Multiple sequence alignment - TraesCS5D01G039400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G039400 chr5D 100.000 4995 0 0 1 4995 40714724 40719718 0.000000e+00 9225.0
1 TraesCS5D01G039400 chr5D 89.377 1751 139 20 1022 2749 40923507 40921781 0.000000e+00 2159.0
2 TraesCS5D01G039400 chr5D 79.081 1654 257 44 997 2612 40914983 40916585 0.000000e+00 1055.0
3 TraesCS5D01G039400 chr5D 84.758 269 22 8 3191 3446 40921605 40921343 8.300000e-63 252.0
4 TraesCS5D01G039400 chr5D 85.714 168 23 1 4242 4408 40784060 40783893 5.140000e-40 176.0
5 TraesCS5D01G039400 chr5D 93.750 96 2 3 4623 4715 528145870 528145964 1.870000e-29 141.0
6 TraesCS5D01G039400 chr5D 91.667 72 6 0 4924 4995 449619346 449619275 3.180000e-17 100.0
7 TraesCS5D01G039400 chr5D 91.667 72 6 0 4924 4995 449625457 449625386 3.180000e-17 100.0
8 TraesCS5D01G039400 chr5A 93.473 2712 112 24 715 3363 28696961 28699670 0.000000e+00 3967.0
9 TraesCS5D01G039400 chr5A 88.240 1165 104 22 1755 2897 29125915 29124762 0.000000e+00 1362.0
10 TraesCS5D01G039400 chr5A 90.855 678 51 5 3534 4210 28699891 28700558 0.000000e+00 898.0
11 TraesCS5D01G039400 chr5A 90.333 631 52 7 997 1627 29126537 29125916 0.000000e+00 819.0
12 TraesCS5D01G039400 chr5A 81.963 815 114 15 1782 2581 29119037 29119833 0.000000e+00 660.0
13 TraesCS5D01G039400 chr5A 90.566 212 17 2 4708 4918 28701272 28701481 1.370000e-70 278.0
14 TraesCS5D01G039400 chr5A 83.618 293 28 10 1159 1451 28113707 28113435 1.780000e-64 257.0
15 TraesCS5D01G039400 chr5A 83.212 274 27 8 3186 3446 29124613 29124346 3.010000e-57 233.0
16 TraesCS5D01G039400 chr5A 79.939 329 41 10 4230 4542 29123823 29123504 8.420000e-53 219.0
17 TraesCS5D01G039400 chr5A 91.429 105 9 0 3355 3459 28699698 28699802 1.450000e-30 145.0
18 TraesCS5D01G039400 chr5A 94.048 84 5 0 4545 4628 28701189 28701272 1.460000e-25 128.0
19 TraesCS5D01G039400 chr5A 90.541 74 6 1 4921 4993 648505416 648505489 4.120000e-16 97.1
20 TraesCS5D01G039400 chr5B 92.286 2774 132 34 715 3459 34038339 34041059 0.000000e+00 3862.0
21 TraesCS5D01G039400 chr5B 91.788 2533 122 26 941 3453 34249601 34252067 0.000000e+00 3446.0
22 TraesCS5D01G039400 chr5B 89.402 1774 144 21 997 2753 34768390 34766644 0.000000e+00 2194.0
23 TraesCS5D01G039400 chr5B 91.561 1185 74 15 3460 4626 34041181 34042357 0.000000e+00 1611.0
