Multiple sequence alignment - TraesCS5D01G041500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G041500 chr5D 100.000 4444 0 0 1 4444 42008530 42012973 0.000000e+00 8207.0
1 TraesCS5D01G041500 chr5D 89.802 2020 99 44 1980 3933 42057240 42055262 0.000000e+00 2490.0
2 TraesCS5D01G041500 chr5D 85.085 999 70 33 696 1683 42058386 42057456 0.000000e+00 946.0
3 TraesCS5D01G041500 chr5D 85.407 418 58 3 2614 3031 136946115 136946529 8.830000e-117 431.0
4 TraesCS5D01G041500 chr5D 89.669 242 7 6 468 702 42058948 42058718 4.350000e-75 292.0
5 TraesCS5D01G041500 chr5D 90.955 199 13 2 3249 3446 136946579 136946773 3.410000e-66 263.0
6 TraesCS5D01G041500 chr5D 95.425 153 5 2 20 170 370829975 370830127 4.440000e-60 243.0
7 TraesCS5D01G041500 chr5D 83.270 263 32 7 1314 1575 136944684 136944935 9.610000e-57 231.0
8 TraesCS5D01G041500 chr5D 85.517 145 21 0 3979 4123 257679136 257678992 7.700000e-33 152.0
9 TraesCS5D01G041500 chr5D 91.262 103 8 1 304 405 42059050 42058948 5.990000e-29 139.0
10 TraesCS5D01G041500 chr5D 80.233 172 15 8 1793 1951 42057397 42057232 1.310000e-20 111.0
11 TraesCS5D01G041500 chr5B 95.806 1955 52 13 2234 4161 36695125 36697076 0.000000e+00 3129.0
12 TraesCS5D01G041500 chr5B 96.730 734 17 4 2413 3140 36775524 36774792 0.000000e+00 1216.0
13 TraesCS5D01G041500 chr5B 97.640 678 9 2 3142 3812 36816003 36815326 0.000000e+00 1157.0
14 TraesCS5D01G041500 chr5B 84.601 1104 108 30 2033 3109 185534557 185535625 0.000000e+00 1040.0
15 TraesCS5D01G041500 chr5B 88.184 804 52 19 713 1496 36693776 36694556 0.000000e+00 918.0
16 TraesCS5D01G041500 chr5B 82.798 1058 113 38 843 1886 185523859 185524861 0.000000e+00 881.0
17 TraesCS5D01G041500 chr5B 94.588 425 23 0 4020 4444 36774188 36773764 0.000000e+00 658.0
18 TraesCS5D01G041500 chr5B 88.865 467 31 11 713 1177 36660252 36660699 5.020000e-154 555.0
19 TraesCS5D01G041500 chr5B 92.201 359 20 3 893 1243 36776642 36776284 6.640000e-138 501.0
20 TraesCS5D01G041500 chr5B 92.201 359 20 3 893 1243 36817672 36817314 6.640000e-138 501.0
21 TraesCS5D01G041500 chr5B 87.918 389 47 0 2643 3031 185510835 185511223 4.050000e-125 459.0
22 TraesCS5D01G041500 chr5B 90.268 298 20 4 1276 1569 36776281 36775989 9.020000e-102 381.0
23 TraesCS5D01G041500 chr5B 90.268 298 20 4 1276 1569 36817311 36817019 9.020000e-102 381.0
24 TraesCS5D01G041500 chr5B 96.759 216 6 1 1948 2163 36775988 36775774 4.230000e-95 359.0
25 TraesCS5D01G041500 chr5B 96.759 216 6 1 1948 2163 36817018 36816804 4.230000e-95 359.0
26 TraesCS5D01G041500 chr5B 79.083 545 74 28 3247 3772 185535753 185536276 5.510000e-89 339.0
27 TraesCS5D01G041500 chr5B 93.363 226 6 2 1980 2196 36694903 36695128 4.290000e-85 326.0
28 TraesCS5D01G041500 chr5B 77.120 625 86 27 1944 2526 185508767 185509376 4.320000e-80 309.0
29 TraesCS5D01G041500 chr5B 90.547 201 14 2 3247 3446 185511271 185511467 1.230000e-65 261.0
30 TraesCS5D01G041500 chr5B 90.854 164 8 4 307 469 36777003 36776846 3.480000e-51 213.0
31 TraesCS5D01G041500 chr5B 90.854 164 8 4 307 469 36818033 36817876 3.480000e-51 213.0
32 TraesCS5D01G041500 chr5B 89.937 159 10 3 320 477 36659494 36659647 2.710000e-47 200.0
33 TraesCS5D01G041500 chr5B 89.937 159 10 3 320 477 36693018 36693171 2.710000e-47 200.0
34 TraesCS5D01G041500 chr5B 90.345 145 4 6 559 695 36659684 36659826 9.820000e-42 182.0
35 TraesCS5D01G041500 chr5B 90.345 145 4 6 559 695 36693208 36693350 9.820000e-42 182.0
36 TraesCS5D01G041500 chr5B 89.167 120 10 2 1929 2046 185524862 185524980 3.580000e-31 147.0
37 TraesCS5D01G041500 chrUn 96.415 1311 38 4 3142 4444 340277393 340278702 0.000000e+00 2152.0
38 TraesCS5D01G041500 chrUn 96.415 1311 37 5 3142 4444 340335921 340337229 0.000000e+00 2152.0
39 TraesCS5D01G041500 chrUn 96.730 734 17 4 2413 3140 65844090 65844822 0.000000e+00 1216.0
40 TraesCS5D01G041500 chrUn 88.792 571 37 13 713 1275 337271813 337272364 0.000000e+00 675.0
41 TraesCS5D01G041500 chrUn 92.201 359 20 3 893 1243 65843080 65843438 6.640000e-138 501.0
42 TraesCS5D01G041500 chrUn 90.268 298 20 4 1276 1569 65843441 65843733 9.020000e-102 381.0
43 TraesCS5D01G041500 chrUn 96.759 216 6 1 1948 2163 65843734 65843948 4.230000e-95 359.0
44 TraesCS5D01G041500 chrUn 90.854 164 8 4 307 469 65842719 65842876 3.480000e-51 213.0
45 TraesCS5D01G041500 chrUn 89.937 159 10 3 320 477 337271055 337271208 2.710000e-47 200.0
46 TraesCS5D01G041500 chrUn 90.345 145 4 6 559 695 337271245 337271387 9.820000e-42 182.0
47 TraesCS5D01G041500 chrUn 95.833 72 3 0 4373 4444 65847860 65847931 2.810000e-22 117.0
48 TraesCS5D01G041500 chr5A 88.763 1682 96 52 2413 4051 30400718 30402349 0.000000e+00 1973.0
49 TraesCS5D01G041500 chr5A 90.729 809 57 9 696 1496 30399429 30400227 0.000000e+00 1062.0
50 TraesCS5D01G041500 chr5A 83.627 965 102 29 922 1886 168131509 168130601 0.000000e+00 856.0
51 TraesCS5D01G041500 chr5A 87.156 654 49 9 1929 2559 168130600 168129959 0.000000e+00 710.0
52 TraesCS5D01G041500 chr5A 87.097 403 49 3 2629 3031 168236771 168236372 1.880000e-123 453.0
53 TraesCS5D01G041500 chr5A 85.861 389 22 14 1974 2349 30400355 30400723 2.510000e-102 383.0
54 TraesCS5D01G041500 chr5A 82.469 405 41 10 4053 4444 30402477 30402864 1.190000e-85 327.0
55 TraesCS5D01G041500 chr5A 82.873 181 23 6 2349 2527 168237090 168236916 5.950000e-34 156.0
56 TraesCS5D01G041500 chr5A 82.418 182 27 4 4243 4419 588727023 588726842 2.140000e-33 154.0
57 TraesCS5D01G041500 chr5A 86.667 135 18 0 3979 4113 342322021 342321887 2.770000e-32 150.0
58 TraesCS5D01G041500 chr5A 86.364 132 4 6 569 692 30398859 30398984 1.000000e-26 132.0
