Multiple sequence alignment - TraesCS5D01G040600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G040600 chr5D 100.000 3963 0 0 1 3963 41360863 41364825 0.000000e+00 7319.0
1 TraesCS5D01G040600 chr5D 94.675 507 24 1 1 507 121186758 121187261 0.000000e+00 784.0
2 TraesCS5D01G040600 chr5D 100.000 28 0 0 3842 3869 198955153 198955126 7.000000e-03 52.8
3 TraesCS5D01G040600 chr5A 91.463 1558 69 18 2419 3963 29681666 29683172 0.000000e+00 2082.0
4 TraesCS5D01G040600 chr5A 90.068 886 61 12 1338 2206 29680805 29681680 0.000000e+00 1123.0
5 TraesCS5D01G040600 chr5A 87.576 660 65 13 595 1240 29680097 29680753 0.000000e+00 749.0
6 TraesCS5D01G040600 chr5A 94.712 208 8 2 2206 2413 684759787 684759991 1.780000e-83 320.0
7 TraesCS5D01G040600 chr5A 94.536 183 7 2 2234 2415 546415976 546416156 3.020000e-71 279.0
8 TraesCS5D01G040600 chr5A 100.000 28 0 0 3842 3869 227710635 227710608 7.000000e-03 52.8
9 TraesCS5D01G040600 chr5B 89.893 1306 82 26 2414 3697 35530430 35531707 0.000000e+00 1635.0
10 TraesCS5D01G040600 chr5B 83.861 1673 125 70 608 2206 35528849 35530450 0.000000e+00 1459.0
11 TraesCS5D01G040600 chr5B 85.143 175 23 3 3530 3702 268214243 268214070 4.070000e-40 176.0
12 TraesCS5D01G040600 chr5B 100.000 28 0 0 3842 3869 209648161 209648188 7.000000e-03 52.8
13 TraesCS5D01G040600 chr3D 95.661 507 22 0 1 507 362017153 362017659 0.000000e+00 815.0
14 TraesCS5D01G040600 chr3D 94.634 205 10 1 2206 2410 103774877 103774674 2.300000e-82 316.0
15 TraesCS5D01G040600 chr3D 87.356 174 21 1 3530 3702 84922696 84922869 8.690000e-47 198.0
16 TraesCS5D01G040600 chr3D 86.391 169 21 2 3530 3697 15929991 15929824 2.430000e-42 183.0
17 TraesCS5D01G040600 chr1D 95.464 507 22 1 1 507 75345866 75346371 0.000000e+00 808.0
18 TraesCS5D01G040600 chr1D 94.862 506 24 2 2 507 284274008 284274511 0.000000e+00 789.0
19 TraesCS5D01G040600 chr1D 94.675 507 26 1 1 507 284284818 284285323 0.000000e+00 785.0
20 TraesCS5D01G040600 chr4D 94.872 507 26 0 1 507 319571307 319570801 0.000000e+00 793.0
21 TraesCS5D01G040600 chr4D 97.000 200 6 0 2206 2405 58150205 58150006 1.760000e-88 337.0
22 TraesCS5D01G040600 chr6D 94.685 508 23 2 1 507 49276765 49276261 0.000000e+00 785.0
23 TraesCS5D01G040600 chr6D 94.488 508 22 4 1 507 49357151 49356649 0.000000e+00 778.0
24 TraesCS5D01G040600 chr6D 94.477 507 25 1 1 507 292133123 292132620 0.000000e+00 778.0
25 TraesCS5D01G040600 chr2B 90.464 388 37 0 2578 2965 765061880 765061493 2.730000e-141 512.0
26 TraesCS5D01G040600 chr2D 87.442 430 50 4 2539 2965 622915860 622915432 3.560000e-135 492.0
27 TraesCS5D01G040600 chr2D 85.714 175 23 2 3530 3702 485647150 485647324 2.430000e-42 183.0
28 TraesCS5D01G040600 chr2D 85.143 175 24 2 3530 3702 485603930 485604104 1.130000e-40 178.0
29 TraesCS5D01G040600 chr2D 85.143 175 24 2 3530 3702 485640249 485640423 1.130000e-40 178.0
30 TraesCS5D01G040600 chr2A 86.946 429 47 5 2539 2965 754349795 754349374 1.290000e-129 473.0
31 TraesCS5D01G040600 chr4A 93.810 210 10 2 2206 2414 706262488 706262695 2.970000e-81 313.0
32 TraesCS5D01G040600 chr7A 93.780 209 6 4 2208 2413 696653007 696653211 1.380000e-79 307.0
33 TraesCS5D01G040600 chr7A 95.135 185 4 4 2235 2418 12182479 12182299 1.800000e-73 287.0
34 TraesCS5D01G040600 chr7A 96.512 172 6 0 2235 2406 679011647 679011818 6.480000e-73 285.0
35 TraesCS5D01G040600 chr6A 95.028 181 8 1 2235 2415 24835104 24835283 2.330000e-72 283.0
36 TraesCS5D01G040600 chr3A 86.286 175 20 3 3530 3702 149984782 149984954 1.880000e-43 187.0
37 TraesCS5D01G040600 chr3A 85.380 171 24 1 3530 3699 563828328 563828158 4.070000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G040600 chr5D 41360863 41364825 3962 False 7319 7319 100.000000 1 3963 1 chr5D.!!$F1 3962
1 TraesCS5D01G040600 chr5D 121186758 121187261 503 False 784 784 94.675000 1 507 1 chr5D.!!$F2 506
2 TraesCS5D01G040600 chr5A 29680097 29683172 3075 False 1318 2082 89.702333 595 3963 3 chr5A.!!$F3 3368
3 TraesCS5D01G040600 chr5B 35528849 35531707 2858 False 1547 1635 86.877000 608 3697 2 chr5B.!!$F2 3089
4 TraesCS5D01G040600 chr3D 362017153 362017659 506 False 815 815 95.661000 1 507 1 chr3D.!!$F2 506
5 TraesCS5D01G040600 chr1D 75345866 75346371 505 False 808 808 95.464000 1 507 1 chr1D.!!$F1 506
6 TraesCS5D01G040600 chr1D 284274008 284274511 503 False 789 789 94.862000 2 507 1 chr1D.!!$F2 505
7 TraesCS5D01G040600 chr1D 284284818 284285323 505 False 785 785 94.675000 1 507 1 chr1D.!!$F3 506
8 TraesCS5D01G040600 chr4D 319570801 319571307 506 True 793 793 94.872000 1 507 1 chr4D.!!$R2 506
9 TraesCS5D01G040600 chr6D 49276261 49276765 504 True 785 785 94.685000 1 507 1 chr6D.!!$R1 506
10 TraesCS5D01G040600 chr6D 49356649 49357151 502 True 778 778 94.488000 1 507 1 chr6D.!!$R2 506
11 TraesCS5D01G040600 chr6D 292132620 292133123 503 True 778 778 94.477000 1 507 1 chr6D.!!$R3 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 735 0.120377 TGTGTATTCCCCTGTCCCCT 59.880 55.0 0.00 0.0 0.00 4.79 F
1271 1323 0.247185 TGTGCAGCTGTGATCGATGA 59.753 50.0 16.64 0.0 0.00 2.92 F
2222 2313 0.039437 ACTGTAGTGACGGTGCTTCG 60.039 55.0 0.00 0.0 43.86 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2311 0.179067 ACAACAAAAGACCGCTCCGA 60.179 50.0 0.00 0.00 0.00 4.55 R
2390 2481 0.181350 ATTTCGATCAGAGGGGCCAC 59.819 55.0 4.39 0.00 0.00 5.01 R
3421 3522 0.802222 ATGAGACACCGAATGACGCG 60.802 55.0 3.53 3.53 41.07 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 1.206371 GCTCCAAGGAAGCGGTACTAA 59.794 52.381 0.00 0.00 0.00 2.24
222 223 6.683110 GCATAGACAAGAAAAGACGGAGGATA 60.683 42.308 0.00 0.00 0.00 2.59
331 332 6.040166 CCTCTTAATAGTACGGCTTTCCTACA 59.960 42.308 0.00 0.00 0.00 2.74
341 342 4.003648 CGGCTTTCCTACAACTCAAATCT 58.996 43.478 0.00 0.00 0.00 2.40
492 494 5.982890 ATCACCAAAACAACTAAGGGATG 57.017 39.130 0.00 0.00 0.00 3.51
502 504 2.654863 ACTAAGGGATGAAAATGCCCG 58.345 47.619 0.00 0.00 46.68 6.13
507 509 2.091885 AGGGATGAAAATGCCCGTACAT 60.092 45.455 0.00 0.00 46.68 2.29
508 510 2.034558 GGGATGAAAATGCCCGTACATG 59.965 50.000 0.00 0.00 31.06 3.21
509 511 2.687935 GGATGAAAATGCCCGTACATGT 59.312 45.455 2.69 2.69 0.00 3.21
510 512 3.880490 GGATGAAAATGCCCGTACATGTA 59.120 43.478 0.08 0.08 0.00 2.29
511 513 4.518970 GGATGAAAATGCCCGTACATGTAT 59.481 41.667 9.18 0.00 0.00 2.29
512 514 5.009610 GGATGAAAATGCCCGTACATGTATT 59.990 40.000 9.18 0.00 0.00 1.89