24 TraesCS5D01G039400 chr5B 93.885 785 43 4 3477 4259 34252182 34252963 0.000000e+00 1179.0
25 TraesCS5D01G039400 chr5B 78.478 1682 262 50 997 2631 34742672 34744300 0.000000e+00 1009.0
26 TraesCS5D01G039400 chr5B 83.842 557 71 16 186 731 34248775 34249323 3.450000e-141 512.0
27 TraesCS5D01G039400 chr5B 83.662 557 71 16 186 731 34037760 34038307 1.600000e-139 507.0
28 TraesCS5D01G039400 chr5B 79.966 594 111 4 1306 1899 34726548 34727133 9.930000e-117 431.0
29 TraesCS5D01G039400 chr5B 82.197 528 53 20 2397 2897 34766644 34766131 2.780000e-112 416.0
30 TraesCS5D01G039400 chr5B 84.074 270 28 6 3186 3446 34765990 34765727 3.860000e-61 246.0
31 TraesCS5D01G039400 chr5B 86.111 180 20 5 4744 4920 34042354 34042531 6.600000e-44 189.0
32 TraesCS5D01G039400 chr5B 94.253 87 5 0 97 183 34247564 34247650 3.140000e-27 134.0
33 TraesCS5D01G039400 chr3B 85.000 320 41 4 2290 2602 754378574 754378893 8.070000e-83 318.0
34 TraesCS5D01G039400 chr3B 83.577 274 26 8 3186 3446 754379845 754380112 6.460000e-59 239.0
35 TraesCS5D01G039400 chr3B 86.207 203 24 4 2698 2897 754379500 754379701 3.030000e-52 217.0
36 TraesCS5D01G039400 chr3B 96.552 87 1 2 4627 4712 284678927 284678842 5.210000e-30 143.0
37 TraesCS5D01G039400 chr3B 91.837 98 4 3 4623 4719 456069959 456070053 3.140000e-27 134.0
38 TraesCS5D01G039400 chr3B 92.391 92 5 2 4621 4711 200860773 200860683 4.060000e-26 130.0
39 TraesCS5D01G039400 chr4B 79.259 270 22 18 2497 2749 628583287 628583539 1.860000e-34 158.0
40 TraesCS5D01G039400 chr3D 95.402 87 2 2 4627 4712 206978512 206978597 2.430000e-28 137.0
41 TraesCS5D01G039400 chr2D 94.444 90 3 2 4623 4711 75255014 75255102 2.430000e-28 137.0
42 TraesCS5D01G039400 chr2B 92.632 95 5 2 4621 4714 354879215 354879122 8.720000e-28 135.0
43 TraesCS5D01G039400 chr2B 86.486 74 9 1 4921 4993 57690028 57689955 4.150000e-11 80.5
44 TraesCS5D01G039400 chr4D 89.720 107 8 3 4615 4720 64347350 64347454 3.140000e-27 134.0
45 TraesCS5D01G039400 chr4D 97.333 75 2 0 4921 4995 25366989 25367063 1.460000e-25 128.0
46 TraesCS5D01G039400 chr4D 97.333 75 2 0 4921 4995 25373478 25373552 1.460000e-25 128.0
47 TraesCS5D01G039400 chr2A 91.579 95 6 2 4618 4711 361381610 361381703 4.060000e-26 130.0
48 TraesCS5D01G039400 chrUn 84.932 73 11 0 4921 4993 122086296 122086224 1.930000e-09 75.0
49 TraesCS5D01G039400 chr4A 85.135 74 10 1 4921 4993 625204613 625204540 1.930000e-09 75.0