59 TraesCS5D01G041500 chr5A 88.608 79 5 3 3811 3888 168128428 168128353 4.730000e-15 93.5
60 TraesCS5D01G041500 chr5A 100.000 35 0 0 3940 3974 405058917 405058951 1.030000e-06 65.8
61 TraesCS5D01G041500 chr7D 98.026 152 3 0 19 170 580663548 580663699 9.480000e-67 265.0
62 TraesCS5D01G041500 chr7D 77.703 296 44 18 4156 4441 406811489 406811772 1.280000e-35 161.0
63 TraesCS5D01G041500 chr3D 96.053 152 5 1 19 170 135081158 135081008 3.430000e-61 246.0
64 TraesCS5D01G041500 chr3D 94.737 152 6 2 19 170 298645311 298645460 7.430000e-58 235.0
65 TraesCS5D01G041500 chr7B 95.425 153 7 0 18 170 163472921 163473073 1.230000e-60 244.0
66 TraesCS5D01G041500 chr2D 94.904 157 6 2 17 171 634918299 634918143 1.230000e-60 244.0
67 TraesCS5D01G041500 chr1A 96.053 152 3 2 20 171 236652615 236652763 1.230000e-60 244.0
68 TraesCS5D01G041500 chr1A 100.000 35 0 0 3940 3974 248044959 248044925 1.030000e-06 65.8
69 TraesCS5D01G041500 chr1D 94.872 156 5 2 17 172 344942654 344942806 1.600000e-59 241.0
70 TraesCS5D01G041500 chr6D 94.839 155 5 3 18 170 429154160 429154313 5.740000e-59 239.0
71 TraesCS5D01G041500 chr6D 84.000 150 22 2 3975 4123 265280512 265280364 4.630000e-30 143.0
72 TraesCS5D01G041500 chr6D 96.970 33 1 0 2385 2417 436476569 436476537 6.210000e-04 56.5
73 TraesCS5D01G041500 chr4A 82.569 218 31 6 4233 4444 740488231 740488015 7.590000e-43 185.0
74 TraesCS5D01G041500 chr6A 82.105 190 26 6 4259 4441 69622842 69623030 5.950000e-34 156.0
75 TraesCS5D01G041500 chr6A 100.000 35 0 0 3940 3974 278821020 278821054 1.030000e-06 65.8
76 TraesCS5D01G041500 chr6A 100.000 35 0 0 3940 3974 284783510 284783476 1.030000e-06 65.8
77 TraesCS5D01G041500 chr6A 100.000 35 0 0 3940 3974 312970887 312970853 1.030000e-06 65.8
78 TraesCS5D01G041500 chr3B 84.564 149 23 0 3975 4123 104801063 104800915 9.960000e-32 148.0
79 TraesCS5D01G041500 chr1B 84.828 145 22 0 3979 4123 285188064 285188208 3.580000e-31 147.0
80 TraesCS5D01G041500 chr3A 100.000 35 0 0 3940 3974 266393889 266393855 1.030000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G041500 chr5D 42008530 42012973 4443 False 8207.000000 8207 100.000000 1 4444 1 chr5D.!!$F1 4443
1 TraesCS5D01G041500 chr5D 42055262 42059050 3788 True 795.600000 2490 87.210200 304 3933 5 chr5D.!!$R2 3629
2 TraesCS5D01G041500 chr5D 136944684 136946773 2089 False 308.333333 431 86.544000 1314 3446 3 chr5D.!!$F3 2132
3 TraesCS5D01G041500 chr5B 36693018 36697076 4058 False 951.000000 3129 91.527000 320 4161 5 chr5B.!!$F2 3841
4 TraesCS5D01G041500 chr5B 185534557 185536276 1719 False 689.500000 1040 81.842000 2033 3772 2 chr5B.!!$F5 1739
5 TraesCS5D01G041500 chr5B 36773764 36777003 3239 True 554.666667 1216 93.566667 307 4444 6 chr5B.!!$R1 4137
6 TraesCS5D01G041500 chr5B 36815326 36818033 2707 True 522.200000 1157 93.544400 307 3812 5 chr5B.!!$R2 3505
7 TraesCS5D01G041500 chr5B 185523859 185524980 1121 False 514.000000 881 85.982500 843 2046 2 chr5B.!!$F4 1203
8 TraesCS5D01G041500 chr5B 185508767 185511467 2700 False 343.000000 459 85.195000 1944 3446 3 chr5B.!!$F3 1502
9 TraesCS5D01G041500 chr5B 36659494 36660699 1205 False 312.333333 555 89.715667 320 1177 3 chr5B.!!$F1 857
10 TraesCS5D01G041500 chrUn 340277393 340278702 1309 False 2152.000000 2152 96.415000 3142 4444 1 chrUn.!!$F1 1302
11 TraesCS5D01G041500 chrUn 340335921 340337229 1308 False 2152.000000 2152 96.415000 3142 4444 1 chrUn.!!$F2 1302
12 TraesCS5D01G041500 chrUn 65842719 65847931 5212 False 464.500000 1216 93.774167 307 4444 6 chrUn.!!$F3 4137
13 TraesCS5D01G041500 chrUn 337271055 337272364 1309 False 352.333333 675 89.691333 320 1275 3 chrUn.!!$F4 955
14 TraesCS5D01G041500 chr5A 30398859 30402864 4005 False 775.400000 1973 86.837200 569 4444 5 chr5A.!!$F2 3875
15 TraesCS5D01G041500 chr5A 168128353 168131509 3156 True 553.166667 856 86.463667 922 3888 3 chr5A.!!$R3 2966
16 TraesCS5D01G041500 chr5A 168236372 168237090 718 True 304.500000 453 84.985000 2349 3031 2 chr5A.!!$R4 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.036875 CCACCCAGGTTCAAGTCCTC 59.963 60.0 0.00 0.0 32.37 3.71 F
552 557 0.179084 CGCCACCGGTCTCAACATAT 60.179 55.0 2.59 0.0 0.00 1.78 F
1921 2680 0.977395 CTGGGGTCCTCGAAGAACTT 59.023 55.0 0.00 0.0 34.09 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1223 1786 0.898320 GCTAACCTGACTGAGCTGGA 59.102 55.000 0.00 0.00 32.04 3.86 R
2180 2966 0.172578 TATGTGACTCGGCGTGAAGG 59.827 55.000 16.57 0.87 0.00 3.46 R
3861 6448 3.874383 TGAGGTTGGACTCATTGGAAA 57.126 42.857 0.00 0.00 42.26 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.915654 GCATTAAATTCTTGTGTAAAGGAAGTG 58.084 33.333 0.00 0.00 0.00 3.16
29 30 5.948992 ATTCTTGTGTAAAGGAAGTGAGC 57.051 39.130 0.00 0.00 0.00 4.26
30 31 3.740115 TCTTGTGTAAAGGAAGTGAGCC 58.260 45.455 0.00 0.00 0.00 4.70
31 32 3.391296 TCTTGTGTAAAGGAAGTGAGCCT 59.609 43.478 0.00 0.00 37.35 4.58
32 33 4.591498 TCTTGTGTAAAGGAAGTGAGCCTA 59.409 41.667 0.00 0.00 33.76 3.93
33 34 4.537135 TGTGTAAAGGAAGTGAGCCTAG 57.463 45.455 0.00 0.00 33.76 3.02
34 35 3.263261 GTGTAAAGGAAGTGAGCCTAGC 58.737 50.000 0.00 0.00 33.76 3.42
35 36 3.055747 GTGTAAAGGAAGTGAGCCTAGCT 60.056 47.826 0.00 0.00 43.88 3.32
55 56 3.475932 ACTTGGCTAGTGGAGTGGA 57.524 52.632 0.00 0.00 35.19 4.02
56 57 1.958288 ACTTGGCTAGTGGAGTGGAT 58.042 50.000 0.00 0.00 35.19 3.41
57 58 1.556911 ACTTGGCTAGTGGAGTGGATG 59.443 52.381 0.00 0.00 35.19 3.51
58 59 1.556911 CTTGGCTAGTGGAGTGGATGT 59.443 52.381 0.00 0.00 0.00 3.06
59 60 2.543037 TGGCTAGTGGAGTGGATGTA 57.457 50.000 0.00 0.00 0.00 2.29
60 61 2.108168 TGGCTAGTGGAGTGGATGTAC 58.892 52.381 0.00 0.00 0.00 2.90
61 62 2.108168 GGCTAGTGGAGTGGATGTACA 58.892 52.381 0.00 0.00 0.00 2.90
