Multiple sequence alignment - TraesCS5D01G041800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G041800 chr5D 100.000 3934 0 0 1 3934 42037514 42041447 0.000000e+00 7265.0
1 TraesCS5D01G041800 chr5A 92.832 2567 112 34 462 2989 30412442 30414975 0.000000e+00 3655.0
2 TraesCS5D01G041800 chr5A 84.169 638 42 21 3344 3934 30415219 30415844 7.380000e-157 564.0
3 TraesCS5D01G041800 chr5A 95.763 236 10 0 1 236 30412210 30412445 7.980000e-102 381.0
4 TraesCS5D01G041800 chr5B 87.781 802 64 20 1713 2505 36730325 36731101 0.000000e+00 907.0
5 TraesCS5D01G041800 chr5B 94.106 492 24 3 2502 2989 36731190 36731680 0.000000e+00 743.0
6 TraesCS5D01G041800 chr5B 84.028 576 62 17 3374 3934 36733430 36733990 9.680000e-146 527.0
7 TraesCS5D01G041800 chr5B 94.810 289 15 0 962 1250 36729867 36730155 5.990000e-123 451.0
8 TraesCS5D01G041800 chr5B 95.918 147 5 1 1512 1657 36730154 36730300 1.830000e-58 237.0
9 TraesCS5D01G041800 chr5B 91.447 152 13 0 782 933 36728345 36728496 3.980000e-50 209.0
10 TraesCS5D01G041800 chr5B 92.473 93 7 0 2989 3081 540361750 540361842 2.470000e-27 134.0
11 TraesCS5D01G041800 chr5B 100.000 29 0 0 921 949 36729841 36729869 2.000000e-03 54.7
12 TraesCS5D01G041800 chr3D 75.152 821 185 15 2111 2926 307568064 307567258 6.210000e-98 368.0
13 TraesCS5D01G041800 chr1B 77.705 610 129 7 2304 2911 1472227 1472831 2.230000e-97 366.0
14 TraesCS5D01G041800 chr1B 77.870 601 121 9 2314 2911 1424395 1423804 2.890000e-96 363.0
15 TraesCS5D01G041800 chr1B 91.525 59 4 1 325 383 633788955 633789012 3.260000e-11 80.5
16 TraesCS5D01G041800 chr3A 74.907 809 176 20 2112 2911 426653562 426654352 1.050000e-90 344.0
17 TraesCS5D01G041800 chr1D 74.484 823 190 12 2111 2926 2125698 2124889 4.870000e-89 339.0
18 TraesCS5D01G041800 chr3B 88.530 279 28 2 28 303 125923630 125923353 6.300000e-88 335.0
19 TraesCS5D01G041800 chr3B 74.349 807 184 19 2112 2911 413992951 413993741 4.900000e-84 322.0
20 TraesCS5D01G041800 chr3B 91.398 93 7 1 2992 3083 723452944 723452852 4.130000e-25 126.0
21 TraesCS5D01G041800 chr1A 77.193 570 106 12 2314 2879 1229524 1228975 1.060000e-80 311.0
22 TraesCS5D01G041800 chr7D 78.177 362 76 2 2144 2505 614276536 614276178 1.100000e-55 228.0
23 TraesCS5D01G041800 chr7D 90.184 163 13 3 434 593 88004001 88004163 3.980000e-50 209.0
24 TraesCS5D01G041800 chr7D 89.583 96 10 0 2992 3087 226690346 226690441 5.340000e-24 122.0
25 TraesCS5D01G041800 chr7B 78.916 332 63 6 2176 2505 706108241 706107915 6.620000e-53 219.0
26 TraesCS5D01G041800 chr6D 93.333 90 6 0 2992 3081 168293755 168293844 2.470000e-27 134.0
27 TraesCS5D01G041800 chr6D 94.186 86 5 0 2991 3076 85081783 85081868 8.870000e-27 132.0
28 TraesCS5D01G041800 chr7A 93.182 88 6 0 2989 3076 56727698 56727785 3.190000e-26 130.0
29 TraesCS5D01G041800 chr7A 92.222 90 7 0 2992 3081 477234932 477234843 1.150000e-25 128.0
30 TraesCS5D01G041800 chr6B 90.426 94 9 0 2989 3082 56989587 56989680 1.480000e-24 124.0
31 TraesCS5D01G041800 chr4B 91.304 92 7 1 2992 3083 491017641 491017731 1.480000e-24 124.0
32 TraesCS5D01G041800 chr2A 100.000 29 0 0 325 353 635922254 635922282 2.000000e-03 54.7
33 TraesCS5D01G041800 chr2A 100.000 29 0 0 325 353 635925459 635925487 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G041800 chr5D 42037514 42041447 3933 False 7265.000000 7265 100.000000 1 3934 1 chr5D.!!$F1 3933
1 TraesCS5D01G041800 chr5A 30412210 30415844 3634 False 1533.333333 3655 90.921333 1 3934 3 chr5A.!!$F1 3933
2 TraesCS5D01G041800 chr5B 36728345 36733990 5645 False 446.957143 907 92.584286 782 3934 7 chr5B.!!$F2 3152
3 TraesCS5D01G041800 chr3D 307567258 307568064 806 True 368.000000 368 75.152000 2111 2926 1 chr3D.!!$R1 815
4 TraesCS5D01G041800 chr1B 1472227 1472831 604 False 366.000000 366 77.705000 2304 2911 1 chr1B.!!$F1 607
5 TraesCS5D01G041800 chr1B 1423804 1424395 591 True 363.000000 363 77.870000 2314 2911 1 chr1B.!!$R1 597
6 TraesCS5D01G041800 chr3A 426653562 426654352 790 False 344.000000 344 74.907000 2112 2911 1 chr3A.!!$F1 799
7 TraesCS5D01G041800 chr1D 2124889 2125698 809 True 339.000000 339 74.484000 2111 2926 1 chr1D.!!$R1 815
8 TraesCS5D01G041800 chr3B 413992951 413993741 790 False 322.000000 322 74.349000 2112 2911 1 chr3B.!!$F1 799
9 TraesCS5D01G041800 chr1A 1228975 1229524 549 True 311.000000 311 77.193000 2314 2879 1 chr1A.!!$R1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.033504 GACTTTGAGCTGGTCACGGA 59.966 55.0 9.38 0.0 33.71 4.69 F
285 286 0.034186 GACCATGGAGTGCAATGGGA 60.034 55.0 21.47 0.0 46.45 4.37 F
450 451 0.107456 ATCATCCAGTGGATCACGGC 59.893 55.0 22.36 0.0 40.98 5.68 F
777 796 0.389948 CCCTGCACCGACAACTAGAC 60.390 60.0 0.00 0.0 0.00 2.59 F
1508 2884 0.537188 AACTGGTGCGGGAGATACTG 59.463 55.0 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 3459 0.243636 AGCGGGTAATGTGCAAAAGC 59.756 50.000 0.00 0.00 0.00 3.51 R
2203 3611 1.034292 GTTGCCTTCTCTCATGGCCC 61.034 60.000 0.00 0.00 43.53 5.80 R
2333 3753 1.551145 CGGCGAAGTAGAAGAGCTTC 58.449 55.000 0.00 2.03 39.78 3.86 R
2484 3904 1.880027 CACCACCTTGAGCTGGTTTAC 59.120 52.381 0.00 0.00 38.84 2.01 R
3253 4800 1.466856 TGCTAGCTTGAATTGCAGGG 58.533 50.000 17.23 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 5.012046 TGTCTTCTTCCTGCTACAATCAAGA 59.988 40.000 0.00 0.00 0.00 3.02
128 129 2.844451 GCTGTTGTTGCCGGCTTCA 61.844 57.895 29.70 22.62 0.00 3.02
186 187 1.472878 CATCTCCTTCAACTCGGTCGA 59.527 52.381 0.00 0.00 0.00 4.20
194 195 2.341101 AACTCGGTCGACATCGCCT 61.341 57.895 18.91 0.00 39.60 5.52
197 198 2.352001 CGGTCGACATCGCCTACG 60.352 66.667 18.91 5.00 39.60 3.51
236 237 0.934496 TCAAGTCAACGCCAACTTCG 59.066 50.000 0.00 0.00 33.53 3.79
237 238 0.041312 CAAGTCAACGCCAACTTCGG 60.041 55.000 0.00 0.00 33.53 4.30
245 246 4.296265 CCAACTTCGGCTACCACC 57.704 61.111 0.00 0.00 0.00 4.61
253 254 2.047560 GGCTACCACCGCGACTTT 60.048 61.111 8.23 0.00 0.00 2.66
254 255 2.388232 GGCTACCACCGCGACTTTG 61.388 63.158 8.23 0.00 0.00 2.77
255 256 1.373748 GCTACCACCGCGACTTTGA 60.374 57.895 8.23 0.00 0.00 2.69
256 257 1.352156 GCTACCACCGCGACTTTGAG 61.352 60.000 8.23 0.00 0.00 3.02
257 258 1.352156 CTACCACCGCGACTTTGAGC 61.352 60.000 8.23 0.00 0.00 4.26
258 259 1.812686 TACCACCGCGACTTTGAGCT 61.813 55.000 8.23 0.00 0.00 4.09
259 260 2.671177 CCACCGCGACTTTGAGCTG 61.671 63.158 8.23 0.00 0.00 4.24
260 261 2.357517 ACCGCGACTTTGAGCTGG 60.358 61.111 8.23 0.00 34.76 4.85
261 262 2.357517 CCGCGACTTTGAGCTGGT 60.358 61.111 8.23 0.00 0.00 4.00
262 263 2.383527 CCGCGACTTTGAGCTGGTC 61.384 63.158 8.23 0.00 0.00 4.02