513 515 5.906113 TGAAAATGCCCGTACATGTATTT 57.094 34.783 9.18 3.52 0.00 1.40
514 516 7.255312 GGATGAAAATGCCCGTACATGTATTTA 60.255 37.037 9.18 0.00 0.00 1.40
515 517 6.787225 TGAAAATGCCCGTACATGTATTTAC 58.213 36.000 9.18 0.00 0.00 2.01
516 518 5.761165 AAATGCCCGTACATGTATTTACC 57.239 39.130 9.18 0.00 0.00 2.85
517 519 4.699925 ATGCCCGTACATGTATTTACCT 57.300 40.909 9.18 0.00 0.00 3.08
518 520 4.062677 TGCCCGTACATGTATTTACCTC 57.937 45.455 9.18 0.00 0.00 3.85
519 521 3.054878 GCCCGTACATGTATTTACCTCG 58.945 50.000 9.18 5.87 0.00 4.63
520 522 3.243501 GCCCGTACATGTATTTACCTCGA 60.244 47.826 9.18 0.00 0.00 4.04
521 523 4.737352 GCCCGTACATGTATTTACCTCGAA 60.737 45.833 9.18 0.00 0.00 3.71
522 524 5.350633 CCCGTACATGTATTTACCTCGAAA 58.649 41.667 9.18 0.00 0.00 3.46
523 525 5.987347 CCCGTACATGTATTTACCTCGAAAT 59.013 40.000 9.18 0.00 33.60 2.17
524 526 7.147312 CCCGTACATGTATTTACCTCGAAATA 58.853 38.462 9.18 0.00 31.51 1.40
525 527 7.816031 CCCGTACATGTATTTACCTCGAAATAT 59.184 37.037 9.18 0.00 34.61 1.28
526 528 9.199982 CCGTACATGTATTTACCTCGAAATATT 57.800 33.333 9.18 0.00 34.61 1.28
553 555 9.257651 ACTGTATACTTCTCAAACTTTACACAC 57.742 33.333 4.17 0.00 0.00 3.82
554 556 9.477484 CTGTATACTTCTCAAACTTTACACACT 57.523 33.333 4.17 0.00 0.00 3.55
555 557 9.256477 TGTATACTTCTCAAACTTTACACACTG 57.744 33.333 4.17 0.00 0.00 3.66
556 558 5.485662 ACTTCTCAAACTTTACACACTGC 57.514 39.130 0.00 0.00 0.00 4.40
557 559 4.335594 ACTTCTCAAACTTTACACACTGCC 59.664 41.667 0.00 0.00 0.00 4.85
558 560 2.869801 TCTCAAACTTTACACACTGCCG 59.130 45.455 0.00 0.00 0.00 5.69
559 561 2.612212 CTCAAACTTTACACACTGCCGT 59.388 45.455 0.00 0.00 0.00 5.68
560 562 3.011119 TCAAACTTTACACACTGCCGTT 58.989 40.909 0.00 0.00 0.00 4.44
561 563 3.440872 TCAAACTTTACACACTGCCGTTT 59.559 39.130 0.00 0.00 0.00 3.60
562 564 4.082679 TCAAACTTTACACACTGCCGTTTT 60.083 37.500 0.00 0.00 0.00 2.43
563 565 4.443913 AACTTTACACACTGCCGTTTTT 57.556 36.364 0.00 0.00 0.00 1.94
585 587 6.701145 TTTTAGACAATTTACACACTGCCA 57.299 33.333 0.00 0.00 0.00 4.92
586 588 6.892658 TTTAGACAATTTACACACTGCCAT 57.107 33.333 0.00 0.00 0.00 4.40
587 589 6.892658 TTAGACAATTTACACACTGCCATT 57.107 33.333 0.00 0.00 0.00 3.16
588 590 5.789643 AGACAATTTACACACTGCCATTT 57.210 34.783 0.00 0.00 0.00 2.32
589 591 6.892658 AGACAATTTACACACTGCCATTTA 57.107 33.333 0.00 0.00 0.00 1.40
590 592 7.466746 AGACAATTTACACACTGCCATTTAT 57.533 32.000 0.00 0.00 0.00 1.40
591 593 7.538575 AGACAATTTACACACTGCCATTTATC 58.461 34.615 0.00 0.00 0.00 1.75
592 594 7.394359 AGACAATTTACACACTGCCATTTATCT 59.606 33.333 0.00 0.00 0.00 1.98
593 595 7.895759 ACAATTTACACACTGCCATTTATCTT 58.104 30.769 0.00 0.00 0.00 2.40
631 633 1.031571 TTCATTCGTGGGCCTCATGC 61.032 55.000 4.53 0.00 40.16 4.06
699 710 0.462759 CCCCGCAGAACAATCCTCTC 60.463 60.000 0.00 0.00 0.00 3.20
701 712 1.757118 CCCGCAGAACAATCCTCTCTA 59.243 52.381 0.00 0.00 0.00 2.43
721 735 0.120377 TGTGTATTCCCCTGTCCCCT 59.880 55.000 0.00 0.00 0.00 4.79
773 799 1.944177 TTTCCCTCACCCTCTCTCTG 58.056 55.000 0.00 0.00 0.00 3.35
782 808 3.805307 CTCTCTCTGCGTCGCCGT 61.805 66.667 15.88 0.00 36.15 5.68
830 869 1.457831 GCTCCCTGGACCCGATAGT 60.458 63.158 0.00 0.00 0.00 2.12
837 876 0.256752 TGGACCCGATAGTTCCTCGA 59.743 55.000 0.00 0.00 38.38 4.04
838 877 0.667453 GGACCCGATAGTTCCTCGAC 59.333 60.000 0.00 0.00 38.38 4.20
839 878 0.667453 GACCCGATAGTTCCTCGACC 59.333 60.000 0.00 0.00 38.38 4.79
841 880 0.467659 CCCGATAGTTCCTCGACCCT 60.468 60.000 0.00 0.00 38.38 4.34
843 882 2.152830 CCGATAGTTCCTCGACCCTAG 58.847 57.143 0.00 0.00 38.38 3.02
869 908 2.446994 ACGAGGTGGGTTGGTCCA 60.447 61.111 0.00 0.00 38.11 4.02
976 1018 0.462759 GGGATTTCTCGTCTGCAGGG 60.463 60.000 15.13 6.62 0.00 4.45
990 1032 1.032114 GCAGGGAATTCTTCGGGTGG 61.032 60.000 5.23 0.00 0.00 4.61
1029 1071 0.687354 TCCTGAGGTCAAAGTGCTCC 59.313 55.000 0.00 0.00 0.00 4.70
1040 1082 4.081642 GTCAAAGTGCTCCTCAGGTATACA 60.082 45.833 5.01 0.00 0.00 2.29
1041 1083 4.530553 TCAAAGTGCTCCTCAGGTATACAA 59.469 41.667 5.01 0.00 0.00 2.41
1048 1090 7.121315 AGTGCTCCTCAGGTATACAAAATTTTC 59.879 37.037 5.01 0.00 0.00 2.29
1055 1099 8.561738 TCAGGTATACAAAATTTTCTCTCACC 57.438 34.615 5.01 5.47 0.00 4.02
1167 1215 8.503458 AAGAAAGAATCACCAGTTCATATGAG 57.497 34.615 5.39 0.00 0.00 2.90
1194 1242 1.210155 GTTTCACCCGCTGTCATGC 59.790 57.895 0.00 0.00 0.00 4.06
1216 1264 2.028476 TGAAACCCCTGTGTCTATCGTG 60.028 50.000 0.00 0.00 29.38 4.35
1217 1265 0.902531 AACCCCTGTGTCTATCGTGG 59.097 55.000 0.00 0.00 0.00 4.94
1271 1323 0.247185 TGTGCAGCTGTGATCGATGA 59.753 50.000 16.64 0.00 0.00 2.92
1278 1330 1.809271 GCTGTGATCGATGACATGGCT 60.809 52.381 18.15 0.00 0.00 4.75
1280 1332 0.585357 GTGATCGATGACATGGCTGC 59.415 55.000 10.32 0.00 0.00 5.25
1299 1351 6.830324 TGGCTGCATCATCTTAAGTTCTTAAT 59.170 34.615 0.50 0.00 0.00 1.40
1305 1357 8.348507 GCATCATCTTAAGTTCTTAATCTTGGG 58.651 37.037 1.63 0.00 0.00 4.12
1311 1363 8.919145 TCTTAAGTTCTTAATCTTGGGCAAAAA 58.081 29.630 1.63 0.00 0.00 1.94
1332 1384 6.655078 AAAATTATGACTGCAGTTGAACCT 57.345 33.333 22.65 3.53 0.00 3.50
1333 1385 6.655078 AAATTATGACTGCAGTTGAACCTT 57.345 33.333 22.65 8.36 0.00 3.50
1334 1386 5.633830 ATTATGACTGCAGTTGAACCTTG 57.366 39.130 22.65 0.00 0.00 3.61
1335 1387 2.708216 TGACTGCAGTTGAACCTTGA 57.292 45.000 22.65 0.00 0.00 3.02
1336 1388 2.288666 TGACTGCAGTTGAACCTTGAC 58.711 47.619 22.65 4.28 0.00 3.18
1359 1411 5.070313 ACTGGTTCACATTATTTGTTTGCCT 59.930 36.000 0.00 0.00 36.00 4.75
1367 1419 6.928492 CACATTATTTGTTTGCCTGGTTAACT 59.072 34.615 5.42 0.00 36.00 2.24
1368 1420 8.085296 CACATTATTTGTTTGCCTGGTTAACTA 58.915 33.333 5.42 0.00 36.00 2.24
1369 1421 8.643324 ACATTATTTGTTTGCCTGGTTAACTAA 58.357 29.630 5.42 11.24 33.74 2.24
1370 1422 8.921670 CATTATTTGTTTGCCTGGTTAACTAAC 58.078 33.333 5.42 0.00 35.50 2.34
1371 1423 6.724893 ATTTGTTTGCCTGGTTAACTAACT 57.275 33.333 5.42 2.79 36.47 2.24
1427 1479 7.508977 TGGATTATGATTGGTTTCCTAATTCCC 59.491 37.037 0.00 0.00 0.00 3.97
1448 1500 4.362279 CCATCAATTAATTTGCTCACGGG 58.638 43.478 0.00 0.00 35.16 5.28
1517 1569 4.455606 AGAAAAGGATATCTTGGAAGCCG 58.544 43.478 2.05 0.00 35.55 5.52
1541 1593 6.706270 CGGTATCTAGTTGAAACCTTATGCAT 59.294 38.462 3.79 3.79 0.00 3.96
1552 1604 2.785269 ACCTTATGCATCCCTGATTCCA 59.215 45.455 0.19 0.00 0.00 3.53
1569 1621 6.808829 TGATTCCATTCAAATATGTCTTGCC 58.191 36.000 0.00 0.00 0.00 4.52
1571 1623 4.522114 TCCATTCAAATATGTCTTGCCGA 58.478 39.130 0.00 0.00 0.00 5.54