62 63 2.500098 GGCTAGTGGAGTGGATGTACAA 59.500 50.000 0.00 0.00 0.00 2.41
63 64 3.522553 GCTAGTGGAGTGGATGTACAAC 58.477 50.000 0.00 0.00 0.00 3.32
64 65 3.679083 GCTAGTGGAGTGGATGTACAACC 60.679 52.174 14.97 14.97 0.00 3.77
65 66 1.628846 AGTGGAGTGGATGTACAACCC 59.371 52.381 18.60 13.99 0.00 4.11
66 67 1.349688 GTGGAGTGGATGTACAACCCA 59.650 52.381 18.60 16.27 0.00 4.51
67 68 1.628340 TGGAGTGGATGTACAACCCAG 59.372 52.381 18.60 0.00 0.00 4.45
68 69 1.679032 GGAGTGGATGTACAACCCAGC 60.679 57.143 18.60 13.38 0.00 4.85
69 70 0.328258 AGTGGATGTACAACCCAGCC 59.672 55.000 18.60 9.24 38.85 4.85
70 71 0.037590 GTGGATGTACAACCCAGCCA 59.962 55.000 18.60 1.29 45.53 4.75
71 72 0.037590 TGGATGTACAACCCAGCCAC 59.962 55.000 18.60 0.00 43.06 5.01
72 73 0.679960 GGATGTACAACCCAGCCACC 60.680 60.000 11.01 0.00 38.27 4.61
73 74 0.679960 GATGTACAACCCAGCCACCC 60.680 60.000 0.00 0.00 0.00 4.61
74 75 1.431195 ATGTACAACCCAGCCACCCA 61.431 55.000 0.00 0.00 0.00 4.51
75 76 1.303317 GTACAACCCAGCCACCCAG 60.303 63.158 0.00 0.00 0.00 4.45
76 77 2.534396 TACAACCCAGCCACCCAGG 61.534 63.158 0.00 0.00 41.84 4.45
77 78 3.902112 CAACCCAGCCACCCAGGT 61.902 66.667 0.00 0.00 40.61 4.00
78 79 3.110031 AACCCAGCCACCCAGGTT 61.110 61.111 0.00 0.00 40.61 3.50
79 80 3.146828 AACCCAGCCACCCAGGTTC 62.147 63.158 0.00 0.00 38.17 3.62
80 81 3.579302 CCCAGCCACCCAGGTTCA 61.579 66.667 0.00 0.00 40.61 3.18
81 82 2.520458 CCAGCCACCCAGGTTCAA 59.480 61.111 0.00 0.00 40.61 2.69
82 83 1.604593 CCAGCCACCCAGGTTCAAG 60.605 63.158 0.00 0.00 40.61 3.02
83 84 1.151450 CAGCCACCCAGGTTCAAGT 59.849 57.895 0.00 0.00 40.61 3.16
84 85 0.890996 CAGCCACCCAGGTTCAAGTC 60.891 60.000 0.00 0.00 40.61 3.01
85 86 1.603739 GCCACCCAGGTTCAAGTCC 60.604 63.158 0.00 0.00 40.61 3.85
86 87 2.069165 GCCACCCAGGTTCAAGTCCT 62.069 60.000 0.00 0.00 40.61 3.85
87 88 0.036875 CCACCCAGGTTCAAGTCCTC 59.963 60.000 0.00 0.00 32.37 3.71
88 89 0.764890 CACCCAGGTTCAAGTCCTCA 59.235 55.000 0.00 0.00 32.37 3.86
89 90 0.765510 ACCCAGGTTCAAGTCCTCAC 59.234 55.000 0.00 0.00 32.37 3.51
90 91 0.764890 CCCAGGTTCAAGTCCTCACA 59.235 55.000 0.00 0.00 32.37 3.58
91 92 1.271054 CCCAGGTTCAAGTCCTCACAG 60.271 57.143 0.00 0.00 32.37 3.66
92 93 1.271054 CCAGGTTCAAGTCCTCACAGG 60.271 57.143 0.00 0.00 36.46 4.00
93 94 0.398318 AGGTTCAAGTCCTCACAGGC 59.602 55.000 0.00 0.00 34.61 4.85
94 95 0.951040 GGTTCAAGTCCTCACAGGCG 60.951 60.000 0.00 0.00 34.61 5.52
95 96 1.301716 TTCAAGTCCTCACAGGCGC 60.302 57.895 0.00 0.00 34.61 6.53
96 97 3.114616 CAAGTCCTCACAGGCGCG 61.115 66.667 0.00 0.00 34.61 6.86
97 98 3.303135 AAGTCCTCACAGGCGCGA 61.303 61.111 12.10 0.00 34.61 5.87
98 99 2.867855 AAGTCCTCACAGGCGCGAA 61.868 57.895 12.10 0.00 34.61 4.70
99 100 2.125512 GTCCTCACAGGCGCGAAT 60.126 61.111 12.10 0.00 34.61 3.34
100 101 1.741770 GTCCTCACAGGCGCGAATT 60.742 57.895 12.10 0.00 34.61 2.17
101 102 1.003839 TCCTCACAGGCGCGAATTT 60.004 52.632 12.10 0.00 34.61 1.82
102 103 1.135315 CCTCACAGGCGCGAATTTG 59.865 57.895 12.10 3.96 0.00 2.32
103 104 1.135315 CTCACAGGCGCGAATTTGG 59.865 57.895 12.10 0.00 0.00 3.28
104 105 2.179018 CACAGGCGCGAATTTGGG 59.821 61.111 12.10 5.38 0.00 4.12
105 106 2.282180 ACAGGCGCGAATTTGGGT 60.282 55.556 12.10 0.00 0.00 4.51
106 107 1.901464 ACAGGCGCGAATTTGGGTT 60.901 52.632 12.10 0.00 0.00 4.11
107 108 1.154035 CAGGCGCGAATTTGGGTTC 60.154 57.895 12.10 4.78 0.00 3.62
108 109 1.303317 AGGCGCGAATTTGGGTTCT 60.303 52.632 12.10 6.74 0.00 3.01
109 110 0.893727 AGGCGCGAATTTGGGTTCTT 60.894 50.000 12.10 0.00 0.00 2.52
110 111 0.806241 GGCGCGAATTTGGGTTCTTA 59.194 50.000 12.10 0.00 0.00 2.10
111 112 1.404035 GGCGCGAATTTGGGTTCTTAT 59.596 47.619 12.10 0.00 0.00 1.73
112 113 2.159296 GGCGCGAATTTGGGTTCTTATT 60.159 45.455 12.10 0.00 0.00 1.40
113 114 3.065648 GGCGCGAATTTGGGTTCTTATTA 59.934 43.478 12.10 0.00 0.00 0.98
114 115 4.261447 GGCGCGAATTTGGGTTCTTATTAT 60.261 41.667 12.10 0.00 0.00 1.28
115 116 5.278604 GCGCGAATTTGGGTTCTTATTATT 58.721 37.500 12.10 0.00 0.00 1.40
116 117 5.746721 GCGCGAATTTGGGTTCTTATTATTT 59.253 36.000 12.10 0.00 0.00 1.40
117 118 6.913673 GCGCGAATTTGGGTTCTTATTATTTA 59.086 34.615 12.10 0.00 0.00 1.40
118 119 7.432838 GCGCGAATTTGGGTTCTTATTATTTAA 59.567 33.333 12.10 0.00 0.00 1.52
119 120 9.291664 CGCGAATTTGGGTTCTTATTATTTAAA 57.708 29.630 0.00 0.00 0.00 1.52
135 136 8.742554 ATTATTTAAAAGAAAACTCGCTGTGG 57.257 30.769 0.00 0.00 0.00 4.17
136 137 4.561735 TTAAAAGAAAACTCGCTGTGGG 57.438 40.909 0.00 0.00 0.00 4.61
137 138 1.318576 AAAGAAAACTCGCTGTGGGG 58.681 50.000 0.00 0.00 0.00 4.96
138 139 0.537371 AAGAAAACTCGCTGTGGGGG 60.537 55.000 0.00 0.00 0.00 5.40
156 157 3.672066 GGCTTCCCCTACTGCTTTT 57.328 52.632 0.00 0.00 0.00 2.27
157 158 1.464734 GGCTTCCCCTACTGCTTTTC 58.535 55.000 0.00 0.00 0.00 2.29
158 159 1.004862 GGCTTCCCCTACTGCTTTTCT 59.995 52.381 0.00 0.00 0.00 2.52
159 160 2.555448 GGCTTCCCCTACTGCTTTTCTT 60.555 50.000 0.00 0.00 0.00 2.52
160 161 3.157881 GCTTCCCCTACTGCTTTTCTTT 58.842 45.455 0.00 0.00 0.00 2.52
161 162 3.191581 GCTTCCCCTACTGCTTTTCTTTC 59.808 47.826 0.00 0.00 0.00 2.62
162 163 3.053831 TCCCCTACTGCTTTTCTTTCG 57.946 47.619 0.00 0.00 0.00 3.46
163 164 2.635915 TCCCCTACTGCTTTTCTTTCGA 59.364 45.455 0.00 0.00 0.00 3.71
164 165 3.071892 TCCCCTACTGCTTTTCTTTCGAA 59.928 43.478 0.00 0.00 0.00 3.71
165 166 3.818773 CCCCTACTGCTTTTCTTTCGAAA 59.181 43.478 10.71 10.71 37.36 3.46
166 167 4.277423 CCCCTACTGCTTTTCTTTCGAAAA 59.723 41.667 12.41 0.54 44.50 2.29
167 168 5.221165 CCCCTACTGCTTTTCTTTCGAAAAA 60.221 40.000 12.41 6.71 45.57 1.94
187 188 3.619233 AAATGGTTGTCTTGTGTACGC 57.381 42.857 0.00 0.00 0.00 4.42
188 189 2.543777 ATGGTTGTCTTGTGTACGCT 57.456 45.000 8.10 0.00 0.00 5.07