263 264 1.664649 CGCGACTTTGAGCTGGTCA 60.665 57.895 0.00 5.28 0.00 4.02
264 265 1.862806 GCGACTTTGAGCTGGTCAC 59.137 57.895 9.38 0.00 33.71 3.67
265 266 1.891060 GCGACTTTGAGCTGGTCACG 61.891 60.000 9.38 10.73 33.71 4.35
266 267 1.284982 CGACTTTGAGCTGGTCACGG 61.285 60.000 9.38 7.75 33.71 4.94
267 268 0.033504 GACTTTGAGCTGGTCACGGA 59.966 55.000 9.38 0.00 33.71 4.69
268 269 0.249911 ACTTTGAGCTGGTCACGGAC 60.250 55.000 9.38 0.00 33.71 4.79
277 278 4.598257 GTCACGGACCATGGAGTG 57.402 61.111 21.47 22.95 36.06 3.51
278 279 1.741770 GTCACGGACCATGGAGTGC 60.742 63.158 21.47 15.78 34.84 4.40
279 280 2.213513 TCACGGACCATGGAGTGCA 61.214 57.895 21.47 11.87 34.84 4.57
280 281 1.302431 CACGGACCATGGAGTGCAA 60.302 57.895 21.47 0.00 0.00 4.08
281 282 0.677731 CACGGACCATGGAGTGCAAT 60.678 55.000 21.47 0.00 0.00 3.56
282 283 0.677731 ACGGACCATGGAGTGCAATG 60.678 55.000 21.47 1.47 0.00 2.82
284 285 1.039233 GGACCATGGAGTGCAATGGG 61.039 60.000 21.47 4.93 46.45 4.00
285 286 0.034186 GACCATGGAGTGCAATGGGA 60.034 55.000 21.47 0.00 46.45 4.37
286 287 0.632835 ACCATGGAGTGCAATGGGAT 59.367 50.000 21.47 0.00 46.45 3.85
287 288 1.325355 CCATGGAGTGCAATGGGATC 58.675 55.000 5.56 0.00 39.82 3.36
288 289 1.133575 CCATGGAGTGCAATGGGATCT 60.134 52.381 5.56 0.00 39.82 2.75
289 290 1.954382 CATGGAGTGCAATGGGATCTG 59.046 52.381 0.00 0.00 0.00 2.90
290 291 0.256752 TGGAGTGCAATGGGATCTGG 59.743 55.000 0.00 0.00 0.00 3.86
291 292 0.548031 GGAGTGCAATGGGATCTGGA 59.452 55.000 0.00 0.00 0.00 3.86
292 293 1.673168 GAGTGCAATGGGATCTGGAC 58.327 55.000 0.00 0.00 34.40 4.02
293 294 0.107508 AGTGCAATGGGATCTGGACG 60.108 55.000 0.00 0.00 38.75 4.79
294 295 1.097547 GTGCAATGGGATCTGGACGG 61.098 60.000 0.00 0.00 0.00 4.79
295 296 1.224592 GCAATGGGATCTGGACGGT 59.775 57.895 0.00 0.00 0.00 4.83
296 297 0.394352 GCAATGGGATCTGGACGGTT 60.394 55.000 0.00 0.00 0.00 4.44
297 298 1.668419 CAATGGGATCTGGACGGTTC 58.332 55.000 0.00 0.00 0.00 3.62
298 299 1.210478 CAATGGGATCTGGACGGTTCT 59.790 52.381 0.00 0.00 0.00 3.01
299 300 1.584724 ATGGGATCTGGACGGTTCTT 58.415 50.000 0.00 0.00 0.00 2.52
300 301 0.613260 TGGGATCTGGACGGTTCTTG 59.387 55.000 0.00 0.00 0.00 3.02
301 302 0.107654 GGGATCTGGACGGTTCTTGG 60.108 60.000 0.00 0.00 0.00 3.61
302 303 0.107654 GGATCTGGACGGTTCTTGGG 60.108 60.000 0.00 0.00 0.00 4.12
303 304 0.902531 GATCTGGACGGTTCTTGGGA 59.097 55.000 0.00 0.00 0.00 4.37
304 305 0.905357 ATCTGGACGGTTCTTGGGAG 59.095 55.000 0.00 0.00 0.00 4.30
305 306 1.376037 CTGGACGGTTCTTGGGAGC 60.376 63.158 0.00 0.00 0.00 4.70
306 307 2.046217 GGACGGTTCTTGGGAGCC 60.046 66.667 0.00 0.00 39.12 4.70
307 308 2.046217 GACGGTTCTTGGGAGCCC 60.046 66.667 0.00 0.00 39.29 5.19
308 309 3.623703 GACGGTTCTTGGGAGCCCC 62.624 68.421 2.49 3.42 45.71 5.80
324 325 3.687102 CCCGGTCCTGCACGTGTA 61.687 66.667 18.38 12.42 0.00 2.90
325 326 2.431942 CCGGTCCTGCACGTGTAC 60.432 66.667 18.38 10.26 0.00 2.90
326 327 2.337170 CGGTCCTGCACGTGTACA 59.663 61.111 18.38 6.55 0.00 2.90
327 328 1.080093 CGGTCCTGCACGTGTACAT 60.080 57.895 18.38 0.00 0.00 2.29
328 329 1.351430 CGGTCCTGCACGTGTACATG 61.351 60.000 18.38 13.64 0.00 3.21
329 330 1.019278 GGTCCTGCACGTGTACATGG 61.019 60.000 18.38 10.68 0.00 3.66
330 331 1.019278 GTCCTGCACGTGTACATGGG 61.019 60.000 18.38 16.33 0.00 4.00
331 332 2.398554 CCTGCACGTGTACATGGGC 61.399 63.158 31.26 31.26 46.58 5.36
332 333 2.359354 TGCACGTGTACATGGGCC 60.359 61.111 33.66 19.16 45.85 5.80
333 334 2.359354 GCACGTGTACATGGGCCA 60.359 61.111 28.58 9.61 40.76 5.36
334 335 2.398554 GCACGTGTACATGGGCCAG 61.399 63.158 28.58 6.92 40.76 4.85
335 336 1.745115 CACGTGTACATGGGCCAGG 60.745 63.158 18.06 18.06 0.00 4.45
336 337 2.824041 CGTGTACATGGGCCAGGC 60.824 66.667 19.71 1.26 0.00 4.85
356 357 4.269523 GGCTGTGCACCACCCTGA 62.270 66.667 15.69 0.00 32.73 3.86
357 358 2.670934 GCTGTGCACCACCCTGAG 60.671 66.667 15.69 3.90 32.73 3.35
358 359 2.670934 CTGTGCACCACCCTGAGC 60.671 66.667 15.69 0.00 32.73 4.26
359 360 4.624364 TGTGCACCACCCTGAGCG 62.624 66.667 15.69 0.00 32.73 5.03
369 370 3.774528 CCTGAGCGCTGCCCACTA 61.775 66.667 18.48 0.00 0.00 2.74
370 371 2.510238 CTGAGCGCTGCCCACTAC 60.510 66.667 18.48 0.00 0.00 2.73
371 372 3.300934 CTGAGCGCTGCCCACTACA 62.301 63.158 18.48 2.08 0.00 2.74
372 373 2.047274 GAGCGCTGCCCACTACAA 60.047 61.111 18.48 0.00 0.00 2.41
373 374 2.046892 AGCGCTGCCCACTACAAG 60.047 61.111 10.39 0.00 0.00 3.16
374 375 2.358737 GCGCTGCCCACTACAAGT 60.359 61.111 0.00 0.00 0.00 3.16
375 376 1.079405 GCGCTGCCCACTACAAGTA 60.079 57.895 0.00 0.00 0.00 2.24
376 377 0.462047 GCGCTGCCCACTACAAGTAT 60.462 55.000 0.00 0.00 0.00 2.12
377 378 1.571919 CGCTGCCCACTACAAGTATC 58.428 55.000 0.00 0.00 0.00 2.24
378 379 1.137086 CGCTGCCCACTACAAGTATCT 59.863 52.381 0.00 0.00 0.00 1.98
379 380 2.555199 GCTGCCCACTACAAGTATCTG 58.445 52.381 0.00 0.00 0.00 2.90
380 381 2.743183 GCTGCCCACTACAAGTATCTGG 60.743 54.545 0.00 0.00 0.00 3.86
381 382 1.837439 TGCCCACTACAAGTATCTGGG 59.163 52.381 14.57 14.57 32.46 4.45
382 383 1.141053 GCCCACTACAAGTATCTGGGG 59.859 57.143 18.11 10.95 30.58 4.96
383 384 1.141053 CCCACTACAAGTATCTGGGGC 59.859 57.143 12.35 0.00 27.27 5.80
384 385 1.837439 CCACTACAAGTATCTGGGGCA 59.163 52.381 0.00 0.00 0.00 5.36
385 386 2.158900 CCACTACAAGTATCTGGGGCAG 60.159 54.545 0.00 0.00 0.00 4.85
386 387 2.501723 CACTACAAGTATCTGGGGCAGT 59.498 50.000 0.00 0.00 32.61 4.40
387 388 3.055094 CACTACAAGTATCTGGGGCAGTT 60.055 47.826 0.00 0.00 32.61 3.16
388 389 3.587506 ACTACAAGTATCTGGGGCAGTTT 59.412 43.478 0.00 0.00 32.61 2.66
389 390 2.795329 ACAAGTATCTGGGGCAGTTTG 58.205 47.619 0.00 0.00 32.61 2.93
390 391 2.108250 ACAAGTATCTGGGGCAGTTTGT 59.892 45.455 0.00 0.00 32.61 2.83
391 392 2.749621 CAAGTATCTGGGGCAGTTTGTC 59.250 50.000 0.00 0.00 32.61 3.18
392 393 2.269940 AGTATCTGGGGCAGTTTGTCT 58.730 47.619 0.00 0.00 32.61 3.41
393 394 2.237392 AGTATCTGGGGCAGTTTGTCTC 59.763 50.000 0.00 0.00 32.61 3.36
394 395 1.067295 ATCTGGGGCAGTTTGTCTCA 58.933 50.000 0.00 0.00 28.36 3.27
395 396 0.843309 TCTGGGGCAGTTTGTCTCAA 59.157 50.000 0.00 0.00 28.63 3.02
396 397 1.214175 TCTGGGGCAGTTTGTCTCAAA 59.786 47.619 0.00 0.00 28.63 2.69
397 398 2.031120 CTGGGGCAGTTTGTCTCAAAA 58.969 47.619 0.00 0.00 28.63 2.44
398 399 2.430332 CTGGGGCAGTTTGTCTCAAAAA 59.570 45.455 0.00 0.00 28.63 1.94
424 425 2.521103 TATCTGGGGCAGAGACAGC 58.479 57.895 0.00 0.00 44.08 4.40
425 426 0.325577 TATCTGGGGCAGAGACAGCA 60.326 55.000 0.00 0.00 44.08 4.41
426 427 1.203441 ATCTGGGGCAGAGACAGCAA 61.203 55.000 0.00 0.00 44.08 3.91
427 428 1.073722 CTGGGGCAGAGACAGCAAA 59.926 57.895 0.00 0.00 32.44 3.68
