.25
112 113 6.930164 TGAAAGTAAGAAAGCGTATGTACCAA 59.070 34.615 0.00 0.00 0.00 3.67
113 114 6.963049 AAGTAAGAAAGCGTATGTACCAAG 57.037 37.500 0.00 0.00 0.00 3.61
114 115 6.276832 AGTAAGAAAGCGTATGTACCAAGA 57.723 37.500 0.00 0.00 0.00 3.02
115 116 6.331061 AGTAAGAAAGCGTATGTACCAAGAG 58.669 40.000 0.00 0.00 0.00 2.85
116 117 3.522553 AGAAAGCGTATGTACCAAGAGC 58.477 45.455 0.00 0.00 0.00 4.09
117 118 3.195825 AGAAAGCGTATGTACCAAGAGCT 59.804 43.478 0.00 0.00 34.70 4.09
118 119 3.611766 AAGCGTATGTACCAAGAGCTT 57.388 42.857 6.80 6.80 38.45 3.74
119 120 3.611766 AGCGTATGTACCAAGAGCTTT 57.388 42.857 0.00 0.00 0.00 3.51
120 121 4.730949 AGCGTATGTACCAAGAGCTTTA 57.269 40.909 0.00 0.00 0.00 1.85
121 122 5.277857 AGCGTATGTACCAAGAGCTTTAT 57.722 39.130 0.00 0.00 0.00 1.40
122 123 5.290386 AGCGTATGTACCAAGAGCTTTATC 58.710 41.667 0.00 0.00 0.00 1.75
123 124 4.448060 GCGTATGTACCAAGAGCTTTATCC 59.552 45.833 0.00 0.00 0.00 2.59
124 125 4.989168 CGTATGTACCAAGAGCTTTATCCC 59.011 45.833 0.00 0.00 0.00 3.85
125 126 5.452776 CGTATGTACCAAGAGCTTTATCCCA 60.453 44.000 0.00 0.00 0.00 4.37
126 127 4.919774 TGTACCAAGAGCTTTATCCCAA 57.080 40.909 0.00 0.00 0.00 4.12
127 128 4.585879 TGTACCAAGAGCTTTATCCCAAC 58.414 43.478 0.00 0.00 0.00 3.77
128 129 2.711542 ACCAAGAGCTTTATCCCAACG 58.288 47.619 0.00 0.00 0.00 4.10
129 130 1.401905 CCAAGAGCTTTATCCCAACGC 59.598 52.381 0.00 0.00 0.00 4.84
130 131 2.359900 CAAGAGCTTTATCCCAACGCT 58.640 47.619 0.00 0.00 0.00 5.07
131 132 2.749621 CAAGAGCTTTATCCCAACGCTT 59.250 45.455 0.00 0.00 0.00 4.68
132 133 2.633488 AGAGCTTTATCCCAACGCTTC 58.367 47.619 0.00 0.00 0.00 3.86
133 134 1.327764 GAGCTTTATCCCAACGCTTCG 59.672 52.381 0.00 0.00 0.00 3.79
134 135 1.066430 AGCTTTATCCCAACGCTTCGA 60.066 47.619 0.00 0.00 0.00 3.71
135 136 1.940613 GCTTTATCCCAACGCTTCGAT 59.059 47.619 0.00 0.00 0.00 3.59
136 137 2.286418 GCTTTATCCCAACGCTTCGATG 60.286 50.000 0.00 0.00 0.00 3.84
137 138 1.295792 TTATCCCAACGCTTCGATGC 58.704 50.000 13.01 13.01 0.00 3.91
138 139 0.464036 TATCCCAACGCTTCGATGCT 59.536 50.000 19.63 5.72 0.00 3.79
139 140 1.091771 ATCCCAACGCTTCGATGCTG 61.092 55.000 19.63 15.16 0.00 4.41
140 141 2.034879 CCCAACGCTTCGATGCTGT 61.035 57.895 19.63 15.72 0.00 4.40
141 142 1.577328 CCCAACGCTTCGATGCTGTT 61.577 55.000 19.63 19.68 32.95 3.16
142 143 0.238289 CCAACGCTTCGATGCTGTTT 59.762 50.000 21.54 11.21 31.40 2.83
143 144 1.334960 CCAACGCTTCGATGCTGTTTT 60.335 47.619 21.54 9.36 31.40 2.43
144 145 2.095969 CCAACGCTTCGATGCTGTTTTA 60.096 45.455 21.54 0.00 31.40 1.52
145 146 3.426159 CCAACGCTTCGATGCTGTTTTAT 60.426 43.478 21.54 7.25 31.40 1.40
146 147 3.389687 ACGCTTCGATGCTGTTTTATG 57.610 42.857 19.63 5.55 0.00 1.90
147 148 2.104144 CGCTTCGATGCTGTTTTATGC 58.896 47.619 19.63 0.00 0.00 3.14
148 149 2.454055 GCTTCGATGCTGTTTTATGCC 58.546 47.619 15.51 0.00 0.00 4.40
149 150 2.098117 GCTTCGATGCTGTTTTATGCCT 59.902 45.455 15.51 0.00 0.00 4.75
150 151 3.428045 GCTTCGATGCTGTTTTATGCCTT 60.428 43.478 15.51 0.00 0.00 4.35
151 152 4.346129 CTTCGATGCTGTTTTATGCCTTC 58.654 43.478 0.00 0.00 0.00 3.46
152 153 3.342719 TCGATGCTGTTTTATGCCTTCA 58.657 40.909 0.00 0.00 0.00 3.02
153 154 3.755905 TCGATGCTGTTTTATGCCTTCAA 59.244 39.130 0.00 0.00 0.00 2.69
154 155 4.100529 CGATGCTGTTTTATGCCTTCAAG 58.899 43.478 0.00 0.00 0.00 3.02
155 156 3.940209 TGCTGTTTTATGCCTTCAAGG 57.060 42.857 0.00 0.00 38.80 3.61
156 157 3.230134 TGCTGTTTTATGCCTTCAAGGT 58.770 40.909 5.03 0.00 37.80 3.50
157 158 3.640967 TGCTGTTTTATGCCTTCAAGGTT 59.359 39.130 5.03 0.00 37.80 3.50
158 159 4.830046 TGCTGTTTTATGCCTTCAAGGTTA 59.170 37.500 5.03 0.00 37.80 2.85
159 160 5.480073 TGCTGTTTTATGCCTTCAAGGTTAT 59.520 36.000 5.03 2.99 37.80 1.89
160 161 6.661377 TGCTGTTTTATGCCTTCAAGGTTATA 59.339 34.615 5.03 1.99 37.80 0.98
161 162 7.177568 TGCTGTTTTATGCCTTCAAGGTTATAA 59.822 33.333 5.03 8.07 37.80 0.98
162 163 8.032451 GCTGTTTTATGCCTTCAAGGTTATAAA 58.968 33.333 17.34 17.34 37.80 1.40
163 164 9.573133 CTGTTTTATGCCTTCAAGGTTATAAAG 57.427 33.333 19.05 10.56 37.58 1.85
164 165 9.084533 TGTTTTATGCCTTCAAGGTTATAAAGT 57.915 29.630 19.05 0.00 37.58 2.66
165 166 9.923143 GTTTTATGCCTTCAAGGTTATAAAGTT 57.077 29.630 19.05 0.00 37.58 2.66
167 168 9.528489 TTTATGCCTTCAAGGTTATAAAGTTCT 57.472 29.630 17.34 0.00 37.80 3.01
168 169 9.528489 TTATGCCTTCAAGGTTATAAAGTTCTT 57.472 29.630 5.03 0.00 37.80 2.52
169 170 7.214467 TGCCTTCAAGGTTATAAAGTTCTTG 57.786 36.000 5.03 10.41 37.80 3.02
170 171 7.001674 TGCCTTCAAGGTTATAAAGTTCTTGA 58.998 34.615 5.03 13.27 41.07 3.02
171 172 7.669722 TGCCTTCAAGGTTATAAAGTTCTTGAT 59.330 33.333 5.03 0.00 41.94 2.57
172 173 8.523658 GCCTTCAAGGTTATAAAGTTCTTGATT 58.476 33.333 5.03 0.00 41.94 2.57
198 199 8.815565 TTATTAAATTTAGTGATGAGGGTGCA 57.184 30.769 3.63 0.00 0.00 4.57
199 200 7.716799 ATTAAATTTAGTGATGAGGGTGCAA 57.283 32.000 0.00 0.00 0.00 4.08
200 201 7.531857 TTAAATTTAGTGATGAGGGTGCAAA 57.468 32.000 0.00 0.00 0.00 3.68
201 202 6.418057 AAATTTAGTGATGAGGGTGCAAAA 57.582 33.333 0.00 0.00 0.00 2.44
202 203 6.418057 AATTTAGTGATGAGGGTGCAAAAA 57.582 33.333 0.00 0.00 0.00 1.94
203 204 6.610075 ATTTAGTGATGAGGGTGCAAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
204 205 7.716799 ATTTAGTGATGAGGGTGCAAAAATA 57.283 32.000 0.00 0.00 0.00 1.40