1572 1624 4.576053 TCCATTCAAATATGTCTTGCCGAG 59.424 41.667 0.00 0.00 0.00 4.63
1573 1625 4.336433 CCATTCAAATATGTCTTGCCGAGT 59.664 41.667 0.00 0.00 0.00 4.18
1574 1626 5.163622 CCATTCAAATATGTCTTGCCGAGTT 60.164 40.000 0.00 0.00 0.00 3.01
1575 1627 4.944962 TCAAATATGTCTTGCCGAGTTG 57.055 40.909 0.00 0.00 0.00 3.16
1576 1628 3.126858 TCAAATATGTCTTGCCGAGTTGC 59.873 43.478 0.00 0.00 0.00 4.17
1577 1629 1.668419 ATATGTCTTGCCGAGTTGCC 58.332 50.000 0.00 0.00 0.00 4.52
1580 1632 2.664851 TCTTGCCGAGTTGCCGTG 60.665 61.111 0.00 0.00 0.00 4.94
1581 1633 2.664851 CTTGCCGAGTTGCCGTGA 60.665 61.111 0.00 0.00 0.00 4.35
1612 1664 2.557924 GGTCACCATTCTGCAATGTGAA 59.442 45.455 0.00 0.00 38.22 3.18
1716 1768 4.453480 TCTGAATGGGGGTATCAATTCC 57.547 45.455 0.00 0.00 0.00 3.01
1775 1827 1.866015 ATCAGCCAGGTACTACTGCA 58.134 50.000 0.00 0.00 40.37 4.41
1786 1838 4.003648 GGTACTACTGCATTGTTCAAGCT 58.996 43.478 0.00 0.00 0.00 3.74
1800 1852 7.444558 TTGTTCAAGCTTAAATGTTTCGTTC 57.555 32.000 0.00 0.00 0.00 3.95
1816 1868 1.800586 CGTTCACCTCAACACATCCTG 59.199 52.381 0.00 0.00 0.00 3.86
1823 1875 5.063204 CACCTCAACACATCCTGAAACTTA 58.937 41.667 0.00 0.00 0.00 2.24
1825 1877 4.152402 CCTCAACACATCCTGAAACTTACG 59.848 45.833 0.00 0.00 0.00 3.18
1896 1948 4.670227 AAGCGATTTGTCAGCTTCTTAC 57.330 40.909 0.00 0.00 46.91 2.34
1898 1950 4.065088 AGCGATTTGTCAGCTTCTTACAA 58.935 39.130 0.00 0.00 38.13 2.41
1908 1966 4.695455 TCAGCTTCTTACAATGTGTTAGCC 59.305 41.667 0.00 0.00 28.05 3.93
1930 1998 4.399303 CCACTCAAAAGTTCCAAAGTGTCT 59.601 41.667 0.00 0.00 33.87 3.41
1980 2048 4.647399 TGGCCCAGCTTGGTATTTAATTAC 59.353 41.667 5.61 0.00 35.17 1.89
2034 2102 6.513393 GCTTGTGTTTATAGTTGCTGTCAAGT 60.513 38.462 0.00 0.00 39.13 3.16
2050 2118 5.972935 TGTCAAGTTCTGTGTCTTTCTGTA 58.027 37.500 0.00 0.00 0.00 2.74
2064 2132 2.336945 TCTGTAGATGCCAGCAATGG 57.663 50.000 0.00 0.00 0.00 3.16
2076 2144 4.510038 CCAGCAATGGCATAAGGATTAC 57.490 45.455 0.00 0.00 44.61 1.89
2109 2177 4.081476 TCCTGTGACATACTGAACTCCATG 60.081 45.833 0.00 0.00 0.00 3.66
2124 2208 8.642935 TGAACTCCATGTTTCATGGTTATTTA 57.357 30.769 22.68 12.53 39.30 1.40
2156 2247 6.487668 TCTTCAGTCTTCATGAGCATTTTTCA 59.512 34.615 0.00 0.00 0.00 2.69
2200 2291 8.637099 TCAGAACCATCATAGAGATTAAGTGAG 58.363 37.037 0.00 0.00 33.72 3.51
2206 2297 9.689976 CCATCATAGAGATTAAGTGAGTTACTG 57.310 37.037 0.00 0.00 35.54 2.74
2212 2303 8.865420 AGAGATTAAGTGAGTTACTGTAGTGA 57.135 34.615 0.00 0.00 40.26 3.41
2213 2304 8.732531 AGAGATTAAGTGAGTTACTGTAGTGAC 58.267 37.037 0.00 0.00 40.26 3.67
2214 2305 7.528307 AGATTAAGTGAGTTACTGTAGTGACG 58.472 38.462 0.00 0.00 40.26 4.35
2215 2306 4.500603 AAGTGAGTTACTGTAGTGACGG 57.499 45.455 0.00 0.00 40.26 4.79
2217 2308 3.252701 AGTGAGTTACTGTAGTGACGGTG 59.747 47.826 0.00 0.00 45.17 4.94
2218 2309 2.030540 TGAGTTACTGTAGTGACGGTGC 60.031 50.000 0.00 0.00 45.17 5.01
2219 2310 2.228343 GAGTTACTGTAGTGACGGTGCT 59.772 50.000 0.00 0.00 45.17 4.40
2220 2311 2.626743 AGTTACTGTAGTGACGGTGCTT 59.373 45.455 0.00 0.00 45.17 3.91
2221 2312 2.985139 GTTACTGTAGTGACGGTGCTTC 59.015 50.000 0.00 0.00 45.17 3.86
2222 2313 0.039437 ACTGTAGTGACGGTGCTTCG 60.039 55.000 0.00 0.00 43.86 3.79
2223 2314 0.732880 CTGTAGTGACGGTGCTTCGG 60.733 60.000 4.51 0.00 0.00 4.30
2224 2315 1.174078 TGTAGTGACGGTGCTTCGGA 61.174 55.000 4.51 0.00 0.00 4.55
2225 2316 0.456312 GTAGTGACGGTGCTTCGGAG 60.456 60.000 4.51 0.00 0.00 4.63
2234 2325 3.967715 GCTTCGGAGCGGTCTTTT 58.032 55.556 15.18 0.00 39.48 2.27
2235 2326 1.497722 GCTTCGGAGCGGTCTTTTG 59.502 57.895 15.18 4.43 39.48 2.44
2236 2327 1.228657 GCTTCGGAGCGGTCTTTTGT 61.229 55.000 15.18 0.00 39.48 2.83
2237 2328 1.226746 CTTCGGAGCGGTCTTTTGTT 58.773 50.000 15.18 0.00 0.00 2.83
2238 2329 0.941542 TTCGGAGCGGTCTTTTGTTG 59.058 50.000 15.18 0.00 0.00 3.33
2239 2330 0.179067 TCGGAGCGGTCTTTTGTTGT 60.179 50.000 15.18 0.00 0.00 3.32
2240 2331 1.068895 TCGGAGCGGTCTTTTGTTGTA 59.931 47.619 15.18 0.00 0.00 2.41
2241 2332 1.459592 CGGAGCGGTCTTTTGTTGTAG 59.540 52.381 15.18 0.00 0.00 2.74
2242 2333 1.197036 GGAGCGGTCTTTTGTTGTAGC 59.803 52.381 15.18 0.00 0.00 3.58
2243 2334 1.871039 GAGCGGTCTTTTGTTGTAGCA 59.129 47.619 7.51 0.00 0.00 3.49
2244 2335 2.484264 GAGCGGTCTTTTGTTGTAGCAT 59.516 45.455 7.51 0.00 0.00 3.79
2245 2336 2.484264 AGCGGTCTTTTGTTGTAGCATC 59.516 45.455 0.00 0.00 0.00 3.91
2246 2337 2.414161 GCGGTCTTTTGTTGTAGCATCC 60.414 50.000 0.00 0.00 0.00 3.51
2247 2338 3.074412 CGGTCTTTTGTTGTAGCATCCT 58.926 45.455 0.00 0.00 0.00 3.24
2248 2339 3.120199 CGGTCTTTTGTTGTAGCATCCTG 60.120 47.826 0.00 0.00 0.00 3.86
2249 2340 3.821033 GGTCTTTTGTTGTAGCATCCTGT 59.179 43.478 0.00 0.00 0.00 4.00
2250 2341 5.001232 GGTCTTTTGTTGTAGCATCCTGTA 58.999 41.667 0.00 0.00 0.00 2.74
2251 2342 5.122396 GGTCTTTTGTTGTAGCATCCTGTAG 59.878 44.000 0.00 0.00 0.00 2.74
2252 2343 5.122396 GTCTTTTGTTGTAGCATCCTGTAGG 59.878 44.000 0.00 0.00 0.00 3.18
2253 2344 4.634012 TTTGTTGTAGCATCCTGTAGGT 57.366 40.909 0.00 0.00 36.34 3.08
2254 2345 3.610040 TGTTGTAGCATCCTGTAGGTG 57.390 47.619 0.00 0.00 36.34 4.00
2255 2346 2.280628 GTTGTAGCATCCTGTAGGTGC 58.719 52.381 13.91 13.91 40.26 5.01
2256 2347 1.567357 TGTAGCATCCTGTAGGTGCA 58.433 50.000 20.01 0.00 41.46 4.57
2257 2348 1.482182 TGTAGCATCCTGTAGGTGCAG 59.518 52.381 20.01 0.00 41.46 4.41
2258 2349 1.482593 GTAGCATCCTGTAGGTGCAGT 59.517 52.381 20.01 9.00 41.46 4.40
2259 2350 0.539051 AGCATCCTGTAGGTGCAGTC 59.461 55.000 20.01 0.00 41.46 3.51
2260 2351 0.807667 GCATCCTGTAGGTGCAGTCG 60.808 60.000 15.76 0.00 39.95 4.18
2261 2352 0.817654 CATCCTGTAGGTGCAGTCGA 59.182 55.000 0.00 0.00 34.84 4.20
2262 2353 1.204704 CATCCTGTAGGTGCAGTCGAA 59.795 52.381 0.00 0.00 34.84 3.71
2263 2354 0.888619 TCCTGTAGGTGCAGTCGAAG 59.111 55.000 0.00 0.00 34.84 3.79
2264 2355 0.603569 CCTGTAGGTGCAGTCGAAGT 59.396 55.000 0.00 0.00 34.84 3.01
2265 2356 1.670087 CCTGTAGGTGCAGTCGAAGTG 60.670 57.143 0.00 0.00 34.84 3.16
2266 2357 0.319555 TGTAGGTGCAGTCGAAGTGC 60.320 55.000 12.97 12.97 44.57 4.40
2267 2358 1.014564 GTAGGTGCAGTCGAAGTGCC 61.015 60.000 16.28 8.97 43.71 5.01
2268 2359 1.185618 TAGGTGCAGTCGAAGTGCCT 61.186 55.000 16.28 10.49 43.71 4.75
2269 2360 2.029844 GGTGCAGTCGAAGTGCCTC 61.030 63.158 16.28 10.30 43.71 4.70
2270 2361 1.300931 GTGCAGTCGAAGTGCCTCA 60.301 57.895 16.28 0.00 43.71 3.86
2271 2362 0.880278 GTGCAGTCGAAGTGCCTCAA 60.880 55.000 16.28 0.00 43.71 3.02
2272 2363 0.601046 TGCAGTCGAAGTGCCTCAAG 60.601 55.000 16.28 0.00 43.71 3.02