428 429 1.228245 TGGGGCAGAGACAGCAAAC 60.228 57.895 0.00 0.00 0.00 2.93
429 430 1.228245 GGGGCAGAGACAGCAAACA 60.228 57.895 0.00 0.00 0.00 2.83
430 431 1.239968 GGGGCAGAGACAGCAAACAG 61.240 60.000 0.00 0.00 0.00 3.16
431 432 0.250467 GGGCAGAGACAGCAAACAGA 60.250 55.000 0.00 0.00 0.00 3.41
432 433 1.612726 GGGCAGAGACAGCAAACAGAT 60.613 52.381 0.00 0.00 0.00 2.90
433 434 1.736681 GGCAGAGACAGCAAACAGATC 59.263 52.381 0.00 0.00 0.00 2.75
434 435 2.420642 GCAGAGACAGCAAACAGATCA 58.579 47.619 0.00 0.00 0.00 2.92
435 436 3.008330 GCAGAGACAGCAAACAGATCAT 58.992 45.455 0.00 0.00 0.00 2.45
436 437 3.063725 GCAGAGACAGCAAACAGATCATC 59.936 47.826 0.00 0.00 0.00 2.92
437 438 3.622163 CAGAGACAGCAAACAGATCATCC 59.378 47.826 0.00 0.00 0.00 3.51
438 439 3.262660 AGAGACAGCAAACAGATCATCCA 59.737 43.478 0.00 0.00 0.00 3.41
439 440 3.607741 AGACAGCAAACAGATCATCCAG 58.392 45.455 0.00 0.00 0.00 3.86
440 441 3.008813 AGACAGCAAACAGATCATCCAGT 59.991 43.478 0.00 0.00 0.00 4.00
441 442 3.079578 ACAGCAAACAGATCATCCAGTG 58.920 45.455 0.00 0.00 0.00 3.66
442 443 2.422479 CAGCAAACAGATCATCCAGTGG 59.578 50.000 1.40 1.40 0.00 4.00
443 444 2.306805 AGCAAACAGATCATCCAGTGGA 59.693 45.455 15.88 15.88 35.55 4.02
444 445 3.053842 AGCAAACAGATCATCCAGTGGAT 60.054 43.478 19.53 19.53 44.21 3.41
445 446 3.314635 GCAAACAGATCATCCAGTGGATC 59.685 47.826 22.36 12.32 40.98 3.36
446 447 4.520179 CAAACAGATCATCCAGTGGATCA 58.480 43.478 22.36 10.54 40.98 2.92
447 448 3.834489 ACAGATCATCCAGTGGATCAC 57.166 47.619 22.36 15.09 40.98 3.06
448 449 2.102084 ACAGATCATCCAGTGGATCACG 59.898 50.000 22.36 11.45 40.98 4.35
449 450 1.690893 AGATCATCCAGTGGATCACGG 59.309 52.381 22.36 11.08 40.98 4.94
450 451 0.107456 ATCATCCAGTGGATCACGGC 59.893 55.000 22.36 0.00 40.98 5.68
451 452 1.884464 CATCCAGTGGATCACGGCG 60.884 63.158 22.36 4.80 40.98 6.46
452 453 3.094062 ATCCAGTGGATCACGGCGG 62.094 63.158 19.53 0.00 38.09 6.13
453 454 3.770040 CCAGTGGATCACGGCGGA 61.770 66.667 13.24 6.15 39.64 5.54
454 455 2.509336 CAGTGGATCACGGCGGAC 60.509 66.667 13.24 0.00 39.64 4.79
455 456 3.771160 AGTGGATCACGGCGGACC 61.771 66.667 13.24 9.33 39.64 4.46
487 488 4.202684 CCCCTTTTACCTTTCTTCCTCCTT 60.203 45.833 0.00 0.00 0.00 3.36
513 514 1.027255 TCTCGAGAGTGCTTCCTCCG 61.027 60.000 12.08 0.00 31.53 4.63
522 523 0.892755 TGCTTCCTCCGTTCGTGTAT 59.107 50.000 0.00 0.00 0.00 2.29
597 598 6.127054 TGTCCATCTATTCCCTTACACTTCAG 60.127 42.308 0.00 0.00 0.00 3.02
598 599 5.964477 TCCATCTATTCCCTTACACTTCAGT 59.036 40.000 0.00 0.00 0.00 3.41
673 674 0.395311 CGAGTCCCTAGCCAGGTACA 60.395 60.000 0.00 0.00 40.79 2.90
715 729 3.963129 CCTCCAAGGTAAATAACTGCCA 58.037 45.455 0.00 0.00 0.00 4.92
717 731 4.331968 CTCCAAGGTAAATAACTGCCACA 58.668 43.478 0.00 0.00 0.00 4.17
719 733 4.764823 TCCAAGGTAAATAACTGCCACAAG 59.235 41.667 0.00 0.00 0.00 3.16
777 796 0.389948 CCCTGCACCGACAACTAGAC 60.390 60.000 0.00 0.00 0.00 2.59
779 798 1.066858 CCTGCACCGACAACTAGACAT 60.067 52.381 0.00 0.00 0.00 3.06
780 799 1.995484 CTGCACCGACAACTAGACATG 59.005 52.381 0.00 0.00 0.00 3.21
863 882 7.539712 ACTCCATCAAAACAGTATCATAACG 57.460 36.000 0.00 0.00 0.00 3.18
878 897 5.670792 TCATAACGTCCATAGGAGTTTGT 57.329 39.130 0.00 0.00 29.39 2.83
880 899 5.421056 TCATAACGTCCATAGGAGTTTGTCT 59.579 40.000 0.00 0.00 29.39 3.41
950 2326 1.531423 AGCACTCACCTCTTGCATTG 58.469 50.000 0.00 0.00 38.81 2.82
996 2372 4.317529 GCTTCAGAGCTCGGATCG 57.682 61.111 17.52 12.36 45.65 3.69
1042 2418 1.603678 CGCAACAATGGAGCTTGCTTT 60.604 47.619 3.07 0.00 38.52 3.51
1048 2424 1.457346 ATGGAGCTTGCTTTTCTCGG 58.543 50.000 0.00 0.00 0.00 4.63
1056 2432 2.903547 GCTTTTCTCGGTTGCGGCA 61.904 57.895 0.00 0.00 0.00 5.69
1315 2691 8.073768 AGCACGGTAAATAAATTAAATCCATCG 58.926 33.333 0.00 0.00 0.00 3.84
1398 2774 2.288666 GGTCACTTGTTCAGACTTGCA 58.711 47.619 0.00 0.00 32.98 4.08
1411 2787 4.077300 AGACTTGCATGTCTGAAACTCA 57.923 40.909 28.75 0.00 44.64 3.41
1414 2790 3.567164 ACTTGCATGTCTGAAACTCAAGG 59.433 43.478 12.63 0.60 36.08 3.61
1420 2796 3.470709 TGTCTGAAACTCAAGGAAGCTG 58.529 45.455 0.00 0.00 0.00 4.24
1425 2801 5.829924 TCTGAAACTCAAGGAAGCTGAAAAT 59.170 36.000 0.00 0.00 0.00 1.82
1508 2884 0.537188 AACTGGTGCGGGAGATACTG 59.463 55.000 0.00 0.00 0.00 2.74
1663 3039 1.230324 GAGAAACTCAAGGCAAGCGT 58.770 50.000 0.00 0.00 0.00 5.07
1677 3053 2.820330 CAAGCGTGAAAACCAAACCAT 58.180 42.857 0.00 0.00 0.00 3.55
1679 3055 2.028130 AGCGTGAAAACCAAACCATGA 58.972 42.857 0.00 0.00 0.00 3.07
1682 3058 2.223688 CGTGAAAACCAAACCATGAGCA 60.224 45.455 0.00 0.00 0.00 4.26
1685 3061 4.815846 GTGAAAACCAAACCATGAGCAATT 59.184 37.500 0.00 0.00 0.00 2.32
1690 3066 4.779696 ACCAAACCATGAGCAATTGTTTT 58.220 34.783 7.40 0.00 33.11 2.43
1729 3105 2.106338 TCAGAACATGCAACTCCAAGGA 59.894 45.455 0.00 0.00 0.00 3.36
1760 3137 4.645956 CTCGCTTTGTCTGAATGATGTTC 58.354 43.478 0.00 0.00 0.00 3.18
1842 3228 1.033574 GTGACTAGGTGGGAGGATCG 58.966 60.000 0.00 0.00 34.37 3.69
1870 3256 1.107538 CCGACGAGGCCAAGGAGATA 61.108 60.000 5.01 0.00 0.00 1.98
1918 3304 3.823330 GGCGACGTGATCTCCCGT 61.823 66.667 0.00 5.55 40.54 5.28
2002 3388 2.422479 CCAGAATGTGGTGAAGATGCTG 59.578 50.000 0.00 0.00 42.17 4.41
2044 3435 3.655276 TTCAAGTGAGTCTCCCGTTAC 57.345 47.619 0.00 0.00 0.00 2.50
2055 3459 0.599558 TCCCGTTACACTCTTGGTCG 59.400 55.000 0.00 0.00 0.00 4.79
2086 3494 0.973632 TACCCGCTTGTGATCACTGT 59.026 50.000 25.55 14.61 0.00 3.55
2104 3512 2.614057 CTGTTCTTGCTCGGTTTTGTCT 59.386 45.455 0.00 0.00 0.00 3.41
2106 3514 3.442273 TGTTCTTGCTCGGTTTTGTCTTT 59.558 39.130 0.00 0.00 0.00 2.52
2109 3517 0.941542 TGCTCGGTTTTGTCTTTCCG 59.058 50.000 0.00 0.00 43.65 4.30
2155 3563 4.675029 ACGGGTGAAGGCGAACGG 62.675 66.667 0.00 0.00 0.00 4.44
2194 3602 1.002033 GCTGAAAGGCATAATCGGCAG 60.002 52.381 11.67 0.00 43.39 4.85
2203 3611 1.274728 CATAATCGGCAGGAGGGAGAG 59.725 57.143 0.00 0.00 0.00 3.20
2333 3753 4.766970 GACATCATCGGGGAGCTG 57.233 61.111 0.00 0.00 0.00 4.24
2736 4251 3.730761 CCGGGAACTCGTCGTCGT 61.731 66.667 1.33 0.00 38.33 4.34
2801 4316 0.109272 AGAACTTCGCGCTCATCGAA 60.109 50.000 5.56 0.00 42.74 3.71
2933 4451 4.323792 CCCATCCTGCTCAAGAAACTCTAA 60.324 45.833 0.00 0.00 0.00 2.10
2934 4452 4.874966 CCATCCTGCTCAAGAAACTCTAAG 59.125 45.833 0.00 0.00 0.00 2.18
2935 4453 5.486526 CATCCTGCTCAAGAAACTCTAAGT 58.513 41.667 0.00 0.00 0.00 2.24
2936 4454 5.140747 TCCTGCTCAAGAAACTCTAAGTC 57.859 43.478 0.00 0.00 0.00 3.01
2937 4455 4.835615 TCCTGCTCAAGAAACTCTAAGTCT 59.164 41.667 0.00 0.00 0.00 3.24
2938 4456 5.047660 TCCTGCTCAAGAAACTCTAAGTCTC 60.048 44.000 0.00 0.00 0.00 3.36