205 206 7.531857 TTTAGTGATGAGGGTGCAAAAATAA 57.468 32.000 0.00 0.00 0.00 1.40
206 207 7.716799 TTAGTGATGAGGGTGCAAAAATAAT 57.283 32.000 0.00 0.00 0.00 1.28
207 208 6.610075 AGTGATGAGGGTGCAAAAATAATT 57.390 33.333 0.00 0.00 0.00 1.40
208 209 7.008021 AGTGATGAGGGTGCAAAAATAATTT 57.992 32.000 0.00 0.00 0.00 1.82
209 210 6.875195 AGTGATGAGGGTGCAAAAATAATTTG 59.125 34.615 0.00 0.00 0.00 2.32
210 211 6.092533 GTGATGAGGGTGCAAAAATAATTTGG 59.907 38.462 0.00 0.00 0.00 3.28
211 212 4.904241 TGAGGGTGCAAAAATAATTTGGG 58.096 39.130 0.00 0.00 0.00 4.12
212 213 4.594920 TGAGGGTGCAAAAATAATTTGGGA 59.405 37.500 0.00 0.00 0.00 4.37
213 214 5.072329 TGAGGGTGCAAAAATAATTTGGGAA 59.928 36.000 0.00 0.00 0.00 3.97
214 215 5.312895 AGGGTGCAAAAATAATTTGGGAAC 58.687 37.500 0.00 0.00 27.18 3.62
215 216 5.066593 GGGTGCAAAAATAATTTGGGAACA 58.933 37.500 0.00 0.00 29.48 3.18
216 217 5.049060 GGGTGCAAAAATAATTTGGGAACAC 60.049 40.000 0.00 3.01 42.67 3.32
217 218 5.529060 GGTGCAAAAATAATTTGGGAACACA 59.471 36.000 0.00 0.00 42.67 3.72
218 219 6.206438 GGTGCAAAAATAATTTGGGAACACAT 59.794 34.615 0.00 0.00 42.67 3.21
219 220 7.255416 GGTGCAAAAATAATTTGGGAACACATT 60.255 33.333 0.00 0.00 42.97 2.71
220 221 8.778358 GTGCAAAAATAATTTGGGAACACATTA 58.222 29.630 0.00 0.00 44.54 1.90
221 222 8.997323 TGCAAAAATAATTTGGGAACACATTAG 58.003 29.630 3.41 0.00 43.90 1.73
222 223 8.998377 GCAAAAATAATTTGGGAACACATTAGT 58.002 29.630 3.41 0.00 43.90 2.24
233 234 9.555727 TTGGGAACACATTAGTTAATATCTAGC 57.444 33.333 0.00 0.00 42.67 3.42
234 235 8.710239 TGGGAACACATTAGTTAATATCTAGCA 58.290 33.333 0.00 0.00 33.40 3.49
235 236 8.989980 GGGAACACATTAGTTAATATCTAGCAC 58.010 37.037 0.00 0.00 0.00 4.40
236 237 9.542462 GGAACACATTAGTTAATATCTAGCACA 57.458 33.333 0.00 0.00 0.00 4.57
239 240 9.751542 ACACATTAGTTAATATCTAGCACAGTC 57.248 33.333 0.00 0.00 0.00 3.51
240 241 8.906693 CACATTAGTTAATATCTAGCACAGTCG 58.093 37.037 0.00 0.00 0.00 4.18
241 242 8.082852 ACATTAGTTAATATCTAGCACAGTCGG 58.917 37.037 0.00 0.00 0.00 4.79
242 243 4.872664 AGTTAATATCTAGCACAGTCGGC 58.127 43.478 0.00 0.00 0.00 5.54
243 244 4.585162 AGTTAATATCTAGCACAGTCGGCT 59.415 41.667 0.00 0.00 45.18 5.52
244 245 5.768662 AGTTAATATCTAGCACAGTCGGCTA 59.231 40.000 0.00 0.00 42.62 3.93
245 246 6.264744 AGTTAATATCTAGCACAGTCGGCTAA 59.735 38.462 0.00 0.00 42.80 3.09
246 247 5.531122 AATATCTAGCACAGTCGGCTAAA 57.469 39.130 0.00 0.00 42.80 1.85
247 248 3.887621 ATCTAGCACAGTCGGCTAAAA 57.112 42.857 0.00 0.00 42.80 1.52
248 249 2.955614 TCTAGCACAGTCGGCTAAAAC 58.044 47.619 0.00 0.00 42.80 2.43
249 250 2.297880 TCTAGCACAGTCGGCTAAAACA 59.702 45.455 0.00 0.00 42.80 2.83
250 251 2.185004 AGCACAGTCGGCTAAAACAT 57.815 45.000 0.00 0.00 40.47 2.71
251 252 1.806542 AGCACAGTCGGCTAAAACATG 59.193 47.619 0.00 0.00 40.47 3.21
252 253 1.135689 GCACAGTCGGCTAAAACATGG 60.136 52.381 0.00 0.00 0.00 3.66
253 254 1.135689 CACAGTCGGCTAAAACATGGC 60.136 52.381 0.00 0.00 34.16 4.40
256 257 2.874019 CGGCTAAAACATGGCGCA 59.126 55.556 10.83 0.00 44.46 6.09
257 258 1.514014 CGGCTAAAACATGGCGCAC 60.514 57.895 10.83 0.00 44.46 5.34
258 259 1.514014 GGCTAAAACATGGCGCACG 60.514 57.895 10.83 0.00 36.14 5.34
259 260 1.514014 GCTAAAACATGGCGCACGG 60.514 57.895 10.83 0.00 0.00 4.94
260 261 1.873165 CTAAAACATGGCGCACGGT 59.127 52.632 10.83 0.00 0.00 4.83
272 273 2.533266 GCGCACGGTACATAAACTACT 58.467 47.619 0.30 0.00 0.00 2.57
277 278 6.129352 GCGCACGGTACATAAACTACTTATAC 60.129 42.308 0.30 0.00 0.00 1.47
278 279 6.912051 CGCACGGTACATAAACTACTTATACA 59.088 38.462 0.00 0.00 0.00 2.29
291 292 9.924650 AAACTACTTATACACTTTCAGTAGTGG 57.075 33.333 10.29 0.00 46.09 4.00
301 302 5.011586 ACTTTCAGTAGTGGTCCTCTCTAC 58.988 45.833 0.00 4.40 35.63 2.59
304 305 3.018149 CAGTAGTGGTCCTCTCTACACC 58.982 54.545 16.03 0.00 37.20 4.16
348 349 1.737236 GCACGATAACTGATGCACCAA 59.263 47.619 0.00 0.00 38.00 3.67
349 350 2.161410 GCACGATAACTGATGCACCAAA 59.839 45.455 0.00 0.00 38.00 3.28
351 352 3.684305 CACGATAACTGATGCACCAAAGA 59.316 43.478 0.00 0.00 0.00 2.52
353 354 4.572389 ACGATAACTGATGCACCAAAGATC 59.428 41.667 0.00 0.00 0.00 2.75
355 356 2.885135 ACTGATGCACCAAAGATCCA 57.115 45.000 0.00 0.00 0.00 3.41
363 364 2.357569 GCACCAAAGATCCATCCTTCCT 60.358 50.000 0.00 0.00 0.00 3.36
375 376 0.612174 TCCTTCCTGGTCCTCTCGTG 60.612 60.000 0.00 0.00 37.07 4.35
381 382 0.394488 CTGGTCCTCTCGTGCTAGGA 60.394 60.000 0.00 0.00 39.63 2.94
393 394 2.673368 CGTGCTAGGAAAAGGTCATGTC 59.327 50.000 0.00 0.00 0.00 3.06
396 397 3.274288 GCTAGGAAAAGGTCATGTCAGG 58.726 50.000 0.00 0.00 0.00 3.86
405 406 3.716195 CATGTCAGGCGGGGGTCA 61.716 66.667 0.00 0.00 0.00 4.02
423 424 1.838846 ATCCTCGTGCCATCCGGAT 60.839 57.895 12.38 12.38 0.00 4.18
454 455 2.556622 GTCACCACCCATCGACAAAATT 59.443 45.455 0.00 0.00 0.00 1.82
464 468 5.393962 CCATCGACAAAATTGAGAAAGACC 58.606 41.667 0.00 0.00 0.00 3.85
465 469 5.048782 CCATCGACAAAATTGAGAAAGACCA 60.049 40.000 0.00 0.00 0.00 4.02
466 470 5.418310 TCGACAAAATTGAGAAAGACCAC 57.582 39.130 0.00 0.00 0.00 4.16
492 497 2.095252 GTCGTCCTTGCGCCTCTTC 61.095 63.158 4.18 0.00 0.00 2.87
493 498 2.262915 CGTCCTTGCGCCTCTTCT 59.737 61.111 4.18 0.00 0.00 2.85
494 499 0.963856 TCGTCCTTGCGCCTCTTCTA 60.964 55.000 4.18 0.00 0.00 2.10
495 500 0.103208 CGTCCTTGCGCCTCTTCTAT 59.897 55.000 4.18 0.00 0.00 1.98