50 TraesCS5D01G039400 chr1B 85.135 74 10 1 4921 4993 42163675 42163602 1.930000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G039400 chr5D 40714724 40719718 4994 False 9225.00 9225 100.000000 1 4995 1 chr5D.!!$F1 4994
1 TraesCS5D01G039400 chr5D 40921343 40923507 2164 True 1205.50 2159 87.067500 1022 3446 2 chr5D.!!$R4 2424
2 TraesCS5D01G039400 chr5D 40914983 40916585 1602 False 1055.00 1055 79.081000 997 2612 1 chr5D.!!$F2 1615
3 TraesCS5D01G039400 chr5A 28696961 28701481 4520 False 1083.20 3967 92.074200 715 4918 5 chr5A.!!$F3 4203
4 TraesCS5D01G039400 chr5A 29119037 29119833 796 False 660.00 660 81.963000 1782 2581 1 chr5A.!!$F1 799
5 TraesCS5D01G039400 chr5A 29123504 29126537 3033 True 658.25 1362 85.431000 997 4542 4 chr5A.!!$R2 3545
6 TraesCS5D01G039400 chr5B 34037760 34042531 4771 False 1542.25 3862 88.405000 186 4920 4 chr5B.!!$F3 4734
7 TraesCS5D01G039400 chr5B 34247564 34252963 5399 False 1317.75 3446 90.942000 97 4259 4 chr5B.!!$F4 4162
8 TraesCS5D01G039400 chr5B 34742672 34744300 1628 False 1009.00 1009 78.478000 997 2631 1 chr5B.!!$F2 1634
9 TraesCS5D01G039400 chr5B 34765727 34768390 2663 True 952.00 2194 85.224333 997 3446 3 chr5B.!!$R1 2449
10 TraesCS5D01G039400 chr5B 34726548 34727133 585 False 431.00 431 79.966000 1306 1899 1 chr5B.!!$F1 593
11 TraesCS5D01G039400 chr3B 754378574 754380112 1538 False 258.00 318 84.928000 2290 3446 3 chr3B.!!$F2 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.036388 ACCGGCAACCACATCAGTAG 60.036 55.0 0.00 0.0 0.0 2.57 F
281 1405 0.108963 CACAACCCTAACGAACCCCA 59.891 55.0 0.00 0.0 0.0 4.96 F
282 1406 0.109153 ACAACCCTAACGAACCCCAC 59.891 55.0 0.00 0.0 0.0 4.61 F
283 1407 0.399075 CAACCCTAACGAACCCCACT 59.601 55.0 0.00 0.0 0.0 4.00 F
1590 2860 0.622665 CCTTGTGCTCCTCCCTTGAT 59.377 55.0 0.00 0.0 0.0 2.57 F
1703 2982 0.747283 CCTTGTCCTGCTCCTGATGC 60.747 60.0 0.00 0.0 0.0 3.91 F
2435 3747 1.191535 CTTACCATGGACGAGGGACA 58.808 55.0 21.47 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 2958 0.768221 AGGAGCAGGACAAGGGACAA 60.768 55.000 0.00 0.0 0.00 3.18 R
1761 3040 1.379916 CTGATGGGTCACCTTGGCA 59.620 57.895 0.00 0.0 37.76 4.92 R
2344 3653 0.593128 CCAGTGGAACGAAAAGCAGG 59.407 55.000 1.68 0.0 45.86 4.85 R
2427 3739 0.172578 TTCGCTGTATGTGTCCCTCG 59.827 55.000 0.00 0.0 0.00 4.63 R