189 190 1.860676 TGGTTGTCTTGTGTACGCTC 58.139 50.000 8.10 0.00 0.00 5.03
190 191 1.137282 TGGTTGTCTTGTGTACGCTCA 59.863 47.619 8.10 0.00 0.00 4.26
191 192 2.206750 GGTTGTCTTGTGTACGCTCAA 58.793 47.619 8.10 5.59 0.00 3.02
192 193 2.806244 GGTTGTCTTGTGTACGCTCAAT 59.194 45.455 8.10 0.00 0.00 2.57
193 194 3.250040 GGTTGTCTTGTGTACGCTCAATT 59.750 43.478 8.10 0.00 0.00 2.32
194 195 4.261031 GGTTGTCTTGTGTACGCTCAATTT 60.261 41.667 8.10 0.00 0.00 1.82
195 196 5.049954 GGTTGTCTTGTGTACGCTCAATTTA 60.050 40.000 8.10 0.00 0.00 1.40
196 197 6.423862 GTTGTCTTGTGTACGCTCAATTTAA 58.576 36.000 8.10 0.00 0.00 1.52
197 198 6.795098 TGTCTTGTGTACGCTCAATTTAAT 57.205 33.333 8.10 0.00 0.00 1.40
198 199 6.598525 TGTCTTGTGTACGCTCAATTTAATG 58.401 36.000 8.10 0.00 0.00 1.90
199 200 6.021596 GTCTTGTGTACGCTCAATTTAATGG 58.978 40.000 8.10 0.00 0.00 3.16
200 201 4.349663 TGTGTACGCTCAATTTAATGGC 57.650 40.909 8.10 0.00 0.00 4.40
201 202 4.006989 TGTGTACGCTCAATTTAATGGCT 58.993 39.130 8.10 0.00 0.00 4.75
202 203 4.457603 TGTGTACGCTCAATTTAATGGCTT 59.542 37.500 8.10 0.00 0.00 4.35
203 204 5.048364 TGTGTACGCTCAATTTAATGGCTTT 60.048 36.000 8.10 0.00 0.00 3.51
204 205 6.149640 TGTGTACGCTCAATTTAATGGCTTTA 59.850 34.615 8.10 0.00 0.00 1.85
205 206 7.024768 GTGTACGCTCAATTTAATGGCTTTAA 58.975 34.615 0.00 1.77 0.00 1.52
206 207 7.539366 GTGTACGCTCAATTTAATGGCTTTAAA 59.461 33.333 17.35 17.35 42.43 1.52
207 208 8.082852 TGTACGCTCAATTTAATGGCTTTAAAA 58.917 29.630 18.50 5.67 41.76 1.52
208 209 7.581011 ACGCTCAATTTAATGGCTTTAAAAG 57.419 32.000 18.50 13.68 41.76 2.27
209 210 7.375053 ACGCTCAATTTAATGGCTTTAAAAGA 58.625 30.769 18.50 17.15 41.76 2.52
210 211 7.870445 ACGCTCAATTTAATGGCTTTAAAAGAA 59.130 29.630 18.50 8.71 41.76 2.52
211 212 8.872845 CGCTCAATTTAATGGCTTTAAAAGAAT 58.127 29.630 18.50 3.80 41.76 2.40
220 221 7.899178 ATGGCTTTAAAAGAATTAAAACCGG 57.101 32.000 0.00 0.00 34.50 5.28
221 222 5.697178 TGGCTTTAAAAGAATTAAAACCGGC 59.303 36.000 0.00 4.39 34.50 6.13
222 223 5.697178 GGCTTTAAAAGAATTAAAACCGGCA 59.303 36.000 0.00 0.00 0.00 5.69
223 224 6.347079 GGCTTTAAAAGAATTAAAACCGGCAC 60.347 38.462 0.00 0.00 0.00 5.01
224 225 6.422701 GCTTTAAAAGAATTAAAACCGGCACT 59.577 34.615 0.00 0.00 0.00 4.40
225 226 7.042321 GCTTTAAAAGAATTAAAACCGGCACTT 60.042 33.333 0.00 0.00 0.00 3.16
226 227 8.719560 TTTAAAAGAATTAAAACCGGCACTTT 57.280 26.923 0.00 1.13 0.00 2.66
227 228 8.719560 TTAAAAGAATTAAAACCGGCACTTTT 57.280 26.923 0.00 3.65 38.92 2.27
228 229 7.618502 AAAAGAATTAAAACCGGCACTTTTT 57.381 28.000 0.00 3.24 34.26 1.94
292 293 6.773976 TTTATTAGCAGAATTGAGTTGGGG 57.226 37.500 0.00 0.00 0.00 4.96
293 294 2.806945 TAGCAGAATTGAGTTGGGGG 57.193 50.000 0.00 0.00 0.00 5.40
350 352 6.549242 AGATTGAATTGGATGGCTGATATCA 58.451 36.000 5.07 5.07 0.00 2.15
388 390 0.582960 CGTGGGTTAACAACGTGACC 59.417 55.000 19.37 6.43 0.00 4.02
399 401 1.816863 AACGTGACCGCAGAGGACAT 61.817 55.000 0.00 0.00 45.69 3.06
442 444 4.379243 CGTCGCCAACAGCTCCCT 62.379 66.667 0.00 0.00 40.39 4.20
443 445 2.435059 GTCGCCAACAGCTCCCTC 60.435 66.667 0.00 0.00 40.39 4.30
444 446 2.604686 TCGCCAACAGCTCCCTCT 60.605 61.111 0.00 0.00 40.39 3.69
491 493 2.040412 AGGGAGAATCACAGACAAACCC 59.960 50.000 0.00 0.00 45.06 4.11
552 557 0.179084 CGCCACCGGTCTCAACATAT 60.179 55.000 2.59 0.00 0.00 1.78
553 558 1.067974 CGCCACCGGTCTCAACATATA 59.932 52.381 2.59 0.00 0.00 0.86
554 559 2.480845 GCCACCGGTCTCAACATATAC 58.519 52.381 2.59 0.00 0.00 1.47
555 560 2.102588 GCCACCGGTCTCAACATATACT 59.897 50.000 2.59 0.00 0.00 2.12
556 561 3.799232 GCCACCGGTCTCAACATATACTC 60.799 52.174 2.59 0.00 0.00 2.59
557 562 3.243771 CCACCGGTCTCAACATATACTCC 60.244 52.174 2.59 0.00 0.00 3.85
616 632 4.392138 GGGAGCAACATAGTACACAACTTC 59.608 45.833 0.00 0.00 39.80 3.01
645 661 1.605451 TCTTCTCCAACTCCGGCGA 60.605 57.895 9.30 0.00 0.00 5.54
646 662 1.183030 TCTTCTCCAACTCCGGCGAA 61.183 55.000 9.30 0.00 0.00 4.70
702 734 1.008327 TCCTCCTCCTCCTTGCACATA 59.992 52.381 0.00 0.00 0.00 2.29
705 1245 2.971330 CTCCTCCTCCTTGCACATAGAT 59.029 50.000 0.00 0.00 0.00 1.98
708 1248 4.590647 TCCTCCTCCTTGCACATAGATTAG 59.409 45.833 0.00 0.00 0.00 1.73
744 1285 7.737972 TCCAGATTCGTAACTTGAAAAATCA 57.262 32.000 0.00 0.00 0.00 2.57
769 1310 9.007252 CAAAATCTCAATCGATGATGAAGAAAC 57.993 33.333 0.00 0.00 37.44 2.78
771 1312 5.982356 TCTCAATCGATGATGAAGAAACCT 58.018 37.500 0.00 0.00 37.44 3.50
793 1334 1.611491 TGTGCTCACTGATCACGTGTA 59.389 47.619 16.51 2.58 32.20 2.90
794 1335 1.986378 GTGCTCACTGATCACGTGTAC 59.014 52.381 16.51 11.22 34.14 2.90
795 1336 1.067846 TGCTCACTGATCACGTGTACC 60.068 52.381 16.51 6.55 34.14 3.34
835 1377 2.925578 TCGCAGCCTGAAAAATCATG 57.074 45.000 0.00 0.00 0.00 3.07
896 1439 2.675767 GCTTCATGCATGTGTATCCG 57.324 50.000 25.43 8.85 42.31 4.18
1152 1715 4.884668 TTACTCAATCACGAACCTCCTT 57.115 40.909 0.00 0.00 0.00 3.36
1335 1916 4.456911 GGTTTGCTGACTCTGAATGAATGA 59.543 41.667 0.00 0.00 0.00 2.57
1336 1917 5.388944 GTTTGCTGACTCTGAATGAATGAC 58.611 41.667 0.00 0.00 0.00 3.06
1391 1972 2.440980 GCAATGGCTGGGGGTCTC 60.441 66.667 0.00 0.00 36.96 3.36
1500 2081 8.380099 TGGTTGTTGTTATAGGTAAGTTGATCT 58.620 33.333 0.00 0.00 0.00 2.75
1513 2098 5.337578 AAGTTGATCTCCTCTGCTAACTC 57.662 43.478 0.00 0.00 0.00 3.01
1590 2181 6.590234 ACATGTGATGTACTCAACTACTCA 57.410 37.500 0.00 0.00 42.78 3.41
1591 2182 7.175347 ACATGTGATGTACTCAACTACTCAT 57.825 36.000 0.00 0.00 42.78 2.90
1592 2183 7.038048 ACATGTGATGTACTCAACTACTCATG 58.962 38.462 0.00 0.00 42.78 3.07
1593 2184 6.590234 TGTGATGTACTCAACTACTCATGT 57.410 37.500 0.00 0.00 35.07 3.21
1594 2185 7.696992 TGTGATGTACTCAACTACTCATGTA 57.303 36.000 0.00 0.00 35.07 2.29