496 501 1.576356 GTCCTTGCGCCTCTTCTATG 58.424 55.000 4.18 0.00 0.00 2.23
500 505 1.590238 CTTGCGCCTCTTCTATGTTCG 59.410 52.381 4.18 0.00 0.00 3.95
568 573 0.745845 GCAGCAACCATCGACCATCT 60.746 55.000 0.00 0.00 0.00 2.90
578 583 2.913777 TCGACCATCTACGAACACAG 57.086 50.000 0.00 0.00 35.62 3.66
590 595 2.093658 ACGAACACAGACCACACTTCTT 60.094 45.455 0.00 0.00 0.00 2.52
721 728 4.708177 AGAGTTGCTCTTAAAAGACAGCA 58.292 39.130 3.31 3.31 37.60 4.41
736 743 0.668706 CAGCACAAGACGAGGGTGAG 60.669 60.000 0.00 0.00 34.52 3.51
739 746 2.266055 CAAGACGAGGGTGAGGCC 59.734 66.667 0.00 0.00 0.00 5.19
740 747 2.203788 AAGACGAGGGTGAGGCCA 60.204 61.111 5.01 0.00 39.65 5.36
741 748 2.286523 AAGACGAGGGTGAGGCCAG 61.287 63.158 5.01 0.00 39.65 4.85
742 749 2.680352 GACGAGGGTGAGGCCAGA 60.680 66.667 5.01 0.00 39.65 3.86
743 750 2.039624 ACGAGGGTGAGGCCAGAT 59.960 61.111 5.01 0.00 39.65 2.90
744 751 2.303549 GACGAGGGTGAGGCCAGATG 62.304 65.000 5.01 0.00 39.65 2.90
745 752 2.060383 CGAGGGTGAGGCCAGATGA 61.060 63.158 5.01 0.00 39.65 2.92
746 753 1.617018 CGAGGGTGAGGCCAGATGAA 61.617 60.000 5.01 0.00 39.65 2.57
747 754 0.620556 GAGGGTGAGGCCAGATGAAA 59.379 55.000 5.01 0.00 39.65 2.69
748 755 0.622665 AGGGTGAGGCCAGATGAAAG 59.377 55.000 5.01 0.00 39.65 2.62
749 756 0.620556 GGGTGAGGCCAGATGAAAGA 59.379 55.000 5.01 0.00 39.65 2.52
750 757 1.407989 GGGTGAGGCCAGATGAAAGAG 60.408 57.143 5.01 0.00 39.65 2.85
751 758 1.280421 GGTGAGGCCAGATGAAAGAGT 59.720 52.381 5.01 0.00 37.17 3.24
752 759 2.354259 GTGAGGCCAGATGAAAGAGTG 58.646 52.381 5.01 0.00 0.00 3.51
755 762 3.582647 TGAGGCCAGATGAAAGAGTGTAA 59.417 43.478 5.01 0.00 0.00 2.41
779 811 5.416952 AGATGGAGAAGCTTGGTATTGTTTG 59.583 40.000 2.10 0.00 0.00 2.93
793 825 1.993956 TGTTTGTCCTTCACATGGGG 58.006 50.000 0.00 0.00 33.90 4.96
822 854 3.302699 GCAAAATCGTACGACTACTGGAC 59.697 47.826 22.14 1.92 0.00 4.02
826 866 2.976589 TCGTACGACTACTGGACATCA 58.023 47.619 15.28 0.00 0.00 3.07
837 4232 4.307032 ACTGGACATCATAGCAAAAGGT 57.693 40.909 0.00 0.00 0.00 3.50
957 4365 1.356624 CATCGCCAATCGCTTTCCC 59.643 57.895 0.00 0.00 38.27 3.97
1391 4803 1.019278 TTCGACGAAATGCTGAGCCC 61.019 55.000 8.05 0.00 0.00 5.19
1504 4916 0.743688 CCTCATGCTCTCGTACAGCT 59.256 55.000 5.40 0.00 37.79 4.24
1617 5029 1.585297 ATGTGCTTGTTTTTGCTGGC 58.415 45.000 0.00 0.00 0.00 4.85
1618 5030 0.536260 TGTGCTTGTTTTTGCTGGCT 59.464 45.000 0.00 0.00 0.00 4.75
1673 5085 3.222354 GACGTGTTGGGGTCGAGCT 62.222 63.158 15.18 0.00 0.00 4.09
1828 5267 2.597510 AGGTGCGGGGTTTGCTTC 60.598 61.111 0.00 0.00 0.00 3.86
1970 5409 2.030274 GGAAAAGGTTCCGTGTTGATGG 60.030 50.000 0.00 0.00 44.01 3.51
1972 5411 0.893727 AAGGTTCCGTGTTGATGGGC 60.894 55.000 0.00 0.00 0.00 5.36
1973 5412 1.602323 GGTTCCGTGTTGATGGGCA 60.602 57.895 0.00 0.00 0.00 5.36
2011 5491 2.199208 TCTGCTTGAATGGGAGGATGA 58.801 47.619 0.00 0.00 0.00 2.92
2013 5493 1.918262 TGCTTGAATGGGAGGATGACT 59.082 47.619 0.00 0.00 0.00 3.41
2177 5657 3.482722 CTGCAAGCCAAACATAGTCAG 57.517 47.619 0.00 0.00 0.00 3.51
2230 5710 2.431454 CTGGGAAAACTTCAGAGGCTC 58.569 52.381 6.34 6.34 0.00 4.70
2347 5827 7.327975 ACTAAAGGAATCATGTGATGTCGTTA 58.672 34.615 0.00 1.66 34.49 3.18
2470 5950 4.375606 CGCTTAAAGTTTTGTGACGATCGA 60.376 41.667 24.34 0.00 0.00 3.59
2483 5963 9.738832 TTTGTGACGATCGATATTATGAGTTTA 57.261 29.630 24.34 0.00 0.00 2.01
3354 6846 3.637911 ATTACTGCGTTCCCCAACATA 57.362 42.857 0.00 0.00 32.14 2.29
3355 6847 2.684001 TACTGCGTTCCCCAACATAG 57.316 50.000 0.00 0.00 32.14 2.23
3356 6848 0.035439 ACTGCGTTCCCCAACATAGG 60.035 55.000 0.00 0.00 32.14 2.57
3366 6858 2.169832 CCAACATAGGGGACATAGCG 57.830 55.000 0.00 0.00 0.00 4.26
3367 6859 1.691976 CCAACATAGGGGACATAGCGA 59.308 52.381 0.00 0.00 0.00 4.93
3368 6860 2.303022 CCAACATAGGGGACATAGCGAT 59.697 50.000 0.00 0.00 0.00 4.58
3369 6861 3.513912 CCAACATAGGGGACATAGCGATA 59.486 47.826 0.00 0.00 0.00 2.92
3370 6862 4.382040 CCAACATAGGGGACATAGCGATAG 60.382 50.000 0.00 0.00 0.00 2.08
3371 6863 4.048970 ACATAGGGGACATAGCGATAGT 57.951 45.455 0.00 0.00 39.35 2.12
3372 6864 5.188988 ACATAGGGGACATAGCGATAGTA 57.811 43.478 0.00 0.00 39.35 1.82
3373 6865 5.767670 ACATAGGGGACATAGCGATAGTAT 58.232 41.667 0.00 0.00 39.35 2.12
3374 6866 5.594725 ACATAGGGGACATAGCGATAGTATG 59.405 44.000 0.00 0.00 36.67 2.39
3375 6867 3.366396 AGGGGACATAGCGATAGTATGG 58.634 50.000 0.00 0.00 35.68 2.74
3376 6868 3.011369 AGGGGACATAGCGATAGTATGGA 59.989 47.826 0.00 0.00 35.68 3.41
3377 6869 3.961408 GGGGACATAGCGATAGTATGGAT 59.039 47.826 0.00 0.00 35.68 3.41
3378 6870 5.103643 AGGGGACATAGCGATAGTATGGATA 60.104 44.000 0.00 0.00 35.68 2.59
3379 6871 5.597182 GGGGACATAGCGATAGTATGGATAA 59.403 44.000 0.00 0.00 35.68 1.75
3380 6872 6.461231 GGGGACATAGCGATAGTATGGATAAC 60.461 46.154 0.00 0.00 35.68 1.89
3381 6873 6.461231 GGGACATAGCGATAGTATGGATAACC 60.461 46.154 0.00 1.05 35.68 2.85
3382 6874 6.096423 GGACATAGCGATAGTATGGATAACCA 59.904 42.308 0.00 0.00 45.09 3.67
3383 6875 7.363530 GGACATAGCGATAGTATGGATAACCAA 60.364 40.741 0.00 0.00 44.47 3.67
3384 6876 7.548097 ACATAGCGATAGTATGGATAACCAAG 58.452 38.462 0.00 0.00 44.47 3.61
3385 6877 4.822026 AGCGATAGTATGGATAACCAAGC 58.178 43.478 0.00 0.00 44.47 4.01
3386 6878 4.528596 AGCGATAGTATGGATAACCAAGCT 59.471 41.667 0.00 0.04 44.47 3.74