2940 4458 6.161855 TGCTCAAGAAACTCTAAGTCTCAA 57.838 37.500 0.00 0.00 0.00 3.02
2941 4459 5.986135 TGCTCAAGAAACTCTAAGTCTCAAC 59.014 40.000 0.00 0.00 0.00 3.18
2942 4460 5.986135 GCTCAAGAAACTCTAAGTCTCAACA 59.014 40.000 0.00 0.00 0.00 3.33
2943 4461 6.648725 GCTCAAGAAACTCTAAGTCTCAACAT 59.351 38.462 0.00 0.00 0.00 2.71
2944 4462 7.359933 GCTCAAGAAACTCTAAGTCTCAACATG 60.360 40.741 0.00 0.00 0.00 3.21
2947 4465 5.931146 AGAAACTCTAAGTCTCAACATGCTG 59.069 40.000 0.00 0.00 0.00 4.41
2948 4466 4.881019 ACTCTAAGTCTCAACATGCTGT 57.119 40.909 0.00 0.00 0.00 4.40
2950 4468 4.526262 ACTCTAAGTCTCAACATGCTGTCT 59.474 41.667 0.00 0.00 0.00 3.41
2951 4469 5.011533 ACTCTAAGTCTCAACATGCTGTCTT 59.988 40.000 0.00 1.52 0.00 3.01
2952 4470 6.209589 ACTCTAAGTCTCAACATGCTGTCTTA 59.790 38.462 0.00 2.55 0.00 2.10
2989 4507 4.082679 AGCGTACTGTAAACCAAGAGAGAG 60.083 45.833 0.00 0.00 0.00 3.20
2990 4508 4.734917 CGTACTGTAAACCAAGAGAGAGG 58.265 47.826 0.00 0.00 0.00 3.69
2991 4509 4.217983 CGTACTGTAAACCAAGAGAGAGGT 59.782 45.833 0.00 0.00 40.61 3.85
2992 4510 5.413833 CGTACTGTAAACCAAGAGAGAGGTA 59.586 44.000 0.00 0.00 37.07 3.08
2993 4511 5.725325 ACTGTAAACCAAGAGAGAGGTAC 57.275 43.478 0.00 0.00 37.07 3.34
2998 4516 6.553852 TGTAAACCAAGAGAGAGGTACTTCTT 59.446 38.462 9.12 0.00 41.55 2.52
2999 4517 5.731957 AACCAAGAGAGAGGTACTTCTTC 57.268 43.478 9.12 8.59 41.55 2.87
3000 4518 4.090819 ACCAAGAGAGAGGTACTTCTTCC 58.909 47.826 9.12 4.46 41.55 3.46
3003 4521 3.613030 AGAGAGAGGTACTTCTTCCGTC 58.387 50.000 9.12 4.59 41.55 4.79
3004 4522 2.684374 GAGAGAGGTACTTCTTCCGTCC 59.316 54.545 9.12 0.00 41.55 4.79
3007 4525 4.166531 AGAGAGGTACTTCTTCCGTCCTAT 59.833 45.833 9.12 0.00 41.55 2.57
3009 4527 6.011122 AGAGGTACTTCTTCCGTCCTATAA 57.989 41.667 0.82 0.00 41.55 0.98
3010 4528 6.612741 AGAGGTACTTCTTCCGTCCTATAAT 58.387 40.000 0.82 0.00 41.55 1.28
3011 4529 7.753630 AGAGGTACTTCTTCCGTCCTATAATA 58.246 38.462 0.82 0.00 41.55 0.98
3012 4530 8.392479 AGAGGTACTTCTTCCGTCCTATAATAT 58.608 37.037 0.82 0.00 41.55 1.28
3018 4536 8.741841 ACTTCTTCCGTCCTATAATATAAGAGC 58.258 37.037 0.00 0.00 0.00 4.09
3019 4537 7.317842 TCTTCCGTCCTATAATATAAGAGCG 57.682 40.000 0.00 0.00 0.00 5.03
3020 4538 6.883217 TCTTCCGTCCTATAATATAAGAGCGT 59.117 38.462 0.00 0.00 0.00 5.07
3021 4539 7.392673 TCTTCCGTCCTATAATATAAGAGCGTT 59.607 37.037 0.00 0.00 0.00 4.84
3022 4540 7.458409 TCCGTCCTATAATATAAGAGCGTTT 57.542 36.000 0.00 0.00 0.00 3.60
3023 4541 7.889469 TCCGTCCTATAATATAAGAGCGTTTT 58.111 34.615 0.00 0.00 0.00 2.43
3024 4542 8.362639 TCCGTCCTATAATATAAGAGCGTTTTT 58.637 33.333 0.00 0.00 0.00 1.94
3025 4543 8.433126 CCGTCCTATAATATAAGAGCGTTTTTG 58.567 37.037 0.00 0.00 0.00 2.44
3026 4544 9.188588 CGTCCTATAATATAAGAGCGTTTTTGA 57.811 33.333 0.00 0.00 0.00 2.69
3033 4551 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
3034 4552 9.865321 AATATAAGAGCGTTTTTGACACTAGTA 57.135 29.630 0.00 0.00 0.00 1.82
3037 4555 7.813852 AAGAGCGTTTTTGACACTAGTATAG 57.186 36.000 0.00 0.00 46.50 1.31
3068 4586 9.590451 AAAAACGTTCTTATATTATGAGACGGA 57.410 29.630 0.00 0.00 0.00 4.69
3069 4587 8.798748 AAACGTTCTTATATTATGAGACGGAG 57.201 34.615 0.00 6.40 0.00 4.63
3070 4588 6.910995 ACGTTCTTATATTATGAGACGGAGG 58.089 40.000 16.71 6.29 0.00 4.30
3071 4589 6.072064 ACGTTCTTATATTATGAGACGGAGGG 60.072 42.308 16.71 2.79 0.00 4.30
3072 4590 6.150641 CGTTCTTATATTATGAGACGGAGGGA 59.849 42.308 0.00 0.00 0.00 4.20
3101 4625 8.446599 TTTGTTTGTTTTCTGGGTTTTGTTTA 57.553 26.923 0.00 0.00 0.00 2.01
3164 4702 7.703058 TCCATCGTCTCATAATATAAGAGCA 57.297 36.000 0.00 0.00 0.00 4.26
3167 4705 8.815189 CCATCGTCTCATAATATAAGAGCATTG 58.185 37.037 0.00 0.00 0.00 2.82
3196 4738 5.114764 ACTAGTGGAGGGAGTAGTAGTTC 57.885 47.826 0.00 0.00 31.48 3.01
3201 4743 6.308566 AGTGGAGGGAGTAGTAGTTCATATC 58.691 44.000 0.00 0.00 0.00 1.63
3243 4790 1.073763 TCCAAACCAGTGCTGCACTAT 59.926 47.619 32.51 21.53 43.43 2.12
3253 4800 0.386838 GCTGCACTATTGGGGATTGC 59.613 55.000 0.00 0.00 0.00 3.56
3269 4816 1.921982 TTGCCCTGCAATTCAAGCTA 58.078 45.000 0.00 0.00 43.99 3.32
3270 4817 1.466856 TGCCCTGCAATTCAAGCTAG 58.533 50.000 0.00 0.00 34.76 3.42
3271 4818 0.101939 GCCCTGCAATTCAAGCTAGC 59.898 55.000 6.62 6.62 0.00 3.42
3272 4819 1.466856 CCCTGCAATTCAAGCTAGCA 58.533 50.000 18.83 0.00 0.00 3.49
3273 4820 2.029623 CCCTGCAATTCAAGCTAGCAT 58.970 47.619 18.83 0.65 34.35 3.79
3274 4821 2.034305 CCCTGCAATTCAAGCTAGCATC 59.966 50.000 18.83 0.00 34.35 3.91
3275 4822 2.034305 CCTGCAATTCAAGCTAGCATCC 59.966 50.000 18.83 0.00 34.35 3.51
3276 4823 2.950309 CTGCAATTCAAGCTAGCATCCT 59.050 45.455 18.83 0.00 34.35 3.24
3277 4824 2.947652 TGCAATTCAAGCTAGCATCCTC 59.052 45.455 18.83 0.00 0.00 3.71
3278 4825 2.292845 GCAATTCAAGCTAGCATCCTCC 59.707 50.000 18.83 0.00 0.00 4.30
3279 4826 3.548770 CAATTCAAGCTAGCATCCTCCA 58.451 45.455 18.83 0.00 0.00 3.86
3288 4837 3.376546 GCTAGCATCCTCCAGTCAAAAAG 59.623 47.826 10.63 0.00 0.00 2.27
3298 4847 6.434028 TCCTCCAGTCAAAAAGATAACAATGG 59.566 38.462 0.00 0.00 0.00 3.16
3317 4866 7.613585 ACAATGGACAATTTAGCATGAATCAA 58.386 30.769 0.00 0.00 0.00 2.57
3398 6386 6.653526 AACATTTTTGTGATGATCAGGTCA 57.346 33.333 0.09 0.00 42.06 4.02
3403 6391 6.653526 TTTTGTGATGATCAGGTCAACAAT 57.346 33.333 0.09 0.00 40.71 2.71
3404 6392 5.885230 TTGTGATGATCAGGTCAACAATC 57.115 39.130 0.09 0.00 40.71 2.67
3416 6404 4.036380 AGGTCAACAATCGTTTCCAGTTTC 59.964 41.667 0.00 0.00 31.13 2.78
3422 6410 4.035208 ACAATCGTTTCCAGTTTCAGTGTC 59.965 41.667 0.00 0.00 0.00 3.67
3425 6413 2.287915 CGTTTCCAGTTTCAGTGTCAGG 59.712 50.000 0.00 0.00 0.00 3.86
3439 6435 2.939103 GTGTCAGGCACCAGTTCATATC 59.061 50.000 0.00 0.00 42.10 1.63
3443 6439 4.641989 GTCAGGCACCAGTTCATATCATTT 59.358 41.667 0.00 0.00 0.00 2.32
3444 6440 5.126061 GTCAGGCACCAGTTCATATCATTTT 59.874 40.000 0.00 0.00 0.00 1.82
3468 6465 9.743057 TTTGTATATGACTGGAAAAACTTTGTG 57.257 29.630 0.00 0.00 0.00 3.33
3469 6466 8.458573 TGTATATGACTGGAAAAACTTTGTGT 57.541 30.769 0.00 0.00 0.00 3.72
3472 6469 3.194542 TGACTGGAAAAACTTTGTGTGGG 59.805 43.478 0.00 0.00 0.00 4.61
3473 6470 3.169908 ACTGGAAAAACTTTGTGTGGGT 58.830 40.909 0.00 0.00 0.00 4.51
3474 6471 3.056179 ACTGGAAAAACTTTGTGTGGGTG 60.056 43.478 0.00 0.00 0.00 4.61
3475 6472 2.276201 GGAAAAACTTTGTGTGGGTGC 58.724 47.619 0.00 0.00 0.00 5.01
3476 6473 2.354203 GGAAAAACTTTGTGTGGGTGCA 60.354 45.455 0.00 0.00 0.00 4.57
3477 6474 3.330267 GAAAAACTTTGTGTGGGTGCAA 58.670 40.909 0.00 0.00 0.00 4.08
3478 6475 3.409026 AAAACTTTGTGTGGGTGCAAA 57.591 38.095 0.00 0.00 34.05 3.68
3479 6476 3.409026 AAACTTTGTGTGGGTGCAAAA 57.591 38.095 0.00 0.00 34.68 2.44