1595 2186 7.535997 TGTGATGTACTCAACTACTCATGTAC 58.464 38.462 0.00 0.00 35.07 2.90
1596 2187 7.175990 TGTGATGTACTCAACTACTCATGTACA 59.824 37.037 0.00 0.00 42.47 2.90
1598 2189 9.403583 TGATGTACTCAACTACTCATGTACATA 57.596 33.333 8.32 0.00 45.57 2.29
1604 2195 7.981789 ACTCAACTACTCATGTACATACCATTG 59.018 37.037 8.32 8.79 0.00 2.82
1656 2249 7.989947 AGTATTACAGGAGGGACTGAATTAA 57.010 36.000 0.00 0.00 41.55 1.40
1675 2268 7.497909 TGAATTAATAGGTTAGCACTAGTTGGC 59.502 37.037 0.00 0.00 0.00 4.52
1722 2316 6.665992 ACACTGGTTATCTGACAGTTCTAA 57.334 37.500 1.59 0.00 42.38 2.10
1745 2394 2.866156 TGCTTGAAGAAAGTGTCTGTCG 59.134 45.455 0.00 0.00 38.25 4.35
1747 2396 3.060205 GCTTGAAGAAAGTGTCTGTCGAC 60.060 47.826 9.11 9.11 38.25 4.20
1749 2398 2.429250 TGAAGAAAGTGTCTGTCGACCA 59.571 45.455 14.12 0.30 39.47 4.02
1764 2413 4.130118 GTCGACCATAGGCAGATCATTTT 58.870 43.478 3.51 0.00 0.00 1.82
1776 2425 5.694910 GGCAGATCATTTTATCAAGGCATTG 59.305 40.000 4.34 4.34 37.80 2.82
1779 2428 7.254319 GCAGATCATTTTATCAAGGCATTGTTG 60.254 37.037 11.36 1.63 37.68 3.33
1780 2429 7.762615 CAGATCATTTTATCAAGGCATTGTTGT 59.237 33.333 11.36 1.65 37.68 3.32
1781 2430 7.977853 AGATCATTTTATCAAGGCATTGTTGTC 59.022 33.333 11.36 0.00 37.68 3.18
1782 2431 7.230849 TCATTTTATCAAGGCATTGTTGTCT 57.769 32.000 11.36 0.00 40.30 3.41
1783 2432 8.347004 TCATTTTATCAAGGCATTGTTGTCTA 57.653 30.769 11.36 0.00 36.59 2.59
1791 2440 3.118592 AGGCATTGTTGTCTAGTCTAGGC 60.119 47.826 4.41 4.41 35.57 3.93
1846 2507 8.060931 TGAAGATATGAGTACAGCTGATATCC 57.939 38.462 23.35 10.30 45.76 2.59
1847 2508 6.691754 AGATATGAGTACAGCTGATATCCG 57.308 41.667 23.35 0.00 45.76 4.18
1848 2509 5.592282 AGATATGAGTACAGCTGATATCCGG 59.408 44.000 23.35 0.00 45.76 5.14
1851 2512 4.466827 TGAGTACAGCTGATATCCGGTTA 58.533 43.478 23.35 0.00 0.00 2.85
1893 2652 4.009675 CAAATTACCTGTTGGCTCTGCTA 58.990 43.478 0.00 0.00 36.63 3.49
1894 2653 4.510167 AATTACCTGTTGGCTCTGCTAT 57.490 40.909 0.00 0.00 36.63 2.97
1895 2654 5.630415 AATTACCTGTTGGCTCTGCTATA 57.370 39.130 0.00 0.00 36.63 1.31
1896 2655 5.832539 ATTACCTGTTGGCTCTGCTATAT 57.167 39.130 0.00 0.00 36.63 0.86
1903 2662 7.401493 ACCTGTTGGCTCTGCTATATATTATCT 59.599 37.037 0.00 0.00 36.63 1.98
1904 2663 7.710044 CCTGTTGGCTCTGCTATATATTATCTG 59.290 40.741 0.00 0.00 0.00 2.90
1906 2665 6.737720 TGGCTCTGCTATATATTATCTGGG 57.262 41.667 0.00 0.00 0.00 4.45
1913 2672 5.833667 TGCTATATATTATCTGGGGTCCTCG 59.166 44.000 0.00 0.00 0.00 4.63
1919 2678 1.196012 ATCTGGGGTCCTCGAAGAAC 58.804 55.000 0.00 0.00 34.09 3.01
1921 2680 0.977395 CTGGGGTCCTCGAAGAACTT 59.023 55.000 0.00 0.00 34.09 2.66
1924 2683 1.346722 GGGGTCCTCGAAGAACTTCAA 59.653 52.381 13.72 0.00 39.46 2.69
1976 2742 6.220930 TGAATATTTATTCCGCTAAGTCGCT 58.779 36.000 7.63 0.00 40.98 4.93
1978 2744 7.868922 TGAATATTTATTCCGCTAAGTCGCTTA 59.131 33.333 7.63 0.55 40.98 3.09
2034 2800 1.973281 CAACCGCATCAACAGGGCT 60.973 57.895 0.00 0.00 0.00 5.19
2180 2966 5.596845 TGGGTACTTTCTTGCACATTTTTC 58.403 37.500 0.00 0.00 0.00 2.29
2182 2968 5.221441 GGGTACTTTCTTGCACATTTTTCCT 60.221 40.000 0.00 0.00 0.00 3.36
2197 2990 1.740332 TTCCTTCACGCCGAGTCACA 61.740 55.000 0.00 0.00 0.00 3.58
2198 2991 1.079819 CCTTCACGCCGAGTCACAT 60.080 57.895 0.00 0.00 0.00 3.21
2235 3028 2.426024 TCACTTACATCGGCTAGGTGTC 59.574 50.000 2.09 0.00 41.02 3.67
2236 3029 2.165641 CACTTACATCGGCTAGGTGTCA 59.834 50.000 2.09 0.00 41.02 3.58
2237 3030 2.829720 ACTTACATCGGCTAGGTGTCAA 59.170 45.455 2.09 0.00 41.02 3.18
2239 3032 2.604046 ACATCGGCTAGGTGTCAATC 57.396 50.000 0.00 0.00 41.02 2.67
2240 3033 2.111384 ACATCGGCTAGGTGTCAATCT 58.889 47.619 0.00 0.00 41.02 2.40
2256 3059 8.311109 GGTGTCAATCTTGGTAAACCATTTTAT 58.689 33.333 1.96 0.00 46.97 1.40
2295 3103 7.095439 GCTGCTCTGACCATTATAATGTCTAAC 60.095 40.741 21.20 9.88 34.60 2.34
3584 6108 0.250081 GATCGGCTGTCCCATCCTTC 60.250 60.000 0.00 0.00 0.00 3.46
4015 6605 2.880268 CAGAGCAAGTGGTTGTGATTGA 59.120 45.455 0.00 0.00 35.92 2.57
4031 6629 7.575414 TGTGATTGAAAGCCTTGTTAGTAAA 57.425 32.000 0.00 0.00 0.00 2.01
4141 6874 8.695456 TGTATCTGCTAGTGTAGAATTTCATCA 58.305 33.333 0.00 0.00 38.37 3.07
4154 6887 2.440796 CATCAGCGCCCCCATGTT 60.441 61.111 2.29 0.00 0.00 2.71
4357 7091 1.348696 TGCTCTCACCAAGCATCTTCA 59.651 47.619 0.00 0.00 44.51 3.02
4367 7101 4.225942 ACCAAGCATCTTCATCTACCTCAA 59.774 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.349983 GCTCACTTCCTTTACACAAGAATTTAA 58.650 33.333 0.00 0.00 0.00 1.52
5 6 6.239036 GGCTCACTTCCTTTACACAAGAATTT 60.239 38.462 0.00 0.00 0.00 1.82
6 7 5.241728 GGCTCACTTCCTTTACACAAGAATT 59.758 40.000 0.00 0.00 0.00 2.17
7 8 4.762251 GGCTCACTTCCTTTACACAAGAAT 59.238 41.667 0.00 0.00 0.00 2.40
8 9 4.134563 GGCTCACTTCCTTTACACAAGAA 58.865 43.478 0.00 0.00 0.00 2.52
9 10 3.391296 AGGCTCACTTCCTTTACACAAGA 59.609 43.478 0.00 0.00 0.00 3.02
10 11 3.744660 AGGCTCACTTCCTTTACACAAG 58.255 45.455 0.00 0.00 0.00 3.16
11 12 3.857157 AGGCTCACTTCCTTTACACAA 57.143 42.857 0.00 0.00 0.00 3.33
12 13 3.306780 GCTAGGCTCACTTCCTTTACACA 60.307 47.826 0.00 0.00 35.21 3.72
13 14 3.055747 AGCTAGGCTCACTTCCTTTACAC 60.056 47.826 0.00 0.00 30.62 2.90
14 15 3.173965 AGCTAGGCTCACTTCCTTTACA 58.826 45.455 0.00 0.00 30.62 2.41
15 16 3.897141 AGCTAGGCTCACTTCCTTTAC 57.103 47.619 0.00 0.00 30.62 2.01
37 38 1.556911 CATCCACTCCACTAGCCAAGT 59.443 52.381 0.00 0.00 39.81 3.16
38 39 1.556911 ACATCCACTCCACTAGCCAAG 59.443 52.381 0.00 0.00 0.00 3.61
39 40 1.656587 ACATCCACTCCACTAGCCAA 58.343 50.000 0.00 0.00 0.00 4.52
40 41 2.108168 GTACATCCACTCCACTAGCCA 58.892 52.381 0.00 0.00 0.00 4.75
41 42 2.108168 TGTACATCCACTCCACTAGCC 58.892 52.381 0.00 0.00 0.00 3.93
42 43 3.522553 GTTGTACATCCACTCCACTAGC 58.477 50.000 0.00 0.00 0.00 3.42
