Multiple sequence alignment - TraesCS5D01G041000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G041000 chr5D 100.000 5939 0 0 1 5939 41551589 41545651 0.000000e+00 10968.0
1 TraesCS5D01G041000 chr5D 81.222 442 53 14 5116 5540 41810483 41810911 4.440000e-86 329.0
2 TraesCS5D01G041000 chr5D 86.149 296 36 2 1424 1719 428135290 428135580 1.240000e-81 315.0
3 TraesCS5D01G041000 chr5D 90.286 175 9 8 880 1049 168666506 168666677 7.750000e-54 222.0
4 TraesCS5D01G041000 chr5D 82.105 190 18 10 274 463 412079860 412080033 1.330000e-31 148.0
5 TraesCS5D01G041000 chr5B 91.983 4503 182 63 1078 5504 36221734 36217335 0.000000e+00 6150.0
6 TraesCS5D01G041000 chr5B 95.975 323 13 0 4896 5218 36227936 36227614 5.270000e-145 525.0
7 TraesCS5D01G041000 chr5B 93.031 287 12 8 224 508 36222775 36222495 4.280000e-111 412.0
8 TraesCS5D01G041000 chr5B 94.553 257 13 1 1 257 36228197 36227942 4.310000e-106 396.0
9 TraesCS5D01G041000 chr5B 90.625 288 14 9 590 875 36222335 36222059 2.610000e-98 370.0
10 TraesCS5D01G041000 chr5B 87.500 296 32 3 1424 1719 37736406 37736116 2.650000e-88 337.0
11 TraesCS5D01G041000 chr5B 81.089 349 34 24 51 375 36223014 36222674 3.550000e-62 250.0
12 TraesCS5D01G041000 chr5B 93.590 156 9 1 51 206 36224160 36224006 1.290000e-56 231.0
13 TraesCS5D01G041000 chr5A 94.375 4018 146 37 1131 5118 29896338 29892371 0.000000e+00 6095.0
14 TraesCS5D01G041000 chr5A 90.262 801 38 17 5147 5939 29892373 29891605 0.000000e+00 1011.0
15 TraesCS5D01G041000 chr5A 84.242 165 13 9 716 878 29896513 29896360 1.330000e-31 148.0
16 TraesCS5D01G041000 chr4B 90.955 785 46 8 1248 2008 645498928 645499711 0.000000e+00 1033.0
17 TraesCS5D01G041000 chr4B 89.163 203 18 3 1 200 189812022 189811821 3.550000e-62 250.0
18 TraesCS5D01G041000 chr4B 92.398 171 12 1 878 1048 365824537 365824706 5.950000e-60 243.0
19 TraesCS5D01G041000 chr4B 94.304 158 9 0 880 1037 365831722 365831879 5.950000e-60 243.0
20 TraesCS5D01G041000 chr4B 93.671 158 10 0 4377 4534 578297655 578297812 2.770000e-58 237.0
21 TraesCS5D01G041000 chr4B 93.506 154 10 0 4381 4534 555698159 555698006 4.630000e-56 230.0
22 TraesCS5D01G041000 chr4B 86.207 174 7 7 880 1048 560942222 560942061 7.910000e-39 172.0
23 TraesCS5D01G041000 chr7B 89.682 785 56 8 1248 2008 422868593 422869376 0.000000e+00 977.0
24 TraesCS5D01G041000 chr7B 94.805 154 8 0 4381 4534 711414993 711414840 2.140000e-59 241.0
25 TraesCS5D01G041000 chr7B 93.182 44 3 0 743 786 673283825 673283782 1.380000e-06 65.8
26 TraesCS5D01G041000 chr1D 87.838 296 31 2 1424 1719 123238469 123238759 5.700000e-90 342.0
27 TraesCS5D01G041000 chr6A 87.162 296 33 2 1424 1719 54393801 54393511 1.230000e-86 331.0
28 TraesCS5D01G041000 chr6A 88.750 160 16 2 40 199 383964482 383964325 1.690000e-45 195.0
29 TraesCS5D01G041000 chr6A 85.380 171 11 4 880 1048 30502476 30502318 1.320000e-36 165.0
30 TraesCS5D01G041000 chr6A 84.000 175 9 8 880 1048 30523592 30523431 3.710000e-32 150.0
31 TraesCS5D01G041000 chr3B 85.473 296 38 3 1424 1719 321022018 321021728 2.690000e-78 303.0
32 TraesCS5D01G041000 chr3B 85.473 296 38 2 1424 1719 324065234 324065524 2.690000e-78 303.0
33 TraesCS5D01G041000 chr3B 84.524 168 17 1 4 162 378896102 378895935 2.220000e-34 158.0
34 TraesCS5D01G041000 chr6B 93.878 147 9 0 4381 4527 689849881 689849735 7.750000e-54 222.0
35 TraesCS5D01G041000 chr6B 85.859 198 21 3 1 198 422321028 422320838 2.810000e-48 204.0
36 TraesCS5D01G041000 chr1A 91.071 168 9 6 879 1041 258914279 258914445 7.750000e-54 222.0
37 TraesCS5D01G041000 chr6D 86.935 199 19 3 1 199 269701687 269701496 3.600000e-52 217.0
38 TraesCS5D01G041000 chr6D 86.391 169 8 5 879 1044 462541644 462541488 2.850000e-38 171.0
39 TraesCS5D01G041000 chr6D 88.660 97 10 1 5545 5641 27848392 27848297 3.760000e-22 117.0
40 TraesCS5D01G041000 chr1B 92.208 154 11 1 4381 4534 23782024 23782176 3.600000e-52 217.0
41 TraesCS5D01G041000 chr1B 85.849 106 12 3 5539 5642 684089030 684089134 6.290000e-20 110.0
42 TraesCS5D01G041000 chrUn 92.517 147 11 0 4381 4527 61758497 61758351 1.680000e-50 211.0
43 TraesCS5D01G041000 chrUn 91.954 87 6 1 5545 5631 86631065 86630980 2.910000e-23 121.0
44 TraesCS5D01G041000 chr4A 94.118 136 8 0 4381 4516 133946044 133946179 2.170000e-49 207.0
45 TraesCS5D01G041000 chr4A 89.247 93 9 1 5540 5632 603447582 603447673 1.350000e-21 115.0
46 TraesCS5D01G041000 chr7D 90.385 156 12 3 881 1035 126512116 126511963 1.010000e-47 202.0
47 TraesCS5D01G041000 chr7D 90.426 94 7 2 5539 5632 167548509 167548418 8.080000e-24 122.0
48 TraesCS5D01G041000 chr2A 83.562 219 26 4 1 209 619641879 619642097 4.700000e-46 196.0
49 TraesCS5D01G041000 chr2A 83.981 206 22 4 4 199 31895394 31895190 2.830000e-43 187.0
50 TraesCS5D01G041000 chr2A 90.110 91 8 1 5540 5630 724519045 724518956 3.760000e-22 117.0
51 TraesCS5D01G041000 chr4D 87.037 162 16 4 880 1036 172046114 172045953 1.700000e-40 178.0
52 TraesCS5D01G041000 chr2D 82.353 204 19 8 19 209 24127921 24128120 1.710000e-35 161.0
53 TraesCS5D01G041000 chr3D 91.111 90 7 1 5542 5631 302930474 302930386 2.910000e-23 121.0
54 TraesCS5D01G041000 chr7A 90.909 88 7 1 5543 5630 670237244 670237330 3.760000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G041000 chr5D 41545651 41551589 5938 True 10968.000000 10968 100.000000 1 5939 1 chr5D.!!$R1 5938
1 TraesCS5D01G041000 chr5B 36217335 36228197 10862 True 1190.571429 6150 91.549429 1 5504 7 chr5B.!!$R2 5503
2 TraesCS5D01G041000 chr5A 29891605 29896513 4908 True 2418.000000 6095 89.626333 716 5939 3 chr5A.!!$R1 5223
3 TraesCS5D01G041000 chr4B 645498928 645499711 783 False 1033.000000 1033 90.955000 1248 2008 1 chr4B.!!$F4 760
4 TraesCS5D01G041000 chr7B 422868593 422869376 783 False 977.000000 977 89.682000 1248 2008 1 chr7B.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.947244 GCGATTCCGAGAAATGCCAT 59.053 50.000 0.00 0.0 38.22 4.40 F
798 6079 1.383523 GGAAGCCGGAAGAAAGGATG 58.616 55.000 5.05 0.0 0.00 3.51 F
1071 6352 0.818040 AACCAGCCACGTTCCAGTTC 60.818 55.000 0.00 0.0 0.00 3.01 F
1074 6355 1.071471 AGCCACGTTCCAGTTCCAG 59.929 57.895 0.00 0.0 0.00 3.86 F
1598 7005 1.197036 GCTCTGCTTTCGGTTGGTTAC 59.803 52.381 0.00 0.0 0.00 2.50 F