2273 2364 0.319900 GCAGTCGAAGTGCCTCAAGA 60.320 55.000 9.42 0.00 38.58 3.02
2274 2365 1.674221 GCAGTCGAAGTGCCTCAAGAT 60.674 52.381 9.42 0.00 38.58 2.40
2275 2366 1.998315 CAGTCGAAGTGCCTCAAGATG 59.002 52.381 0.00 0.00 0.00 2.90
2276 2367 1.620819 AGTCGAAGTGCCTCAAGATGT 59.379 47.619 0.00 0.00 0.00 3.06
2277 2368 2.826128 AGTCGAAGTGCCTCAAGATGTA 59.174 45.455 0.00 0.00 0.00 2.29
2278 2369 3.119316 AGTCGAAGTGCCTCAAGATGTAG 60.119 47.826 0.00 0.00 0.00 2.74
2279 2370 2.166459 TCGAAGTGCCTCAAGATGTAGG 59.834 50.000 0.00 0.00 35.86 3.18
2280 2371 2.166459 CGAAGTGCCTCAAGATGTAGGA 59.834 50.000 0.00 0.00 34.58 2.94
2281 2372 3.736433 CGAAGTGCCTCAAGATGTAGGAG 60.736 52.174 0.00 0.00 34.58 3.69
2282 2373 2.826488 AGTGCCTCAAGATGTAGGAGT 58.174 47.619 0.00 0.00 34.58 3.85
2283 2374 3.982516 AGTGCCTCAAGATGTAGGAGTA 58.017 45.455 0.00 0.00 34.58 2.59
2284 2375 3.957497 AGTGCCTCAAGATGTAGGAGTAG 59.043 47.826 0.00 0.00 34.58 2.57
2285 2376 3.702045 GTGCCTCAAGATGTAGGAGTAGT 59.298 47.826 0.00 0.00 34.58 2.73
2286 2377 4.160626 GTGCCTCAAGATGTAGGAGTAGTT 59.839 45.833 0.00 0.00 34.58 2.24
2287 2378 4.777896 TGCCTCAAGATGTAGGAGTAGTTT 59.222 41.667 0.00 0.00 34.58 2.66
2288 2379 5.248477 TGCCTCAAGATGTAGGAGTAGTTTT 59.752 40.000 0.00 0.00 34.58 2.43
2289 2380 6.174049 GCCTCAAGATGTAGGAGTAGTTTTT 58.826 40.000 0.00 0.00 34.58 1.94
2322 2413 5.826601 TGCATATGTTAGGCATCGAAAAA 57.173 34.783 4.29 0.00 40.93 1.94
2349 2440 9.778741 AGTTAAGTCTGTATGAAACTTGATTCA 57.221 29.630 0.00 0.00 43.03 2.57
2359 2450 7.634671 ATGAAACTTGATTCATATGCTGTGA 57.365 32.000 0.00 0.00 45.70 3.58
2360 2451 6.845302 TGAAACTTGATTCATATGCTGTGAC 58.155 36.000 0.00 0.00 34.50 3.67
2361 2452 6.656270 TGAAACTTGATTCATATGCTGTGACT 59.344 34.615 0.00 0.00 34.50 3.41
2362 2453 6.674694 AACTTGATTCATATGCTGTGACTC 57.325 37.500 0.00 0.00 0.00 3.36
2363 2454 5.121811 ACTTGATTCATATGCTGTGACTCC 58.878 41.667 0.00 0.00 0.00 3.85
2364 2455 4.758773 TGATTCATATGCTGTGACTCCA 57.241 40.909 0.00 0.00 0.00 3.86
2365 2456 5.300411 TGATTCATATGCTGTGACTCCAT 57.700 39.130 0.00 0.00 0.00 3.41
2366 2457 5.687780 TGATTCATATGCTGTGACTCCATT 58.312 37.500 0.00 0.00 0.00 3.16
2367 2458 6.124340 TGATTCATATGCTGTGACTCCATTT 58.876 36.000 0.00 0.00 0.00 2.32
2368 2459 6.604396 TGATTCATATGCTGTGACTCCATTTT 59.396 34.615 0.00 0.00 0.00 1.82
2369 2460 6.441093 TTCATATGCTGTGACTCCATTTTC 57.559 37.500 0.00 0.00 0.00 2.29
2370 2461 4.571984 TCATATGCTGTGACTCCATTTTCG 59.428 41.667 0.00 0.00 0.00 3.46
2371 2462 2.254546 TGCTGTGACTCCATTTTCGT 57.745 45.000 0.00 0.00 0.00 3.85
2372 2463 3.394674 TGCTGTGACTCCATTTTCGTA 57.605 42.857 0.00 0.00 0.00 3.43
2373 2464 3.734463 TGCTGTGACTCCATTTTCGTAA 58.266 40.909 0.00 0.00 0.00 3.18
2374 2465 4.323417 TGCTGTGACTCCATTTTCGTAAT 58.677 39.130 0.00 0.00 0.00 1.89
2375 2466 4.154015 TGCTGTGACTCCATTTTCGTAATG 59.846 41.667 6.18 6.18 0.00 1.90
2376 2467 4.391830 GCTGTGACTCCATTTTCGTAATGA 59.608 41.667 12.47 1.97 0.00 2.57
2377 2468 5.106712 GCTGTGACTCCATTTTCGTAATGAA 60.107 40.000 12.47 0.00 33.85 2.57
2378 2469 6.567701 GCTGTGACTCCATTTTCGTAATGAAA 60.568 38.462 12.47 0.00 44.70 2.69
2386 2477 3.878160 TTTCGTAATGAAAATGGGGGC 57.122 42.857 0.00 0.00 43.46 5.80
2387 2478 1.770294 TCGTAATGAAAATGGGGGCC 58.230 50.000 0.00 0.00 0.00 5.80
2388 2479 0.383949 CGTAATGAAAATGGGGGCCG 59.616 55.000 0.00 0.00 0.00 6.13
2389 2480 1.480789 GTAATGAAAATGGGGGCCGT 58.519 50.000 0.00 0.00 0.00 5.68
2390 2481 1.136110 GTAATGAAAATGGGGGCCGTG 59.864 52.381 0.00 0.00 0.00 4.94
2391 2482 0.544120 AATGAAAATGGGGGCCGTGT 60.544 50.000 0.00 0.00 0.00 4.49
2392 2483 1.257055 ATGAAAATGGGGGCCGTGTG 61.257 55.000 0.00 0.00 0.00 3.82
2393 2484 2.603171 AAAATGGGGGCCGTGTGG 60.603 61.111 0.00 0.00 38.77 4.17
2403 2494 3.402681 CCGTGTGGCCCCTCTGAT 61.403 66.667 0.00 0.00 0.00 2.90
2404 2495 2.187946 CGTGTGGCCCCTCTGATC 59.812 66.667 0.00 0.00 0.00 2.92
2405 2496 2.187946 GTGTGGCCCCTCTGATCG 59.812 66.667 0.00 0.00 0.00 3.69
2406 2497 2.038813 TGTGGCCCCTCTGATCGA 59.961 61.111 0.00 0.00 0.00 3.59
2407 2498 1.612146 TGTGGCCCCTCTGATCGAA 60.612 57.895 0.00 0.00 0.00 3.71
2408 2499 1.198094 TGTGGCCCCTCTGATCGAAA 61.198 55.000 0.00 0.00 0.00 3.46
2409 2500 0.181350 GTGGCCCCTCTGATCGAAAT 59.819 55.000 0.00 0.00 0.00 2.17
2410 2501 1.416401 GTGGCCCCTCTGATCGAAATA 59.584 52.381 0.00 0.00 0.00 1.40
2411 2502 2.123589 TGGCCCCTCTGATCGAAATAA 58.876 47.619 0.00 0.00 0.00 1.40
2412 2503 2.507886 TGGCCCCTCTGATCGAAATAAA 59.492 45.455 0.00 0.00 0.00 1.40
2413 2504 3.053991 TGGCCCCTCTGATCGAAATAAAA 60.054 43.478 0.00 0.00 0.00 1.52
2414 2505 4.145052 GGCCCCTCTGATCGAAATAAAAT 58.855 43.478 0.00 0.00 0.00 1.82
2415 2506 5.163141 TGGCCCCTCTGATCGAAATAAAATA 60.163 40.000 0.00 0.00 0.00 1.40
2416 2507 5.768164 GGCCCCTCTGATCGAAATAAAATAA 59.232 40.000 0.00 0.00 0.00 1.40
2417 2508 6.264518 GGCCCCTCTGATCGAAATAAAATAAA 59.735 38.462 0.00 0.00 0.00 1.40
2418 2509 7.201875 GGCCCCTCTGATCGAAATAAAATAAAA 60.202 37.037 0.00 0.00 0.00 1.52
2419 2510 8.360390 GCCCCTCTGATCGAAATAAAATAAAAT 58.640 33.333 0.00 0.00 0.00 1.82
2463 2559 0.108019 AAAGAACCGTGTGACCTCCC 59.892 55.000 0.00 0.00 0.00 4.30
2572 2668 5.538813 AGAGGTGAACTAGTAACATGTGTCA 59.461 40.000 0.00 0.00 0.00 3.58
2650 2746 2.038557 GGTAGACAACTCTGGAGCCAAA 59.961 50.000 0.00 0.00 0.00 3.28
2692 2788 0.475632 TGAGGGGGAAGAAAGGAGCA 60.476 55.000 0.00 0.00 0.00 4.26
2698 2794 1.282157 GGGAAGAAAGGAGCAAGGCTA 59.718 52.381 0.00 0.00 39.88 3.93
2770 2866 5.491982 GTCAAGAAAGGTGATGTGGTCTAT 58.508 41.667 0.00 0.00 0.00 1.98
2806 2902 1.739371 GCCGCTATGAAGAAAGGACGT 60.739 52.381 0.00 0.00 0.00 4.34
2830 2926 2.435059 GGCAGCGAGGTCCAGTTC 60.435 66.667 0.00 0.00 0.00 3.01
2941 3037 3.054582 AGAAGCATCTCAAGATCTTGGCA 60.055 43.478 30.33 19.38 40.78 4.92
3027 3123 5.127682 GGAATGGAATTAACATTGCTCCAGT 59.872 40.000 15.24 0.00 41.58 4.00
3028 3124 6.321181 GGAATGGAATTAACATTGCTCCAGTA 59.679 38.462 15.24 0.00 41.58 2.74
3041 3137 3.636300 TGCTCCAGTAATGTTTTGCTTGT 59.364 39.130 0.00 0.00 0.00 3.16
3048 3144 1.412079 ATGTTTTGCTTGTCCCTGCA 58.588 45.000 0.00 0.00 37.42 4.41
3050 3146 0.746659 GTTTTGCTTGTCCCTGCAGT 59.253 50.000 13.81 0.00 40.46 4.40
3152 3252 2.985896 CCCTCGGCAGATCAAGTTTTA 58.014 47.619 0.00 0.00 0.00 1.52
3259 3360 4.681483 GCCTGTAATTTTCTGCTTGTTGAC 59.319 41.667 0.00 0.00 0.00 3.18
3306 3407 7.720957 CCTATCATTACATTCCTGGAACATGAA 59.279 37.037 12.11 4.46 46.10 2.57