43 44 3.118738 GGGTTGTACATCCACTCCACTAG 60.119 52.174 21.70 0.00 0.00 2.57
44 45 2.835764 GGGTTGTACATCCACTCCACTA 59.164 50.000 21.70 0.00 0.00 2.74
45 46 1.628846 GGGTTGTACATCCACTCCACT 59.371 52.381 21.70 0.00 0.00 4.00
46 47 1.349688 TGGGTTGTACATCCACTCCAC 59.650 52.381 21.70 3.68 0.00 4.02
47 48 1.628340 CTGGGTTGTACATCCACTCCA 59.372 52.381 21.70 13.19 0.00 3.86
48 49 1.679032 GCTGGGTTGTACATCCACTCC 60.679 57.143 21.70 9.94 0.00 3.85
49 50 1.679032 GGCTGGGTTGTACATCCACTC 60.679 57.143 21.70 7.15 0.00 3.51
50 51 0.328258 GGCTGGGTTGTACATCCACT 59.672 55.000 21.70 0.00 0.00 4.00
51 52 0.037590 TGGCTGGGTTGTACATCCAC 59.962 55.000 21.70 12.88 29.84 4.02
52 53 0.037590 GTGGCTGGGTTGTACATCCA 59.962 55.000 21.70 18.21 32.18 3.41
53 54 0.679960 GGTGGCTGGGTTGTACATCC 60.680 60.000 13.72 13.72 0.00 3.51
54 55 0.679960 GGGTGGCTGGGTTGTACATC 60.680 60.000 0.00 0.00 0.00 3.06
55 56 1.382629 GGGTGGCTGGGTTGTACAT 59.617 57.895 0.00 0.00 0.00 2.29
56 57 2.063015 CTGGGTGGCTGGGTTGTACA 62.063 60.000 0.00 0.00 0.00 2.90
57 58 1.303317 CTGGGTGGCTGGGTTGTAC 60.303 63.158 0.00 0.00 0.00 2.90
58 59 2.534396 CCTGGGTGGCTGGGTTGTA 61.534 63.158 0.00 0.00 0.00 2.41
59 60 3.902112 CCTGGGTGGCTGGGTTGT 61.902 66.667 0.00 0.00 0.00 3.32
60 61 3.451056 AACCTGGGTGGCTGGGTTG 62.451 63.158 0.00 0.00 40.10 3.77
61 62 3.110031 AACCTGGGTGGCTGGGTT 61.110 61.111 0.00 0.00 40.22 4.11
62 63 3.580319 GAACCTGGGTGGCTGGGT 61.580 66.667 0.00 0.00 40.22 4.51
63 64 3.145473 TTGAACCTGGGTGGCTGGG 62.145 63.158 0.00 0.00 40.22 4.45
64 65 1.604593 CTTGAACCTGGGTGGCTGG 60.605 63.158 0.00 0.00 40.22 4.85
65 66 0.890996 GACTTGAACCTGGGTGGCTG 60.891 60.000 0.00 0.00 40.22 4.85
66 67 1.456287 GACTTGAACCTGGGTGGCT 59.544 57.895 0.00 0.00 40.22 4.75
67 68 1.603739 GGACTTGAACCTGGGTGGC 60.604 63.158 0.00 0.00 40.22 5.01
68 69 0.036875 GAGGACTTGAACCTGGGTGG 59.963 60.000 0.00 0.00 37.93 4.61
69 70 0.764890 TGAGGACTTGAACCTGGGTG 59.235 55.000 0.00 0.00 37.93 4.61
70 71 0.765510 GTGAGGACTTGAACCTGGGT 59.234 55.000 0.00 0.00 37.93 4.51
71 72 0.764890 TGTGAGGACTTGAACCTGGG 59.235 55.000 0.00 0.00 37.93 4.45
72 73 1.271054 CCTGTGAGGACTTGAACCTGG 60.271 57.143 0.00 0.00 37.67 4.45
73 74 1.879796 GCCTGTGAGGACTTGAACCTG 60.880 57.143 0.00 0.00 37.67 4.00
74 75 0.398318 GCCTGTGAGGACTTGAACCT 59.602 55.000 0.00 0.00 37.67 3.50
75 76 0.951040 CGCCTGTGAGGACTTGAACC 60.951 60.000 0.00 0.00 37.67 3.62
76 77 1.569479 GCGCCTGTGAGGACTTGAAC 61.569 60.000 0.00 0.00 37.67 3.18
77 78 1.301716 GCGCCTGTGAGGACTTGAA 60.302 57.895 0.00 0.00 37.67 2.69
78 79 2.343758 GCGCCTGTGAGGACTTGA 59.656 61.111 0.00 0.00 37.67 3.02
79 80 3.114616 CGCGCCTGTGAGGACTTG 61.115 66.667 0.00 0.00 37.67 3.16
80 81 2.172483 ATTCGCGCCTGTGAGGACTT 62.172 55.000 0.00 0.00 37.67 3.01
81 82 2.172483 AATTCGCGCCTGTGAGGACT 62.172 55.000 0.00 0.00 37.67 3.85
82 83 1.298859 AAATTCGCGCCTGTGAGGAC 61.299 55.000 0.00 0.00 37.67 3.85
83 84 1.003839 AAATTCGCGCCTGTGAGGA 60.004 52.632 0.00 0.00 37.67 3.71
84 85 1.135315 CAAATTCGCGCCTGTGAGG 59.865 57.895 0.00 0.00 38.80 3.86
85 86 1.135315 CCAAATTCGCGCCTGTGAG 59.865 57.895 0.00 0.00 35.71 3.51
86 87 2.331893 CCCAAATTCGCGCCTGTGA 61.332 57.895 0.00 0.00 0.00 3.58
87 88 2.141122 AACCCAAATTCGCGCCTGTG 62.141 55.000 0.00 0.00 0.00 3.66
88 89 1.862602 GAACCCAAATTCGCGCCTGT 61.863 55.000 0.00 0.00 0.00 4.00
89 90 1.154035 GAACCCAAATTCGCGCCTG 60.154 57.895 0.00 0.00 0.00 4.85
90 91 0.893727 AAGAACCCAAATTCGCGCCT 60.894 50.000 0.00 0.00 33.57 5.52
91 92 0.806241 TAAGAACCCAAATTCGCGCC 59.194 50.000 0.00 0.00 33.57 6.53
92 93 2.844122 ATAAGAACCCAAATTCGCGC 57.156 45.000 0.00 0.00 33.57 6.86
93 94 8.844441 TTAAATAATAAGAACCCAAATTCGCG 57.156 30.769 0.00 0.00 33.57 5.87
109 110 9.834628 CCACAGCGAGTTTTCTTTTAAATAATA 57.165 29.630 0.00 0.00 0.00 0.98
110 111 7.812669 CCCACAGCGAGTTTTCTTTTAAATAAT 59.187 33.333 0.00 0.00 0.00 1.28
111 112 7.142680 CCCACAGCGAGTTTTCTTTTAAATAA 58.857 34.615 0.00 0.00 0.00 1.40
112 113 6.294286 CCCCACAGCGAGTTTTCTTTTAAATA 60.294 38.462 0.00 0.00 0.00 1.40
113 114 5.508994 CCCCACAGCGAGTTTTCTTTTAAAT 60.509 40.000 0.00 0.00 0.00 1.40
114 115 4.202070 CCCCACAGCGAGTTTTCTTTTAAA 60.202 41.667 0.00 0.00 0.00 1.52
115 116 3.316868 CCCCACAGCGAGTTTTCTTTTAA 59.683 43.478 0.00 0.00 0.00 1.52
116 117 2.882137 CCCCACAGCGAGTTTTCTTTTA 59.118 45.455 0.00 0.00 0.00 1.52
117 118 1.681264 CCCCACAGCGAGTTTTCTTTT 59.319 47.619 0.00 0.00 0.00 2.27
118 119 1.318576 CCCCACAGCGAGTTTTCTTT 58.681 50.000 0.00 0.00 0.00 2.52
119 120 0.537371 CCCCCACAGCGAGTTTTCTT 60.537 55.000 0.00 0.00 0.00 2.52
120 121 1.073199 CCCCCACAGCGAGTTTTCT 59.927 57.895 0.00 0.00 0.00 2.52
121 122 3.668386 CCCCCACAGCGAGTTTTC 58.332 61.111 0.00 0.00 0.00 2.29
137 138 0.039764 AAAAGCAGTAGGGGAAGCCC 59.960 55.000 0.00 0.00 44.51 5.19
138 139 1.004862 AGAAAAGCAGTAGGGGAAGCC 59.995 52.381 0.00 0.00 0.00 4.35
139 140 2.498644 AGAAAAGCAGTAGGGGAAGC 57.501 50.000 0.00 0.00 0.00 3.86
140 141 3.437049 CGAAAGAAAAGCAGTAGGGGAAG 59.563 47.826 0.00 0.00 0.00 3.46
141 142 3.071892 TCGAAAGAAAAGCAGTAGGGGAA 59.928 43.478 0.00 0.00 37.03 3.97
142 143 2.635915 TCGAAAGAAAAGCAGTAGGGGA 59.364 45.455 0.00 0.00 37.03 4.81
143 144 3.053831 TCGAAAGAAAAGCAGTAGGGG 57.946 47.619 0.00 0.00 37.03 4.79
165 166 4.097286 AGCGTACACAAGACAACCATTTTT 59.903 37.500 0.00 0.00 0.00 1.94
166 167 3.630312 AGCGTACACAAGACAACCATTTT 59.370 39.130 0.00 0.00 0.00 1.82
167 168 3.211045 AGCGTACACAAGACAACCATTT 58.789 40.909 0.00 0.00 0.00 2.32
168 169 2.806244 GAGCGTACACAAGACAACCATT 59.194 45.455 0.00 0.00 0.00 3.16
169 170 2.224185 TGAGCGTACACAAGACAACCAT 60.224 45.455 0.00 0.00 0.00 3.55
170 171 1.137282 TGAGCGTACACAAGACAACCA 59.863 47.619 0.00 0.00 0.00 3.67