3480 6477 2.671130 ACTTTGTGTGGGTGCAAAAG 57.329 45.000 3.77 3.77 34.68 2.27
3481 6478 1.899142 ACTTTGTGTGGGTGCAAAAGT 59.101 42.857 4.91 4.91 34.68 2.66
3482 6479 2.094234 ACTTTGTGTGGGTGCAAAAGTC 60.094 45.455 4.91 0.00 34.68 3.01
3483 6480 1.550327 TTGTGTGGGTGCAAAAGTCA 58.450 45.000 0.00 0.00 0.00 3.41
3491 6495 3.196469 TGGGTGCAAAAGTCAAACATCAA 59.804 39.130 0.00 0.00 0.00 2.57
3507 6511 4.870363 ACATCAACGAATGGTGGAAAAAG 58.130 39.130 10.19 0.00 44.94 2.27
3511 6515 2.514803 ACGAATGGTGGAAAAAGGAGG 58.485 47.619 0.00 0.00 0.00 4.30
3530 6534 5.911178 AGGAGGGTAGAAATTCATACATGGA 59.089 40.000 0.00 0.00 0.00 3.41
3532 6536 6.043243 GGAGGGTAGAAATTCATACATGGAGA 59.957 42.308 0.00 0.00 0.00 3.71
3536 6540 8.429641 GGGTAGAAATTCATACATGGAGACTAA 58.570 37.037 0.00 0.00 0.00 2.24
3590 6594 9.965824 ATTAGAACAAAATGGTTTACACTGAAG 57.034 29.630 0.00 0.00 0.00 3.02
3595 6599 7.836842 ACAAAATGGTTTACACTGAAGACTTT 58.163 30.769 0.00 0.00 0.00 2.66
3608 6612 9.071276 ACACTGAAGACTTTTGATTGATACAAT 57.929 29.630 0.00 0.00 0.00 2.71
3682 6686 8.484641 AGCCAAACTATGATGATGTATAATCG 57.515 34.615 0.00 0.00 0.00 3.34
3699 6703 8.884726 TGTATAATCGATGACTAGCTCTCATAC 58.115 37.037 0.00 2.03 0.00 2.39
3709 6713 8.706322 TGACTAGCTCTCATACCATACATTTA 57.294 34.615 0.00 0.00 0.00 1.40
3735 6756 2.731572 CATCCAGGATTTCCAGCTTGT 58.268 47.619 0.00 0.00 38.89 3.16
3736 6757 2.978156 TCCAGGATTTCCAGCTTGTT 57.022 45.000 0.00 0.00 38.89 2.83
3756 6786 4.080243 TGTTGTTTCCTCCACCAGTAAGAA 60.080 41.667 0.00 0.00 0.00 2.52
3773 6807 8.399425 CCAGTAAGAACTACATAGACTACACTG 58.601 40.741 15.29 15.29 33.48 3.66
3796 6831 4.985538 ACATCACAAAACTGGTAGTCCAT 58.014 39.130 0.00 0.00 43.43 3.41
3813 6851 4.825085 AGTCCATCCTCTCTTCGATAGTTC 59.175 45.833 0.00 0.00 37.40 3.01
3875 6916 1.860950 CAAGAGACACCAGTGAACACG 59.139 52.381 4.48 0.00 36.20 4.49
3881 6922 0.110688 CACCAGTGAACACGAATGCG 60.111 55.000 0.00 0.00 44.79 4.73
3893 6934 3.932710 ACACGAATGCGAGTGACAAATAT 59.067 39.130 0.00 0.00 39.80 1.28
3903 6944 9.657419 ATGCGAGTGACAAATATGATTATATGA 57.343 29.630 0.00 0.00 30.00 2.15
3904 6945 9.487790 TGCGAGTGACAAATATGATTATATGAA 57.512 29.630 0.00 0.00 30.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.681097 GCAGGAAGAAGACACCATACCC 60.681 54.545 0.00 0.00 0.00 3.69
61 62 5.620206 TGTTCTTGATTGTAGCAGGAAGAA 58.380 37.500 0.00 0.00 32.94 2.52
81 82 2.608623 CCCACCTTCCTTGGAAATGTT 58.391 47.619 3.54 0.00 36.02 2.71
128 129 0.390866 CTGTCGACAGAGCCTTGCAT 60.391 55.000 36.73 0.00 46.59 3.96
194 195 0.618458 ACGTGGGGGTAGTAGTCGTA 59.382 55.000 0.00 0.00 0.00 3.43
197 198 0.678048 ACGACGTGGGGGTAGTAGTC 60.678 60.000 0.00 0.00 0.00 2.59
198 199 0.251341 AACGACGTGGGGGTAGTAGT 60.251 55.000 0.00 0.00 0.00 2.73
236 237 2.047560 AAAGTCGCGGTGGTAGCC 60.048 61.111 6.13 0.00 0.00 3.93
237 238 1.352156 CTCAAAGTCGCGGTGGTAGC 61.352 60.000 6.13 0.00 0.00 3.58
240 241 2.665185 GCTCAAAGTCGCGGTGGT 60.665 61.111 6.13 0.00 0.00 4.16
241 242 2.357517 AGCTCAAAGTCGCGGTGG 60.358 61.111 6.13 0.00 0.00 4.61
242 243 2.671177 CCAGCTCAAAGTCGCGGTG 61.671 63.158 6.13 0.00 0.00 4.94
243 244 2.357517 CCAGCTCAAAGTCGCGGT 60.358 61.111 6.13 0.00 0.00 5.68
244 245 2.357517 ACCAGCTCAAAGTCGCGG 60.358 61.111 6.13 0.00 0.00 6.46
245 246 1.664649 TGACCAGCTCAAAGTCGCG 60.665 57.895 0.00 0.00 33.09 5.87
246 247 1.862806 GTGACCAGCTCAAAGTCGC 59.137 57.895 0.00 0.00 34.27 5.19
247 248 1.284982 CCGTGACCAGCTCAAAGTCG 61.285 60.000 0.00 0.00 33.09 4.18
248 249 0.033504 TCCGTGACCAGCTCAAAGTC 59.966 55.000 0.00 0.00 0.00 3.01
249 250 0.249911 GTCCGTGACCAGCTCAAAGT 60.250 55.000 0.00 0.00 0.00 2.66
250 251 2.533318 GTCCGTGACCAGCTCAAAG 58.467 57.895 0.00 0.00 0.00 2.77
251 252 4.771127 GTCCGTGACCAGCTCAAA 57.229 55.556 0.00 0.00 0.00 2.69
260 261 1.741770 GCACTCCATGGTCCGTGAC 60.742 63.158 25.14 16.50 0.00 3.67
261 262 1.763546 TTGCACTCCATGGTCCGTGA 61.764 55.000 25.14 13.45 0.00 4.35
262 263 0.677731 ATTGCACTCCATGGTCCGTG 60.678 55.000 12.58 17.37 0.00 4.94
263 264 0.677731 CATTGCACTCCATGGTCCGT 60.678 55.000 12.58 4.96 0.00 4.69
264 265 1.378882 CCATTGCACTCCATGGTCCG 61.379 60.000 12.58 4.29 0.00 4.79
265 266 1.039233 CCCATTGCACTCCATGGTCC 61.039 60.000 12.58 0.00 32.48 4.46
266 267 0.034186 TCCCATTGCACTCCATGGTC 60.034 55.000 12.58 0.47 32.48 4.02
267 268 0.632835 ATCCCATTGCACTCCATGGT 59.367 50.000 12.58 0.00 32.48 3.55
268 269 1.133575 AGATCCCATTGCACTCCATGG 60.134 52.381 4.97 4.97 0.00 3.66
269 270 1.954382 CAGATCCCATTGCACTCCATG 59.046 52.381 0.00 0.00 0.00 3.66
270 271 1.133575 CCAGATCCCATTGCACTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
271 272 0.256752 CCAGATCCCATTGCACTCCA 59.743 55.000 0.00 0.00 0.00 3.86
272 273 0.548031 TCCAGATCCCATTGCACTCC 59.452 55.000 0.00 0.00 0.00 3.85
273 274 1.673168 GTCCAGATCCCATTGCACTC 58.327 55.000 0.00 0.00 0.00 3.51
274 275 0.107508 CGTCCAGATCCCATTGCACT 60.108 55.000 0.00 0.00 0.00 4.40
275 276 1.097547 CCGTCCAGATCCCATTGCAC 61.098 60.000 0.00 0.00 0.00 4.57
276 277 1.224315 CCGTCCAGATCCCATTGCA 59.776 57.895 0.00 0.00 0.00 4.08
277 278 0.394352 AACCGTCCAGATCCCATTGC 60.394 55.000 0.00 0.00 0.00 3.56
278 279 1.210478 AGAACCGTCCAGATCCCATTG 59.790 52.381 0.00 0.00 0.00 2.82
279 280 1.584724 AGAACCGTCCAGATCCCATT 58.415 50.000 0.00 0.00 0.00 3.16
280 281 1.210478 CAAGAACCGTCCAGATCCCAT 59.790 52.381 0.00 0.00 0.00 4.00
281 282 0.613260 CAAGAACCGTCCAGATCCCA 59.387 55.000 0.00 0.00 0.00 4.37
282 283 0.107654 CCAAGAACCGTCCAGATCCC 60.108 60.000 0.00 0.00 0.00 3.85
283 284 0.107654 CCCAAGAACCGTCCAGATCC 60.108 60.000 0.00 0.00 0.00 3.36
284 285 0.902531 TCCCAAGAACCGTCCAGATC 59.097 55.000 0.00 0.00 0.00 2.75
285 286 0.905357 CTCCCAAGAACCGTCCAGAT 59.095 55.000 0.00 0.00 0.00 2.90
286 287 1.827399 GCTCCCAAGAACCGTCCAGA 61.827 60.000 0.00 0.00 0.00 3.86
287 288 1.376037 GCTCCCAAGAACCGTCCAG 60.376 63.158 0.00 0.00 0.00 3.86
288 289 2.747686 GCTCCCAAGAACCGTCCA 59.252 61.111 0.00 0.00 0.00 4.02
289 290 2.046217 GGCTCCCAAGAACCGTCC 60.046 66.667 0.00 0.00 0.00 4.79
290 291 2.046217 GGGCTCCCAAGAACCGTC 60.046 66.667 0.00 0.00 35.81 4.79
291 292 3.647771 GGGGCTCCCAAGAACCGT 61.648 66.667 7.34 0.00 44.65 4.83
307 308 3.687102 TACACGTGCAGGACCGGG 61.687 66.667 17.22 3.97 0.00 5.73
308 309 2.431942 GTACACGTGCAGGACCGG 60.432 66.667 17.22 0.00 0.00 5.28
309 310 1.080093 ATGTACACGTGCAGGACCG 60.080 57.895 17.22 2.71 0.00 4.79
310 311 1.019278 CCATGTACACGTGCAGGACC 61.019 60.000 17.22 0.00 0.00 4.46
311 312 1.019278 CCCATGTACACGTGCAGGAC 61.019 60.000 17.22 9.40 0.00 3.85
312 313 1.295101 CCCATGTACACGTGCAGGA 59.705 57.895 17.22 0.00 0.00 3.86