3314 3415 2.303022 TCCTGGAACATGAAGAGGACAC 59.697 50.000 0.00 0.00 38.20 3.67
3364 3465 4.167319 TGCTCCCTGCTTCACCATATATA 58.833 43.478 0.00 0.00 43.37 0.86
3369 3470 7.177392 GCTCCCTGCTTCACCATATATATTTTT 59.823 37.037 0.00 0.00 38.95 1.94
3421 3522 1.305201 TGTCACCTTTTTCAGCCGTC 58.695 50.000 0.00 0.00 0.00 4.79
3423 3524 1.082104 CACCTTTTTCAGCCGTCGC 60.082 57.895 0.00 0.00 0.00 5.19
3449 3552 0.460284 CGGTGTCTCATCTTTCCCGG 60.460 60.000 0.00 0.00 0.00 5.73
3453 3556 1.550524 TGTCTCATCTTTCCCGGTGAG 59.449 52.381 10.47 10.47 39.47 3.51
3557 3669 3.595021 ACATGATCATGGAGGATGAGGA 58.405 45.455 33.31 0.00 44.54 3.71
3601 3713 4.463539 TGGAATTTGAGAACATGGGTGATG 59.536 41.667 0.00 0.00 38.15 3.07
3632 3748 2.726821 TCCAAATCAGAATCTGGCCAC 58.273 47.619 10.71 0.00 31.51 5.01
3657 3773 8.587608 ACATTTGATGAGTTTGTCCAAATACAT 58.412 29.630 11.48 11.48 36.17 2.29
3702 3818 4.898265 ACTCATGAGCAGCTTAAGGAGATA 59.102 41.667 22.83 0.00 0.00 1.98
3712 3828 6.422400 GCAGCTTAAGGAGATAATAGTGTGTC 59.578 42.308 4.29 0.00 0.00 3.67
3727 3843 2.955660 GTGTGTCCATTTGGAGTTGGAA 59.044 45.455 0.00 0.00 46.49 3.53
3731 3847 3.573538 TGTCCATTTGGAGTTGGAATGTG 59.426 43.478 0.00 0.00 46.49 3.21
3757 3873 8.846607 GTTTGTCCAAATACATTACAATTCGAC 58.153 33.333 0.00 0.00 32.36 4.20
3758 3874 7.674471 TGTCCAAATACATTACAATTCGACA 57.326 32.000 0.00 0.00 0.00 4.35
3759 3875 8.275015 TGTCCAAATACATTACAATTCGACAT 57.725 30.769 0.00 0.00 0.00 3.06
3760 3876 8.394877 TGTCCAAATACATTACAATTCGACATC 58.605 33.333 0.00 0.00 0.00 3.06
3761 3877 7.582679 GTCCAAATACATTACAATTCGACATCG 59.417 37.037 0.00 0.00 41.45 3.84
3774 3890 4.028852 TCGACATCGACCAACTTATGAG 57.971 45.455 0.00 0.00 44.22 2.90
3775 3891 2.535984 CGACATCGACCAACTTATGAGC 59.464 50.000 0.00 0.00 43.02 4.26
3776 3892 3.521560 GACATCGACCAACTTATGAGCA 58.478 45.455 0.00 0.00 0.00 4.26
3777 3893 3.525537 ACATCGACCAACTTATGAGCAG 58.474 45.455 0.00 0.00 0.00 4.24
3778 3894 2.010145 TCGACCAACTTATGAGCAGC 57.990 50.000 0.00 0.00 0.00 5.25
3779 3895 1.550524 TCGACCAACTTATGAGCAGCT 59.449 47.619 0.00 0.00 0.00 4.24
3780 3896 2.028112 TCGACCAACTTATGAGCAGCTT 60.028 45.455 0.00 0.00 0.00 3.74
3781 3897 3.194755 TCGACCAACTTATGAGCAGCTTA 59.805 43.478 0.00 0.00 0.00 3.09
3782 3898 3.932710 CGACCAACTTATGAGCAGCTTAA 59.067 43.478 0.00 0.00 0.00 1.85
3783 3899 4.033358 CGACCAACTTATGAGCAGCTTAAG 59.967 45.833 11.05 11.05 39.12 1.85
3784 3900 4.265073 ACCAACTTATGAGCAGCTTAAGG 58.735 43.478 15.44 4.64 38.11 2.69
3802 3918 9.646522 AGCTTAAGGATTGTAATGTATTTGGAT 57.353 29.630 4.29 0.00 0.00 3.41
3845 3961 3.379372 ACTCAATCAGATGCCGAATTTGG 59.621 43.478 7.44 7.44 0.00 3.28
3846 3962 2.689471 TCAATCAGATGCCGAATTTGGG 59.311 45.455 13.87 3.02 0.00 4.12
3873 3989 2.359900 GTTGGAGATGCCCTAACACAG 58.640 52.381 0.00 0.00 34.97 3.66
3890 4006 7.276658 CCTAACACAGTTCATAGTGAATCTGTC 59.723 40.741 17.15 0.00 41.80 3.51
3891 4007 6.352016 ACACAGTTCATAGTGAATCTGTCT 57.648 37.500 17.15 9.31 41.80 3.41
3892 4008 6.162079 ACACAGTTCATAGTGAATCTGTCTG 58.838 40.000 17.15 12.04 41.80 3.51
3893 4009 6.162079 CACAGTTCATAGTGAATCTGTCTGT 58.838 40.000 17.15 12.48 41.80 3.41
3894 4010 7.039714 ACACAGTTCATAGTGAATCTGTCTGTA 60.040 37.037 17.15 0.00 41.80 2.74
3895 4011 7.274468 CACAGTTCATAGTGAATCTGTCTGTAC 59.726 40.741 17.15 0.00 41.80 2.90
3896 4012 7.039714 ACAGTTCATAGTGAATCTGTCTGTACA 60.040 37.037 15.57 0.00 40.86 2.90
3897 4013 7.978414 CAGTTCATAGTGAATCTGTCTGTACAT 59.022 37.037 0.00 0.00 38.79 2.29
3898 4014 7.978414 AGTTCATAGTGAATCTGTCTGTACATG 59.022 37.037 0.00 0.00 38.79 3.21
3899 4015 7.410120 TCATAGTGAATCTGTCTGTACATGT 57.590 36.000 2.69 2.69 34.37 3.21
3900 4016 7.484140 TCATAGTGAATCTGTCTGTACATGTC 58.516 38.462 0.00 0.00 34.37 3.06
3925 4041 4.452455 GTCTTCACAGTTGAACCATCGAAT 59.548 41.667 0.00 0.00 36.79 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.893801 GCGGTAGTACTATGGCCTCAT 59.106 52.381 5.75 0.00 37.40 2.90
77 78 3.931247 TACCGCAAGTGCCCACGT 61.931 61.111 0.00 0.00 37.91 4.49
222 223 2.452600 TTCCTTTGGCACTTTGGAGT 57.547 45.000 0.00 0.00 36.25 3.85
331 332 6.259387 ACGTTTCTTTTCGGTAGATTTGAGTT 59.741 34.615 0.00 0.00 0.00 3.01
341 342 6.198966 GTGTTTCTCTACGTTTCTTTTCGGTA 59.801 38.462 0.00 0.00 0.00 4.02
492 494 6.038936 AGGTAAATACATGTACGGGCATTTTC 59.961 38.462 7.96 3.03 0.00 2.29
527 529 9.257651 GTGTGTAAAGTTTGAGAAGTATACAGT 57.742 33.333 5.50 0.00 0.00 3.55
528 530 9.477484 AGTGTGTAAAGTTTGAGAAGTATACAG 57.523 33.333 5.50 0.00 0.00 2.74
529 531 9.256477 CAGTGTGTAAAGTTTGAGAAGTATACA 57.744 33.333 5.50 0.00 0.00 2.29
530 532 8.221766 GCAGTGTGTAAAGTTTGAGAAGTATAC 58.778 37.037 0.00 0.00 0.00 1.47
531 533 7.386848 GGCAGTGTGTAAAGTTTGAGAAGTATA 59.613 37.037 0.00 0.00 0.00 1.47
532 534 6.204882 GGCAGTGTGTAAAGTTTGAGAAGTAT 59.795 38.462 0.00 0.00 0.00 2.12
533 535 5.526111 GGCAGTGTGTAAAGTTTGAGAAGTA 59.474 40.000 0.00 0.00 0.00 2.24
534 536 4.335594 GGCAGTGTGTAAAGTTTGAGAAGT 59.664 41.667 0.00 0.00 0.00 3.01
535 537 4.552767 CGGCAGTGTGTAAAGTTTGAGAAG 60.553 45.833 0.00 0.00 0.00 2.85
536 538 3.311322 CGGCAGTGTGTAAAGTTTGAGAA 59.689 43.478 0.00 0.00 0.00 2.87
537 539 2.869801 CGGCAGTGTGTAAAGTTTGAGA 59.130 45.455 0.00 0.00 0.00 3.27
538 540 2.612212 ACGGCAGTGTGTAAAGTTTGAG 59.388 45.455 0.00 0.00 0.00 3.02
539 541 2.634600 ACGGCAGTGTGTAAAGTTTGA 58.365 42.857 0.00 0.00 0.00 2.69
540 542 3.414549 AACGGCAGTGTGTAAAGTTTG 57.585 42.857 0.00 0.00 0.00 2.93
541 543 4.443913 AAAACGGCAGTGTGTAAAGTTT 57.556 36.364 0.00 0.00 32.58 2.66
542 544 4.443913 AAAAACGGCAGTGTGTAAAGTT 57.556 36.364 0.00 0.00 0.00 2.66
561 563 7.101652 TGGCAGTGTGTAAATTGTCTAAAAA 57.898 32.000 0.00 0.00 0.00 1.94
562 564 6.701145 TGGCAGTGTGTAAATTGTCTAAAA 57.299 33.333 0.00 0.00 0.00 1.52
563 565 6.892658 ATGGCAGTGTGTAAATTGTCTAAA 57.107 33.333 0.00 0.00 0.00 1.85
564 566 6.892658 AATGGCAGTGTGTAAATTGTCTAA 57.107 33.333 0.00 0.00 0.00 2.10
565 567 6.892658 AAATGGCAGTGTGTAAATTGTCTA 57.107 33.333 0.00 0.00 0.00 2.59
566 568 5.789643 AAATGGCAGTGTGTAAATTGTCT 57.210 34.783 0.00 0.00 0.00 3.41
567 569 7.538575 AGATAAATGGCAGTGTGTAAATTGTC 58.461 34.615 0.00 0.00 0.00 3.18
568 570 7.466746 AGATAAATGGCAGTGTGTAAATTGT 57.533 32.000 0.00 0.00 0.00 2.71
569 571 8.761575 AAAGATAAATGGCAGTGTGTAAATTG 57.238 30.769 0.00 0.00 0.00 2.32
570 572 9.206870 CAAAAGATAAATGGCAGTGTGTAAATT 57.793 29.630 0.00 0.00 0.00 1.82
571 573 8.584157 TCAAAAGATAAATGGCAGTGTGTAAAT 58.416 29.630 0.00 0.00 0.00 1.40