2383 7833 0.907704 TCCTGTTACATGCGACCCCT 60.908 55.000 0.00 0.0 0.00 4.79 F
3593 9056 0.040514 TGCGTCATGCCGAAAGTTTG 60.041 50.000 0.00 0.0 45.60 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1040 6321 0.110486 GGCTGGTTCACCAAAGAGGA 59.890 55.000 0.00 0.0 46.97 3.71 R
1804 7211 0.487772 ACCAGTAGGGGTGAGTGAGT 59.512 55.000 0.00 0.0 40.44 3.41 R
2021 7466 1.879380 TCACCTGAAAAGCGAACATGG 59.121 47.619 0.00 0.0 0.00 3.66 R
2289 7739 3.425162 ACTCCTGACCTGGAAACAATC 57.575 47.619 0.00 0.0 42.06 2.67 R
3207 8660 2.092861 TGTACCGGTTAATGACCCCATG 60.093 50.000 15.04 0.0 46.35 3.66 R
4303 9766 0.034059 AGAAGGTCTGTGGCAACGAG 59.966 55.000 0.00 0.0 42.51 4.18 R
4955 10429 0.322816 GAATGGCAGAGGACCAGCAA 60.323 55.000 0.00 0.0 41.46 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.947244 GCGATTCCGAGAAATGCCAT 59.053 50.000 0.00 0.00 38.22 4.40
89 90 4.999751 TGCAAACTTTGAAAAACACCAC 57.000 36.364 5.65 0.00 0.00 4.16
107 108 9.581099 AAACACCACTGTAGACTTTAAAAATTG 57.419 29.630 0.00 0.00 0.00 2.32
108 109 7.200455 ACACCACTGTAGACTTTAAAAATTGC 58.800 34.615 0.00 0.00 0.00 3.56
166 167 3.065786 GCAATGGCATTTCTCAGAATCGA 59.934 43.478 10.65 0.00 40.72 3.59
262 5463 7.613022 TGCCAATAAAAATAAAAATGCCATCCA 59.387 29.630 0.00 0.00 0.00 3.41
370 5571 4.744795 ACCGCCATGCCATTAAAAATAA 57.255 36.364 0.00 0.00 0.00 1.40
477 5678 8.752005 ATTAATAATAATGACCGCCATGCTAT 57.248 30.769 0.00 0.00 35.24 2.97
645 5924 6.317642 TCTCTCTCTCTAGAATACACACAAGC 59.682 42.308 0.00 0.00 0.00 4.01
646 5925 5.946377 TCTCTCTCTAGAATACACACAAGCA 59.054 40.000 0.00 0.00 0.00 3.91
647 5926 5.955488 TCTCTCTAGAATACACACAAGCAC 58.045 41.667 0.00 0.00 0.00 4.40
648 5927 4.733850 TCTCTAGAATACACACAAGCACG 58.266 43.478 0.00 0.00 0.00 5.34
649 5928 4.217767 TCTCTAGAATACACACAAGCACGT 59.782 41.667 0.00 0.00 0.00 4.49
657 5936 6.887376 ATACACACAAGCACGTCTATAAAG 57.113 37.500 0.00 0.00 0.00 1.85
684 5963 2.240493 AAACCTGTCCACAAGAGTCG 57.760 50.000 0.00 0.00 0.00 4.18
696 5975 1.798813 CAAGAGTCGGCAACTACAACC 59.201 52.381 0.00 0.00 38.74 3.77
703 5982 3.124636 GTCGGCAACTACAACCATACAAG 59.875 47.826 0.00 0.00 31.34 3.16
704 5983 3.007074 TCGGCAACTACAACCATACAAGA 59.993 43.478 0.00 0.00 0.00 3.02
711 5990 1.623811 ACAACCATACAAGACTCGCCT 59.376 47.619 0.00 0.00 0.00 5.52
713 5992 3.119101 ACAACCATACAAGACTCGCCTAG 60.119 47.826 0.00 0.00 0.00 3.02
731 6010 5.350365 CGCCTAGCTTACAACAATTGACTAA 59.650 40.000 13.59 3.62 0.00 2.24
733 6012 6.594159 GCCTAGCTTACAACAATTGACTAAGA 59.406 38.462 13.59 0.00 0.00 2.10
734 6013 7.201565 GCCTAGCTTACAACAATTGACTAAGAG 60.202 40.741 13.59 7.54 0.00 2.85
735 6014 8.035394 CCTAGCTTACAACAATTGACTAAGAGA 58.965 37.037 13.59 4.68 0.00 3.10
736 6015 7.897575 AGCTTACAACAATTGACTAAGAGAG 57.102 36.000 13.59 1.11 0.00 3.20
737 6016 7.445945 AGCTTACAACAATTGACTAAGAGAGT 58.554 34.615 13.59 0.00 42.90 3.24
798 6079 1.383523 GGAAGCCGGAAGAAAGGATG 58.616 55.000 5.05 0.00 0.00 3.51
800 6081 2.422093 GGAAGCCGGAAGAAAGGATGAT 60.422 50.000 5.05 0.00 0.00 2.45
801 6082 3.181454 GGAAGCCGGAAGAAAGGATGATA 60.181 47.826 5.05 0.00 0.00 2.15
802 6083 4.505742 GGAAGCCGGAAGAAAGGATGATAT 60.506 45.833 5.05 0.00 0.00 1.63
894 6175 6.904463 ACGGGTGTTGTTAAGGATTAATTT 57.096 33.333 0.00 0.00 43.30 1.82
896 6177 8.406730 ACGGGTGTTGTTAAGGATTAATTTAA 57.593 30.769 0.00 0.00 43.30 1.52
921 6202 7.962964 TCCTAATAATCAATGCTTAAGTCGG 57.037 36.000 4.02 0.00 0.00 4.79
922 6203 7.506114 TCCTAATAATCAATGCTTAAGTCGGT 58.494 34.615 4.02 0.00 0.00 4.69
923 6204 7.990886 TCCTAATAATCAATGCTTAAGTCGGTT 59.009 33.333 4.02 0.00 0.00 4.44
924 6205 8.070171 CCTAATAATCAATGCTTAAGTCGGTTG 58.930 37.037 4.02 4.94 0.00 3.77
926 6207 5.705609 AATCAATGCTTAAGTCGGTTGTT 57.294 34.783 4.02 0.00 0.00 2.83
927 6208 6.811253 AATCAATGCTTAAGTCGGTTGTTA 57.189 33.333 4.02 0.00 0.00 2.41
930 6211 5.761234 TCAATGCTTAAGTCGGTTGTTAAGT 59.239 36.000 4.02 0.00 38.16 2.24
931 6212 5.857822 ATGCTTAAGTCGGTTGTTAAGTC 57.142 39.130 4.02 0.00 38.16 3.01
933 6214 3.122445 GCTTAAGTCGGTTGTTAAGTCGG 59.878 47.826 4.02 0.00 38.16 4.79
935 6216 2.896745 AGTCGGTTGTTAAGTCGGTT 57.103 45.000 0.00 0.00 0.00 4.44
936 6217 3.183793 AGTCGGTTGTTAAGTCGGTTT 57.816 42.857 0.00 0.00 0.00 3.27
938 6219 4.301628 AGTCGGTTGTTAAGTCGGTTTAG 58.698 43.478 0.00 0.00 0.00 1.85
940 6221 4.507756 GTCGGTTGTTAAGTCGGTTTAGTT 59.492 41.667 0.00 0.00 0.00 2.24
941 6222 5.689961 GTCGGTTGTTAAGTCGGTTTAGTTA 59.310 40.000 0.00 0.00 0.00 2.24
942 6223 5.689961 TCGGTTGTTAAGTCGGTTTAGTTAC 59.310 40.000 0.00 0.00 0.00 2.50
956 6237 7.008440 GGTTTAGTTACCGACATTGTAATCC 57.992 40.000 0.00 0.00 31.41 3.01
958 6239 7.981225 GGTTTAGTTACCGACATTGTAATCCTA 59.019 37.037 0.00 0.00 31.41 2.94
959 6240 9.369904 GTTTAGTTACCGACATTGTAATCCTAA 57.630 33.333 0.00 0.00 31.41 2.69
960 6241 8.931385 TTAGTTACCGACATTGTAATCCTAAC 57.069 34.615 0.00 0.00 31.41 2.34
961 6242 7.179076 AGTTACCGACATTGTAATCCTAACT 57.821 36.000 0.00 0.00 31.41 2.24
962 6243 7.039882 AGTTACCGACATTGTAATCCTAACTG 58.960 38.462 0.00 0.00 31.41 3.16
965 6246 4.442706 CGACATTGTAATCCTAACTGCCT 58.557 43.478 0.00 0.00 0.00 4.75
967 6248 5.220662 CGACATTGTAATCCTAACTGCCTTG 60.221 44.000 0.00 0.00 0.00 3.61
969 6250 6.717289 ACATTGTAATCCTAACTGCCTTGTA 58.283 36.000 0.00 0.00 0.00 2.41
971 6252 7.668052 ACATTGTAATCCTAACTGCCTTGTAAA 59.332 33.333 0.00 0.00 0.00 2.01
972 6253 7.681939 TTGTAATCCTAACTGCCTTGTAAAG 57.318 36.000 0.00 0.00 45.69 1.85
973 6254 6.775708 TGTAATCCTAACTGCCTTGTAAAGT 58.224 36.000 0.00 0.00 44.25 2.66
974 6255 6.653320 TGTAATCCTAACTGCCTTGTAAAGTG 59.347 38.462 0.00 0.00 44.25 3.16
977 6258 2.748209 AACTGCCTTGTAAAGTGGGT 57.252 45.000 0.00 0.00 44.25 4.51
979 6260 4.382386 AACTGCCTTGTAAAGTGGGTAT 57.618 40.909 0.00 0.00 44.25 2.73
985 6266 7.555195 ACTGCCTTGTAAAGTGGGTATAAATAC 59.445 37.037 0.00 0.00 44.25 1.89
999 6280 6.527423 GGTATAAATACCCGGTCTTCAATCA 58.473 40.000 7.80 0.00 45.62 2.57
1000 6281 6.993902 GGTATAAATACCCGGTCTTCAATCAA 59.006 38.462 7.80 0.00 45.62 2.57
1001 6282 7.664318 GGTATAAATACCCGGTCTTCAATCAAT 59.336 37.037 7.80 0.00 45.62 2.57
1002 6283 5.835113 AAATACCCGGTCTTCAATCAATG 57.165 39.130 0.00 0.00 0.00 2.82
1004 6285 2.991250 ACCCGGTCTTCAATCAATGAG 58.009 47.619 0.00 0.00 39.77 2.90