3101 5362 0.179032 ATTCACACCGCAGACCACAA 60.179 50.000 0.00 0.0 0.00 3.33 R
3690 6204 1.968017 CGCACTGGTTCTGCCACAT 60.968 57.895 0.00 0.0 43.61 3.21 R
4255 6775 0.815734 GCTTCAGGCATCAGCAACAT 59.184 50.000 0.00 0.0 44.61 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.788227 ATAGCAGAAAACCCACTGTGA 57.212 42.857 9.86 0.00 36.62 3.58
22 23 1.972872 AGCAGAAAACCCACTGTGAG 58.027 50.000 9.86 0.00 36.62 3.51
23 24 1.212935 AGCAGAAAACCCACTGTGAGT 59.787 47.619 9.86 0.00 36.62 3.41
24 25 1.334869 GCAGAAAACCCACTGTGAGTG 59.665 52.381 9.86 0.00 45.53 3.51
36 37 4.897509 ACTGTGAGTGATCTCCATTGAA 57.102 40.909 0.00 0.00 39.75 2.69
37 38 4.829968 ACTGTGAGTGATCTCCATTGAAG 58.170 43.478 0.00 0.00 39.75 3.02
38 39 3.603532 TGTGAGTGATCTCCATTGAAGC 58.396 45.455 0.00 0.00 39.75 3.86
39 40 3.262660 TGTGAGTGATCTCCATTGAAGCT 59.737 43.478 0.00 0.00 39.75 3.74
40 41 4.467438 TGTGAGTGATCTCCATTGAAGCTA 59.533 41.667 0.00 0.00 39.75 3.32
41 42 5.129980 TGTGAGTGATCTCCATTGAAGCTAT 59.870 40.000 0.00 0.00 39.75 2.97
42 43 5.466058 GTGAGTGATCTCCATTGAAGCTATG 59.534 44.000 0.00 0.00 39.75 2.23
43 44 4.970711 AGTGATCTCCATTGAAGCTATGG 58.029 43.478 7.58 7.58 43.22 2.74
56 57 0.378610 GCTATGGAGCGAAACCTTGC 59.621 55.000 0.00 0.00 39.39 4.01
57 58 2.014068 GCTATGGAGCGAAACCTTGCT 61.014 52.381 0.00 0.00 45.90 3.91
58 59 2.741878 GCTATGGAGCGAAACCTTGCTA 60.742 50.000 0.00 0.00 42.60 3.49
59 60 1.739067 ATGGAGCGAAACCTTGCTAC 58.261 50.000 0.00 0.00 42.60 3.58
60 61 0.321298 TGGAGCGAAACCTTGCTACC 60.321 55.000 0.00 0.00 41.55 3.18
61 62 0.321298 GGAGCGAAACCTTGCTACCA 60.321 55.000 0.00 0.00 42.60 3.25
62 63 0.796927 GAGCGAAACCTTGCTACCAC 59.203 55.000 0.00 0.00 42.60 4.16
63 64 0.605589 AGCGAAACCTTGCTACCACC 60.606 55.000 0.00 0.00 40.28 4.61
64 65 1.908066 GCGAAACCTTGCTACCACCG 61.908 60.000 0.00 0.00 0.00 4.94
65 66 1.296056 CGAAACCTTGCTACCACCGG 61.296 60.000 0.00 0.00 0.00 5.28
66 67 1.583495 GAAACCTTGCTACCACCGGC 61.583 60.000 0.00 0.00 0.00 6.13
67 68 2.346284 AAACCTTGCTACCACCGGCA 62.346 55.000 0.00 0.00 36.62 5.69
68 69 2.033448 CCTTGCTACCACCGGCAA 59.967 61.111 0.00 0.00 44.64 4.52
69 70 2.332654 CCTTGCTACCACCGGCAAC 61.333 63.158 0.00 0.00 42.45 4.17
70 71 2.281900 TTGCTACCACCGGCAACC 60.282 61.111 0.00 0.00 42.45 3.77
71 72 3.121406 TTGCTACCACCGGCAACCA 62.121 57.895 0.00 0.00 42.45 3.67
72 73 3.053896 GCTACCACCGGCAACCAC 61.054 66.667 0.00 0.00 0.00 4.16