3387 6879 5.012148 AGCGATAGTATGGATAACCAAGCTT 59.988 40.000 0.00 0.00 44.47 3.74
3388 6880 5.701290 GCGATAGTATGGATAACCAAGCTTT 59.299 40.000 0.00 0.00 44.47 3.51
3389 6881 6.347725 GCGATAGTATGGATAACCAAGCTTTG 60.348 42.308 0.00 0.00 44.47 2.77
3390 6882 9.621977 GCGATAGTATGGATAACCAAGCTTTGC 62.622 44.444 0.00 0.00 44.47 3.68
3393 6885 3.658757 TGGATAACCAAGCTTTGCAAC 57.341 42.857 0.00 0.00 43.91 4.17
3394 6886 2.298729 TGGATAACCAAGCTTTGCAACC 59.701 45.455 0.00 0.00 43.91 3.77
3395 6887 2.562738 GGATAACCAAGCTTTGCAACCT 59.437 45.455 0.00 0.00 35.97 3.50
3396 6888 3.367395 GGATAACCAAGCTTTGCAACCTC 60.367 47.826 0.00 0.00 35.97 3.85
3397 6889 1.484038 AACCAAGCTTTGCAACCTCA 58.516 45.000 0.00 0.00 0.00 3.86
3398 6890 1.708341 ACCAAGCTTTGCAACCTCAT 58.292 45.000 0.00 0.00 0.00 2.90
3399 6891 2.041701 ACCAAGCTTTGCAACCTCATT 58.958 42.857 0.00 0.00 0.00 2.57
3400 6892 2.435437 ACCAAGCTTTGCAACCTCATTT 59.565 40.909 0.00 0.00 0.00 2.32
3401 6893 3.118298 ACCAAGCTTTGCAACCTCATTTT 60.118 39.130 0.00 0.00 0.00 1.82
3402 6894 3.878699 CCAAGCTTTGCAACCTCATTTTT 59.121 39.130 0.00 0.00 0.00 1.94
3426 6918 3.648339 GCAAACAAGATGCCAGAAGAA 57.352 42.857 0.00 0.00 37.85 2.52
3427 6919 4.184079 GCAAACAAGATGCCAGAAGAAT 57.816 40.909 0.00 0.00 37.85 2.40
3428 6920 3.924686 GCAAACAAGATGCCAGAAGAATG 59.075 43.478 0.00 0.00 37.85 2.67
3429 6921 4.491676 CAAACAAGATGCCAGAAGAATGG 58.508 43.478 0.00 0.00 43.72 3.16
3430 6922 3.726557 ACAAGATGCCAGAAGAATGGA 57.273 42.857 0.00 0.00 43.57 3.41
3431 6923 3.618351 ACAAGATGCCAGAAGAATGGAG 58.382 45.455 0.00 0.00 43.57 3.86
3432 6924 3.265221 ACAAGATGCCAGAAGAATGGAGA 59.735 43.478 0.00 0.00 43.57 3.71
3433 6925 3.557228 AGATGCCAGAAGAATGGAGAC 57.443 47.619 0.00 0.00 43.57 3.36
3434 6926 2.158986 AGATGCCAGAAGAATGGAGACG 60.159 50.000 0.00 0.00 43.57 4.18
3435 6927 0.391661 TGCCAGAAGAATGGAGACGC 60.392 55.000 0.00 0.00 43.57 5.19
3436 6928 0.391661 GCCAGAAGAATGGAGACGCA 60.392 55.000 0.00 0.00 43.57 5.24
3437 6929 1.945819 GCCAGAAGAATGGAGACGCAA 60.946 52.381 0.00 0.00 43.57 4.85
3438 6930 2.426522 CCAGAAGAATGGAGACGCAAA 58.573 47.619 0.00 0.00 43.57 3.68
3439 6931 2.813754 CCAGAAGAATGGAGACGCAAAA 59.186 45.455 0.00 0.00 43.57 2.44
3440 6932 3.441572 CCAGAAGAATGGAGACGCAAAAT 59.558 43.478 0.00 0.00 43.57 1.82
3441 6933 4.635765 CCAGAAGAATGGAGACGCAAAATA 59.364 41.667 0.00 0.00 43.57 1.40
3442 6934 5.297776 CCAGAAGAATGGAGACGCAAAATAT 59.702 40.000 0.00 0.00 43.57 1.28
3443 6935 6.183360 CCAGAAGAATGGAGACGCAAAATATT 60.183 38.462 0.00 0.00 43.57 1.28
3444 6936 7.012327 CCAGAAGAATGGAGACGCAAAATATTA 59.988 37.037 0.00 0.00 43.57 0.98
3445 6937 8.066595 CAGAAGAATGGAGACGCAAAATATTAG 58.933 37.037 0.00 0.00 0.00 1.73
3446 6938 7.770897 AGAAGAATGGAGACGCAAAATATTAGT 59.229 33.333 0.00 0.00 0.00 2.24
3447 6939 8.958119 AAGAATGGAGACGCAAAATATTAGTA 57.042 30.769 0.00 0.00 0.00 1.82
3448 6940 8.366671 AGAATGGAGACGCAAAATATTAGTAC 57.633 34.615 0.00 0.00 0.00 2.73
3449 6941 7.441458 AGAATGGAGACGCAAAATATTAGTACC 59.559 37.037 0.00 0.00 0.00 3.34
3450 6942 5.979993 TGGAGACGCAAAATATTAGTACCA 58.020 37.500 0.00 0.00 0.00 3.25
3451 6943 6.408035 TGGAGACGCAAAATATTAGTACCAA 58.592 36.000 0.00 0.00 0.00 3.67
3452 6944 7.051623 TGGAGACGCAAAATATTAGTACCAAT 58.948 34.615 0.00 0.00 0.00 3.16
3453 6945 7.225931 TGGAGACGCAAAATATTAGTACCAATC 59.774 37.037 0.00 0.00 0.00 2.67
3454 6946 7.441458 GGAGACGCAAAATATTAGTACCAATCT 59.559 37.037 0.00 0.00 0.00 2.40
3455 6947 8.732746 AGACGCAAAATATTAGTACCAATCTT 57.267 30.769 0.00 0.00 0.00 2.40
3456 6948 8.827677 AGACGCAAAATATTAGTACCAATCTTC 58.172 33.333 0.00 0.00 0.00 2.87
3457 6949 8.500753 ACGCAAAATATTAGTACCAATCTTCA 57.499 30.769 0.00 0.00 0.00 3.02
3458 6950 8.952278 ACGCAAAATATTAGTACCAATCTTCAA 58.048 29.630 0.00 0.00 0.00 2.69
3459 6951 9.438291 CGCAAAATATTAGTACCAATCTTCAAG 57.562 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.372260 AGATATGAGGTAGACAAAGATGCTT 57.628 36.000 0.00 0.00 0.00 3.91
1 2 6.992664 AGATATGAGGTAGACAAAGATGCT 57.007 37.500 0.00 0.00 0.00 3.79
2 3 9.717942 AATTAGATATGAGGTAGACAAAGATGC 57.282 33.333 0.00 0.00 0.00 3.91
8 9 9.998106 GGCTAAAATTAGATATGAGGTAGACAA 57.002 33.333 4.39 0.00 32.47 3.18
9 10 9.154632 TGGCTAAAATTAGATATGAGGTAGACA 57.845 33.333 4.39 0.00 32.47 3.41
10 11 9.998106 TTGGCTAAAATTAGATATGAGGTAGAC 57.002 33.333 4.39 0.00 32.47 2.59
43 44 9.985730 TCTCAAAACATCTTATGCAAATTCTTT 57.014 25.926 0.00 0.00 0.00 2.52
44 45 9.985730 TTCTCAAAACATCTTATGCAAATTCTT 57.014 25.926 0.00 0.00 0.00 2.52
45 46 9.985730 TTTCTCAAAACATCTTATGCAAATTCT 57.014 25.926 0.00 0.00 0.00 2.40
47 48 9.768662 AGTTTCTCAAAACATCTTATGCAAATT 57.231 25.926 0.00 0.00 45.94 1.82
48 49 9.768662 AAGTTTCTCAAAACATCTTATGCAAAT 57.231 25.926 0.00 0.00 45.94 2.32
49 50 9.248291 GAAGTTTCTCAAAACATCTTATGCAAA 57.752 29.630 0.00 0.00 45.94 3.68
50 51 8.632679 AGAAGTTTCTCAAAACATCTTATGCAA 58.367 29.630 0.00 0.00 46.07 4.08
51 52 8.169977 AGAAGTTTCTCAAAACATCTTATGCA 57.830 30.769 3.65 0.00 46.07 3.96
52 53 9.766277 CTAGAAGTTTCTCAAAACATCTTATGC 57.234 33.333 12.30 0.00 46.07 3.14
60 61 8.345565 GCTCATTTCTAGAAGTTTCTCAAAACA 58.654 33.333 5.12 0.00 45.94 2.83
61 62 8.563732 AGCTCATTTCTAGAAGTTTCTCAAAAC 58.436 33.333 5.12 0.00 44.24 2.43
62 63 8.562892 CAGCTCATTTCTAGAAGTTTCTCAAAA 58.437 33.333 5.12 1.70 38.70 2.44