572 574 7.946207 TCAAAAGATAAATGGCAGTGTGTAAA 58.054 30.769 0.00 0.00 0.00 2.01
573 575 7.309133 CCTCAAAAGATAAATGGCAGTGTGTAA 60.309 37.037 0.00 0.00 0.00 2.41
574 576 6.150976 CCTCAAAAGATAAATGGCAGTGTGTA 59.849 38.462 0.00 0.00 0.00 2.90
575 577 5.047802 CCTCAAAAGATAAATGGCAGTGTGT 60.048 40.000 0.00 0.00 0.00 3.72
576 578 5.183713 TCCTCAAAAGATAAATGGCAGTGTG 59.816 40.000 0.00 0.00 0.00 3.82
577 579 5.324409 TCCTCAAAAGATAAATGGCAGTGT 58.676 37.500 0.00 0.00 0.00 3.55
578 580 5.902613 TCCTCAAAAGATAAATGGCAGTG 57.097 39.130 0.00 0.00 0.00 3.66
579 581 7.486407 AAATCCTCAAAAGATAAATGGCAGT 57.514 32.000 0.00 0.00 0.00 4.40
589 591 8.542080 TGAATGGCAATAAAATCCTCAAAAGAT 58.458 29.630 0.00 0.00 0.00 2.40
590 592 7.905265 TGAATGGCAATAAAATCCTCAAAAGA 58.095 30.769 0.00 0.00 0.00 2.52
591 593 8.726870 ATGAATGGCAATAAAATCCTCAAAAG 57.273 30.769 0.00 0.00 0.00 2.27
592 594 9.165035 GAATGAATGGCAATAAAATCCTCAAAA 57.835 29.630 0.00 0.00 0.00 2.44
593 595 7.492020 CGAATGAATGGCAATAAAATCCTCAAA 59.508 33.333 0.00 0.00 0.00 2.69
631 633 2.203252 CATCATCCTGGGCCACGG 60.203 66.667 0.00 9.06 0.00 4.94
677 681 1.452108 GGATTGTTCTGCGGGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
678 682 1.910580 GAGGATTGTTCTGCGGGGGA 61.911 60.000 0.00 0.00 0.00 4.81
679 683 1.452108 GAGGATTGTTCTGCGGGGG 60.452 63.158 0.00 0.00 0.00 5.40
680 684 0.462759 GAGAGGATTGTTCTGCGGGG 60.463 60.000 0.00 0.00 0.00 5.73
682 686 3.181471 ACATAGAGAGGATTGTTCTGCGG 60.181 47.826 0.00 0.00 0.00 5.69
690 701 5.545723 AGGGGAATACACATAGAGAGGATTG 59.454 44.000 0.00 0.00 0.00 2.67
691 702 5.545723 CAGGGGAATACACATAGAGAGGATT 59.454 44.000 0.00 0.00 0.00 3.01
699 710 2.372172 GGGGACAGGGGAATACACATAG 59.628 54.545 0.00 0.00 0.00 2.23
701 712 1.222567 GGGGACAGGGGAATACACAT 58.777 55.000 0.00 0.00 0.00 3.21
797 823 3.736482 GAGCCGGAGTACAGCGTCG 62.736 68.421 5.05 0.00 0.00 5.12
812 851 1.049289 AACTATCGGGTCCAGGGAGC 61.049 60.000 9.00 9.00 41.42 4.70
830 869 1.815003 GAACGAACTAGGGTCGAGGAA 59.185 52.381 20.86 0.00 0.00 3.36
869 908 1.152567 CTGAGAGATCCCTCGGGCT 60.153 63.158 5.17 0.00 44.08 5.19
903 945 3.758300 CACAAAACAGCAAGAAGAACGT 58.242 40.909 0.00 0.00 0.00 3.99
949 991 3.793888 GAGAAATCCCGGGGCGGT 61.794 66.667 23.50 3.18 46.80 5.68
976 1018 0.960364 TGCAGCCACCCGAAGAATTC 60.960 55.000 0.00 0.00 43.09 2.17
1029 1071 8.669243 GGTGAGAGAAAATTTTGTATACCTGAG 58.331 37.037 8.47 0.00 0.00 3.35
1040 1082 3.826157 TGATGCGGGTGAGAGAAAATTTT 59.174 39.130 2.28 2.28 0.00 1.82
1041 1083 3.191371 GTGATGCGGGTGAGAGAAAATTT 59.809 43.478 0.00 0.00 0.00 1.82
1048 1090 0.036952 AAGTGTGATGCGGGTGAGAG 60.037 55.000 0.00 0.00 0.00 3.20
1055 1099 1.133025 GGGATGAAAAGTGTGATGCGG 59.867 52.381 0.00 0.00 0.00 5.69
1085 1129 1.669115 CTCACCGCACAAGGACCTG 60.669 63.158 0.00 0.00 34.73 4.00
1118 1162 1.104630 CTACCTCTCGAGTGGGTTCC 58.895 60.000 31.17 0.00 34.86 3.62
1121 1165 1.914798 ACTACTACCTCTCGAGTGGGT 59.085 52.381 31.17 28.52 37.16 4.51
1167 1215 1.153784 CGGGTGAAACATGCATGCC 60.154 57.895 26.53 17.91 39.98 4.40
1194 1242 2.233922 ACGATAGACACAGGGGTTTCAG 59.766 50.000 0.00 0.00 41.38 3.02
1271 1323 3.894759 ACTTAAGATGATGCAGCCATGT 58.105 40.909 10.09 2.84 0.00 3.21
1278 1330 8.896744 CCAAGATTAAGAACTTAAGATGATGCA 58.103 33.333 10.09 0.00 38.30 3.96
1280 1332 8.348507 GCCCAAGATTAAGAACTTAAGATGATG 58.651 37.037 10.09 7.05 38.30 3.07
1311 1363 5.769662 TCAAGGTTCAACTGCAGTCATAATT 59.230 36.000 21.95 8.47 0.00 1.40
1314 1366 4.065088 GTCAAGGTTCAACTGCAGTCATA 58.935 43.478 21.95 5.69 0.00 2.15
1328 1380 6.323739 ACAAATAATGTGAACCAGTCAAGGTT 59.676 34.615 0.00 0.00 44.17 3.50
1329 1381 5.833131 ACAAATAATGTGAACCAGTCAAGGT 59.167 36.000 0.00 0.00 42.09 3.50
1330 1382 6.331369 ACAAATAATGTGAACCAGTCAAGG 57.669 37.500 0.00 0.00 41.93 3.61
1331 1383 7.306749 GCAAACAAATAATGTGAACCAGTCAAG 60.307 37.037 0.00 0.00 42.99 3.02
1332 1384 6.478344 GCAAACAAATAATGTGAACCAGTCAA 59.522 34.615 0.00 0.00 42.99 3.18
1333 1385 5.982516 GCAAACAAATAATGTGAACCAGTCA 59.017 36.000 0.00 0.00 42.99 3.41
1334 1386 5.405269 GGCAAACAAATAATGTGAACCAGTC 59.595 40.000 0.00 0.00 42.99 3.51
1335 1387 5.070313 AGGCAAACAAATAATGTGAACCAGT 59.930 36.000 0.00 0.00 42.99 4.00
1336 1388 5.406175 CAGGCAAACAAATAATGTGAACCAG 59.594 40.000 0.00 0.00 42.99 4.00
1367 1419 6.458751 CGTCCTATCGCTACAAAGGTTAGTTA 60.459 42.308 0.00 0.00 0.00 2.24
1368 1420 5.658468 GTCCTATCGCTACAAAGGTTAGTT 58.342 41.667 0.00 0.00 0.00 2.24
1369 1421 4.201990 CGTCCTATCGCTACAAAGGTTAGT 60.202 45.833 0.00 0.00 0.00 2.24
1370 1422 4.201990 ACGTCCTATCGCTACAAAGGTTAG 60.202 45.833 0.00 0.00 0.00 2.34
1371 1423 3.696051 ACGTCCTATCGCTACAAAGGTTA 59.304 43.478 0.00 0.00 0.00 2.85
1427 1479 5.036737 GTCCCGTGAGCAAATTAATTGATG 58.963 41.667 0.39 0.00 41.85 3.07
1448 1500 7.349412 TCTTTAGGAACCAGCTATTCTAGTC 57.651 40.000 9.19 0.00 0.00 2.59
1497 1549 3.053619 ACCGGCTTCCAAGATATCCTTTT 60.054 43.478 0.00 0.00 31.42 2.27
1517 1569 7.173390 GGATGCATAAGGTTTCAACTAGATACC 59.827 40.741 0.00 0.00 45.54 2.73
1541 1593 6.914665 AGACATATTTGAATGGAATCAGGGA 58.085 36.000 0.00 0.00 0.00 4.20
1552 1604 5.677091 GCAACTCGGCAAGACATATTTGAAT 60.677 40.000 0.00 0.00 0.00 2.57
1612 1664 7.776969 ACATGATGTAAATCAATTACCTGAGCT 59.223 33.333 0.00 0.00 42.74 4.09
1699 1751 3.437052 GCAGAGGAATTGATACCCCCATT 60.437 47.826 0.00 0.00 0.00 3.16
1716 1768 3.247173 GTCTTGTCACAGTTTCAGCAGAG 59.753 47.826 0.00 0.00 0.00 3.35
1775 1827 7.704472 TGAACGAAACATTTAAGCTTGAACAAT 59.296 29.630 9.86 0.00 0.00 2.71
1786 1838 6.127980 TGTGTTGAGGTGAACGAAACATTTAA 60.128 34.615 0.00 0.00 33.75 1.52
1800 1852 3.480470 AGTTTCAGGATGTGTTGAGGTG 58.520 45.455 0.00 0.00 37.40 4.00
1823 1875 7.436673 GCTAATGACAAATATCAGAAGAGACGT 59.563 37.037 0.00 0.00 30.46 4.34
1825 1877 7.712639 TGGCTAATGACAAATATCAGAAGAGAC 59.287 37.037 0.00 0.00 30.46 3.36
1878 1930 5.791974 CACATTGTAAGAAGCTGACAAATCG 59.208 40.000 1.73 0.00 36.70 3.34
1908 1966 5.123820 TCAGACACTTTGGAACTTTTGAGTG 59.876 40.000 0.00 0.00 40.11 3.51
1980 2048 5.950965 ACTATATCAAGCAAACGACTTCG 57.049 39.130 0.00 0.00 46.33 3.79
2034 2102 4.040339 TGGCATCTACAGAAAGACACAGAA 59.960 41.667 0.00 0.00 0.00 3.02
2064 2132 8.778358 CAGGAATCTAGTTTGTAATCCTTATGC 58.222 37.037 0.00 0.00 33.68 3.14
2076 2144 7.323420 TCAGTATGTCACAGGAATCTAGTTTG 58.677 38.462 0.00 0.00 37.40 2.93
2109 2177 9.788960 GAAGAGTGGATTAAATAACCATGAAAC 57.211 33.333 0.00 0.00 36.09 2.78
2124 2208 5.732633 CTCATGAAGACTGAAGAGTGGATT 58.267 41.667 0.00 0.00 30.16 3.01