1005 6286 2.571653 ACCCGGTCTTCAATCAATGAGA 59.428 45.455 0.00 0.00 39.77 3.27
1007 6288 4.009675 CCCGGTCTTCAATCAATGAGAAA 58.990 43.478 0.00 0.00 39.77 2.52
1008 6289 4.142600 CCCGGTCTTCAATCAATGAGAAAC 60.143 45.833 0.00 0.00 39.77 2.78
1010 6291 4.406943 GGTCTTCAATCAATGAGAAACGC 58.593 43.478 0.00 0.00 39.77 4.84
1012 6293 5.084722 GTCTTCAATCAATGAGAAACGCTG 58.915 41.667 0.00 0.00 39.77 5.18
1014 6295 5.239306 TCTTCAATCAATGAGAAACGCTGTT 59.761 36.000 0.00 0.00 39.77 3.16
1015 6296 5.034554 TCAATCAATGAGAAACGCTGTTC 57.965 39.130 0.00 0.00 33.04 3.18
1016 6297 4.514816 TCAATCAATGAGAAACGCTGTTCA 59.485 37.500 0.00 0.00 33.04 3.18
1017 6298 5.008514 TCAATCAATGAGAAACGCTGTTCAA 59.991 36.000 0.00 0.00 33.04 2.69
1020 6301 5.451908 TCAATGAGAAACGCTGTTCAATTC 58.548 37.500 0.00 0.00 0.00 2.17
1022 6303 5.633830 ATGAGAAACGCTGTTCAATTCAT 57.366 34.783 0.00 0.00 0.00 2.57
1023 6304 5.437289 TGAGAAACGCTGTTCAATTCATT 57.563 34.783 0.00 0.00 0.00 2.57
1024 6305 5.451908 TGAGAAACGCTGTTCAATTCATTC 58.548 37.500 0.00 0.00 0.00 2.67
1025 6306 4.466828 AGAAACGCTGTTCAATTCATTCG 58.533 39.130 0.00 0.00 0.00 3.34
1026 6307 3.896648 AACGCTGTTCAATTCATTCGT 57.103 38.095 0.00 0.00 0.00 3.85
1027 6308 3.896648 ACGCTGTTCAATTCATTCGTT 57.103 38.095 0.00 0.00 0.00 3.85
1028 6309 3.810373 ACGCTGTTCAATTCATTCGTTC 58.190 40.909 0.00 0.00 0.00 3.95
1029 6310 3.163594 CGCTGTTCAATTCATTCGTTCC 58.836 45.455 0.00 0.00 0.00 3.62
1030 6311 3.120199 CGCTGTTCAATTCATTCGTTCCT 60.120 43.478 0.00 0.00 0.00 3.36
1031 6312 4.406943 GCTGTTCAATTCATTCGTTCCTC 58.593 43.478 0.00 0.00 0.00 3.71
1032 6313 4.154918 GCTGTTCAATTCATTCGTTCCTCT 59.845 41.667 0.00 0.00 0.00 3.69
1033 6314 5.672321 GCTGTTCAATTCATTCGTTCCTCTC 60.672 44.000 0.00 0.00 0.00 3.20
1035 6316 5.639506 TGTTCAATTCATTCGTTCCTCTCTC 59.360 40.000 0.00 0.00 0.00 3.20
1036 6317 5.667539 TCAATTCATTCGTTCCTCTCTCT 57.332 39.130 0.00 0.00 0.00 3.10
1037 6318 6.042638 TCAATTCATTCGTTCCTCTCTCTT 57.957 37.500 0.00 0.00 0.00 2.85
1038 6319 6.467677 TCAATTCATTCGTTCCTCTCTCTTT 58.532 36.000 0.00 0.00 0.00 2.52
1040 6321 7.445402 TCAATTCATTCGTTCCTCTCTCTTTTT 59.555 33.333 0.00 0.00 0.00 1.94
1042 6323 5.238583 TCATTCGTTCCTCTCTCTTTTTCC 58.761 41.667 0.00 0.00 0.00 3.13
1043 6324 4.957684 TTCGTTCCTCTCTCTTTTTCCT 57.042 40.909 0.00 0.00 0.00 3.36
1044 6325 4.522722 TCGTTCCTCTCTCTTTTTCCTC 57.477 45.455 0.00 0.00 0.00 3.71
1045 6326 4.153411 TCGTTCCTCTCTCTTTTTCCTCT 58.847 43.478 0.00 0.00 0.00 3.69
1046 6327 4.589374 TCGTTCCTCTCTCTTTTTCCTCTT 59.411 41.667 0.00 0.00 0.00 2.85
1047 6328 5.070580 TCGTTCCTCTCTCTTTTTCCTCTTT 59.929 40.000 0.00 0.00 0.00 2.52
1048 6329 5.178438 CGTTCCTCTCTCTTTTTCCTCTTTG 59.822 44.000 0.00 0.00 0.00 2.77
1049 6330 5.234466 TCCTCTCTCTTTTTCCTCTTTGG 57.766 43.478 0.00 0.00 37.10 3.28
1053 6334 6.001449 TCTCTCTTTTTCCTCTTTGGTGAA 57.999 37.500 0.00 0.00 37.07 3.18
1054 6335 5.823045 TCTCTCTTTTTCCTCTTTGGTGAAC 59.177 40.000 0.00 0.00 37.07 3.18
1055 6336 4.887655 TCTCTTTTTCCTCTTTGGTGAACC 59.112 41.667 0.00 0.00 37.07 3.62
1056 6337 4.605183 TCTTTTTCCTCTTTGGTGAACCA 58.395 39.130 0.00 0.00 45.94 3.67
1064 6345 2.592864 TGGTGAACCAGCCACGTT 59.407 55.556 0.00 0.00 42.01 3.99
1065 6346 1.525077 TGGTGAACCAGCCACGTTC 60.525 57.895 0.00 2.11 42.01 3.95
1066 6347 2.258726 GGTGAACCAGCCACGTTCC 61.259 63.158 5.89 0.00 39.10 3.62
1067 6348 1.525077 GTGAACCAGCCACGTTCCA 60.525 57.895 5.89 0.00 39.10 3.53
1068 6349 1.227823 TGAACCAGCCACGTTCCAG 60.228 57.895 5.89 0.00 39.10 3.86
1069 6350 1.227853 GAACCAGCCACGTTCCAGT 60.228 57.895 0.00 0.00 34.75 4.00
1071 6352 0.818040 AACCAGCCACGTTCCAGTTC 60.818 55.000 0.00 0.00 0.00 3.01
1072 6353 1.966451 CCAGCCACGTTCCAGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
1073 6354 1.227823 CAGCCACGTTCCAGTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
1074 6355 1.071471 AGCCACGTTCCAGTTCCAG 59.929 57.895 0.00 0.00 0.00 3.86
1075 6356 2.617274 GCCACGTTCCAGTTCCAGC 61.617 63.158 0.00 0.00 0.00 4.85
1076 6357 1.966451 CCACGTTCCAGTTCCAGCC 60.966 63.158 0.00 0.00 0.00 4.85
1114 6518 5.011943 CCCAATCCAAATGGTTCTTCTCAAA 59.988 40.000 0.00 0.00 36.14 2.69
1533 6940 3.204827 GAGTACGGGGTCGCGCTA 61.205 66.667 5.56 0.00 40.63 4.26
1598 7005 1.197036 GCTCTGCTTTCGGTTGGTTAC 59.803 52.381 0.00 0.00 0.00 2.50
1611 7018 2.148916 TGGTTACTGTTCTCTGTGCG 57.851 50.000 0.00 0.00 0.00 5.34
1612 7019 1.411246 TGGTTACTGTTCTCTGTGCGT 59.589 47.619 0.00 0.00 0.00 5.24
1615 7022 2.985139 GTTACTGTTCTCTGTGCGTACC 59.015 50.000 0.00 0.00 0.00 3.34
1621 7028 2.049526 TCTGTGCGTACCAGTGCG 60.050 61.111 0.00 3.79 41.58 5.34
1804 7211 1.276989 CCGACCCTGGTTAGTTGCTTA 59.723 52.381 0.00 0.00 0.00 3.09
1827 7240 2.380932 TCACTCACCCCTACTGGTCTAA 59.619 50.000 0.00 0.00 36.12 2.10
1830 7243 4.031611 ACTCACCCCTACTGGTCTAAATC 58.968 47.826 0.00 0.00 36.12 2.17
1831 7244 3.028850 TCACCCCTACTGGTCTAAATCG 58.971 50.000 0.00 0.00 36.12 3.34
1836 7249 5.664457 ACCCCTACTGGTCTAAATCGTTTAT 59.336 40.000 0.00 0.00 31.15 1.40
1838 7251 6.407752 CCCCTACTGGTCTAAATCGTTTATGT 60.408 42.308 0.00 0.00 0.00 2.29
1839 7252 6.700520 CCCTACTGGTCTAAATCGTTTATGTC 59.299 42.308 0.00 0.00 0.00 3.06
1879 7297 7.324935 TCAGTTAGTTACCGCTATGATTGAAA 58.675 34.615 0.00 0.00 0.00 2.69
1922 7360 9.473640 GCTGTAGTTATAGTTATAGGGAAACAC 57.526 37.037 0.00 0.00 0.00 3.32
1981 7419 3.217626 GAATGGTGAAGCTATCTTGGGG 58.782 50.000 0.00 0.00 31.48 4.96
2021 7466 3.669251 ACAAACTCCTAGCTCAGTGTC 57.331 47.619 0.00 0.00 0.00 3.67
2240 7686 3.057019 TGAGAAACGATATACATGCGGC 58.943 45.455 0.00 0.00 0.00 6.53
2284 7734 4.933400 GTGTTTAAGCCTCGAAATACCAGA 59.067 41.667 0.00 0.00 0.00 3.86
2289 7739 3.600388 AGCCTCGAAATACCAGAAACAG 58.400 45.455 0.00 0.00 0.00 3.16
2383 7833 0.907704 TCCTGTTACATGCGACCCCT 60.908 55.000 0.00 0.00 0.00 4.79
2544 7995 1.130373 CTTGTGCACGCCGATAACAAT 59.870 47.619 13.13 0.00 30.90 2.71
2573 8024 3.709653 ACTCAGACACTACTTGAAACCCA 59.290 43.478 0.00 0.00 0.00 4.51
2720 8173 9.654663 GGCTTTTCTACTCTAGTGAAATCTTTA 57.345 33.333 0.00 0.00 30.92 1.85
3043 8496 6.326323 TGAATGCATGGAGTAAGGTATACTCA 59.674 38.462 15.31 0.00 44.18 3.41
3373 8826 9.994432 CATCGAGATTAATTAAGCAAGAAAACT 57.006 29.630 15.37 0.00 0.00 2.66