73 74 2.428187 CTACCACCGGCAACCACA 59.572 61.111 0.00 0.00 0.00 4.17
74 75 1.002624 CTACCACCGGCAACCACAT 60.003 57.895 0.00 0.00 0.00 3.21
75 76 1.003112 TACCACCGGCAACCACATC 60.003 57.895 0.00 0.00 0.00 3.06
76 77 1.769716 TACCACCGGCAACCACATCA 61.770 55.000 0.00 0.00 0.00 3.07
77 78 2.334946 CCACCGGCAACCACATCAG 61.335 63.158 0.00 0.00 0.00 2.90
78 79 1.600636 CACCGGCAACCACATCAGT 60.601 57.895 0.00 0.00 0.00 3.41
79 80 0.321210 CACCGGCAACCACATCAGTA 60.321 55.000 0.00 0.00 0.00 2.74
80 81 0.036388 ACCGGCAACCACATCAGTAG 60.036 55.000 0.00 0.00 0.00 2.57
81 82 0.249120 CCGGCAACCACATCAGTAGA 59.751 55.000 0.00 0.00 0.00 2.59
82 83 1.645034 CGGCAACCACATCAGTAGAG 58.355 55.000 0.00 0.00 0.00 2.43
83 84 1.066858 CGGCAACCACATCAGTAGAGT 60.067 52.381 0.00 0.00 0.00 3.24
84 85 2.612972 CGGCAACCACATCAGTAGAGTT 60.613 50.000 0.00 0.00 0.00 3.01
85 86 3.003480 GGCAACCACATCAGTAGAGTTC 58.997 50.000 0.00 0.00 0.00 3.01
86 87 3.557054 GGCAACCACATCAGTAGAGTTCA 60.557 47.826 0.00 0.00 0.00 3.18
87 88 4.065088 GCAACCACATCAGTAGAGTTCAA 58.935 43.478 0.00 0.00 0.00 2.69
88 89 4.697352 GCAACCACATCAGTAGAGTTCAAT 59.303 41.667 0.00 0.00 0.00 2.57
89 90 5.874810 GCAACCACATCAGTAGAGTTCAATA 59.125 40.000 0.00 0.00 0.00 1.90
90 91 6.036517 GCAACCACATCAGTAGAGTTCAATAG 59.963 42.308 0.00 0.00 0.00 1.73
91 92 7.323420 CAACCACATCAGTAGAGTTCAATAGA 58.677 38.462 0.00 0.00 0.00 1.98
92 93 7.106439 ACCACATCAGTAGAGTTCAATAGAG 57.894 40.000 0.00 0.00 0.00 2.43
93 94 6.665680 ACCACATCAGTAGAGTTCAATAGAGT 59.334 38.462 0.00 0.00 0.00 3.24
94 95 7.834681 ACCACATCAGTAGAGTTCAATAGAGTA 59.165 37.037 0.00 0.00 0.00 2.59
95 96 8.349245 CCACATCAGTAGAGTTCAATAGAGTAG 58.651 40.741 0.00 0.00 0.00 2.57
96 97 9.114952 CACATCAGTAGAGTTCAATAGAGTAGA 57.885 37.037 0.00 0.00 0.00 2.59
97 98 9.337396 ACATCAGTAGAGTTCAATAGAGTAGAG 57.663 37.037 0.00 0.00 0.00 2.43
98 99 9.554395 CATCAGTAGAGTTCAATAGAGTAGAGA 57.446 37.037 0.00 0.00 0.00 3.10
100 101 9.961264 TCAGTAGAGTTCAATAGAGTAGAGAAA 57.039 33.333 0.00 0.00 0.00 2.52
103 104 9.791820 GTAGAGTTCAATAGAGTAGAGAAAACC 57.208 37.037 0.00 0.00 0.00 3.27
104 105 8.423906 AGAGTTCAATAGAGTAGAGAAAACCA 57.576 34.615 0.00 0.00 0.00 3.67
172 173 6.869315 TTCGTGGATGACTCAAATTGTTTA 57.131 33.333 0.00 0.00 0.00 2.01
183 184 7.054491 ACTCAAATTGTTTAAGGCAAGACAT 57.946 32.000 0.00 0.00 0.00 3.06