63 64 7.933577 TCAGCTCATTTCTAGAAGTTTCTCAAA 59.066 33.333 5.12 0.42 38.70 2.69
64 65 7.445121 TCAGCTCATTTCTAGAAGTTTCTCAA 58.555 34.615 5.12 0.00 38.70 3.02
65 66 6.997655 TCAGCTCATTTCTAGAAGTTTCTCA 58.002 36.000 5.12 0.00 38.70 3.27
66 67 7.897575 TTCAGCTCATTTCTAGAAGTTTCTC 57.102 36.000 5.12 0.00 38.70 2.87
67 68 7.936301 ACTTTCAGCTCATTTCTAGAAGTTTCT 59.064 33.333 5.12 0.00 41.24 2.52
68 69 8.093659 ACTTTCAGCTCATTTCTAGAAGTTTC 57.906 34.615 5.12 0.00 0.00 2.78
69 70 9.561069 TTACTTTCAGCTCATTTCTAGAAGTTT 57.439 29.630 5.12 0.00 0.00 2.66
70 71 9.213799 CTTACTTTCAGCTCATTTCTAGAAGTT 57.786 33.333 5.12 0.00 0.00 2.66
71 72 8.589338 TCTTACTTTCAGCTCATTTCTAGAAGT 58.411 33.333 5.12 0.00 0.00 3.01
72 73 8.994429 TCTTACTTTCAGCTCATTTCTAGAAG 57.006 34.615 5.12 0.00 0.00 2.85
73 74 9.778741 TTTCTTACTTTCAGCTCATTTCTAGAA 57.221 29.630 0.00 0.00 0.00 2.10
74 75 9.429359 CTTTCTTACTTTCAGCTCATTTCTAGA 57.571 33.333 0.00 0.00 0.00 2.43
75 76 8.174422 GCTTTCTTACTTTCAGCTCATTTCTAG 58.826 37.037 0.00 0.00 0.00 2.43
76 77 7.148573 CGCTTTCTTACTTTCAGCTCATTTCTA 60.149 37.037 0.00 0.00 0.00 2.10
77 78 6.348050 CGCTTTCTTACTTTCAGCTCATTTCT 60.348 38.462 0.00 0.00 0.00 2.52
78 79 5.792468 CGCTTTCTTACTTTCAGCTCATTTC 59.208 40.000 0.00 0.00 0.00 2.17
79 80 5.239525 ACGCTTTCTTACTTTCAGCTCATTT 59.760 36.000 0.00 0.00 0.00 2.32
80 81 4.757149 ACGCTTTCTTACTTTCAGCTCATT 59.243 37.500 0.00 0.00 0.00 2.57
81 82 4.319177 ACGCTTTCTTACTTTCAGCTCAT 58.681 39.130 0.00 0.00 0.00 2.90
82 83 3.728845 ACGCTTTCTTACTTTCAGCTCA 58.271 40.909 0.00 0.00 0.00 4.26
83 84 5.348997 ACATACGCTTTCTTACTTTCAGCTC 59.651 40.000 0.00 0.00 0.00 4.09
84 85 5.238583 ACATACGCTTTCTTACTTTCAGCT 58.761 37.500 0.00 0.00 0.00 4.24
85 86 5.532025 ACATACGCTTTCTTACTTTCAGC 57.468 39.130 0.00 0.00 0.00 4.26
86 87 6.588756 TGGTACATACGCTTTCTTACTTTCAG 59.411 38.462 0.00 0.00 0.00 3.02
87 88 6.457355 TGGTACATACGCTTTCTTACTTTCA 58.543 36.000 0.00 0.00 0.00 2.69
88 89 6.956299 TGGTACATACGCTTTCTTACTTTC 57.044 37.500 0.00 0.00 0.00 2.62
89 90 7.156673 TCTTGGTACATACGCTTTCTTACTTT 58.843 34.615 0.00 0.00 39.30 2.66
90 91 6.694447 TCTTGGTACATACGCTTTCTTACTT 58.306 36.000 0.00 0.00 39.30 2.24
91 92 6.276832 TCTTGGTACATACGCTTTCTTACT 57.723 37.500 0.00 0.00 39.30 2.24
92 93 5.005490 GCTCTTGGTACATACGCTTTCTTAC 59.995 44.000 0.00 0.00 39.30 2.34
93 94 5.105473 AGCTCTTGGTACATACGCTTTCTTA 60.105 40.000 0.00 0.00 39.30 2.10
94 95 3.933332 GCTCTTGGTACATACGCTTTCTT 59.067 43.478 0.00 0.00 39.30 2.52
95 96 3.195825 AGCTCTTGGTACATACGCTTTCT 59.804 43.478 0.00 0.00 39.30 2.52
96 97 3.522553 AGCTCTTGGTACATACGCTTTC 58.477 45.455 0.00 0.00 39.30 2.62
97 98 3.611766 AGCTCTTGGTACATACGCTTT 57.388 42.857 0.00 0.00 39.30 3.51
98 99 3.611766 AAGCTCTTGGTACATACGCTT 57.388 42.857 0.00 0.00 39.30 4.68
99 100 3.611766 AAAGCTCTTGGTACATACGCT 57.388 42.857 0.00 0.00 39.30 5.07
100 101 4.448060 GGATAAAGCTCTTGGTACATACGC 59.552 45.833 0.00 0.00 39.30 4.42
101 102 4.989168 GGGATAAAGCTCTTGGTACATACG 59.011 45.833 0.00 0.00 39.30 3.06
102 103 5.925509 TGGGATAAAGCTCTTGGTACATAC 58.074 41.667 0.00 0.00 39.30 2.39
103 104 6.354130 GTTGGGATAAAGCTCTTGGTACATA 58.646 40.000 0.00 0.00 39.30 2.29
104 105 5.193679 GTTGGGATAAAGCTCTTGGTACAT 58.806 41.667 0.00 0.00 39.30 2.29
105 106 4.585879 GTTGGGATAAAGCTCTTGGTACA 58.414 43.478 0.00 0.00 0.00 2.90
106 107 3.621715 CGTTGGGATAAAGCTCTTGGTAC 59.378 47.826 0.00 0.00 0.00 3.34
107 108 3.869065 CGTTGGGATAAAGCTCTTGGTA 58.131 45.455 0.00 0.00 0.00 3.25
108 109 2.711542 CGTTGGGATAAAGCTCTTGGT 58.288 47.619 0.00 0.00 0.00 3.67
109 110 1.401905 GCGTTGGGATAAAGCTCTTGG 59.598 52.381 0.00 0.00 0.00 3.61
110 111 2.359900 AGCGTTGGGATAAAGCTCTTG 58.640 47.619 0.00 0.00 31.94 3.02
111 112 2.789409 AGCGTTGGGATAAAGCTCTT 57.211 45.000 0.00 0.00 31.94 2.85
112 113 2.633488 GAAGCGTTGGGATAAAGCTCT 58.367 47.619 0.91 0.00 37.15 4.09
113 114 1.327764 CGAAGCGTTGGGATAAAGCTC 59.672 52.381 0.91 0.00 37.15 4.09
114 115 1.066430 TCGAAGCGTTGGGATAAAGCT 60.066 47.619 0.00 0.00 40.20 3.74
115 116 1.365699 TCGAAGCGTTGGGATAAAGC 58.634 50.000 0.00 0.00 0.00 3.51
116 117 2.286418 GCATCGAAGCGTTGGGATAAAG 60.286 50.000 0.00 0.00 0.00 1.85
117 118 1.668751 GCATCGAAGCGTTGGGATAAA 59.331 47.619 0.00 0.00 0.00 1.40
118 119 1.134521 AGCATCGAAGCGTTGGGATAA 60.135 47.619 7.03 0.00 40.15 1.75
119 120 0.464036 AGCATCGAAGCGTTGGGATA 59.536 50.000 7.03 0.00 40.15 2.59
120 121 1.091771 CAGCATCGAAGCGTTGGGAT 61.092 55.000 7.03 0.00 40.15 3.85
121 122 1.741401 CAGCATCGAAGCGTTGGGA 60.741 57.895 7.03 0.00 40.15 4.37
122 123 1.577328 AACAGCATCGAAGCGTTGGG 61.577 55.000 17.38 6.08 40.15 4.12
123 124 0.238289 AAACAGCATCGAAGCGTTGG 59.762 50.000 18.31 8.66 40.15 3.77
124 125 2.036556 AAAACAGCATCGAAGCGTTG 57.963 45.000 18.31 10.82 40.15 4.10
125 126 3.747193 CATAAAACAGCATCGAAGCGTT 58.253 40.909 14.03 14.03 40.15 4.84
126 127 2.476185 GCATAAAACAGCATCGAAGCGT 60.476 45.455 7.03 5.69 40.15 5.07
127 128 2.104144 GCATAAAACAGCATCGAAGCG 58.896 47.619 7.03 5.05 40.15 4.68
128 129 2.098117 AGGCATAAAACAGCATCGAAGC 59.902 45.455 4.05 4.05 0.00 3.86
129 130 4.142622 TGAAGGCATAAAACAGCATCGAAG 60.143 41.667 0.00 0.00 0.00 3.79
130 131 3.755905 TGAAGGCATAAAACAGCATCGAA 59.244 39.130 0.00 0.00 0.00 3.71