3585 9048 4.156622 CTGCTGTGCGTCATGCCG 62.157 66.667 0.00 0.00 45.60 5.69
3593 9056 0.040514 TGCGTCATGCCGAAAGTTTG 60.041 50.000 0.00 0.00 45.60 2.93
3604 9067 3.059461 GCCGAAAGTTTGTACATCGAACA 60.059 43.478 15.50 0.00 41.54 3.18
3787 9250 5.344207 CTATTGTTACCGAAATAGCTGGC 57.656 43.478 0.00 0.00 31.54 4.85
3890 9353 6.980397 AGAAACTGATGACATTGTGGAAAAAC 59.020 34.615 0.00 0.00 0.00 2.43
4206 9669 6.939627 TGACACTAAACTTATCAAACGTGTG 58.060 36.000 0.00 0.00 34.84 3.82
4216 9679 7.466805 ACTTATCAAACGTGTGATGATTGATG 58.533 34.615 27.96 13.70 40.07 3.07
4243 9706 5.712152 ACCATCAGTTTCATTTTCTCACC 57.288 39.130 0.00 0.00 0.00 4.02
4252 9715 8.330302 CAGTTTCATTTTCTCACCAATTTTGTC 58.670 33.333 0.00 0.00 0.00 3.18
4271 9734 2.799412 GTCGATGATGTCTGATTGCCTC 59.201 50.000 0.00 0.00 0.00 4.70
4272 9735 2.431782 TCGATGATGTCTGATTGCCTCA 59.568 45.455 0.00 0.00 0.00 3.86
4279 9742 2.229543 TGTCTGATTGCCTCATTGTTGC 59.770 45.455 0.00 0.00 32.10 4.17
4287 9750 1.730064 GCCTCATTGTTGCTTTGCATG 59.270 47.619 0.00 0.00 38.76 4.06
4288 9751 1.730064 CCTCATTGTTGCTTTGCATGC 59.270 47.619 11.82 11.82 38.76 4.06
4289 9752 1.730064 CTCATTGTTGCTTTGCATGCC 59.270 47.619 16.68 0.00 38.76 4.40
4290 9753 1.345089 TCATTGTTGCTTTGCATGCCT 59.655 42.857 16.68 0.00 38.76 4.75
4291 9754 2.147958 CATTGTTGCTTTGCATGCCTT 58.852 42.857 16.68 0.00 38.76 4.35
4292 9755 1.584175 TTGTTGCTTTGCATGCCTTG 58.416 45.000 16.68 5.89 38.76 3.61
4293 9756 0.464870 TGTTGCTTTGCATGCCTTGT 59.535 45.000 16.68 0.00 38.76 3.16
4294 9757 1.134461 TGTTGCTTTGCATGCCTTGTT 60.134 42.857 16.68 0.00 38.76 2.83
4295 9758 1.528161 GTTGCTTTGCATGCCTTGTTC 59.472 47.619 16.68 0.00 38.76 3.18
4296 9759 0.751452 TGCTTTGCATGCCTTGTTCA 59.249 45.000 16.68 2.82 31.71 3.18
4297 9760 1.269883 TGCTTTGCATGCCTTGTTCAG 60.270 47.619 16.68 1.58 31.71 3.02
4298 9761 1.269936 GCTTTGCATGCCTTGTTCAGT 60.270 47.619 16.68 0.00 0.00 3.41
4299 9762 2.030007 GCTTTGCATGCCTTGTTCAGTA 60.030 45.455 16.68 0.00 0.00 2.74
4300 9763 3.829948 CTTTGCATGCCTTGTTCAGTAG 58.170 45.455 16.68 0.00 0.00 2.57
4301 9764 2.566833 TGCATGCCTTGTTCAGTAGT 57.433 45.000 16.68 0.00 0.00 2.73
4302 9765 2.153645 TGCATGCCTTGTTCAGTAGTG 58.846 47.619 16.68 0.00 0.00 2.74
4303 9766 1.135575 GCATGCCTTGTTCAGTAGTGC 60.136 52.381 6.36 0.00 0.00 4.40
4304 9767 2.430465 CATGCCTTGTTCAGTAGTGCT 58.570 47.619 0.00 0.00 0.00 4.40
4305 9768 2.169832 TGCCTTGTTCAGTAGTGCTC 57.830 50.000 0.00 0.00 0.00 4.26
4306 9769 1.071605 GCCTTGTTCAGTAGTGCTCG 58.928 55.000 0.00 0.00 0.00 5.03
4307 9770 1.605712 GCCTTGTTCAGTAGTGCTCGT 60.606 52.381 0.00 0.00 0.00 4.18
4308 9771 2.755650 CCTTGTTCAGTAGTGCTCGTT 58.244 47.619 0.00 0.00 0.00 3.85
4309 9772 2.476619 CCTTGTTCAGTAGTGCTCGTTG 59.523 50.000 0.00 0.00 0.00 4.10
4310 9773 1.497991 TGTTCAGTAGTGCTCGTTGC 58.502 50.000 0.00 0.00 43.25 4.17
4311 9774 0.790814 GTTCAGTAGTGCTCGTTGCC 59.209 55.000 0.00 0.00 42.00 4.52
4312 9775 0.391228 TTCAGTAGTGCTCGTTGCCA 59.609 50.000 0.00 0.00 42.00 4.92
4313 9776 0.319555 TCAGTAGTGCTCGTTGCCAC 60.320 55.000 0.00 0.00 42.00 5.01
4314 9777 0.599991 CAGTAGTGCTCGTTGCCACA 60.600 55.000 0.00 0.00 42.00 4.17
4315 9778 0.319900 AGTAGTGCTCGTTGCCACAG 60.320 55.000 0.00 0.00 42.00 3.66
4352 9816 3.729108 TCCTCTCTGTCCCTTCATCATT 58.271 45.455 0.00 0.00 0.00 2.57
4361 9825 8.737168 TCTGTCCCTTCATCATTTGTAAATAG 57.263 34.615 0.00 0.00 0.00 1.73
4408 9872 8.863086 TCTTTGTCCTTTTTGATGATCAGAAAT 58.137 29.630 10.96 0.00 31.39 2.17
4420 9884 5.682234 TGATCAGAAATGCTCAGGTTCTA 57.318 39.130 0.00 0.00 30.50 2.10
4421 9885 5.423015 TGATCAGAAATGCTCAGGTTCTAC 58.577 41.667 0.00 0.00 30.50 2.59
4425 9889 4.629200 CAGAAATGCTCAGGTTCTACAGTC 59.371 45.833 0.00 0.00 30.50 3.51
4471 9935 4.218417 AGGTAGATTGCACACCATTTGTTC 59.782 41.667 8.27 0.00 35.67 3.18
4488 9952 4.771114 TGTTCCAGGAGAAGAGTTTGAA 57.229 40.909 0.00 0.00 34.29 2.69
4581 10045 4.484912 AGAGGGCTGTAATAGAGGTTAGG 58.515 47.826 0.00 0.00 0.00 2.69
4602 10066 3.108376 GGGTCTTGAGTCCATACCTTCT 58.892 50.000 0.00 0.00 32.34 2.85
4604 10068 3.769844 GGTCTTGAGTCCATACCTTCTGA 59.230 47.826 0.00 0.00 0.00 3.27
4635 10099 3.817084 GGTGGACTGTAAACCAGGTAAAC 59.183 47.826 0.00 0.00 46.06 2.01
4647 10111 4.266714 ACCAGGTAAACATTTCCGTATGG 58.733 43.478 0.00 0.00 0.00 2.74
4660 10124 4.054780 TCCGTATGGCATCAGTAGAAAC 57.945 45.455 1.65 0.00 34.14 2.78
4664 10128 1.367346 TGGCATCAGTAGAAACCCCA 58.633 50.000 0.00 0.00 0.00 4.96
4669 10133 4.381411 GCATCAGTAGAAACCCCAGTATC 58.619 47.826 0.00 0.00 0.00 2.24
4670 10134 4.101741 GCATCAGTAGAAACCCCAGTATCT 59.898 45.833 0.00 0.00 0.00 1.98
4671 10135 5.605534 CATCAGTAGAAACCCCAGTATCTG 58.394 45.833 0.00 0.00 0.00 2.90
4678 10152 4.162509 AGAAACCCCAGTATCTGCTCTTAC 59.837 45.833 0.00 0.00 0.00 2.34
4703 10177 5.574891 TTGTTGCTTCAGTTGTTACATGT 57.425 34.783 2.69 2.69 0.00 3.21
4710 10184 8.840833 TGCTTCAGTTGTTACATGTAAGATTA 57.159 30.769 18.56 0.81 0.00 1.75
4765 10239 2.490903 AGACAATTGGAACAGCTCATGC 59.509 45.455 10.83 0.00 42.39 4.06
4967 10441 2.544721 TCAGAATCTTGCTGGTCCTCT 58.455 47.619 0.00 0.00 34.20 3.69
4998 10472 4.442073 CGACAATTTTGACTTTTGAGCAGG 59.558 41.667 0.00 0.00 0.00 4.85
5000 10474 2.888834 TTTTGACTTTTGAGCAGGGC 57.111 45.000 0.00 0.00 0.00 5.19
5016 10490 3.187700 CAGGGCAGTAACATAGAACGAC 58.812 50.000 0.00 0.00 0.00 4.34
5037 10513 0.750850 TGAACGCCCAGTAGCTATCC 59.249 55.000 0.00 0.00 0.00 2.59
5042 10518 1.412710 CGCCCAGTAGCTATCCAAAGA 59.587 52.381 0.00 0.00 0.00 2.52
5043 10519 2.158957 CGCCCAGTAGCTATCCAAAGAA 60.159 50.000 0.00 0.00 0.00 2.52
5044 10520 3.495100 CGCCCAGTAGCTATCCAAAGAAT 60.495 47.826 0.00 0.00 0.00 2.40
5074 10550 7.692172 AATGAAATTGAACCCATTTTCTGGAT 58.308 30.769 0.00 0.00 41.02 3.41
5095 10571 7.825709 TGGATGGGATCAAAGATTTATAGGTT 58.174 34.615 0.00 0.00 0.00 3.50
5162 10638 6.208599 TGGACAATCTTCCAAATTTGTACTCC 59.791 38.462 16.73 8.91 43.04 3.85
5235 10711 7.914871 TGTATTTTTAGATCATGCACAAATCGG 59.085 33.333 0.00 0.00 0.00 4.18
5236 10712 6.507958 TTTTTAGATCATGCACAAATCGGA 57.492 33.333 0.00 0.00 0.00 4.55
5237 10713 6.507958 TTTTAGATCATGCACAAATCGGAA 57.492 33.333 0.00 0.00 0.00 4.30
5238 10714 5.739752 TTAGATCATGCACAAATCGGAAG 57.260 39.130 0.00 0.00 0.00 3.46