313 314 2.398554 GCCCATGTACACGTGCAGG 61.399 63.158 17.22 8.19 0.00 4.85
314 315 2.398554 GGCCCATGTACACGTGCAG 61.399 63.158 17.22 0.71 0.00 4.41
315 316 2.359354 GGCCCATGTACACGTGCA 60.359 61.111 17.22 6.92 0.00 4.57
316 317 2.359354 TGGCCCATGTACACGTGC 60.359 61.111 17.22 0.00 0.00 5.34
317 318 1.745115 CCTGGCCCATGTACACGTG 60.745 63.158 15.48 15.48 0.00 4.49
318 319 2.668632 CCTGGCCCATGTACACGT 59.331 61.111 0.00 0.00 0.00 4.49
319 320 2.824041 GCCTGGCCCATGTACACG 60.824 66.667 7.66 0.00 0.00 4.49
320 321 2.440247 GGCCTGGCCCATGTACAC 60.440 66.667 27.77 0.00 44.06 2.90
340 341 2.670934 CTCAGGGTGGTGCACAGC 60.671 66.667 20.43 13.81 46.68 4.40
341 342 2.670934 GCTCAGGGTGGTGCACAG 60.671 66.667 20.43 6.45 35.86 3.66
342 343 4.624364 CGCTCAGGGTGGTGCACA 62.624 66.667 20.43 1.62 35.86 4.57
352 353 3.774528 TAGTGGGCAGCGCTCAGG 61.775 66.667 7.13 0.00 40.90 3.86
353 354 2.510238 GTAGTGGGCAGCGCTCAG 60.510 66.667 7.13 0.00 40.90 3.35
354 355 2.786539 CTTGTAGTGGGCAGCGCTCA 62.787 60.000 7.13 0.00 36.30 4.26
355 356 2.047274 TTGTAGTGGGCAGCGCTC 60.047 61.111 7.13 7.24 0.00 5.03
356 357 1.541310 TACTTGTAGTGGGCAGCGCT 61.541 55.000 2.64 2.64 0.00 5.92
357 358 0.462047 ATACTTGTAGTGGGCAGCGC 60.462 55.000 0.00 0.00 0.00 5.92
358 359 1.137086 AGATACTTGTAGTGGGCAGCG 59.863 52.381 0.00 0.00 0.00 5.18
359 360 2.555199 CAGATACTTGTAGTGGGCAGC 58.445 52.381 0.00 0.00 0.00 5.25
360 361 2.158900 CCCAGATACTTGTAGTGGGCAG 60.159 54.545 14.40 0.00 41.53 4.85
361 362 1.837439 CCCAGATACTTGTAGTGGGCA 59.163 52.381 14.40 0.00 41.53 5.36
362 363 1.141053 CCCCAGATACTTGTAGTGGGC 59.859 57.143 18.57 0.00 45.81 5.36
363 364 1.141053 GCCCCAGATACTTGTAGTGGG 59.859 57.143 17.66 17.66 46.61 4.61
364 365 1.837439 TGCCCCAGATACTTGTAGTGG 59.163 52.381 5.45 5.45 0.00 4.00
365 366 2.501723 ACTGCCCCAGATACTTGTAGTG 59.498 50.000 0.00 0.00 35.18 2.74
366 367 2.834113 ACTGCCCCAGATACTTGTAGT 58.166 47.619 0.00 0.00 35.18 2.73
367 368 3.914426 AACTGCCCCAGATACTTGTAG 57.086 47.619 0.00 0.00 35.18 2.74
368 369 3.329520 ACAAACTGCCCCAGATACTTGTA 59.670 43.478 0.00 0.00 35.18 2.41
369 370 2.108250 ACAAACTGCCCCAGATACTTGT 59.892 45.455 0.00 1.38 35.18 3.16
370 371 2.749621 GACAAACTGCCCCAGATACTTG 59.250 50.000 0.00 0.85 35.18 3.16
371 372 2.644798 AGACAAACTGCCCCAGATACTT 59.355 45.455 0.00 0.00 35.18 2.24
372 373 2.237392 GAGACAAACTGCCCCAGATACT 59.763 50.000 0.00 0.00 35.18 2.12
373 374 2.027192 TGAGACAAACTGCCCCAGATAC 60.027 50.000 0.00 0.00 35.18 2.24
374 375 2.265367 TGAGACAAACTGCCCCAGATA 58.735 47.619 0.00 0.00 35.18 1.98
375 376 1.067295 TGAGACAAACTGCCCCAGAT 58.933 50.000 0.00 0.00 35.18 2.90
376 377 0.843309 TTGAGACAAACTGCCCCAGA 59.157 50.000 0.00 0.00 35.18 3.86
377 378 1.691196 TTTGAGACAAACTGCCCCAG 58.309 50.000 0.00 0.00 37.52 4.45
378 379 2.151502 TTTTGAGACAAACTGCCCCA 57.848 45.000 0.00 0.00 0.00 4.96
400 401 3.330701 TGTCTCTGCCCCAGATACTTTTT 59.669 43.478 10.69 0.00 39.92 1.94
401 402 2.912956 TGTCTCTGCCCCAGATACTTTT 59.087 45.455 10.69 0.00 39.92 2.27
402 403 2.503356 CTGTCTCTGCCCCAGATACTTT 59.497 50.000 10.69 0.00 39.92 2.66
403 404 2.114616 CTGTCTCTGCCCCAGATACTT 58.885 52.381 10.69 0.00 39.92 2.24
404 405 1.786937 CTGTCTCTGCCCCAGATACT 58.213 55.000 10.69 0.00 39.92 2.12
405 406 0.105778 GCTGTCTCTGCCCCAGATAC 59.894 60.000 4.40 4.40 39.92 2.24
406 407 0.325577 TGCTGTCTCTGCCCCAGATA 60.326 55.000 0.00 0.00 39.92 1.98
407 408 1.203441 TTGCTGTCTCTGCCCCAGAT 61.203 55.000 0.00 0.00 39.92 2.90
408 409 1.418097 TTTGCTGTCTCTGCCCCAGA 61.418 55.000 0.00 0.00 38.25 3.86
409 410 1.073722 TTTGCTGTCTCTGCCCCAG 59.926 57.895 0.00 0.00 0.00 4.45
410 411 1.228245 GTTTGCTGTCTCTGCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
411 412 1.228245 TGTTTGCTGTCTCTGCCCC 60.228 57.895 0.00 0.00 0.00 5.80
412 413 0.250467 TCTGTTTGCTGTCTCTGCCC 60.250 55.000 0.00 0.00 0.00 5.36
413 414 1.736681 GATCTGTTTGCTGTCTCTGCC 59.263 52.381 0.00 0.00 0.00 4.85
414 415 2.420642 TGATCTGTTTGCTGTCTCTGC 58.579 47.619 0.00 0.00 0.00 4.26
415 416 3.622163 GGATGATCTGTTTGCTGTCTCTG 59.378 47.826 0.00 0.00 0.00 3.35
416 417 3.262660 TGGATGATCTGTTTGCTGTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
417 418 3.603532 TGGATGATCTGTTTGCTGTCTC 58.396 45.455 0.00 0.00 0.00 3.36
418 419 3.008813 ACTGGATGATCTGTTTGCTGTCT 59.991 43.478 0.00 0.00 0.00 3.41
419 420 3.126514 CACTGGATGATCTGTTTGCTGTC 59.873 47.826 0.00 0.00 0.00 3.51
420 421 3.079578 CACTGGATGATCTGTTTGCTGT 58.920 45.455 0.00 0.00 0.00 4.40
421 422 2.422479 CCACTGGATGATCTGTTTGCTG 59.578 50.000 0.00 0.00 0.00 4.41
422 423 2.306805 TCCACTGGATGATCTGTTTGCT 59.693 45.455 0.00 0.00 0.00 3.91
423 424 2.715046 TCCACTGGATGATCTGTTTGC 58.285 47.619 0.00 0.00 0.00 3.68
424 425 4.334759 GTGATCCACTGGATGATCTGTTTG 59.665 45.833 15.78 0.00 43.27 2.93
425 426 4.521146 GTGATCCACTGGATGATCTGTTT 58.479 43.478 15.78 0.00 43.27 2.83
426 427 3.431346 CGTGATCCACTGGATGATCTGTT 60.431 47.826 15.78 0.00 43.27 3.16
427 428 2.102084 CGTGATCCACTGGATGATCTGT 59.898 50.000 15.78 0.00 43.27 3.41
428 429 2.547430 CCGTGATCCACTGGATGATCTG 60.547 54.545 15.78 1.91 43.27 2.90
429 430 1.690893 CCGTGATCCACTGGATGATCT 59.309 52.381 15.78 0.00 43.27 2.75
430 431 1.875576 GCCGTGATCCACTGGATGATC 60.876 57.143 15.78 2.79 43.27 2.92
431 432 0.107456 GCCGTGATCCACTGGATGAT 59.893 55.000 15.78 0.00 43.27 2.45
432 433 1.522092 GCCGTGATCCACTGGATGA 59.478 57.895 15.78 3.94 43.27 2.92
433 434 1.884464 CGCCGTGATCCACTGGATG 60.884 63.158 15.78 2.17 43.27 3.51
434 435 2.501128 CGCCGTGATCCACTGGAT 59.499 61.111 10.61 10.61 46.28 3.41
435 436 3.770040 CCGCCGTGATCCACTGGA 61.770 66.667 0.00 0.00 32.71 3.86
436 437 3.770040 TCCGCCGTGATCCACTGG 61.770 66.667 0.00 0.00 33.57 4.00
437 438 2.509336 GTCCGCCGTGATCCACTG 60.509 66.667 0.00 0.00 31.34 3.66
438 439 3.771160 GGTCCGCCGTGATCCACT 61.771 66.667 0.00 0.00 31.34 4.00
456 457 2.050350 GGTAAAAGGGGAAGCCGCC 61.050 63.158 0.00 0.00 45.02 6.13
457 458 0.611062 AAGGTAAAAGGGGAAGCCGC 60.611 55.000 0.00 0.00 36.67 6.53
458 459 1.816835 GAAAGGTAAAAGGGGAAGCCG 59.183 52.381 0.00 0.00 0.00 5.52
459 460 3.170991 AGAAAGGTAAAAGGGGAAGCC 57.829 47.619 0.00 0.00 0.00 4.35
460 461 3.510360 GGAAGAAAGGTAAAAGGGGAAGC 59.490 47.826 0.00 0.00 0.00 3.86
461 462 4.999310 AGGAAGAAAGGTAAAAGGGGAAG 58.001 43.478 0.00 0.00 0.00 3.46
462 463 4.202641 GGAGGAAGAAAGGTAAAAGGGGAA 60.203 45.833 0.00 0.00 0.00 3.97
463 464 3.332783 GGAGGAAGAAAGGTAAAAGGGGA 59.667 47.826 0.00 0.00 0.00 4.81
464 465 3.333980 AGGAGGAAGAAAGGTAAAAGGGG 59.666 47.826 0.00 0.00 0.00 4.79
465 466 4.659529 AGGAGGAAGAAAGGTAAAAGGG 57.340 45.455 0.00 0.00 0.00 3.95