171 172 1.860676 TGAGCGTACACAAGACAACC 58.139 50.000 0.00 0.00 0.00 3.77
172 173 4.468095 AATTGAGCGTACACAAGACAAC 57.532 40.909 0.00 0.00 29.62 3.32
173 174 6.606234 TTAAATTGAGCGTACACAAGACAA 57.394 33.333 0.00 0.00 29.62 3.18
174 175 6.348132 CCATTAAATTGAGCGTACACAAGACA 60.348 38.462 0.00 0.00 29.62 3.41
175 176 6.021596 CCATTAAATTGAGCGTACACAAGAC 58.978 40.000 0.00 0.00 29.62 3.01
176 177 5.391523 GCCATTAAATTGAGCGTACACAAGA 60.392 40.000 0.00 0.00 29.62 3.02
177 178 4.793216 GCCATTAAATTGAGCGTACACAAG 59.207 41.667 0.00 0.00 29.62 3.16
178 179 4.457603 AGCCATTAAATTGAGCGTACACAA 59.542 37.500 0.00 0.00 0.00 3.33
179 180 4.006989 AGCCATTAAATTGAGCGTACACA 58.993 39.130 0.00 0.00 0.00 3.72
180 181 4.616181 AGCCATTAAATTGAGCGTACAC 57.384 40.909 0.00 0.00 0.00 2.90
181 182 5.637006 AAAGCCATTAAATTGAGCGTACA 57.363 34.783 0.00 0.00 0.00 2.90
182 183 8.455598 TTTTAAAGCCATTAAATTGAGCGTAC 57.544 30.769 6.02 0.00 41.76 3.67
183 184 8.516234 TCTTTTAAAGCCATTAAATTGAGCGTA 58.484 29.630 0.00 0.00 41.76 4.42
184 185 7.375053 TCTTTTAAAGCCATTAAATTGAGCGT 58.625 30.769 0.00 0.00 41.76 5.07
185 186 7.810766 TCTTTTAAAGCCATTAAATTGAGCG 57.189 32.000 0.00 0.00 41.76 5.03
194 195 9.425577 CCGGTTTTAATTCTTTTAAAGCCATTA 57.574 29.630 17.90 3.10 42.00 1.90
195 196 7.094975 GCCGGTTTTAATTCTTTTAAAGCCATT 60.095 33.333 17.90 3.97 42.00 3.16
196 197 6.370442 GCCGGTTTTAATTCTTTTAAAGCCAT 59.630 34.615 17.90 0.00 42.00 4.40
197 198 5.697178 GCCGGTTTTAATTCTTTTAAAGCCA 59.303 36.000 17.90 0.00 42.00 4.75
198 199 5.697178 TGCCGGTTTTAATTCTTTTAAAGCC 59.303 36.000 1.90 11.47 39.98 4.35
199 200 6.422701 AGTGCCGGTTTTAATTCTTTTAAAGC 59.577 34.615 1.90 0.00 31.78 3.51
200 201 7.940178 AGTGCCGGTTTTAATTCTTTTAAAG 57.060 32.000 1.90 0.00 0.00 1.85
201 202 8.719560 AAAGTGCCGGTTTTAATTCTTTTAAA 57.280 26.923 1.90 0.00 0.00 1.52
202 203 8.719560 AAAAGTGCCGGTTTTAATTCTTTTAA 57.280 26.923 1.90 0.00 33.90 1.52
203 204 8.719560 AAAAAGTGCCGGTTTTAATTCTTTTA 57.280 26.923 1.90 0.00 34.34 1.52
204 205 7.618502 AAAAAGTGCCGGTTTTAATTCTTTT 57.381 28.000 1.90 6.33 36.08 2.27
266 267 9.082313 CCCCAACTCAATTCTGCTAATAAATAT 57.918 33.333 0.00 0.00 0.00 1.28
267 268 7.505585 CCCCCAACTCAATTCTGCTAATAAATA 59.494 37.037 0.00 0.00 0.00 1.40
268 269 6.324770 CCCCCAACTCAATTCTGCTAATAAAT 59.675 38.462 0.00 0.00 0.00 1.40
269 270 5.656416 CCCCCAACTCAATTCTGCTAATAAA 59.344 40.000 0.00 0.00 0.00 1.40
270 271 5.200483 CCCCCAACTCAATTCTGCTAATAA 58.800 41.667 0.00 0.00 0.00 1.40
271 272 4.792068 CCCCCAACTCAATTCTGCTAATA 58.208 43.478 0.00 0.00 0.00 0.98
272 273 3.635591 CCCCCAACTCAATTCTGCTAAT 58.364 45.455 0.00 0.00 0.00 1.73
273 274 3.085952 CCCCCAACTCAATTCTGCTAA 57.914 47.619 0.00 0.00 0.00 3.09
274 275 2.806945 CCCCCAACTCAATTCTGCTA 57.193 50.000 0.00 0.00 0.00 3.49
275 276 3.677963 CCCCCAACTCAATTCTGCT 57.322 52.632 0.00 0.00 0.00 4.24
308 309 3.876198 CACGGCTGTAATGCGCCC 61.876 66.667 4.18 0.00 43.38 6.13
309 310 2.813179 CTCACGGCTGTAATGCGCC 61.813 63.158 4.18 0.00 42.86 6.53
310 311 1.154205 ATCTCACGGCTGTAATGCGC 61.154 55.000 0.00 0.00 0.00 6.09
311 312 1.004610 CAATCTCACGGCTGTAATGCG 60.005 52.381 0.00 0.00 0.00 4.73
312 313 2.279741 TCAATCTCACGGCTGTAATGC 58.720 47.619 0.00 0.00 0.00 3.56
313 314 5.268544 CAATTCAATCTCACGGCTGTAATG 58.731 41.667 0.00 0.00 0.00 1.90
316 317 3.055458 TCCAATTCAATCTCACGGCTGTA 60.055 43.478 0.00 0.00 0.00 2.74
388 390 1.336702 GCTATCTCCATGTCCTCTGCG 60.337 57.143 0.00 0.00 0.00 5.18
435 437 0.902516 AGTTTGCGAGAGAGGGAGCT 60.903 55.000 0.00 0.00 0.00 4.09
441 443 0.795085 CAGCCAAGTTTGCGAGAGAG 59.205 55.000 0.00 0.00 0.00 3.20
442 444 0.603707 CCAGCCAAGTTTGCGAGAGA 60.604 55.000 0.00 0.00 0.00 3.10
443 445 1.871772 CCAGCCAAGTTTGCGAGAG 59.128 57.895 0.00 0.00 0.00 3.20
444 446 2.260869 GCCAGCCAAGTTTGCGAGA 61.261 57.895 0.00 0.00 0.00 4.04
491 493 1.660575 CGATTACGGTAGCAGGCGG 60.661 63.158 0.00 0.00 35.72 6.13
552 557 6.405508 GCGTTGCTATTGCCTATATAGGAGTA 60.406 42.308 29.64 15.55 46.63 2.59
553 558 5.624738 GCGTTGCTATTGCCTATATAGGAGT 60.625 44.000 29.64 16.82 46.63 3.85
554 559 4.806247 GCGTTGCTATTGCCTATATAGGAG 59.194 45.833 29.64 18.98 46.63 3.69
555 560 4.221924 TGCGTTGCTATTGCCTATATAGGA 59.778 41.667 29.64 12.32 46.63 2.94
556 561 4.503910 TGCGTTGCTATTGCCTATATAGG 58.496 43.478 22.63 22.63 46.42 2.57
557 562 4.568359 CCTGCGTTGCTATTGCCTATATAG 59.432 45.833 2.46 2.46 38.71 1.31
591 600 2.546899 TGTGTACTATGTTGCTCCCCT 58.453 47.619 0.00 0.00 0.00 4.79
592 601 3.007635 GTTGTGTACTATGTTGCTCCCC 58.992 50.000 0.00 0.00 0.00 4.81
616 632 3.194542 AGTTGGAGAAGACGATCCTGAAG 59.805 47.826 0.00 0.00 36.50 3.02
645 661 2.158696 AGAGATAGTACGTACCCGCCTT 60.159 50.000 21.80 5.15 37.70 4.35
646 662 1.419387 AGAGATAGTACGTACCCGCCT 59.581 52.381 21.80 13.50 37.70 5.52
744 1285 8.186821 GGTTTCTTCATCATCGATTGAGATTTT 58.813 33.333 0.00 0.00 37.89 1.82
769 1310 1.436600 GTGATCAGTGAGCACACAGG 58.563 55.000 31.24 8.19 46.52 4.00
793 1334 9.167311 GCGAATCTGGAATTAATTATAGATGGT 57.833 33.333 19.50 10.49 0.00 3.55
794 1335 9.166173 TGCGAATCTGGAATTAATTATAGATGG 57.834 33.333 19.50 16.45 0.00 3.51
821 1362 6.392354 TCAATTGAGACATGATTTTTCAGGC 58.608 36.000 3.38 0.00 0.00 4.85
857 1399 5.717078 AGCATGATCAATGAACACACTTT 57.283 34.783 0.00 0.00 38.72 2.66
1074 1637 1.318158 CCAAGAGGGTGAGCAATGCC 61.318 60.000 0.00 0.00 0.00 4.40
1223 1786 0.898320 GCTAACCTGACTGAGCTGGA 59.102 55.000 0.00 0.00 32.04 3.86
1260 1833 7.545265 GGAAGCTGTTGCATAAATAAATGAACA 59.455 33.333 0.00 0.00 42.74 3.18
1261 1834 7.761249 AGGAAGCTGTTGCATAAATAAATGAAC 59.239 33.333 0.00 0.00 42.74 3.18
1281 1862 3.325293 TTGTCTGTCTCATCAGGAAGC 57.675 47.619 0.00 0.00 36.25 3.86