5276 10756 4.789012 ACGATCATGCAAAAACAGGAAT 57.211 36.364 0.00 0.00 33.54 3.01
5283 10764 7.230849 TCATGCAAAAACAGGAATAATGACT 57.769 32.000 0.00 0.00 0.00 3.41
5284 10765 7.092079 TCATGCAAAAACAGGAATAATGACTG 58.908 34.615 0.00 0.00 38.19 3.51
5447 10934 0.958091 CATTTGCCGGGTTCTGTTGA 59.042 50.000 2.18 0.00 0.00 3.18
5487 10978 8.637281 TCAACCGGTTTAATTTTCTTTTCTTC 57.363 30.769 19.55 0.00 0.00 2.87
5491 10982 9.661563 ACCGGTTTAATTTTCTTTTCTTCTTTT 57.338 25.926 0.00 0.00 0.00 2.27
5508 10999 6.264518 TCTTCTTTTATCCTGTTTTGTCACCC 59.735 38.462 0.00 0.00 0.00 4.61
5550 11042 5.509832 TTCCCCTCTTTTTAAGTACTCCC 57.490 43.478 0.00 0.00 0.00 4.30
5551 11043 4.771338 TCCCCTCTTTTTAAGTACTCCCT 58.229 43.478 0.00 0.00 0.00 4.20
5553 11045 4.080469 CCCCTCTTTTTAAGTACTCCCTCC 60.080 50.000 0.00 0.00 0.00 4.30
5554 11046 4.080469 CCCTCTTTTTAAGTACTCCCTCCC 60.080 50.000 0.00 0.00 0.00 4.30
5571 11063 7.346436 ACTCCCTCCCGTAAAGAAATATAAGAA 59.654 37.037 0.00 0.00 0.00 2.52
5572 11064 7.503549 TCCCTCCCGTAAAGAAATATAAGAAC 58.496 38.462 0.00 0.00 0.00 3.01
5573 11065 6.423001 CCCTCCCGTAAAGAAATATAAGAACG 59.577 42.308 0.00 0.00 0.00 3.95
5574 11066 6.982724 CCTCCCGTAAAGAAATATAAGAACGT 59.017 38.462 0.00 0.00 0.00 3.99
5608 11100 9.303537 ACTAAAATAGTGATCTAAACGCTCTTC 57.696 33.333 0.00 0.00 37.69 2.87
5609 11101 9.522804 CTAAAATAGTGATCTAAACGCTCTTCT 57.477 33.333 0.00 0.00 0.00 2.85
5610 11102 8.779354 AAAATAGTGATCTAAACGCTCTTCTT 57.221 30.769 0.00 0.00 0.00 2.52
5611 11103 8.779354 AAATAGTGATCTAAACGCTCTTCTTT 57.221 30.769 0.00 0.00 0.00 2.52
5612 11104 7.995463 ATAGTGATCTAAACGCTCTTCTTTC 57.005 36.000 0.00 0.00 0.00 2.62
5613 11105 6.031751 AGTGATCTAAACGCTCTTCTTTCT 57.968 37.500 0.00 0.00 0.00 2.52
5614 11106 6.096695 AGTGATCTAAACGCTCTTCTTTCTC 58.903 40.000 0.00 0.00 0.00 2.87
5615 11107 6.071616 AGTGATCTAAACGCTCTTCTTTCTCT 60.072 38.462 0.00 0.00 0.00 3.10
5616 11108 6.588373 GTGATCTAAACGCTCTTCTTTCTCTT 59.412 38.462 0.00 0.00 0.00 2.85
5617 11109 7.117092 GTGATCTAAACGCTCTTCTTTCTCTTT 59.883 37.037 0.00 0.00 0.00 2.52
5618 11110 8.304596 TGATCTAAACGCTCTTCTTTCTCTTTA 58.695 33.333 0.00 0.00 0.00 1.85
5619 11111 9.308318 GATCTAAACGCTCTTCTTTCTCTTTAT 57.692 33.333 0.00 0.00 0.00 1.40
5639 11131 8.304596 TCTTTATAGCGGGAGTACTTCATAATG 58.695 37.037 2.92 1.89 0.00 1.90
5705 11197 7.459795 TTGCAGGATCACAAAACACATAATA 57.540 32.000 0.00 0.00 0.00 0.98
5706 11198 7.459795 TGCAGGATCACAAAACACATAATAA 57.540 32.000 0.00 0.00 0.00 1.40
5708 11200 8.363390 TGCAGGATCACAAAACACATAATAAAA 58.637 29.630 0.00 0.00 0.00 1.52
5802 11300 9.905171 ACAAACAAAAACAAAAGTGCATAAAAT 57.095 22.222 0.00 0.00 0.00 1.82
5825 11323 6.544928 TGTGAATAGATAGCCTCTCAAACA 57.455 37.500 0.00 0.00 35.28 2.83
5848 11346 2.332312 CTGGTTCACCCACCCGTTGA 62.332 60.000 0.00 0.00 38.72 3.18
5875 11373 3.773667 TGCCAGACAATCTCTCTTCATCT 59.226 43.478 0.00 0.00 0.00 2.90
5878 11376 5.626347 GCCAGACAATCTCTCTTCATCTTCA 60.626 44.000 0.00 0.00 0.00 3.02
5927 11425 7.249186 TGAGAAAATTTTCTGCAATTTGGTG 57.751 32.000 32.67 0.00 46.84 4.17
5936 11434 3.582208 TCTGCAATTTGGTGCCCTAAAAT 59.418 39.130 0.00 0.00 44.26 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.947244 ATGGCATTTCTCGGAATCGC 59.053 50.000 0.00 0.00 36.13 4.58
78 79 9.628746 TTTTTAAAGTCTACAGTGGTGTTTTTC 57.371 29.630 0.00 0.00 38.19 2.29
89 90 9.959749 TTTAGTGGCAATTTTTAAAGTCTACAG 57.040 29.630 0.00 0.00 0.00 2.74
129 130 6.542574 TGCCATTGCAATTTCTAAACTTTG 57.457 33.333 9.83 0.00 46.66 2.77
147 148 3.875727 CTGTCGATTCTGAGAAATGCCAT 59.124 43.478 0.00 0.00 0.00 4.40
166 167 8.462016 GTTTGATAAATGCCACTCTAATTCTGT 58.538 33.333 0.00 0.00 0.00 3.41
253 5431 7.712205 GCATTTTTCTTATTAAGTGGATGGCAT 59.288 33.333 0.00 0.00 0.00 4.40
262 5463 8.829373 AGAGGATGGCATTTTTCTTATTAAGT 57.171 30.769 0.00 0.00 0.00 2.24
326 5527 7.415206 CGGTTTTTATTACTAAGAGCATGGCTT 60.415 37.037 0.00 0.00 39.88 4.35
327 5528 6.038271 CGGTTTTTATTACTAAGAGCATGGCT 59.962 38.462 0.00 0.00 43.88 4.75
328 5529 6.199393 CGGTTTTTATTACTAAGAGCATGGC 58.801 40.000 0.00 0.00 0.00 4.40
329 5530 6.199393 GCGGTTTTTATTACTAAGAGCATGG 58.801 40.000 0.00 0.00 0.00 3.66
398 5599 6.436847 TGGCATTTTTGTTATCAAGAGGATGA 59.563 34.615 0.00 0.00 36.72 2.92
456 5657 9.845740 TTATTATAGCATGGCGGTCATTATTAT 57.154 29.630 0.00 0.00 32.92 1.28
564 5765 9.952188 GTTGAGCTTTTATGTTTAAACTTCTCT 57.048 29.630 18.72 7.16 0.00 3.10
565 5766 9.181805 GGTTGAGCTTTTATGTTTAAACTTCTC 57.818 33.333 18.72 13.84 0.00 2.87
566 5767 8.141909 GGGTTGAGCTTTTATGTTTAAACTTCT 58.858 33.333 18.72 6.09 0.00 2.85
567 5768 7.384115 GGGGTTGAGCTTTTATGTTTAAACTTC 59.616 37.037 18.72 1.59 0.00 3.01
568 5769 7.214381 GGGGTTGAGCTTTTATGTTTAAACTT 58.786 34.615 18.72 14.74 0.00 2.66
569 5770 6.239487 GGGGGTTGAGCTTTTATGTTTAAACT 60.239 38.462 18.72 7.55 0.00 2.66
570 5771 5.929992 GGGGGTTGAGCTTTTATGTTTAAAC 59.070 40.000 11.54 11.54 0.00 2.01
571 5772 6.104146 GGGGGTTGAGCTTTTATGTTTAAA 57.896 37.500 0.00 0.00 0.00 1.52
572 5773 5.731957 GGGGGTTGAGCTTTTATGTTTAA 57.268 39.130 0.00 0.00 0.00 1.52
626 5905 4.217767 ACGTGCTTGTGTGTATTCTAGAGA 59.782 41.667 0.00 0.00 0.00 3.10
627 5906 4.486090 ACGTGCTTGTGTGTATTCTAGAG 58.514 43.478 0.00 0.00 0.00 2.43
628 5907 4.217767 AGACGTGCTTGTGTGTATTCTAGA 59.782 41.667 0.00 0.00 0.00 2.43
629 5908 4.486090 AGACGTGCTTGTGTGTATTCTAG 58.514 43.478 0.00 0.00 0.00 2.43
684 5963 4.324267 AGTCTTGTATGGTTGTAGTTGCC 58.676 43.478 0.00 0.00 0.00 4.52
696 5975 3.444703 AAGCTAGGCGAGTCTTGTATG 57.555 47.619 0.00 0.00 0.00 2.39
703 5982 2.649331 TGTTGTAAGCTAGGCGAGTC 57.351 50.000 0.00 0.00 0.00 3.36
704 5983 3.611766 ATTGTTGTAAGCTAGGCGAGT 57.388 42.857 0.00 0.00 0.00 4.18
711 5990 8.585881 ACTCTCTTAGTCAATTGTTGTAAGCTA 58.414 33.333 5.13 3.04 30.33 3.32
713 5992 7.659652 ACTCTCTTAGTCAATTGTTGTAAGC 57.340 36.000 5.13 0.00 30.33 3.09
731 6010 2.252714 GTCAACCCCAAGAGACTCTCT 58.747 52.381 5.20 2.39 43.37 3.10
733 6012 1.132689 AGGTCAACCCCAAGAGACTCT 60.133 52.381 0.00 0.00 36.42 3.24
734 6013 1.353091 AGGTCAACCCCAAGAGACTC 58.647 55.000 0.00 0.00 36.42 3.36
735 6014 1.421646 CAAGGTCAACCCCAAGAGACT 59.578 52.381 0.00 0.00 36.42 3.24
736 6015 1.897560 CAAGGTCAACCCCAAGAGAC 58.102 55.000 0.00 0.00 36.42 3.36