184 185 6.925165 ACTCAAATTGTTTAAGGCAAGACATG 59.075 34.615 0.00 0.00 0.00 3.21
191 1314 6.446318 TGTTTAAGGCAAGACATGTGAAATC 58.554 36.000 1.15 0.00 0.00 2.17
211 1334 2.639347 TCTGATGAGTTGCTCCCTCAAA 59.361 45.455 4.97 0.00 41.93 2.69
220 1343 4.016444 GTTGCTCCCTCAAATCCACAATA 58.984 43.478 0.00 0.00 0.00 1.90
224 1347 4.626287 GCTCCCTCAAATCCACAATACAGA 60.626 45.833 0.00 0.00 0.00 3.41
226 1349 5.886609 TCCCTCAAATCCACAATACAGAAA 58.113 37.500 0.00 0.00 0.00 2.52
227 1350 6.310941 TCCCTCAAATCCACAATACAGAAAA 58.689 36.000 0.00 0.00 0.00 2.29
228 1351 6.208599 TCCCTCAAATCCACAATACAGAAAAC 59.791 38.462 0.00 0.00 0.00 2.43
229 1352 6.015519 CCCTCAAATCCACAATACAGAAAACA 60.016 38.462 0.00 0.00 0.00 2.83
230 1353 7.086376 CCTCAAATCCACAATACAGAAAACAG 58.914 38.462 0.00 0.00 0.00 3.16
236 1359 9.747898 AATCCACAATACAGAAAACAGGTTATA 57.252 29.630 0.00 0.00 0.00 0.98
241 1364 9.436957 ACAATACAGAAAACAGGTTATAGTGAG 57.563 33.333 0.00 0.00 0.00 3.51
244 1367 7.730364 ACAGAAAACAGGTTATAGTGAGTTG 57.270 36.000 0.00 0.00 0.00 3.16
248 1371 2.093658 ACAGGTTATAGTGAGTTGGGCG 60.094 50.000 0.00 0.00 0.00 6.13
277 1401 3.368843 CGGATTACACAACCCTAACGAAC 59.631 47.826 0.00 0.00 0.00 3.95
281 1405 0.108963 CACAACCCTAACGAACCCCA 59.891 55.000 0.00 0.00 0.00 4.96
282 1406 0.109153 ACAACCCTAACGAACCCCAC 59.891 55.000 0.00 0.00 0.00 4.61
283 1407 0.399075 CAACCCTAACGAACCCCACT 59.601 55.000 0.00 0.00 0.00 4.00
290 1414 3.400054 CGAACCCCACTCCCCTCC 61.400 72.222 0.00 0.00 0.00 4.30
292 1416 3.552911 AACCCCACTCCCCTCCCT 61.553 66.667 0.00 0.00 0.00 4.20
293 1417 3.891432 AACCCCACTCCCCTCCCTG 62.891 68.421 0.00 0.00 0.00 4.45
294 1418 4.024984 CCCCACTCCCCTCCCTGA 62.025 72.222 0.00 0.00 0.00 3.86
305 1429 1.484038 CCTCCCTGACTCCTCTTCTG 58.516 60.000 0.00 0.00 0.00 3.02
374 1504 2.398588 TCGATCCATTTGCTCCTAGGT 58.601 47.619 9.08 0.00 0.00 3.08
381 1511 3.562176 CCATTTGCTCCTAGGTCTTTGGT 60.562 47.826 9.08 0.00 0.00 3.67
382 1512 2.859165 TTGCTCCTAGGTCTTTGGTG 57.141 50.000 9.08 0.00 0.00 4.17
402 1532 3.085296 GCCATTGCCAGCCCCAAT 61.085 61.111 0.00 0.00 33.41 3.16
404 1534 2.904905 CATTGCCAGCCCCAATGG 59.095 61.111 11.62 0.00 43.51 3.16
422 1552 2.919494 GCAAGGCCAAGACCAACCG 61.919 63.158 5.01 0.00 0.00 4.44
438 1568 4.720273 ACCAACCGTCTCCTAAGGATTTAT 59.280 41.667 0.00 0.00 0.00 1.40
448 1578 9.457436 GTCTCCTAAGGATTTATTGGTTTAACA 57.543 33.333 0.00 0.00 0.00 2.41