466 467 4.767409 CCAAGGAGGAAGAAAGGTAAAAGG 59.233 45.833 0.00 0.00 41.22 3.11
467 468 4.218635 GCCAAGGAGGAAGAAAGGTAAAAG 59.781 45.833 0.00 0.00 41.22 2.27
468 469 4.141018 AGCCAAGGAGGAAGAAAGGTAAAA 60.141 41.667 0.00 0.00 41.22 1.52
469 470 3.397955 AGCCAAGGAGGAAGAAAGGTAAA 59.602 43.478 0.00 0.00 41.22 2.01
487 488 2.049185 GCACTCTCGAGAGGAGCCA 61.049 63.158 38.23 7.45 46.13 4.75
522 523 3.762288 AGTAGCAGGTTACAGTTCATCGA 59.238 43.478 0.00 0.00 0.00 3.59
556 557 1.202268 GGACACAGGGTTCGATCTACG 60.202 57.143 0.00 0.00 44.09 3.51
597 598 4.173256 GCAATTGTGTAATGGTTGGCTAC 58.827 43.478 7.40 0.00 0.00 3.58
598 599 3.829026 TGCAATTGTGTAATGGTTGGCTA 59.171 39.130 7.40 0.00 0.00 3.93
673 674 3.974642 GGTCCTAATTACCATCCTGGACT 59.025 47.826 14.16 0.00 40.96 3.85
715 729 2.378038 TGAAGAGTTTTGCAGCCTTGT 58.622 42.857 0.00 0.00 0.00 3.16
717 731 3.893813 AGAATGAAGAGTTTTGCAGCCTT 59.106 39.130 0.00 0.00 0.00 4.35
719 733 3.005155 ACAGAATGAAGAGTTTTGCAGCC 59.995 43.478 0.00 0.00 39.69 4.85
777 796 1.852280 CCATCAGTGCGTACGTACATG 59.148 52.381 32.81 26.73 33.14 3.21
779 798 0.457166 GCCATCAGTGCGTACGTACA 60.457 55.000 32.81 17.49 33.14 2.90
780 799 0.457166 TGCCATCAGTGCGTACGTAC 60.457 55.000 26.29 26.29 0.00 3.67
895 914 4.901610 TGCTATGCAGAGAGGGAAACCAA 61.902 47.826 13.69 0.00 43.80 3.67
950 2326 1.301637 GTTTGGTGTTGGGGCATGC 60.302 57.895 9.90 9.90 0.00 4.06
955 2331 1.032014 CTCACAGTTTGGTGTTGGGG 58.968 55.000 0.00 0.00 39.76 4.96
1042 2418 2.357034 GAGTGCCGCAACCGAGAA 60.357 61.111 0.00 0.00 36.29 2.87
1056 2432 1.330655 CCCACCATAGAGCCACGAGT 61.331 60.000 0.00 0.00 0.00 4.18
1184 2560 2.361230 CCAGCCGGGAAAACTCCC 60.361 66.667 2.18 0.00 46.43 4.30
1243 2619 1.523711 CCACCCGCGCTGTGATATT 60.524 57.895 23.45 0.00 35.74 1.28
1266 2642 0.246360 TGATCACGCTGTGGTACAGG 59.754 55.000 10.62 4.07 46.01 4.00
1353 2729 5.555966 TCACAGCCATGTTCACTAATAACA 58.444 37.500 0.00 0.00 40.85 2.41
1398 2774 4.070716 CAGCTTCCTTGAGTTTCAGACAT 58.929 43.478 0.00 0.00 0.00 3.06
1411 2787 3.244318 CCCTGCAAATTTTCAGCTTCCTT 60.244 43.478 11.81 0.00 0.00 3.36
1414 2790 3.665745 TCCCTGCAAATTTTCAGCTTC 57.334 42.857 11.81 0.00 0.00 3.86
1420 2796 4.439289 CGGAGATCTTCCCTGCAAATTTTC 60.439 45.833 0.00 0.00 43.63 2.29
1425 2801 0.984230 ACGGAGATCTTCCCTGCAAA 59.016 50.000 0.00 0.00 43.63 3.68
1463 2839 1.153628 GTTCACGATCACCCTCGGG 60.154 63.158 0.00 0.00 43.41 5.14
1487 2863 1.628846 AGTATCTCCCGCACCAGTTTT 59.371 47.619 0.00 0.00 0.00 2.43
1508 2884 4.966787 TGCCCGGACTTGTTGGCC 62.967 66.667 0.73 0.00 43.35 5.36
1663 3039 4.686191 ATTGCTCATGGTTTGGTTTTCA 57.314 36.364 0.00 0.00 0.00 2.69
1690 3066 6.823182 TGTTCTGACATGAAGTGAAGAGAAAA 59.177 34.615 0.00 0.00 0.00 2.29
1693 3069 5.535753 TGTTCTGACATGAAGTGAAGAGA 57.464 39.130 0.00 0.00 0.00 3.10
1743 3120 6.424509 GGCAAATTGAACATCATTCAGACAAA 59.575 34.615 0.00 0.00 0.00 2.83
1760 3137 2.481185 GCATCACAACCAAGGCAAATTG 59.519 45.455 0.00 0.00 0.00 2.32
1870 3256 3.222354 GAACTCCGGCCACACGTCT 62.222 63.158 2.24 0.00 0.00 4.18
2002 3388 2.047830 CCTGGGAGGTATAGGGTGTTC 58.952 57.143 0.00 0.00 0.00 3.18
2044 3435 0.662619 TGCAAAAGCGACCAAGAGTG 59.337 50.000 0.00 0.00 0.00 3.51
2055 3459 0.243636 AGCGGGTAATGTGCAAAAGC 59.756 50.000 0.00 0.00 0.00 3.51
2086 3494 3.066203 GGAAAGACAAAACCGAGCAAGAA 59.934 43.478 0.00 0.00 0.00 2.52
2104 3512 3.758172 GCAAGAACCTGCCGGAAA 58.242 55.556 5.05 0.00 36.25 3.13
2194 3602 2.040464 TCATGGCCCTCTCCCTCC 60.040 66.667 0.00 0.00 0.00 4.30
2203 3611 1.034292 GTTGCCTTCTCTCATGGCCC 61.034 60.000 0.00 0.00 43.53 5.80
2221 3641 2.742372 GGTCATCGTTGCTGGCGT 60.742 61.111 0.00 0.00 0.00 5.68
2333 3753 1.551145 CGGCGAAGTAGAAGAGCTTC 58.449 55.000 0.00 2.03 39.78 3.86
2484 3904 1.880027 CACCACCTTGAGCTGGTTTAC 59.120 52.381 0.00 0.00 38.84 2.01
2736 4251 2.048877 GAACGGGAAGAACGCCGA 60.049 61.111 0.00 0.00 36.61 5.54
2941 4459 8.442632 TGAGGAGATTATTTTAAGACAGCATG 57.557 34.615 0.00 0.00 46.00 4.06
2942 4460 7.228308 GCTGAGGAGATTATTTTAAGACAGCAT 59.772 37.037 0.00 0.00 43.11 3.79
2943 4461 6.540189 GCTGAGGAGATTATTTTAAGACAGCA 59.460 38.462 0.00 0.00 43.11 4.41
2944 4462 6.292596 CGCTGAGGAGATTATTTTAAGACAGC 60.293 42.308 0.00 0.00 41.18 4.40
2947 4465 7.921745 AGTACGCTGAGGAGATTATTTTAAGAC 59.078 37.037 0.00 0.00 0.00 3.01
2948 4466 7.921214 CAGTACGCTGAGGAGATTATTTTAAGA 59.079 37.037 0.00 0.00 45.28 2.10
2950 4468 7.553334 ACAGTACGCTGAGGAGATTATTTTAA 58.447 34.615 1.30 0.00 45.28 1.52
2951 4469 7.108841 ACAGTACGCTGAGGAGATTATTTTA 57.891 36.000 1.30 0.00 45.28 1.52
2952 4470 5.978814 ACAGTACGCTGAGGAGATTATTTT 58.021 37.500 1.30 0.00 45.28 1.82
2992 4510 8.741841 GCTCTTATATTATAGGACGGAAGAAGT 58.258 37.037 0.00 0.00 0.00 3.01
2993 4511 7.911205 CGCTCTTATATTATAGGACGGAAGAAG 59.089 40.741 0.00 0.00 0.00 2.85
2998 4516 7.458409 AAACGCTCTTATATTATAGGACGGA 57.542 36.000 15.28 0.00 0.00 4.69
2999 4517 8.433126 CAAAAACGCTCTTATATTATAGGACGG 58.567 37.037 15.28 5.50 0.00 4.79
3000 4518 9.188588 TCAAAAACGCTCTTATATTATAGGACG 57.811 33.333 12.07 12.07 0.00 4.79
3007 4525 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
3011 4529 9.517609 CTATACTAGTGTCAAAAACGCTCTTAT 57.482 33.333 5.39 0.00 45.69 1.73
3012 4530 8.517878 ACTATACTAGTGTCAAAAACGCTCTTA 58.482 33.333 5.39 0.00 45.69 2.10
3015 4533 6.979509 CACTATACTAGTGTCAAAAACGCTC 58.020 40.000 5.39 0.00 45.69 5.03
3042 4560 9.590451 TCCGTCTCATAATATAAGAACGTTTTT 57.410 29.630 9.22 9.22 0.00 1.94
3043 4561 9.245962 CTCCGTCTCATAATATAAGAACGTTTT 57.754 33.333 0.46 0.00 0.00 2.43
3044 4562 7.866393 CCTCCGTCTCATAATATAAGAACGTTT 59.134 37.037 0.46 0.00 0.00 3.60
3045 4563 7.368833 CCTCCGTCTCATAATATAAGAACGTT 58.631 38.462 0.00 0.00 0.00 3.99
3046 4564 6.072064 CCCTCCGTCTCATAATATAAGAACGT 60.072 42.308 0.00 0.00 0.00 3.99
3047 4565 6.150641 TCCCTCCGTCTCATAATATAAGAACG 59.849 42.308 0.00 0.00 0.00 3.95
3048 4566 7.177041 ACTCCCTCCGTCTCATAATATAAGAAC 59.823 40.741 0.00 0.00 0.00 3.01
3049 4567 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
3050 4568 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
3051 4569 8.754991 ATACTCCCTCCGTCTCATAATATAAG 57.245 38.462 0.00 0.00 0.00 1.73
3052 4570 9.543231 AAATACTCCCTCCGTCTCATAATATAA 57.457 33.333 0.00 0.00 0.00 0.98
3053 4571 8.967918 CAAATACTCCCTCCGTCTCATAATATA 58.032 37.037 0.00 0.00 0.00 0.86
3054 4572 7.455008 ACAAATACTCCCTCCGTCTCATAATAT 59.545 37.037 0.00 0.00 0.00 1.28
3055 4573 6.781014 ACAAATACTCCCTCCGTCTCATAATA 59.219 38.462 0.00 0.00 0.00 0.98
3056 4574 5.602978 ACAAATACTCCCTCCGTCTCATAAT 59.397 40.000 0.00 0.00 0.00 1.28