737 6016 0.110486 GCAAGGTCAACCCCAAGAGA 59.890 55.000 0.00 0.00 36.42 3.10
738 6017 1.237285 CGCAAGGTCAACCCCAAGAG 61.237 60.000 0.00 0.00 36.42 2.85
739 6018 1.228124 CGCAAGGTCAACCCCAAGA 60.228 57.895 0.00 0.00 36.42 3.02
740 6019 2.919494 GCGCAAGGTCAACCCCAAG 61.919 63.158 0.30 0.00 36.42 3.61
741 6020 2.909965 GCGCAAGGTCAACCCCAA 60.910 61.111 0.30 0.00 36.42 4.12
896 6177 8.157476 ACCGACTTAAGCATTGATTATTAGGAT 58.843 33.333 1.29 0.00 0.00 3.24
899 6180 8.612619 ACAACCGACTTAAGCATTGATTATTAG 58.387 33.333 1.29 0.00 0.00 1.73
900 6181 8.500753 ACAACCGACTTAAGCATTGATTATTA 57.499 30.769 1.29 0.00 0.00 0.98
901 6182 7.391148 ACAACCGACTTAAGCATTGATTATT 57.609 32.000 1.29 0.00 0.00 1.40
902 6183 7.391148 AACAACCGACTTAAGCATTGATTAT 57.609 32.000 1.29 0.00 0.00 1.28
903 6184 6.811253 AACAACCGACTTAAGCATTGATTA 57.189 33.333 1.29 0.00 0.00 1.75
904 6185 5.705609 AACAACCGACTTAAGCATTGATT 57.294 34.783 1.29 0.00 0.00 2.57
905 6186 6.430000 ACTTAACAACCGACTTAAGCATTGAT 59.570 34.615 1.29 0.29 34.55 2.57
907 6188 5.997385 ACTTAACAACCGACTTAAGCATTG 58.003 37.500 1.29 4.90 34.55 2.82
909 6190 4.387862 CGACTTAACAACCGACTTAAGCAT 59.612 41.667 1.29 0.00 34.55 3.79
910 6191 3.737266 CGACTTAACAACCGACTTAAGCA 59.263 43.478 1.29 0.00 34.55 3.91
911 6192 3.122445 CCGACTTAACAACCGACTTAAGC 59.878 47.826 1.29 0.00 34.55 3.09
912 6193 4.301628 ACCGACTTAACAACCGACTTAAG 58.698 43.478 0.00 0.00 36.45 1.85
913 6194 4.320608 ACCGACTTAACAACCGACTTAA 57.679 40.909 0.00 0.00 0.00 1.85
914 6195 4.320608 AACCGACTTAACAACCGACTTA 57.679 40.909 0.00 0.00 0.00 2.24
915 6196 2.896745 ACCGACTTAACAACCGACTT 57.103 45.000 0.00 0.00 0.00 3.01
917 6198 4.051237 ACTAAACCGACTTAACAACCGAC 58.949 43.478 0.00 0.00 0.00 4.79
918 6199 4.320608 ACTAAACCGACTTAACAACCGA 57.679 40.909 0.00 0.00 0.00 4.69
919 6200 5.107491 GGTAACTAAACCGACTTAACAACCG 60.107 44.000 0.00 0.00 0.00 4.44
920 6201 6.228273 GGTAACTAAACCGACTTAACAACC 57.772 41.667 0.00 0.00 0.00 3.77
933 6214 7.838771 AGGATTACAATGTCGGTAACTAAAC 57.161 36.000 0.00 0.00 33.89 2.01
935 6216 8.752187 AGTTAGGATTACAATGTCGGTAACTAA 58.248 33.333 0.00 0.00 33.89 2.24
936 6217 8.192774 CAGTTAGGATTACAATGTCGGTAACTA 58.807 37.037 0.00 0.00 33.89 2.24
938 6219 6.238022 GCAGTTAGGATTACAATGTCGGTAAC 60.238 42.308 0.00 0.00 33.89 2.50
940 6221 5.353938 GCAGTTAGGATTACAATGTCGGTA 58.646 41.667 0.00 0.00 0.00 4.02
941 6222 4.189231 GCAGTTAGGATTACAATGTCGGT 58.811 43.478 0.00 0.00 0.00 4.69
942 6223 3.560068 GGCAGTTAGGATTACAATGTCGG 59.440 47.826 0.00 0.00 0.00 4.79
944 6225 5.648092 ACAAGGCAGTTAGGATTACAATGTC 59.352 40.000 0.00 0.00 0.00 3.06
946 6227 7.624360 TTACAAGGCAGTTAGGATTACAATG 57.376 36.000 0.00 0.00 0.00 2.82
947 6228 7.888546 ACTTTACAAGGCAGTTAGGATTACAAT 59.111 33.333 0.00 0.00 0.00 2.71
950 6231 6.093633 CCACTTTACAAGGCAGTTAGGATTAC 59.906 42.308 0.00 0.00 0.00 1.89
951 6232 6.177610 CCACTTTACAAGGCAGTTAGGATTA 58.822 40.000 0.00 0.00 0.00 1.75
952 6233 5.010282 CCACTTTACAAGGCAGTTAGGATT 58.990 41.667 0.00 0.00 0.00 3.01
953 6234 4.567747 CCCACTTTACAAGGCAGTTAGGAT 60.568 45.833 0.00 0.00 0.00 3.24
956 6237 3.751518 ACCCACTTTACAAGGCAGTTAG 58.248 45.455 0.00 0.00 0.00 2.34
958 6239 2.748209 ACCCACTTTACAAGGCAGTT 57.252 45.000 0.00 0.00 0.00 3.16
959 6240 5.508280 TTATACCCACTTTACAAGGCAGT 57.492 39.130 0.00 0.00 0.00 4.40
960 6241 7.012989 GGTATTTATACCCACTTTACAAGGCAG 59.987 40.741 7.56 0.00 45.62 4.85
961 6242 6.829811 GGTATTTATACCCACTTTACAAGGCA 59.170 38.462 7.56 0.00 45.62 4.75
962 6243 7.268199 GGTATTTATACCCACTTTACAAGGC 57.732 40.000 7.56 0.00 45.62 4.35
977 6258 8.433599 TCATTGATTGAAGACCGGGTATTTATA 58.566 33.333 8.67 0.00 0.00 0.98
979 6260 6.654959 TCATTGATTGAAGACCGGGTATTTA 58.345 36.000 8.67 1.21 0.00 1.40
985 6266 3.266510 TCTCATTGATTGAAGACCGGG 57.733 47.619 6.32 0.00 32.78 5.73
987 6268 4.641954 CGTTTCTCATTGATTGAAGACCG 58.358 43.478 0.00 0.00 32.78 4.79
988 6269 4.154918 AGCGTTTCTCATTGATTGAAGACC 59.845 41.667 0.00 0.00 32.78 3.85
989 6270 5.084722 CAGCGTTTCTCATTGATTGAAGAC 58.915 41.667 0.00 0.00 32.78 3.01
990 6271 4.756642 ACAGCGTTTCTCATTGATTGAAGA 59.243 37.500 0.00 0.00 32.78 2.87
991 6272 5.039480 ACAGCGTTTCTCATTGATTGAAG 57.961 39.130 0.00 0.00 32.78 3.02
994 6275 4.786507 TGAACAGCGTTTCTCATTGATTG 58.213 39.130 2.56 0.00 0.00 2.67
996 6277 5.633830 ATTGAACAGCGTTTCTCATTGAT 57.366 34.783 2.56 0.00 0.00 2.57
997 6278 5.008514 TGAATTGAACAGCGTTTCTCATTGA 59.991 36.000 2.56 0.00 0.00 2.57
998 6279 5.214417 TGAATTGAACAGCGTTTCTCATTG 58.786 37.500 2.56 0.00 0.00 2.82
999 6280 5.437289 TGAATTGAACAGCGTTTCTCATT 57.563 34.783 2.56 1.63 0.00 2.57
1000 6281 5.633830 ATGAATTGAACAGCGTTTCTCAT 57.366 34.783 2.56 1.45 0.00 2.90
1001 6282 5.437289 AATGAATTGAACAGCGTTTCTCA 57.563 34.783 2.56 0.00 0.00 3.27
1002 6283 4.551126 CGAATGAATTGAACAGCGTTTCTC 59.449 41.667 2.56 0.00 0.00 2.87
1004 6285 4.219033 ACGAATGAATTGAACAGCGTTTC 58.781 39.130 0.00 0.00 31.82 2.78
1005 6286 4.223320 ACGAATGAATTGAACAGCGTTT 57.777 36.364 0.00 0.00 31.82 3.60
1007 6288 3.364964 GGAACGAATGAATTGAACAGCGT 60.365 43.478 0.00 0.00 35.16 5.07
1008 6289 3.120199 AGGAACGAATGAATTGAACAGCG 60.120 43.478 0.00 0.00 0.00 5.18
1010 6291 5.641209 AGAGAGGAACGAATGAATTGAACAG 59.359 40.000 0.00 0.00 0.00 3.16
1012 6293 5.872070 AGAGAGAGGAACGAATGAATTGAAC 59.128 40.000 0.00 0.00 0.00 3.18
1014 6295 5.667539 AGAGAGAGGAACGAATGAATTGA 57.332 39.130 0.00 0.00 0.00 2.57
1015 6296 6.734104 AAAGAGAGAGGAACGAATGAATTG 57.266 37.500 0.00 0.00 0.00 2.32
1016 6297 7.094592 GGAAAAAGAGAGAGGAACGAATGAATT 60.095 37.037 0.00 0.00 0.00 2.17
1017 6298 6.372937 GGAAAAAGAGAGAGGAACGAATGAAT 59.627 38.462 0.00 0.00 0.00 2.57
1020 6301 5.241662 AGGAAAAAGAGAGAGGAACGAATG 58.758 41.667 0.00 0.00 0.00 2.67
1022 6303 4.589374 AGAGGAAAAAGAGAGAGGAACGAA 59.411 41.667 0.00 0.00 0.00 3.85
1023 6304 4.153411 AGAGGAAAAAGAGAGAGGAACGA 58.847 43.478 0.00 0.00 0.00 3.85
1024 6305 4.529109 AGAGGAAAAAGAGAGAGGAACG 57.471 45.455 0.00 0.00 0.00 3.95
1025 6306 5.471797 CCAAAGAGGAAAAAGAGAGAGGAAC 59.528 44.000 0.00 0.00 41.22 3.62
1026 6307 5.132816 ACCAAAGAGGAAAAAGAGAGAGGAA 59.867 40.000 0.00 0.00 41.22 3.36
1027 6308 4.660771 ACCAAAGAGGAAAAAGAGAGAGGA 59.339 41.667 0.00 0.00 41.22 3.71