2200 2291 2.719426 AGCACCGTCACTACAGTAAC 57.281 50.000 0.00 0.00 0.00 2.50
2206 2297 0.456312 CTCCGAAGCACCGTCACTAC 60.456 60.000 0.00 0.00 0.00 2.73
2207 2298 1.880894 CTCCGAAGCACCGTCACTA 59.119 57.895 0.00 0.00 0.00 2.74
2208 2299 2.651361 CTCCGAAGCACCGTCACT 59.349 61.111 0.00 0.00 0.00 3.41
2217 2308 1.228657 ACAAAAGACCGCTCCGAAGC 61.229 55.000 0.00 0.00 45.56 3.86
2218 2309 1.069906 CAACAAAAGACCGCTCCGAAG 60.070 52.381 0.00 0.00 0.00 3.79
2219 2310 0.941542 CAACAAAAGACCGCTCCGAA 59.058 50.000 0.00 0.00 0.00 4.30
2220 2311 0.179067 ACAACAAAAGACCGCTCCGA 60.179 50.000 0.00 0.00 0.00 4.55
2221 2312 1.459592 CTACAACAAAAGACCGCTCCG 59.540 52.381 0.00 0.00 0.00 4.63
2222 2313 1.197036 GCTACAACAAAAGACCGCTCC 59.803 52.381 0.00 0.00 0.00 4.70
2223 2314 1.871039 TGCTACAACAAAAGACCGCTC 59.129 47.619 0.00 0.00 0.00 5.03
2224 2315 1.961793 TGCTACAACAAAAGACCGCT 58.038 45.000 0.00 0.00 0.00 5.52
2225 2316 2.414161 GGATGCTACAACAAAAGACCGC 60.414 50.000 0.00 0.00 0.00 5.68
2226 2317 3.074412 AGGATGCTACAACAAAAGACCG 58.926 45.455 0.00 0.00 0.00 4.79
2227 2318 3.821033 ACAGGATGCTACAACAAAAGACC 59.179 43.478 0.00 0.00 42.53 3.85
2228 2319 5.122396 CCTACAGGATGCTACAACAAAAGAC 59.878 44.000 0.00 0.00 42.53 3.01
2229 2320 5.221843 ACCTACAGGATGCTACAACAAAAGA 60.222 40.000 1.29 0.00 42.53 2.52
2230 2321 5.003804 ACCTACAGGATGCTACAACAAAAG 58.996 41.667 1.29 0.00 42.53 2.27
2231 2322 4.759693 CACCTACAGGATGCTACAACAAAA 59.240 41.667 1.29 0.00 42.53 2.44
2232 2323 4.323417 CACCTACAGGATGCTACAACAAA 58.677 43.478 1.29 0.00 42.53 2.83
2233 2324 3.868369 GCACCTACAGGATGCTACAACAA 60.868 47.826 1.29 0.00 42.53 2.83
2234 2325 2.354704 GCACCTACAGGATGCTACAACA 60.355 50.000 1.29 0.00 42.53 3.33
2235 2326 2.280628 GCACCTACAGGATGCTACAAC 58.719 52.381 1.29 0.00 42.53 3.32
2236 2327 1.905894 TGCACCTACAGGATGCTACAA 59.094 47.619 17.75 2.39 42.53 2.41
2237 2328 1.482182 CTGCACCTACAGGATGCTACA 59.518 52.381 17.75 4.08 42.53 2.74
2238 2329 1.482593 ACTGCACCTACAGGATGCTAC 59.517 52.381 17.75 0.00 42.53 3.58
2239 2330 1.757118 GACTGCACCTACAGGATGCTA 59.243 52.381 17.75 8.41 42.53 3.49
2240 2331 0.539051 GACTGCACCTACAGGATGCT 59.461 55.000 17.75 5.06 42.53 3.79
2241 2332 0.807667 CGACTGCACCTACAGGATGC 60.808 60.000 1.29 8.77 42.53 3.91
2242 2333 0.817654 TCGACTGCACCTACAGGATG 59.182 55.000 1.29 0.00 42.21 3.51
2243 2334 1.478510 CTTCGACTGCACCTACAGGAT 59.521 52.381 1.29 0.00 42.21 3.24
2244 2335 0.888619 CTTCGACTGCACCTACAGGA 59.111 55.000 1.29 0.00 42.21 3.86
2245 2336 0.603569 ACTTCGACTGCACCTACAGG 59.396 55.000 0.00 0.00 42.21 4.00
2246 2337 1.702886 CACTTCGACTGCACCTACAG 58.297 55.000 0.00 0.00 43.59 2.74
2247 2338 0.319555 GCACTTCGACTGCACCTACA 60.320 55.000 9.01 0.00 34.56 2.74
2248 2339 1.014564 GGCACTTCGACTGCACCTAC 61.015 60.000 14.59 0.00 36.27 3.18
2249 2340 1.185618 AGGCACTTCGACTGCACCTA 61.186 55.000 14.59 0.00 36.27 3.08
2250 2341 2.031163 GGCACTTCGACTGCACCT 59.969 61.111 14.59 0.00 36.27 4.00
2251 2342 2.029844 GAGGCACTTCGACTGCACC 61.030 63.158 14.59 0.28 41.55 5.01
2252 2343 0.880278 TTGAGGCACTTCGACTGCAC 60.880 55.000 14.59 9.19 41.55 4.57
2253 2344 0.601046 CTTGAGGCACTTCGACTGCA 60.601 55.000 14.59 0.00 41.55 4.41
2254 2345 0.319900 TCTTGAGGCACTTCGACTGC 60.320 55.000 5.81 5.81 41.55 4.40
2255 2346 1.998315 CATCTTGAGGCACTTCGACTG 59.002 52.381 0.00 0.00 41.55 3.51
2256 2347 1.620819 ACATCTTGAGGCACTTCGACT 59.379 47.619 0.00 0.00 41.55 4.18
2257 2348 2.086054 ACATCTTGAGGCACTTCGAC 57.914 50.000 0.00 0.00 41.55 4.20
2258 2349 2.166459 CCTACATCTTGAGGCACTTCGA 59.834 50.000 0.00 0.00 41.55 3.71
2259 2350 2.166459 TCCTACATCTTGAGGCACTTCG 59.834 50.000 0.00 0.00 41.55 3.79
2260 2351 3.196685 ACTCCTACATCTTGAGGCACTTC 59.803 47.826 0.00 0.00 41.55 3.01
2261 2352 3.177228 ACTCCTACATCTTGAGGCACTT 58.823 45.455 0.00 0.00 41.55 3.16
2263 2354 3.702045 ACTACTCCTACATCTTGAGGCAC 59.298 47.826 0.00 0.00 32.40 5.01
2264 2355 3.982516 ACTACTCCTACATCTTGAGGCA 58.017 45.455 0.00 0.00 32.40 4.75
2265 2356 5.346181 AAACTACTCCTACATCTTGAGGC 57.654 43.478 0.00 0.00 32.40 4.70
2290 2381 7.110043 TGCCTAACATATGCATCATGAAAAA 57.890 32.000 0.19 0.00 0.00 1.94
2291 2382 6.712179 TGCCTAACATATGCATCATGAAAA 57.288 33.333 0.19 0.00 0.00 2.29
2292 2383 6.904463 ATGCCTAACATATGCATCATGAAA 57.096 33.333 0.19 0.00 41.68 2.69
2300 2391 5.826601 TTTTTCGATGCCTAACATATGCA 57.173 34.783 1.58 0.00 39.84 3.96
2323 2414 9.778741 TGAATCAAGTTTCATACAGACTTAACT 57.221 29.630 0.00 0.00 32.69 2.24
2328 2419 8.834465 GCATATGAATCAAGTTTCATACAGACT 58.166 33.333 6.97 0.00 46.12 3.24
2329 2420 8.834465 AGCATATGAATCAAGTTTCATACAGAC 58.166 33.333 6.97 6.19 46.12 3.51
2330 2421 8.833493 CAGCATATGAATCAAGTTTCATACAGA 58.167 33.333 6.97 0.00 46.12 3.41
2331 2422 8.618677 ACAGCATATGAATCAAGTTTCATACAG 58.381 33.333 6.97 10.78 46.12 2.74
2332 2423 8.400186 CACAGCATATGAATCAAGTTTCATACA 58.600 33.333 6.97 0.00 46.12 2.29
2333 2424 8.615211 TCACAGCATATGAATCAAGTTTCATAC 58.385 33.333 6.97 5.22 46.12 2.39
2334 2425 8.615211 GTCACAGCATATGAATCAAGTTTCATA 58.385 33.333 6.97 13.14 46.87 2.15
2335 2426 7.338703 AGTCACAGCATATGAATCAAGTTTCAT 59.661 33.333 6.97 10.27 45.74 2.57
2336 2427 6.656270 AGTCACAGCATATGAATCAAGTTTCA 59.344 34.615 6.97 0.00 39.77 2.69
2337 2428 7.081526 AGTCACAGCATATGAATCAAGTTTC 57.918 36.000 6.97 0.00 0.00 2.78
2338 2429 6.094603 GGAGTCACAGCATATGAATCAAGTTT 59.905 38.462 6.97 0.00 41.75 2.66
2339 2430 5.587844 GGAGTCACAGCATATGAATCAAGTT 59.412 40.000 6.97 0.00 41.75 2.66
2340 2431 5.121811 GGAGTCACAGCATATGAATCAAGT 58.878 41.667 6.97 0.00 41.75 3.16
2341 2432 5.121105 TGGAGTCACAGCATATGAATCAAG 58.879 41.667 6.97 0.00 41.75 3.02
2342 2433 5.101648 TGGAGTCACAGCATATGAATCAA 57.898 39.130 6.97 1.21 41.75 2.57
2343 2434 4.758773 TGGAGTCACAGCATATGAATCA 57.241 40.909 6.97 0.00 41.75 2.57
2344 2435 6.630444 AAATGGAGTCACAGCATATGAATC 57.370 37.500 6.97 4.35 39.79 2.52
2345 2436 6.238566 CGAAAATGGAGTCACAGCATATGAAT 60.239 38.462 6.97 0.00 0.00 2.57
2346 2437 5.065090 CGAAAATGGAGTCACAGCATATGAA 59.935 40.000 6.97 0.00 0.00 2.57
2347 2438 4.571984 CGAAAATGGAGTCACAGCATATGA 59.428 41.667 6.97 0.00 0.00 2.15
2348 2439 4.333649 ACGAAAATGGAGTCACAGCATATG 59.666 41.667 0.00 0.00 0.00 1.78
2349 2440 4.517285 ACGAAAATGGAGTCACAGCATAT 58.483 39.130 0.00 0.00 0.00 1.78
2350 2441 3.937814 ACGAAAATGGAGTCACAGCATA 58.062 40.909 0.00 0.00 0.00 3.14
2351 2442 2.783135 ACGAAAATGGAGTCACAGCAT 58.217 42.857 0.00 0.00 0.00 3.79