131 132 3.342719 TGAAGGCATAAAACAGCATCGA 58.657 40.909 0.00 0.00 0.00 3.59
132 133 3.763097 TGAAGGCATAAAACAGCATCG 57.237 42.857 0.00 0.00 0.00 3.84
133 134 4.082026 ACCTTGAAGGCATAAAACAGCATC 60.082 41.667 11.96 0.00 39.63 3.91
134 135 3.834231 ACCTTGAAGGCATAAAACAGCAT 59.166 39.130 11.96 0.00 39.63 3.79
135 136 3.230134 ACCTTGAAGGCATAAAACAGCA 58.770 40.909 11.96 0.00 39.63 4.41
136 137 3.942130 ACCTTGAAGGCATAAAACAGC 57.058 42.857 11.96 0.00 39.63 4.40
137 138 9.573133 CTTTATAACCTTGAAGGCATAAAACAG 57.427 33.333 21.94 13.11 39.63 3.16
138 139 9.084533 ACTTTATAACCTTGAAGGCATAAAACA 57.915 29.630 21.94 9.32 39.63 2.83
139 140 9.923143 AACTTTATAACCTTGAAGGCATAAAAC 57.077 29.630 21.94 0.00 39.63 2.43
141 142 9.528489 AGAACTTTATAACCTTGAAGGCATAAA 57.472 29.630 21.07 21.07 39.63 1.40
142 143 9.528489 AAGAACTTTATAACCTTGAAGGCATAA 57.472 29.630 11.96 12.23 39.63 1.90
143 144 8.956426 CAAGAACTTTATAACCTTGAAGGCATA 58.044 33.333 11.96 6.59 39.63 3.14
144 145 7.669722 TCAAGAACTTTATAACCTTGAAGGCAT 59.330 33.333 11.96 7.63 39.63 4.40
145 146 7.001674 TCAAGAACTTTATAACCTTGAAGGCA 58.998 34.615 11.96 0.00 39.63 4.75
146 147 7.448748 TCAAGAACTTTATAACCTTGAAGGC 57.551 36.000 11.96 0.00 39.63 4.35
172 173 9.249053 TGCACCCTCATCACTAAATTTAATAAA 57.751 29.630 0.00 0.00 0.00 1.40
173 174 8.815565 TGCACCCTCATCACTAAATTTAATAA 57.184 30.769 0.00 0.00 0.00 1.40
174 175 8.815565 TTGCACCCTCATCACTAAATTTAATA 57.184 30.769 0.00 0.00 0.00 0.98
175 176 7.716799 TTGCACCCTCATCACTAAATTTAAT 57.283 32.000 0.00 0.00 0.00 1.40
176 177 7.531857 TTTGCACCCTCATCACTAAATTTAA 57.468 32.000 0.00 0.00 0.00 1.52
177 178 7.531857 TTTTGCACCCTCATCACTAAATTTA 57.468 32.000 0.00 0.00 0.00 1.40
178 179 6.418057 TTTTGCACCCTCATCACTAAATTT 57.582 33.333 0.00 0.00 0.00 1.82
179 180 6.418057 TTTTTGCACCCTCATCACTAAATT 57.582 33.333 0.00 0.00 0.00 1.82
180 181 6.610075 ATTTTTGCACCCTCATCACTAAAT 57.390 33.333 0.00 0.00 0.00 1.40
181 182 7.531857 TTATTTTTGCACCCTCATCACTAAA 57.468 32.000 0.00 0.00 0.00 1.85
182 183 7.716799 ATTATTTTTGCACCCTCATCACTAA 57.283 32.000 0.00 0.00 0.00 2.24
183 184 7.716799 AATTATTTTTGCACCCTCATCACTA 57.283 32.000 0.00 0.00 0.00 2.74
184 185 6.610075 AATTATTTTTGCACCCTCATCACT 57.390 33.333 0.00 0.00 0.00 3.41
185 186 6.092533 CCAAATTATTTTTGCACCCTCATCAC 59.907 38.462 0.00 0.00 0.00 3.06
186 187 6.171921 CCAAATTATTTTTGCACCCTCATCA 58.828 36.000 0.00 0.00 0.00 3.07
187 188 5.585844 CCCAAATTATTTTTGCACCCTCATC 59.414 40.000 0.00 0.00 0.00 2.92
188 189 5.250313 TCCCAAATTATTTTTGCACCCTCAT 59.750 36.000 0.00 0.00 0.00 2.90
189 190 4.594920 TCCCAAATTATTTTTGCACCCTCA 59.405 37.500 0.00 0.00 0.00 3.86
190 191 5.159273 TCCCAAATTATTTTTGCACCCTC 57.841 39.130 0.00 0.00 0.00 4.30
191 192 5.163152 TGTTCCCAAATTATTTTTGCACCCT 60.163 36.000 0.00 0.00 0.00 4.34
192 193 5.049060 GTGTTCCCAAATTATTTTTGCACCC 60.049 40.000 0.00 0.00 0.00 4.61
193 194 5.529060 TGTGTTCCCAAATTATTTTTGCACC 59.471 36.000 0.00 0.00 0.00 5.01
194 195 6.610741 TGTGTTCCCAAATTATTTTTGCAC 57.389 33.333 0.00 0.00 0.00 4.57
195 196 7.814264 AATGTGTTCCCAAATTATTTTTGCA 57.186 28.000 0.00 0.00 26.15 4.08
196 197 8.998377 ACTAATGTGTTCCCAAATTATTTTTGC 58.002 29.630 0.00 0.00 31.76 3.68
207 208 9.555727 GCTAGATATTAACTAATGTGTTCCCAA 57.444 33.333 0.00 0.00 0.00 4.12
208 209 8.710239 TGCTAGATATTAACTAATGTGTTCCCA 58.290 33.333 0.00 0.00 0.00 4.37
209 210 8.989980 GTGCTAGATATTAACTAATGTGTTCCC 58.010 37.037 0.00 0.00 0.00 3.97
210 211 9.542462 TGTGCTAGATATTAACTAATGTGTTCC 57.458 33.333 0.00 0.00 0.00 3.62
213 214 9.751542 GACTGTGCTAGATATTAACTAATGTGT 57.248 33.333 0.00 0.00 0.00 3.72
214 215 8.906693 CGACTGTGCTAGATATTAACTAATGTG 58.093 37.037 0.00 0.00 0.00 3.21
215 216 8.082852 CCGACTGTGCTAGATATTAACTAATGT 58.917 37.037 0.00 0.00 0.00 2.71
216 217 7.062371 GCCGACTGTGCTAGATATTAACTAATG 59.938 40.741 0.00 0.00 0.00 1.90
217 218 7.039644 AGCCGACTGTGCTAGATATTAACTAAT 60.040 37.037 0.00 0.00 37.28 1.73
218 219 6.264744 AGCCGACTGTGCTAGATATTAACTAA 59.735 38.462 0.00 0.00 37.28 2.24
219 220 5.768662 AGCCGACTGTGCTAGATATTAACTA 59.231 40.000 0.00 0.00 37.28 2.24
220 221 4.585162 AGCCGACTGTGCTAGATATTAACT 59.415 41.667 0.00 0.00 37.28 2.24
221 222 4.872664 AGCCGACTGTGCTAGATATTAAC 58.127 43.478 0.00 0.00 37.28 2.01
222 223 6.644248 TTAGCCGACTGTGCTAGATATTAA 57.356 37.500 0.00 0.00 41.94 1.40
223 224 6.644248 TTTAGCCGACTGTGCTAGATATTA 57.356 37.500 0.00 0.00 41.94 0.98
224 225 5.531122 TTTAGCCGACTGTGCTAGATATT 57.469 39.130 0.00 0.00 41.94 1.28
225 226 5.163447 TGTTTTAGCCGACTGTGCTAGATAT 60.163 40.000 0.00 0.00 41.94 1.63
226 227 4.158949 TGTTTTAGCCGACTGTGCTAGATA 59.841 41.667 0.00 0.00 41.94 1.98
227 228 3.056107 TGTTTTAGCCGACTGTGCTAGAT 60.056 43.478 0.00 0.00 41.94 1.98
228 229 2.297880 TGTTTTAGCCGACTGTGCTAGA 59.702 45.455 0.00 0.00 41.94 2.43
229 230 2.683968 TGTTTTAGCCGACTGTGCTAG 58.316 47.619 0.94 0.00 41.94 3.42
230 231 2.823924 TGTTTTAGCCGACTGTGCTA 57.176 45.000 0.00 0.00 40.23 3.49
231 232 1.806542 CATGTTTTAGCCGACTGTGCT 59.193 47.619 0.00 0.00 42.81 4.40
232 233 1.135689 CCATGTTTTAGCCGACTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
233 234 1.135689 GCCATGTTTTAGCCGACTGTG 60.136 52.381 0.00 0.00 0.00 3.66
234 235 1.165270 GCCATGTTTTAGCCGACTGT 58.835 50.000 0.00 0.00 0.00 3.55