1028 6309 4.759183 CACCAAAGAGGAAAAAGAGAGAGG 59.241 45.833 0.00 0.00 41.22 3.69
1029 6310 5.615289 TCACCAAAGAGGAAAAAGAGAGAG 58.385 41.667 0.00 0.00 41.22 3.20
1030 6311 5.630415 TCACCAAAGAGGAAAAAGAGAGA 57.370 39.130 0.00 0.00 41.22 3.10
1031 6312 5.009110 GGTTCACCAAAGAGGAAAAAGAGAG 59.991 44.000 0.00 0.00 41.22 3.20
1032 6313 4.887655 GGTTCACCAAAGAGGAAAAAGAGA 59.112 41.667 0.00 0.00 41.22 3.10
1033 6314 4.644685 TGGTTCACCAAAGAGGAAAAAGAG 59.355 41.667 0.00 0.00 44.35 2.85
1035 6316 4.737649 GCTGGTTCACCAAAGAGGAAAAAG 60.738 45.833 0.00 0.00 46.97 2.27
1036 6317 3.132111 GCTGGTTCACCAAAGAGGAAAAA 59.868 43.478 0.00 0.00 46.97 1.94
1037 6318 2.693074 GCTGGTTCACCAAAGAGGAAAA 59.307 45.455 0.00 0.00 46.97 2.29
1038 6319 2.306847 GCTGGTTCACCAAAGAGGAAA 58.693 47.619 0.00 0.00 46.97 3.13
1040 6321 0.110486 GGCTGGTTCACCAAAGAGGA 59.890 55.000 0.00 0.00 46.97 3.71
1042 6323 0.954452 GTGGCTGGTTCACCAAAGAG 59.046 55.000 0.00 0.00 46.97 2.85
1043 6324 0.817634 CGTGGCTGGTTCACCAAAGA 60.818 55.000 0.00 0.00 46.97 2.52
1044 6325 1.101049 ACGTGGCTGGTTCACCAAAG 61.101 55.000 0.00 0.00 46.97 2.77
1045 6326 0.681564 AACGTGGCTGGTTCACCAAA 60.682 50.000 0.00 0.00 46.97 3.28
1046 6327 1.077357 AACGTGGCTGGTTCACCAA 60.077 52.632 0.00 0.00 46.97 3.67
1047 6328 1.525077 GAACGTGGCTGGTTCACCA 60.525 57.895 13.76 0.00 45.30 4.17
1048 6329 2.258726 GGAACGTGGCTGGTTCACC 61.259 63.158 18.25 0.00 44.29 4.02
1049 6330 1.507141 CTGGAACGTGGCTGGTTCAC 61.507 60.000 18.25 10.87 44.29 3.18
1053 6334 1.227853 GAACTGGAACGTGGCTGGT 60.228 57.895 0.00 0.00 0.00 4.00
1054 6335 1.966451 GGAACTGGAACGTGGCTGG 60.966 63.158 0.00 0.00 0.00 4.85
1055 6336 1.227823 TGGAACTGGAACGTGGCTG 60.228 57.895 0.00 0.00 0.00 4.85
1056 6337 1.071471 CTGGAACTGGAACGTGGCT 59.929 57.895 0.00 0.00 0.00 4.75
1058 6339 1.966451 GGCTGGAACTGGAACGTGG 60.966 63.158 0.00 0.00 0.00 4.94
1059 6340 2.317609 CGGCTGGAACTGGAACGTG 61.318 63.158 0.00 0.00 0.00 4.49
1061 6342 3.423154 GCGGCTGGAACTGGAACG 61.423 66.667 0.00 0.00 0.00 3.95
1062 6343 2.281484 TGCGGCTGGAACTGGAAC 60.281 61.111 0.00 0.00 0.00 3.62
1063 6344 2.281484 GTGCGGCTGGAACTGGAA 60.281 61.111 0.00 0.00 0.00 3.53
1064 6345 4.680237 CGTGCGGCTGGAACTGGA 62.680 66.667 0.00 0.00 0.00 3.86
1076 6357 4.529219 TGGGATAGGCAGCGTGCG 62.529 66.667 0.00 0.00 46.21 5.34
1126 6530 3.491447 CGAGCCATTTGGATTGGGATTTC 60.491 47.826 0.00 0.00 37.39 2.17
1157 6561 1.962321 GAGAAAGGGGAGGAGGCGAC 61.962 65.000 0.00 0.00 0.00 5.19
1533 6940 4.779733 ACGCCCCCATCTCCGTCT 62.780 66.667 0.00 0.00 0.00 4.18
1598 7005 1.000163 ACTGGTACGCACAGAGAACAG 60.000 52.381 8.37 0.00 39.24 3.16
1615 7022 1.176527 AATGGGAAATCACCGCACTG 58.823 50.000 0.00 0.00 0.00 3.66
1621 7028 3.501828 GGCAAACAAAATGGGAAATCACC 59.498 43.478 0.00 0.00 0.00 4.02
1704 7111 3.320879 ATGGCACTGGAGCTCCACG 62.321 63.158 32.00 26.56 42.01 4.94
1804 7211 0.487772 ACCAGTAGGGGTGAGTGAGT 59.512 55.000 0.00 0.00 40.44 3.41
1836 7249 9.826574 ACTAACTGAACTATTTGTTTACAGACA 57.173 29.630 0.00 0.00 39.30 3.41
1866 7284 6.630443 GCTAACAGAACATTTCAATCATAGCG 59.370 38.462 0.00 0.00 0.00 4.26
1981 7419 7.441458 AGTTTGTTCAAGATAAGACACCTACAC 59.559 37.037 0.00 0.00 0.00 2.90
2021 7466 1.879380 TCACCTGAAAAGCGAACATGG 59.121 47.619 0.00 0.00 0.00 3.66
2289 7739 3.425162 ACTCCTGACCTGGAAACAATC 57.575 47.619 0.00 0.00 42.06 2.67
2383 7833 8.771920 TGCTATCTCTATTTTTCGTCTTTTGA 57.228 30.769 0.00 0.00 0.00 2.69
2544 7995 4.893524 TCAAGTAGTGTCTGAGTCAGGAAA 59.106 41.667 19.99 3.44 31.51 3.13
2720 8173 7.013083 GTGATCAATTCTATGCACCTTGATCTT 59.987 37.037 24.00 5.57 46.28 2.40
3207 8660 2.092861 TGTACCGGTTAATGACCCCATG 60.093 50.000 15.04 0.00 46.35 3.66
3585 9048 7.162062 GCGATAATGTTCGATGTACAAACTTTC 59.838 37.037 0.00 0.00 41.62 2.62
3593 9056 6.887376 ATATGGCGATAATGTTCGATGTAC 57.113 37.500 2.00 0.00 41.62 2.90
3661 9124 7.329499 CAATTGGACATGGGATTCACATAAAA 58.671 34.615 0.00 0.00 0.00 1.52
3704 9167 4.331108 TCAACTATTATGGCTGCAACACA 58.669 39.130 0.50 0.00 0.00 3.72
3949 9412 8.869897 GTCAGTTCGTATTTTGAGATTCACATA 58.130 33.333 0.00 0.00 0.00 2.29
4216 9679 6.655003 TGAGAAAATGAAACTGATGGTACCTC 59.345 38.462 14.36 8.80 0.00 3.85
4243 9706 6.020916 GCAATCAGACATCATCGACAAAATTG 60.021 38.462 0.00 0.00 0.00 2.32
4252 9715 2.830104 TGAGGCAATCAGACATCATCG 58.170 47.619 0.00 0.00 32.77 3.84
4271 9734 1.803334 AGGCATGCAAAGCAACAATG 58.197 45.000 21.36 0.00 43.62 2.82
4272 9735 2.147958 CAAGGCATGCAAAGCAACAAT 58.852 42.857 21.36 0.00 43.62 2.71
4279 9742 2.806608 ACTGAACAAGGCATGCAAAG 57.193 45.000 21.36 10.43 0.00 2.77
4287 9750 1.071605 CGAGCACTACTGAACAAGGC 58.928 55.000 0.00 0.00 0.00 4.35
4288 9751 2.440539 ACGAGCACTACTGAACAAGG 57.559 50.000 0.00 0.00 0.00 3.61
4289 9752 2.096713 GCAACGAGCACTACTGAACAAG 60.097 50.000 0.00 0.00 44.79 3.16
4290 9753 1.864711 GCAACGAGCACTACTGAACAA 59.135 47.619 0.00 0.00 44.79 2.83
4291 9754 1.497991 GCAACGAGCACTACTGAACA 58.502 50.000 0.00 0.00 44.79 3.18
4302 9765 1.569479 GAAGGTCTGTGGCAACGAGC 61.569 60.000 8.03 8.03 44.65 5.03
4303 9766 0.034059 AGAAGGTCTGTGGCAACGAG 59.966 55.000 0.00 0.00 42.51 4.18
4304 9767 0.249868 CAGAAGGTCTGTGGCAACGA 60.250 55.000 0.00 0.00 39.58 3.85
4305 9768 2.238353 CAGAAGGTCTGTGGCAACG 58.762 57.895 0.00 0.00 39.58 4.10
4314 9777 5.309282 AGAGAGGATTTCAAACAGAAGGTCT 59.691 40.000 0.00 0.00 37.57 3.85
4315 9778 5.411053 CAGAGAGGATTTCAAACAGAAGGTC 59.589 44.000 0.00 0.00 37.57 3.85
4378 9842 8.821147 TGATCATCAAAAAGGACAAAGAAATG 57.179 30.769 0.00 0.00 0.00 2.32
4379 9843 8.863086 TCTGATCATCAAAAAGGACAAAGAAAT 58.137 29.630 0.00 0.00 0.00 2.17
4408 9872 1.267121 GGGACTGTAGAACCTGAGCA 58.733 55.000 0.00 0.00 0.00 4.26
4420 9884 1.149101 ACCAGAACCATTGGGACTGT 58.851 50.000 21.32 12.09 40.11 3.55
4421 9885 2.292828 AACCAGAACCATTGGGACTG 57.707 50.000 18.30 18.30 40.11 3.51
4425 9889 4.085733 TGTTGATAACCAGAACCATTGGG 58.914 43.478 7.78 0.00 40.11 4.12
4471 9935 7.042797 TGAATTTTTCAAACTCTTCTCCTGG 57.957 36.000 0.00 0.00 36.59 4.45
4530 9994 3.820467 CAGAAATGCCTTTACCAGTGACA 59.180 43.478 0.00 0.00 0.00 3.58
4581 10045 3.108376 AGAAGGTATGGACTCAAGACCC 58.892 50.000 0.00 0.00 34.99 4.46
4602 10066 2.987547 GTCCACCGTCGTCCCTCA 60.988 66.667 0.00 0.00 0.00 3.86