2352 2443 2.254546 ACGAAAATGGAGTCACAGCA 57.745 45.000 0.00 0.00 0.00 4.41
2353 2444 4.391830 TCATTACGAAAATGGAGTCACAGC 59.608 41.667 12.90 0.00 0.00 4.40
2354 2445 6.480524 TTCATTACGAAAATGGAGTCACAG 57.519 37.500 12.90 0.00 0.00 3.66
2355 2446 6.869315 TTTCATTACGAAAATGGAGTCACA 57.131 33.333 12.90 0.00 40.70 3.58
2366 2457 2.498078 GGCCCCCATTTTCATTACGAAA 59.502 45.455 0.00 0.00 41.95 3.46
2367 2458 2.104170 GGCCCCCATTTTCATTACGAA 58.896 47.619 0.00 0.00 0.00 3.85
2368 2459 1.770294 GGCCCCCATTTTCATTACGA 58.230 50.000 0.00 0.00 0.00 3.43
2369 2460 0.383949 CGGCCCCCATTTTCATTACG 59.616 55.000 0.00 0.00 0.00 3.18
2370 2461 1.136110 CACGGCCCCCATTTTCATTAC 59.864 52.381 0.00 0.00 0.00 1.89
2371 2462 1.272760 ACACGGCCCCCATTTTCATTA 60.273 47.619 0.00 0.00 0.00 1.90
2372 2463 0.544120 ACACGGCCCCCATTTTCATT 60.544 50.000 0.00 0.00 0.00 2.57
2373 2464 1.078347 ACACGGCCCCCATTTTCAT 59.922 52.632 0.00 0.00 0.00 2.57
2374 2465 1.905843 CACACGGCCCCCATTTTCA 60.906 57.895 0.00 0.00 0.00 2.69
2375 2466 2.645192 CCACACGGCCCCCATTTTC 61.645 63.158 0.00 0.00 0.00 2.29
2376 2467 2.603171 CCACACGGCCCCCATTTT 60.603 61.111 0.00 0.00 0.00 1.82
2386 2477 3.391665 GATCAGAGGGGCCACACGG 62.392 68.421 8.31 0.42 0.00 4.94
2387 2478 2.187946 GATCAGAGGGGCCACACG 59.812 66.667 8.31 0.00 0.00 4.49
2388 2479 1.899437 TTCGATCAGAGGGGCCACAC 61.899 60.000 8.31 0.00 0.00 3.82
2389 2480 1.198094 TTTCGATCAGAGGGGCCACA 61.198 55.000 8.31 0.00 0.00 4.17
2390 2481 0.181350 ATTTCGATCAGAGGGGCCAC 59.819 55.000 4.39 0.00 0.00 5.01
2391 2482 1.801242 TATTTCGATCAGAGGGGCCA 58.199 50.000 4.39 0.00 0.00 5.36
2392 2483 2.930826 TTATTTCGATCAGAGGGGCC 57.069 50.000 0.00 0.00 0.00 5.80
2393 2484 6.877611 TTATTTTATTTCGATCAGAGGGGC 57.122 37.500 0.00 0.00 0.00 5.80
2572 2668 3.820467 TGATTTGCTGAAACCAGAACGAT 59.180 39.130 0.00 0.00 33.56 3.73
2650 2746 0.613260 ACTGTATGCACATGACCCGT 59.387 50.000 0.00 0.00 33.14 5.28
2692 2788 4.202609 CCAATTATCATGTCCCCTAGCCTT 60.203 45.833 0.00 0.00 0.00 4.35
2698 2794 4.230502 ACAGAACCAATTATCATGTCCCCT 59.769 41.667 0.00 0.00 0.00 4.79
2770 2866 2.515057 GCACGGACAACCACACCA 60.515 61.111 0.00 0.00 35.59 4.17
2806 2902 2.675423 ACCTCGCTGCCGTCACTA 60.675 61.111 0.00 0.00 35.54 2.74
2941 3037 5.182001 GTCTCAAACTATGTGTTCAGCCAAT 59.818 40.000 0.00 0.00 38.03 3.16
2999 3095 6.480981 GGAGCAATGTTAATTCCATTCCATTG 59.519 38.462 12.86 12.86 40.72 2.82
3000 3096 6.156602 TGGAGCAATGTTAATTCCATTCCATT 59.843 34.615 6.10 0.00 33.21 3.16
3027 3123 2.961741 TGCAGGGACAAGCAAAACATTA 59.038 40.909 0.00 0.00 38.58 1.90
3028 3124 1.761784 TGCAGGGACAAGCAAAACATT 59.238 42.857 0.00 0.00 38.58 2.71
3037 3133 1.271543 TGGAATGACTGCAGGGACAAG 60.272 52.381 19.93 0.00 0.00 3.16
3041 3137 0.842030 AGGTGGAATGACTGCAGGGA 60.842 55.000 19.93 3.74 0.00 4.20
3048 3144 3.117131 ACCAAAGGAAAGGTGGAATGACT 60.117 43.478 0.00 0.00 36.60 3.41
3050 3146 3.611025 ACCAAAGGAAAGGTGGAATGA 57.389 42.857 0.00 0.00 36.60 2.57
3152 3252 7.645340 GCGAAACATTCAGATTAAATGTGCTAT 59.355 33.333 2.53 0.00 44.44 2.97
3259 3360 9.477484 GATAGGACACCATGTAAATGTACTAAG 57.523 37.037 10.79 0.00 41.86 2.18
3306 3407 4.137543 GTGAAAATGGAAGTGTGTCCTCT 58.862 43.478 0.00 0.00 38.62 3.69
3314 3415 9.859427 ATGTTATATGTTGTGAAAATGGAAGTG 57.141 29.630 0.00 0.00 0.00 3.16
3421 3522 0.802222 ATGAGACACCGAATGACGCG 60.802 55.000 3.53 3.53 41.07 6.01
3423 3524 2.568696 AGATGAGACACCGAATGACG 57.431 50.000 0.00 0.00 42.18 4.35
3449 3552 6.831769 TCAATTTCTCGACATTTTAGCTCAC 58.168 36.000 0.00 0.00 0.00 3.51
3453 3556 6.021153 GCACATCAATTTCTCGACATTTTAGC 60.021 38.462 0.00 0.00 0.00 3.09
3557 3669 4.580868 CAGATCTCTGGCAGCATATTCAT 58.419 43.478 10.34 0.00 40.20 2.57
3601 3713 6.545298 AGATTCTGATTTGGAAGTTGGATAGC 59.455 38.462 0.00 0.00 0.00 2.97
3632 3748 8.991243 ATGTATTTGGACAAACTCATCAAATG 57.009 30.769 0.00 0.00 38.17 2.32
3657 3773 3.145286 TGGTCGATGCTGAATTTGTTGA 58.855 40.909 0.00 0.00 0.00 3.18
3702 3818 4.766891 CCAACTCCAAATGGACACACTATT 59.233 41.667 0.00 0.00 39.78 1.73
3712 3828 4.605640 AACACATTCCAACTCCAAATGG 57.394 40.909 0.00 0.00 35.24 3.16
3727 3843 9.995003 AATTGTAATGTATTTGGACAAACACAT 57.005 25.926 14.08 14.08 46.68 3.21
3731 3847 8.846607 GTCGAATTGTAATGTATTTGGACAAAC 58.153 33.333 0.00 0.00 33.99 2.93
3757 3873 2.286294 GCTGCTCATAAGTTGGTCGATG 59.714 50.000 0.00 0.00 0.00 3.84
3758 3874 2.169352 AGCTGCTCATAAGTTGGTCGAT 59.831 45.455 0.00 0.00 0.00 3.59
3759 3875 1.550524 AGCTGCTCATAAGTTGGTCGA 59.449 47.619 0.00 0.00 0.00 4.20
3760 3876 2.015736 AGCTGCTCATAAGTTGGTCG 57.984 50.000 0.00 0.00 0.00 4.79
3761 3877 4.333926 CCTTAAGCTGCTCATAAGTTGGTC 59.666 45.833 16.04 0.00 0.00 4.02
3762 3878 4.019321 TCCTTAAGCTGCTCATAAGTTGGT 60.019 41.667 16.04 0.00 0.00 3.67
3763 3879 4.517285 TCCTTAAGCTGCTCATAAGTTGG 58.483 43.478 16.04 6.14 0.00 3.77
3764 3880 6.094603 ACAATCCTTAAGCTGCTCATAAGTTG 59.905 38.462 16.04 15.82 0.00 3.16
3765 3881 6.183347 ACAATCCTTAAGCTGCTCATAAGTT 58.817 36.000 16.04 6.01 0.00 2.66
3766 3882 5.749462 ACAATCCTTAAGCTGCTCATAAGT 58.251 37.500 16.04 0.00 0.00 2.24
3767 3883 7.792374 TTACAATCCTTAAGCTGCTCATAAG 57.208 36.000 1.00 8.33 0.00 1.73
3768 3884 7.775093 ACATTACAATCCTTAAGCTGCTCATAA 59.225 33.333 1.00 0.00 0.00 1.90
3769 3885 7.282585 ACATTACAATCCTTAAGCTGCTCATA 58.717 34.615 1.00 0.00 0.00 2.15
3770 3886 6.125029 ACATTACAATCCTTAAGCTGCTCAT 58.875 36.000 1.00 0.00 0.00 2.90
3771 3887 5.500234 ACATTACAATCCTTAAGCTGCTCA 58.500 37.500 1.00 0.00 0.00 4.26
3772 3888 7.736447 ATACATTACAATCCTTAAGCTGCTC 57.264 36.000 1.00 0.00 0.00 4.26
3773 3889 8.408601 CAAATACATTACAATCCTTAAGCTGCT 58.591 33.333 0.00 0.00 0.00 4.24
3774 3890 7.649306 CCAAATACATTACAATCCTTAAGCTGC 59.351 37.037 0.00 0.00 0.00 5.25
3775 3891 8.902806 TCCAAATACATTACAATCCTTAAGCTG 58.097 33.333 0.00 0.00 0.00 4.24
3776 3892 9.646522 ATCCAAATACATTACAATCCTTAAGCT 57.353 29.630 0.00 0.00 0.00 3.74
3802 3918 9.665719 TTGAGTTGCTCATATGAACTATGTTTA 57.334 29.630 6.90 0.00 40.39 2.01
3808 3924 7.785033 TCTGATTGAGTTGCTCATATGAACTA 58.215 34.615 6.90 0.00 40.39 2.24
3852 3968 1.338674 TGTGTTAGGGCATCTCCAACG 60.339 52.381 0.00 0.00 36.21 4.10
3873 3989 7.761704 ACATGTACAGACAGATTCACTATGAAC 59.238 37.037 0.00 0.00 37.90 3.18
3920 4036 3.576982 AGTTGGACCACTAGTTCATTCGA 59.423 43.478 0.00 0.00 32.50 3.71
3925 4041 2.037251 GCTCAGTTGGACCACTAGTTCA 59.963 50.000 0.00 0.00 29.34 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.