235 236 0.096976 CGCCATGTTTTAGCCGACTG 59.903 55.000 0.00 0.00 0.00 3.51
236 237 1.644786 GCGCCATGTTTTAGCCGACT 61.645 55.000 0.00 0.00 0.00 4.18
237 238 1.226295 GCGCCATGTTTTAGCCGAC 60.226 57.895 0.00 0.00 0.00 4.79
238 239 1.672682 TGCGCCATGTTTTAGCCGA 60.673 52.632 4.18 0.00 0.00 5.54
239 240 1.514014 GTGCGCCATGTTTTAGCCG 60.514 57.895 4.18 0.00 0.00 5.52
240 241 1.514014 CGTGCGCCATGTTTTAGCC 60.514 57.895 4.18 0.00 0.00 3.93
241 242 1.514014 CCGTGCGCCATGTTTTAGC 60.514 57.895 4.18 0.00 0.00 3.09
242 243 1.080298 TACCGTGCGCCATGTTTTAG 58.920 50.000 4.18 0.00 0.00 1.85
243 244 0.797542 GTACCGTGCGCCATGTTTTA 59.202 50.000 4.18 0.00 0.00 1.52
244 245 1.167155 TGTACCGTGCGCCATGTTTT 61.167 50.000 4.18 0.00 0.00 2.43
245 246 0.958382 ATGTACCGTGCGCCATGTTT 60.958 50.000 4.18 0.00 0.00 2.83
246 247 0.108089 TATGTACCGTGCGCCATGTT 60.108 50.000 4.18 0.00 0.00 2.71
247 248 0.108089 TTATGTACCGTGCGCCATGT 60.108 50.000 4.18 0.80 0.00 3.21
248 249 1.010580 TTTATGTACCGTGCGCCATG 58.989 50.000 4.18 0.00 0.00 3.66
249 250 1.011333 GTTTATGTACCGTGCGCCAT 58.989 50.000 4.18 1.86 0.00 4.40
250 251 0.037139 AGTTTATGTACCGTGCGCCA 60.037 50.000 4.18 0.00 0.00 5.69
251 252 1.589779 GTAGTTTATGTACCGTGCGCC 59.410 52.381 4.18 0.00 0.00 6.53
252 253 2.533266 AGTAGTTTATGTACCGTGCGC 58.467 47.619 0.00 0.00 0.00 6.09
253 254 6.912051 TGTATAAGTAGTTTATGTACCGTGCG 59.088 38.462 0.00 0.00 33.96 5.34
254 255 7.917505 AGTGTATAAGTAGTTTATGTACCGTGC 59.082 37.037 0.00 0.00 33.96 5.34
255 256 9.793252 AAGTGTATAAGTAGTTTATGTACCGTG 57.207 33.333 0.00 0.00 33.96 4.94
286 287 2.025226 CCAGGTGTAGAGAGGACCACTA 60.025 54.545 0.00 0.00 31.61 2.74
290 291 0.324830 AGCCAGGTGTAGAGAGGACC 60.325 60.000 0.00 0.00 0.00 4.46
291 292 2.025898 GTAGCCAGGTGTAGAGAGGAC 58.974 57.143 0.00 0.00 0.00 3.85
340 341 3.294214 GAAGGATGGATCTTTGGTGCAT 58.706 45.455 0.00 0.00 0.00 3.96
342 343 2.027385 GGAAGGATGGATCTTTGGTGC 58.973 52.381 0.00 0.00 0.00 5.01
348 349 2.131023 GGACCAGGAAGGATGGATCTT 58.869 52.381 0.00 0.00 40.51 2.40
349 350 1.296523 AGGACCAGGAAGGATGGATCT 59.703 52.381 0.00 0.00 40.51 2.75
351 352 1.296523 AGAGGACCAGGAAGGATGGAT 59.703 52.381 0.00 0.00 40.51 3.41
353 354 1.127343 GAGAGGACCAGGAAGGATGG 58.873 60.000 0.00 0.00 43.87 3.51
355 356 0.336737 ACGAGAGGACCAGGAAGGAT 59.663 55.000 0.00 0.00 41.22 3.24
363 364 0.039180 TTCCTAGCACGAGAGGACCA 59.961 55.000 0.00 0.00 41.67 4.02
375 376 3.274288 CCTGACATGACCTTTTCCTAGC 58.726 50.000 0.00 0.00 0.00 3.42
381 382 0.609131 CCCGCCTGACATGACCTTTT 60.609 55.000 0.00 0.00 0.00 2.27
393 394 3.866582 GAGGATGACCCCCGCCTG 61.867 72.222 0.00 0.00 36.73 4.85
396 397 4.530857 CACGAGGATGACCCCCGC 62.531 72.222 0.00 0.00 36.63 6.13
405 406 1.821061 GATCCGGATGGCACGAGGAT 61.821 60.000 24.82 16.24 43.68 3.24
423 424 1.342574 TGGGTGGTGACGGATATGAGA 60.343 52.381 0.00 0.00 0.00 3.27
439 440 5.048713 GTCTTTCTCAATTTTGTCGATGGGT 60.049 40.000 0.00 0.00 0.00 4.51
454 455 4.142160 CGACATATCTGGTGGTCTTTCTCA 60.142 45.833 0.00 0.00 0.00 3.27
464 468 2.205074 GCAAGGACGACATATCTGGTG 58.795 52.381 0.00 0.00 0.00 4.17
465 469 1.202417 CGCAAGGACGACATATCTGGT 60.202 52.381 0.00 0.00 34.06 4.00
466 470 1.491670 CGCAAGGACGACATATCTGG 58.508 55.000 0.00 0.00 34.06 3.86
522 527 3.636231 TGGAGTTGGCTCGTGGGG 61.636 66.667 0.00 0.00 42.53 4.96
568 573 2.691526 AGAAGTGTGGTCTGTGTTCGTA 59.308 45.455 0.00 0.00 0.00 3.43
578 583 3.194005 TGGTTGAGAAGAAGTGTGGTC 57.806 47.619 0.00 0.00 0.00 4.02
721 728 2.584391 GGCCTCACCCTCGTCTTGT 61.584 63.158 0.00 0.00 0.00 3.16
736 743 4.207891 TCTTACACTCTTTCATCTGGCC 57.792 45.455 0.00 0.00 0.00 5.36
739 746 6.871844 TCTCCATCTTACACTCTTTCATCTG 58.128 40.000 0.00 0.00 0.00 2.90
740 747 7.487822 TTCTCCATCTTACACTCTTTCATCT 57.512 36.000 0.00 0.00 0.00 2.90
741 748 6.257630 GCTTCTCCATCTTACACTCTTTCATC 59.742 42.308 0.00 0.00 0.00 2.92
742 749 6.070309 AGCTTCTCCATCTTACACTCTTTCAT 60.070 38.462 0.00 0.00 0.00 2.57
743 750 5.247110 AGCTTCTCCATCTTACACTCTTTCA 59.753 40.000 0.00 0.00 0.00 2.69
744 751 5.729510 AGCTTCTCCATCTTACACTCTTTC 58.270 41.667 0.00 0.00 0.00 2.62
745 752 5.753721 AGCTTCTCCATCTTACACTCTTT 57.246 39.130 0.00 0.00 0.00 2.52
746 753 5.486526 CAAGCTTCTCCATCTTACACTCTT 58.513 41.667 0.00 0.00 0.00 2.85
747 754 4.081198 CCAAGCTTCTCCATCTTACACTCT 60.081 45.833 0.00 0.00 0.00 3.24
748 755 4.187694 CCAAGCTTCTCCATCTTACACTC 58.812 47.826 0.00 0.00 0.00 3.51
749 756 3.584848 ACCAAGCTTCTCCATCTTACACT 59.415 43.478 0.00 0.00 0.00 3.55
750 757 3.944087 ACCAAGCTTCTCCATCTTACAC 58.056 45.455 0.00 0.00 0.00 2.90
751 758 5.957771 ATACCAAGCTTCTCCATCTTACA 57.042 39.130 0.00 0.00 0.00 2.41
752 759 6.116126 ACAATACCAAGCTTCTCCATCTTAC 58.884 40.000 0.00 0.00 0.00 2.34
755 762 4.851639 ACAATACCAAGCTTCTCCATCT 57.148 40.909 0.00 0.00 0.00 2.90
779 811 3.119137 GCAATAAACCCCATGTGAAGGAC 60.119 47.826 0.00 0.00 0.00 3.85
793 825 7.421613 CAGTAGTCGTACGATTTTGCAATAAAC 59.578 37.037 22.57 8.67 33.97 2.01
822 854 5.737063 GCCCATGTAACCTTTTGCTATGATG 60.737 44.000 0.00 0.00 0.00 3.07
826 866 3.701040 CAGCCCATGTAACCTTTTGCTAT 59.299 43.478 0.00 0.00 0.00 2.97
957 4365 1.068434 AGGAAATGCGTTTGGTGGTTG 59.932 47.619 9.04 0.00 0.00 3.77
1364 4776 1.011968 CATTTCGTCGAACGCCTCCA 61.012 55.000 7.29 0.00 42.21 3.86
1370 4782 0.246912 GCTCAGCATTTCGTCGAACG 60.247 55.000 7.29 3.18 44.19 3.95