4604 10068 2.416107 TACAGTCCACCGTCGTCCCT 62.416 60.000 0.00 0.00 0.00 4.20
4635 10099 4.631131 TCTACTGATGCCATACGGAAATG 58.369 43.478 0.00 0.00 0.00 2.32
4647 10111 2.789409 ACTGGGGTTTCTACTGATGC 57.211 50.000 0.00 0.00 0.00 3.91
4660 10124 4.696479 ATTGTAAGAGCAGATACTGGGG 57.304 45.455 0.00 0.00 31.21 4.96
4664 10128 6.176183 AGCAACAATTGTAAGAGCAGATACT 58.824 36.000 12.39 0.00 0.00 2.12
4669 10133 5.112220 TGAAGCAACAATTGTAAGAGCAG 57.888 39.130 12.39 0.00 0.00 4.24
4670 10134 4.580167 ACTGAAGCAACAATTGTAAGAGCA 59.420 37.500 12.39 7.27 0.00 4.26
4671 10135 5.113502 ACTGAAGCAACAATTGTAAGAGC 57.886 39.130 12.39 13.36 0.00 4.09
4678 10152 6.476380 ACATGTAACAACTGAAGCAACAATTG 59.524 34.615 3.24 3.24 33.98 2.32
4765 10239 0.875059 GTGAAAGCTTCTTGGGTCCG 59.125 55.000 0.00 0.00 0.00 4.79
4797 10271 2.289320 GGGTAGCTGCTCATTGATCGAT 60.289 50.000 4.91 0.00 0.00 3.59
4955 10429 0.322816 GAATGGCAGAGGACCAGCAA 60.323 55.000 0.00 0.00 41.46 3.91
4967 10441 2.890311 AGTCAAAATTGTCGGAATGGCA 59.110 40.909 0.00 0.00 0.00 4.92
4998 10472 3.119245 TCAGGTCGTTCTATGTTACTGCC 60.119 47.826 0.00 0.00 0.00 4.85
5000 10474 4.557690 CGTTCAGGTCGTTCTATGTTACTG 59.442 45.833 0.00 0.00 0.00 2.74
5016 10490 0.753262 ATAGCTACTGGGCGTTCAGG 59.247 55.000 0.00 0.00 38.98 3.86
5037 10513 7.360607 GGGTTCAATTTCATTGCTCATTCTTTG 60.361 37.037 0.00 0.00 40.05 2.77
5042 10518 5.486735 TGGGTTCAATTTCATTGCTCATT 57.513 34.783 0.00 0.00 40.05 2.57
5043 10519 5.687166 ATGGGTTCAATTTCATTGCTCAT 57.313 34.783 0.00 0.00 40.05 2.90
5044 10520 5.486735 AATGGGTTCAATTTCATTGCTCA 57.513 34.783 0.00 0.00 40.05 4.26
5074 10550 6.161348 TCCCAACCTATAAATCTTTGATCCCA 59.839 38.462 0.00 0.00 0.00 4.37
5095 10571 1.977854 ACAGTGACAGCAGTAATCCCA 59.022 47.619 0.00 0.00 0.00 4.37
5128 10604 3.000727 GGAAGATTGTCCAGGTACAACG 58.999 50.000 6.61 0.00 41.89 4.10
5162 10638 2.430465 CCCAAACACATCTCAGACCTG 58.570 52.381 0.00 0.00 0.00 4.00
5235 10711 7.652105 TGATCGTAATAGGTACTTGCATTCTTC 59.348 37.037 0.00 0.00 41.75 2.87
5236 10712 7.497595 TGATCGTAATAGGTACTTGCATTCTT 58.502 34.615 0.00 0.00 41.75 2.52
5237 10713 7.050970 TGATCGTAATAGGTACTTGCATTCT 57.949 36.000 0.00 0.00 41.75 2.40
5238 10714 7.622256 GCATGATCGTAATAGGTACTTGCATTC 60.622 40.741 0.00 0.00 41.75 2.67
5243 10723 7.477144 TTTGCATGATCGTAATAGGTACTTG 57.523 36.000 0.00 0.00 41.75 3.16
5276 10756 4.684242 CACAAACACGAGCTACAGTCATTA 59.316 41.667 0.00 0.00 0.00 1.90
5283 10764 1.798223 GCATCACAAACACGAGCTACA 59.202 47.619 0.00 0.00 0.00 2.74
5284 10765 2.069273 AGCATCACAAACACGAGCTAC 58.931 47.619 0.00 0.00 0.00 3.58
5348 10833 4.764679 CAACCATGCTTTACAACTGCTA 57.235 40.909 0.00 0.00 0.00 3.49
5447 10934 4.827284 ACCGGTTGAGAAGATTGTCAAAAT 59.173 37.500 0.00 0.00 41.32 1.82
5487 10978 6.405278 AAGGGTGACAAAACAGGATAAAAG 57.595 37.500 0.00 0.00 0.00 2.27
5550 11042 7.998753 ACGTTCTTATATTTCTTTACGGGAG 57.001 36.000 0.00 0.00 32.54 4.30
5551 11043 8.776376 AAACGTTCTTATATTTCTTTACGGGA 57.224 30.769 0.00 0.00 32.54 5.14
5583 11075 9.522804 AGAAGAGCGTTTAGATCACTATTTTAG 57.477 33.333 0.00 0.00 37.82 1.85
5590 11082 6.031751 AGAAAGAAGAGCGTTTAGATCACT 57.968 37.500 0.00 0.00 37.82 3.41
5591 11083 6.096695 AGAGAAAGAAGAGCGTTTAGATCAC 58.903 40.000 0.00 0.00 37.82 3.06
5592 11084 6.274157 AGAGAAAGAAGAGCGTTTAGATCA 57.726 37.500 0.00 0.00 37.82 2.92
5593 11085 7.589574 AAAGAGAAAGAAGAGCGTTTAGATC 57.410 36.000 0.00 0.00 35.01 2.75
5598 11090 6.035112 CGCTATAAAGAGAAAGAAGAGCGTTT 59.965 38.462 4.40 0.00 43.80 3.60
5599 11091 5.517054 CGCTATAAAGAGAAAGAAGAGCGTT 59.483 40.000 4.40 0.00 43.80 4.84
5602 11094 4.747605 CCCGCTATAAAGAGAAAGAAGAGC 59.252 45.833 0.00 0.00 0.00 4.09
5603 11095 6.150396 TCCCGCTATAAAGAGAAAGAAGAG 57.850 41.667 0.00 0.00 0.00 2.85
5604 11096 5.657302 ACTCCCGCTATAAAGAGAAAGAAGA 59.343 40.000 0.00 0.00 0.00 2.87
5605 11097 5.908341 ACTCCCGCTATAAAGAGAAAGAAG 58.092 41.667 0.00 0.00 0.00 2.85
5606 11098 5.934402 ACTCCCGCTATAAAGAGAAAGAA 57.066 39.130 0.00 0.00 0.00 2.52
5607 11099 6.127793 AGTACTCCCGCTATAAAGAGAAAGA 58.872 40.000 0.00 0.00 0.00 2.52
5608 11100 6.394025 AGTACTCCCGCTATAAAGAGAAAG 57.606 41.667 0.00 0.00 0.00 2.62
5609 11101 6.379133 TGAAGTACTCCCGCTATAAAGAGAAA 59.621 38.462 0.00 0.00 0.00 2.52
5610 11102 5.889853 TGAAGTACTCCCGCTATAAAGAGAA 59.110 40.000 0.00 0.00 0.00 2.87
5611 11103 5.443283 TGAAGTACTCCCGCTATAAAGAGA 58.557 41.667 0.00 0.00 0.00 3.10
5612 11104 5.769484 TGAAGTACTCCCGCTATAAAGAG 57.231 43.478 0.00 0.00 0.00 2.85
5613 11105 7.828508 TTATGAAGTACTCCCGCTATAAAGA 57.171 36.000 0.00 0.00 0.00 2.52
5614 11106 7.545965 CCATTATGAAGTACTCCCGCTATAAAG 59.454 40.741 0.00 0.00 0.00 1.85
5615 11107 7.383687 CCATTATGAAGTACTCCCGCTATAAA 58.616 38.462 0.00 0.00 0.00 1.40
5616 11108 6.573680 GCCATTATGAAGTACTCCCGCTATAA 60.574 42.308 0.00 0.00 0.00 0.98
5617 11109 5.105473 GCCATTATGAAGTACTCCCGCTATA 60.105 44.000 0.00 0.00 0.00 1.31
5618 11110 4.322801 GCCATTATGAAGTACTCCCGCTAT 60.323 45.833 0.00 0.00 0.00 2.97
5619 11111 3.006537 GCCATTATGAAGTACTCCCGCTA 59.993 47.826 0.00 0.00 0.00 4.26
5664 11156 7.759489 TCCTGCAAAGTTTTAGTTATCATGT 57.241 32.000 0.00 0.00 0.00 3.21
5673 11165 6.756074 TGTTTTGTGATCCTGCAAAGTTTTAG 59.244 34.615 0.00 0.00 36.20 1.85
5708 11200 9.912634 ATGATTGAACTTGAATTTGATACGTTT 57.087 25.926 0.00 0.00 0.00 3.60
5741 11233 8.905660 TGATTGTGTTTGGATTTGAATTTGAT 57.094 26.923 0.00 0.00 0.00 2.57
5742 11234 8.905660 ATGATTGTGTTTGGATTTGAATTTGA 57.094 26.923 0.00 0.00 0.00 2.69
5802 11300 6.544928 TGTTTGAGAGGCTATCTATTCACA 57.455 37.500 10.89 1.89 38.84 3.58
5803 11301 6.426328 CCATGTTTGAGAGGCTATCTATTCAC 59.574 42.308 10.89 0.00 38.84 3.18
5809 11307 3.205784 GCCATGTTTGAGAGGCTATCT 57.794 47.619 10.89 0.00 43.70 1.98
5844 11342 1.474077 GATTGTCTGGCACCCATCAAC 59.526 52.381 0.00 0.00 33.12 3.18
5848 11346 1.211457 GAGAGATTGTCTGGCACCCAT 59.789 52.381 0.00 0.00 34.71 4.00
5875 11373 8.189119 ACTTTTTGGGCATCTACTTTTATGAA 57.811 30.769 0.00 0.00 0.00 2.57
5878 11376 9.271828 CAAAACTTTTTGGGCATCTACTTTTAT 57.728 29.630 6.55 0.00 42.81 1.40
5907 11405 5.185668 GGCACCAAATTGCAGAAAATTTT 57.814 34.783 2.28 2.28 44.94 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.