1346 1927 1.668419 CCGAAGGCCAGTTATCCTTG 58.332 55.000 5.01 0.00 46.14 3.61
1382 1963 2.435120 TACTGAGCACGAGACCCCCA 62.435 60.000 0.00 0.00 0.00 4.96
1391 1972 1.066143 AGGTTCCCAATACTGAGCACG 60.066 52.381 0.00 0.00 0.00 5.34
1500 2081 1.067565 CGCACTTGAGTTAGCAGAGGA 60.068 52.381 0.00 0.00 0.00 3.71
1513 2098 4.685169 ATAAGAATGTTCACCGCACTTG 57.315 40.909 0.00 0.00 0.00 3.16
1580 2171 7.847096 ACAATGGTATGTACATGAGTAGTTGA 58.153 34.615 18.81 0.00 0.00 3.18
1581 2172 8.390354 CAACAATGGTATGTACATGAGTAGTTG 58.610 37.037 18.81 18.60 32.02 3.16
1583 2174 7.847096 TCAACAATGGTATGTACATGAGTAGT 58.153 34.615 18.81 7.15 32.02 2.73
1584 2175 8.893219 ATCAACAATGGTATGTACATGAGTAG 57.107 34.615 18.81 6.56 32.02 2.57
1585 2176 8.482128 TGATCAACAATGGTATGTACATGAGTA 58.518 33.333 18.81 2.78 32.02 2.59
1586 2177 7.337938 TGATCAACAATGGTATGTACATGAGT 58.662 34.615 18.81 4.98 32.02 3.41
1587 2178 7.790823 TGATCAACAATGGTATGTACATGAG 57.209 36.000 18.81 4.40 32.02 2.90
1588 2179 9.844257 TTATGATCAACAATGGTATGTACATGA 57.156 29.630 18.81 5.57 32.02 3.07
1624 2215 9.765795 CAGTCCCTCCTGTAATACTTAATAAAG 57.234 37.037 0.00 0.00 38.77 1.85
1626 2217 9.496710 TTCAGTCCCTCCTGTAATACTTAATAA 57.503 33.333 0.00 0.00 34.02 1.40
1630 2221 7.989947 AATTCAGTCCCTCCTGTAATACTTA 57.010 36.000 0.00 0.00 34.02 2.24
1632 2223 7.989947 TTAATTCAGTCCCTCCTGTAATACT 57.010 36.000 0.00 0.00 34.02 2.12
1634 2225 9.101325 CCTATTAATTCAGTCCCTCCTGTAATA 57.899 37.037 0.00 0.00 34.02 0.98
1656 2249 6.156429 ACTTAAGCCAACTAGTGCTAACCTAT 59.844 38.462 8.04 0.00 36.66 2.57
1675 2268 4.664150 TTGGGCAAAAGACCAACTTAAG 57.336 40.909 0.00 0.00 41.56 1.85
1722 2316 4.024556 CGACAGACACTTTCTTCAAGCAAT 60.025 41.667 0.00 0.00 35.65 3.56
1745 2394 7.094463 CCTTGATAAAATGATCTGCCTATGGTC 60.094 40.741 0.00 0.00 0.00 4.02
1747 2396 6.349944 GCCTTGATAAAATGATCTGCCTATGG 60.350 42.308 0.00 0.00 0.00 2.74
1749 2398 6.309357 TGCCTTGATAAAATGATCTGCCTAT 58.691 36.000 0.00 0.00 0.00 2.57
1764 2413 6.299805 AGACTAGACAACAATGCCTTGATA 57.700 37.500 8.84 0.00 36.20 2.15
1776 2425 7.360185 GCTGTTTTTAAGCCTAGACTAGACAAC 60.360 40.741 11.27 0.72 34.45 3.32
1779 2428 6.399743 AGCTGTTTTTAAGCCTAGACTAGAC 58.600 40.000 11.27 0.00 41.82 2.59
1780 2429 6.210784 TGAGCTGTTTTTAAGCCTAGACTAGA 59.789 38.462 11.27 0.00 41.82 2.43
1781 2430 6.398918 TGAGCTGTTTTTAAGCCTAGACTAG 58.601 40.000 2.18 2.18 41.82 2.57
1782 2431 6.354794 TGAGCTGTTTTTAAGCCTAGACTA 57.645 37.500 0.00 0.00 41.82 2.59
1783 2432 5.228945 TGAGCTGTTTTTAAGCCTAGACT 57.771 39.130 0.00 0.00 41.82 3.24
1791 2440 9.552114 CTGTTCATATCTTGAGCTGTTTTTAAG 57.448 33.333 0.00 0.00 36.59 1.85
1846 2507 7.971168 TGGTGCATCTGTTTAATTAATTAACCG 59.029 33.333 18.16 10.64 32.42 4.44
1847 2508 9.646427 TTGGTGCATCTGTTTAATTAATTAACC 57.354 29.630 18.16 13.07 32.42 2.85
1893 2652 6.742756 TCTTCGAGGACCCCAGATAATATAT 58.257 40.000 0.00 0.00 0.00 0.86
1894 2653 6.148735 TCTTCGAGGACCCCAGATAATATA 57.851 41.667 0.00 0.00 0.00 0.86
1895 2654 5.011982 TCTTCGAGGACCCCAGATAATAT 57.988 43.478 0.00 0.00 0.00 1.28
1896 2655 4.464652 TCTTCGAGGACCCCAGATAATA 57.535 45.455 0.00 0.00 0.00 0.98
1903 2662 0.974383 GAAGTTCTTCGAGGACCCCA 59.026 55.000 0.00 0.00 0.00 4.96
1904 2663 0.974383 TGAAGTTCTTCGAGGACCCC 59.026 55.000 4.17 0.00 0.00 4.95
1906 2665 3.243771 TGAGTTGAAGTTCTTCGAGGACC 60.244 47.826 4.17 0.00 0.00 4.46
1913 2672 7.114106 GCAGCTAAAAATGAGTTGAAGTTCTTC 59.886 37.037 4.17 5.70 0.00 2.87
1919 2678 5.182760 AGAGGCAGCTAAAAATGAGTTGAAG 59.817 40.000 0.00 0.00 0.00 3.02
1921 2680 4.655963 AGAGGCAGCTAAAAATGAGTTGA 58.344 39.130 0.00 0.00 0.00 3.18
1924 2683 7.709149 AATAAAGAGGCAGCTAAAAATGAGT 57.291 32.000 0.00 0.00 0.00 3.41
1951 2714 6.874134 AGCGACTTAGCGGAATAAATATTCAT 59.126 34.615 13.55 3.74 40.75 2.57
1967 2733 7.126398 GCCTGAAAATACAATAAGCGACTTAG 58.874 38.462 5.72 0.00 29.02 2.18
1976 2742 7.013750 TCAGTGTTGTGCCTGAAAATACAATAA 59.986 33.333 0.00 0.00 34.88 1.40
1978 2744 5.301551 TCAGTGTTGTGCCTGAAAATACAAT 59.698 36.000 0.00 0.00 34.88 2.71
2180 2966 0.172578 TATGTGACTCGGCGTGAAGG 59.827 55.000 16.57 0.87 0.00 3.46
2182 2968 4.316205 AATATATGTGACTCGGCGTGAA 57.684 40.909 16.57 0.43 0.00 3.18
2239 3032 9.357652 CATGAAGACATAAAATGGTTTACCAAG 57.642 33.333 5.58 0.00 41.33 3.61
2240 3033 8.310382 CCATGAAGACATAAAATGGTTTACCAA 58.690 33.333 5.58 0.00 41.33 3.67
2256 3059 1.072806 AGAGCAGCAACCATGAAGACA 59.927 47.619 0.00 0.00 0.00 3.41
2262 3065 0.607217 TGGTCAGAGCAGCAACCATG 60.607 55.000 0.00 0.00 36.88 3.66
2295 3103 4.630069 CGTACCTCCATTTGACCTGTTAAG 59.370 45.833 0.00 0.00 0.00 1.85
2304 3112 0.539986 GGCTCCGTACCTCCATTTGA 59.460 55.000 0.00 0.00 0.00 2.69
2383 3239 9.681062 AAATAGGCAAAGTTAGCAACTAGAATA 57.319 29.630 0.00 0.00 41.91 1.75
3584 6108 5.188751 AGTCCCAAACTAGAAGAAGAGATGG 59.811 44.000 0.00 0.00 36.07 3.51
3861 6448 3.874383 TGAGGTTGGACTCATTGGAAA 57.126 42.857 0.00 0.00 42.26 3.13
3948 6538 2.488153 GGGAACTTGATTTCTCCAACCG 59.512 50.000 0.00 0.00 0.00 4.44
4015 6605 7.722285 TCACATTACCTTTACTAACAAGGCTTT 59.278 33.333 0.00 0.00 44.32 3.51
4077 6801 6.174720 AGATGATGGAGGCGTATTTTTCTA 57.825 37.500 0.00 0.00 0.00 2.10
4141 6874 2.990967 CAACAACATGGGGGCGCT 60.991 61.111 7.64 0.00 0.00 5.92
4154 6887 6.262273 GGTCTGATTAGGACAAAAGTTCAACA 59.738 38.462 0.00 0.00 35.61 3.33
4201 6935 7.147724 GCACACCCATAATAGGACTATAGCATA 60.148 40.741 0.00 0.00 0.00 3.14
4207 6941 4.910458 GGCACACCCATAATAGGACTAT 57.090 45.455 0.00 0.00 0.00 2.12
4357 7091 5.656859 GGCTAAAATTGGGTTTGAGGTAGAT 59.343 40.000 0.00 0.00 30.03 1.98
4367 7101 8.201242 TCTCTTAATTTGGCTAAAATTGGGTT 57.799 30.769 16.18 2.57 45.89 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.