1617 5029 2.393768 AAGCGCCTTGTCGATGCAG 61.394 57.895 2.29 0.00 0.00 4.41
1618 5030 2.358615 AAGCGCCTTGTCGATGCA 60.359 55.556 2.29 0.00 0.00 3.96
1710 5122 3.584868 AACCCTCCGCACGCTACAC 62.585 63.158 0.00 0.00 0.00 2.90
1790 5202 6.015095 CACCTCTGCCATCACTGTATAATAGA 60.015 42.308 0.00 0.00 0.00 1.98
1828 5267 1.805869 GCATCATTCCTCATCCTCCG 58.194 55.000 0.00 0.00 0.00 4.63
2011 5491 4.042187 ACTTACAATCTCCTTTGCCTCAGT 59.958 41.667 0.00 0.00 0.00 3.41
2013 5493 4.041567 TCACTTACAATCTCCTTTGCCTCA 59.958 41.667 0.00 0.00 0.00 3.86
2070 5550 1.989864 TCAACAACTGCGCTATACGTG 59.010 47.619 9.73 0.25 46.11 4.49
2177 5657 9.277783 AGAGACCATTTAATAATGCAGTATGTC 57.722 33.333 7.55 9.31 39.87 3.06
2230 5710 3.564511 CACTGTTGTTTAGCAATTCCCG 58.435 45.455 0.00 0.00 39.55 5.14
2347 5827 0.038744 CCCTTCTGCAACATCTGGGT 59.961 55.000 0.00 0.00 0.00 4.51
2390 5870 4.430007 TGACGCATGGATCAGTAAGTTAC 58.570 43.478 4.78 4.78 0.00 2.50
2483 5963 7.562135 ACTACCTTCGGTACATCAAAACATAT 58.438 34.615 0.00 0.00 37.09 1.78
3095 6586 1.309950 CGATCCAGTAGAGCTTCCGA 58.690 55.000 0.00 0.00 0.00 4.55
3328 6820 3.926821 GGGGAACGCAGTAATTTCAAA 57.073 42.857 0.00 0.00 45.00 2.69
3340 6832 4.235731 CCCTATGTTGGGGAACGC 57.764 61.111 0.00 0.00 46.50 4.84
3354 6846 3.011369 TCCATACTATCGCTATGTCCCCT 59.989 47.826 0.00 0.00 0.00 4.79
3355 6847 3.362706 TCCATACTATCGCTATGTCCCC 58.637 50.000 0.00 0.00 0.00 4.81
3356 6848 6.461231 GGTTATCCATACTATCGCTATGTCCC 60.461 46.154 0.00 0.00 0.00 4.46
3357 6849 6.096423 TGGTTATCCATACTATCGCTATGTCC 59.904 42.308 0.00 0.00 39.03 4.02
3358 6850 7.096884 TGGTTATCCATACTATCGCTATGTC 57.903 40.000 0.00 0.00 39.03 3.06
3359 6851 7.476540 TTGGTTATCCATACTATCGCTATGT 57.523 36.000 0.00 0.00 43.91 2.29
3360 6852 6.477033 GCTTGGTTATCCATACTATCGCTATG 59.523 42.308 0.00 0.00 43.91 2.23
3361 6853 6.381420 AGCTTGGTTATCCATACTATCGCTAT 59.619 38.462 0.00 0.00 43.91 2.97
3362 6854 5.715279 AGCTTGGTTATCCATACTATCGCTA 59.285 40.000 0.00 0.00 43.91 4.26
3363 6855 4.528596 AGCTTGGTTATCCATACTATCGCT 59.471 41.667 0.00 0.00 43.91 4.93
3364 6856 4.822026 AGCTTGGTTATCCATACTATCGC 58.178 43.478 0.00 0.00 43.91 4.58
3365 6857 6.347725 GCAAAGCTTGGTTATCCATACTATCG 60.348 42.308 0.00 0.00 43.91 2.92
3366 6858 6.486657 TGCAAAGCTTGGTTATCCATACTATC 59.513 38.462 0.00 0.00 43.91 2.08
3367 6859 6.364701 TGCAAAGCTTGGTTATCCATACTAT 58.635 36.000 0.00 0.00 43.91 2.12
3368 6860 5.750524 TGCAAAGCTTGGTTATCCATACTA 58.249 37.500 0.00 0.00 43.91 1.82
3369 6861 4.599041 TGCAAAGCTTGGTTATCCATACT 58.401 39.130 0.00 0.00 43.91 2.12
3370 6862 4.981806 TGCAAAGCTTGGTTATCCATAC 57.018 40.909 0.00 0.00 43.91 2.39
3371 6863 4.159506 GGTTGCAAAGCTTGGTTATCCATA 59.840 41.667 0.00 0.00 42.05 2.74
3372 6864 3.055891 GGTTGCAAAGCTTGGTTATCCAT 60.056 43.478 0.00 0.00 42.05 3.41
3373 6865 2.298729 GGTTGCAAAGCTTGGTTATCCA 59.701 45.455 0.00 0.00 42.05 3.41
3374 6866 2.959516 GGTTGCAAAGCTTGGTTATCC 58.040 47.619 0.00 0.00 42.05 2.59
3406 6898 3.648339 TTCTTCTGGCATCTTGTTTGC 57.352 42.857 0.00 0.00 39.41 3.68
3407 6899 4.219070 TCCATTCTTCTGGCATCTTGTTTG 59.781 41.667 0.00 0.00 36.16 2.93
3408 6900 4.410099 TCCATTCTTCTGGCATCTTGTTT 58.590 39.130 0.00 0.00 36.16 2.83
3409 6901 4.015084 CTCCATTCTTCTGGCATCTTGTT 58.985 43.478 0.00 0.00 36.16 2.83
3410 6902 3.265221 TCTCCATTCTTCTGGCATCTTGT 59.735 43.478 0.00 0.00 36.16 3.16
3411 6903 3.626670 GTCTCCATTCTTCTGGCATCTTG 59.373 47.826 0.00 0.00 36.16 3.02
3412 6904 3.681034 CGTCTCCATTCTTCTGGCATCTT 60.681 47.826 0.00 0.00 36.16 2.40
3413 6905 2.158986 CGTCTCCATTCTTCTGGCATCT 60.159 50.000 0.00 0.00 36.16 2.90
3414 6906 2.208431 CGTCTCCATTCTTCTGGCATC 58.792 52.381 0.00 0.00 36.16 3.91
3415 6907 1.745141 GCGTCTCCATTCTTCTGGCAT 60.745 52.381 0.00 0.00 36.16 4.40
3416 6908 0.391661 GCGTCTCCATTCTTCTGGCA 60.392 55.000 0.00 0.00 36.16 4.92
3417 6909 0.391661 TGCGTCTCCATTCTTCTGGC 60.392 55.000 0.00 0.00 36.16 4.85
3418 6910 2.099141 TTGCGTCTCCATTCTTCTGG 57.901 50.000 0.00 0.00 37.66 3.86
3419 6911 4.691860 ATTTTGCGTCTCCATTCTTCTG 57.308 40.909 0.00 0.00 0.00 3.02
3420 6912 7.770897 ACTAATATTTTGCGTCTCCATTCTTCT 59.229 33.333 0.00 0.00 0.00 2.85
3421 6913 7.920738 ACTAATATTTTGCGTCTCCATTCTTC 58.079 34.615 0.00 0.00 0.00 2.87
3422 6914 7.865706 ACTAATATTTTGCGTCTCCATTCTT 57.134 32.000 0.00 0.00 0.00 2.52
3423 6915 7.441458 GGTACTAATATTTTGCGTCTCCATTCT 59.559 37.037 0.00 0.00 0.00 2.40
3424 6916 7.225931 TGGTACTAATATTTTGCGTCTCCATTC 59.774 37.037 0.00 0.00 0.00 2.67
3425 6917 7.051623 TGGTACTAATATTTTGCGTCTCCATT 58.948 34.615 0.00 0.00 0.00 3.16
3426 6918 6.588204 TGGTACTAATATTTTGCGTCTCCAT 58.412 36.000 0.00 0.00 0.00 3.41
3427 6919 5.979993 TGGTACTAATATTTTGCGTCTCCA 58.020 37.500 0.00 0.00 0.00 3.86
3428 6920 6.913873 TTGGTACTAATATTTTGCGTCTCC 57.086 37.500 0.00 0.00 0.00 3.71
3429 6921 8.366671 AGATTGGTACTAATATTTTGCGTCTC 57.633 34.615 4.22 0.00 0.00 3.36
3430 6922 8.732746 AAGATTGGTACTAATATTTTGCGTCT 57.267 30.769 4.22 0.00 0.00 4.18
3431 6923 8.609176 TGAAGATTGGTACTAATATTTTGCGTC 58.391 33.333 12.34 4.72 0.00 5.19
3432 6924 8.500753 TGAAGATTGGTACTAATATTTTGCGT 57.499 30.769 12.34 0.00 0.00 5.24
3433 6925 9.438291 CTTGAAGATTGGTACTAATATTTTGCG 57.562 33.333 12.34 0.69 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.