3057 4575 4.960469 ACAAATACTCCCTCCGTCTCATAA 59.040 41.667 0.00 0.00 0.00 1.90
3058 4576 4.543689 ACAAATACTCCCTCCGTCTCATA 58.456 43.478 0.00 0.00 0.00 2.15
3059 4577 3.375699 ACAAATACTCCCTCCGTCTCAT 58.624 45.455 0.00 0.00 0.00 2.90
3060 4578 2.816411 ACAAATACTCCCTCCGTCTCA 58.184 47.619 0.00 0.00 0.00 3.27
3061 4579 3.889520 AACAAATACTCCCTCCGTCTC 57.110 47.619 0.00 0.00 0.00 3.36
3062 4580 3.326880 ACAAACAAATACTCCCTCCGTCT 59.673 43.478 0.00 0.00 0.00 4.18
3063 4581 3.671716 ACAAACAAATACTCCCTCCGTC 58.328 45.455 0.00 0.00 0.00 4.79
3064 4582 3.782656 ACAAACAAATACTCCCTCCGT 57.217 42.857 0.00 0.00 0.00 4.69
3065 4583 5.240844 AGAAAACAAACAAATACTCCCTCCG 59.759 40.000 0.00 0.00 0.00 4.63
3066 4584 6.447162 CAGAAAACAAACAAATACTCCCTCC 58.553 40.000 0.00 0.00 0.00 4.30
3067 4585 6.447162 CCAGAAAACAAACAAATACTCCCTC 58.553 40.000 0.00 0.00 0.00 4.30
3068 4586 5.304357 CCCAGAAAACAAACAAATACTCCCT 59.696 40.000 0.00 0.00 0.00 4.20
3069 4587 5.069914 ACCCAGAAAACAAACAAATACTCCC 59.930 40.000 0.00 0.00 0.00 4.30
3070 4588 6.156748 ACCCAGAAAACAAACAAATACTCC 57.843 37.500 0.00 0.00 0.00 3.85
3071 4589 8.387354 CAAAACCCAGAAAACAAACAAATACTC 58.613 33.333 0.00 0.00 0.00 2.59
3072 4590 7.880713 ACAAAACCCAGAAAACAAACAAATACT 59.119 29.630 0.00 0.00 0.00 2.12
3101 4625 5.809001 TGAGCTTCACCTCTGATAACAATT 58.191 37.500 0.00 0.00 33.02 2.32
3119 4643 6.189859 TGGATGAAACCAATCTATTTGAGCT 58.810 36.000 0.00 0.00 37.53 4.09
3164 4702 7.750947 ACTCCCTCCACTAGTATAAAACAAT 57.249 36.000 0.00 0.00 0.00 2.71
3167 4705 7.894753 ACTACTCCCTCCACTAGTATAAAAC 57.105 40.000 0.00 0.00 0.00 2.43
3171 4709 7.570232 TGAACTACTACTCCCTCCACTAGTATA 59.430 40.741 0.00 0.00 0.00 1.47
3172 4710 6.389278 TGAACTACTACTCCCTCCACTAGTAT 59.611 42.308 0.00 0.00 0.00 2.12
3253 4800 1.466856 TGCTAGCTTGAATTGCAGGG 58.533 50.000 17.23 0.00 0.00 4.45
3269 4816 3.795688 TCTTTTTGACTGGAGGATGCT 57.204 42.857 0.00 0.00 0.00 3.79
3270 4817 5.415701 TGTTATCTTTTTGACTGGAGGATGC 59.584 40.000 0.00 0.00 0.00 3.91
3271 4818 7.452880 TTGTTATCTTTTTGACTGGAGGATG 57.547 36.000 0.00 0.00 0.00 3.51
3272 4819 7.123247 CCATTGTTATCTTTTTGACTGGAGGAT 59.877 37.037 0.00 0.00 0.00 3.24
3273 4820 6.434028 CCATTGTTATCTTTTTGACTGGAGGA 59.566 38.462 0.00 0.00 0.00 3.71
3274 4821 6.434028 TCCATTGTTATCTTTTTGACTGGAGG 59.566 38.462 0.00 0.00 0.00 4.30
3275 4822 7.040478 TGTCCATTGTTATCTTTTTGACTGGAG 60.040 37.037 0.00 0.00 30.21 3.86
3276 4823 6.775142 TGTCCATTGTTATCTTTTTGACTGGA 59.225 34.615 0.00 0.00 0.00 3.86
3277 4824 6.980593 TGTCCATTGTTATCTTTTTGACTGG 58.019 36.000 0.00 0.00 0.00 4.00
3278 4825 9.480053 AATTGTCCATTGTTATCTTTTTGACTG 57.520 29.630 0.00 0.00 0.00 3.51
3288 4837 9.754382 ATTCATGCTAAATTGTCCATTGTTATC 57.246 29.630 0.00 0.00 0.00 1.75
3298 4847 7.008992 GCTTGACTTGATTCATGCTAAATTGTC 59.991 37.037 4.27 0.00 41.32 3.18
3317 4866 8.768955 GTCGATTGATGAATATTTAGCTTGACT 58.231 33.333 0.00 0.00 0.00 3.41
3398 6386 4.398044 ACACTGAAACTGGAAACGATTGTT 59.602 37.500 0.00 0.00 40.98 2.83
3403 6391 3.194861 CTGACACTGAAACTGGAAACGA 58.805 45.455 0.00 0.00 0.00 3.85
3404 6392 2.287915 CCTGACACTGAAACTGGAAACG 59.712 50.000 0.00 0.00 0.00 3.60
3422 6410 5.105635 ACAAAATGATATGAACTGGTGCCTG 60.106 40.000 0.00 0.00 0.00 4.85
3425 6413 9.616634 CATATACAAAATGATATGAACTGGTGC 57.383 33.333 0.00 0.00 37.98 5.01
3443 6439 8.908903 ACACAAAGTTTTTCCAGTCATATACAA 58.091 29.630 0.00 0.00 0.00 2.41
3444 6440 8.349245 CACACAAAGTTTTTCCAGTCATATACA 58.651 33.333 0.00 0.00 0.00 2.29
3461 6458 1.899142 ACTTTTGCACCCACACAAAGT 59.101 42.857 4.91 4.91 37.11 2.66
3462 6459 2.094286 TGACTTTTGCACCCACACAAAG 60.094 45.455 3.77 3.77 37.11 2.77
3463 6460 1.895798 TGACTTTTGCACCCACACAAA 59.104 42.857 0.00 0.00 34.11 2.83
3464 6461 1.550327 TGACTTTTGCACCCACACAA 58.450 45.000 0.00 0.00 0.00 3.33
3465 6462 1.550327 TTGACTTTTGCACCCACACA 58.450 45.000 0.00 0.00 0.00 3.72
3466 6463 2.267426 GTTTGACTTTTGCACCCACAC 58.733 47.619 0.00 0.00 0.00 3.82
3467 6464 1.895798 TGTTTGACTTTTGCACCCACA 59.104 42.857 0.00 0.00 0.00 4.17
3468 6465 2.663826 TGTTTGACTTTTGCACCCAC 57.336 45.000 0.00 0.00 0.00 4.61
3469 6466 2.762887 TGATGTTTGACTTTTGCACCCA 59.237 40.909 0.00 0.00 0.00 4.51
3472 6469 4.101942 TCGTTGATGTTTGACTTTTGCAC 58.898 39.130 0.00 0.00 0.00 4.57
3473 6470 4.362932 TCGTTGATGTTTGACTTTTGCA 57.637 36.364 0.00 0.00 0.00 4.08
3474 6471 5.332506 CCATTCGTTGATGTTTGACTTTTGC 60.333 40.000 0.00 0.00 0.00 3.68
3475 6472 5.748152 ACCATTCGTTGATGTTTGACTTTTG 59.252 36.000 0.00 0.00 0.00 2.44
3476 6473 5.748152 CACCATTCGTTGATGTTTGACTTTT 59.252 36.000 0.00 0.00 0.00 2.27
3477 6474 5.280945 CACCATTCGTTGATGTTTGACTTT 58.719 37.500 0.00 0.00 0.00 2.66
3478 6475 4.261572 CCACCATTCGTTGATGTTTGACTT 60.262 41.667 0.00 0.00 0.00 3.01
3479 6476 3.253188 CCACCATTCGTTGATGTTTGACT 59.747 43.478 0.00 0.00 0.00 3.41
3480 6477 3.252215 TCCACCATTCGTTGATGTTTGAC 59.748 43.478 0.00 0.00 0.00 3.18
3481 6478 3.481453 TCCACCATTCGTTGATGTTTGA 58.519 40.909 0.00 0.00 0.00 2.69
3482 6479 3.913548 TCCACCATTCGTTGATGTTTG 57.086 42.857 0.00 0.00 0.00 2.93
3483 6480 4.927978 TTTCCACCATTCGTTGATGTTT 57.072 36.364 0.00 0.00 0.00 2.83
3491 6495 2.514803 CCTCCTTTTTCCACCATTCGT 58.485 47.619 0.00 0.00 0.00 3.85
3507 6511 6.043243 TCTCCATGTATGAATTTCTACCCTCC 59.957 42.308 0.00 0.00 0.00 4.30
3511 6515 9.832445 TTTAGTCTCCATGTATGAATTTCTACC 57.168 33.333 0.00 0.00 0.00 3.18
3530 6534 5.105756 GCAGGTTGCCACAAATATTTAGTCT 60.106 40.000 0.00 0.00 37.42 3.24
3532 6536 4.526262 TGCAGGTTGCCACAAATATTTAGT 59.474 37.500 0.00 0.00 44.23 2.24
3536 6540 2.632028 TGTGCAGGTTGCCACAAATATT 59.368 40.909 0.00 0.00 44.23 1.28
3581 6585 9.554395 TTGTATCAATCAAAAGTCTTCAGTGTA 57.446 29.630 0.00 0.00 0.00 2.90
3590 6594 8.147642 AGATCCGATTGTATCAATCAAAAGTC 57.852 34.615 18.31 10.49 0.00 3.01
3595 6599 5.821995 TGCAAGATCCGATTGTATCAATCAA 59.178 36.000 18.31 9.11 0.00 2.57
3608 6612 0.107703 AAGGCGATTGCAAGATCCGA 60.108 50.000 4.94 0.00 45.35 4.55
3682 6686 6.825944 TGTATGGTATGAGAGCTAGTCATC 57.174 41.667 13.14 6.81 36.11 2.92
3699 6703 4.219070 CCTGGATGCATGGTAAATGTATGG 59.781 45.833 2.46 0.00 0.00 2.74
3709 6713 1.288633 TGGAAATCCTGGATGCATGGT 59.711 47.619 10.54 0.00 36.82 3.55
3735 6756 4.165372 AGTTCTTACTGGTGGAGGAAACAA 59.835 41.667 0.00 0.00 31.99 2.83
3736 6757 3.714798 AGTTCTTACTGGTGGAGGAAACA 59.285 43.478 0.00 0.00 31.99 2.83
3756 6786 6.884836 TGTGATGTCAGTGTAGTCTATGTAGT 59.115 38.462 0.00 0.00 0.00 2.73
3773 6807 4.385825 TGGACTACCAGTTTTGTGATGTC 58.614 43.478 0.00 0.00 41.77 3.06
3813 6851 5.998454 AGTGAGATGTTGAGTTTGAGTTG 57.002 39.130 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.