499 1629 5.670149 TTTAGGTGTCGCGTTTATTTTGA 57.330 34.783 5.77 0.00 0.00 2.69
508 1638 8.260550 GTGTCGCGTTTATTTTGAAATGTTAAA 58.739 29.630 5.77 0.00 0.00 1.52
515 1645 9.824534 GTTTATTTTGAAATGTTAAATGGCCAG 57.175 29.630 13.05 0.00 0.00 4.85
528 1658 2.562912 GCCAGCACCAACATGACG 59.437 61.111 0.00 0.00 0.00 4.35
566 1696 4.870426 TCGCAAGCCTATCTAACTCAAAAG 59.130 41.667 0.00 0.00 37.18 2.27
572 1702 4.261363 GCCTATCTAACTCAAAAGGCATGC 60.261 45.833 9.90 9.90 46.95 4.06
573 1703 4.883585 CCTATCTAACTCAAAAGGCATGCA 59.116 41.667 21.36 0.00 0.00 3.96
581 1711 5.439721 ACTCAAAAGGCATGCACTCATATA 58.560 37.500 21.36 0.00 0.00 0.86
597 1727 6.372659 CACTCATATAGCCCATCACATTTACC 59.627 42.308 0.00 0.00 0.00 2.85
691 1824 7.912773 GTGAAAGAAAAGGACAAAAGAAGAGAG 59.087 37.037 0.00 0.00 0.00 3.20
703 1836 8.744568 ACAAAAGAAGAGAGAAAACAGAGATT 57.255 30.769 0.00 0.00 0.00 2.40
753 1931 8.416329 CAATCCTATAGAACAAAAGGGAAATGG 58.584 37.037 0.00 0.00 0.00 3.16
858 2076 8.786826 AAAAAGGAAAAAGGAAACAAGTAAGG 57.213 30.769 0.00 0.00 0.00 2.69
906 2124 9.891828 AAAAAGATGGTCAAAACAAAGAAAAAC 57.108 25.926 0.00 0.00 0.00 2.43
1029 2283 3.890936 GAGAGCCAACGCCAGCACT 62.891 63.158 0.00 0.00 34.57 4.40
1137 2391 1.513158 CAAGATCGAGCTCCACCGT 59.487 57.895 2.43 0.00 0.00 4.83
1370 2633 1.661463 TGCTTCTTCCCTCACCTCAT 58.339 50.000 0.00 0.00 0.00 2.90
1509 2779 2.775856 CGCCCTCAAGCTCGCTCTA 61.776 63.158 0.00 0.00 0.00 2.43
1587 2857 0.768221 TGTCCTTGTGCTCCTCCCTT 60.768 55.000 0.00 0.00 0.00 3.95
1590 2860 0.622665 CCTTGTGCTCCTCCCTTGAT 59.377 55.000 0.00 0.00 0.00 2.57
1679 2958 2.362120 GGCCAAGCAGATGCCAGT 60.362 61.111 0.00 0.00 44.70 4.00
1703 2982 0.747283 CCTTGTCCTGCTCCTGATGC 60.747 60.000 0.00 0.00 0.00 3.91
1761 3040 2.805353 CGTCGCAGTAAGCACGCT 60.805 61.111 0.00 0.00 46.13 5.07
2344 3653 1.747355 AGCTTGCCATGCTATTGTCAC 59.253 47.619 2.84 0.00 39.21 3.67
2425 3737 2.561569 GACGGTTCCATCTTACCATGG 58.438 52.381 11.19 11.19 44.45 3.66
2435 3747 1.191535 CTTACCATGGACGAGGGACA 58.808 55.000 21.47 0.00 0.00 4.02
2541 3856 8.068733 AGTTAGTTTATCCCTCAGATACCTCTT 58.931 37.037 0.00 0.00 37.18 2.85
2802 5016 7.995663 AGCCCATAATGTCCATTTAGGTATTA 58.004 34.615 0.00 0.00 39.02 0.98
2899 5119 5.518848 TTGTTTGAGTGCATGATTTGAGT 57.481 34.783 0.00 0.00 0.00 3.41
2928 5148 3.914713 CCAAGGGGTTGGGTGGCT 61.915 66.667 0.00 0.00 38.42 4.75
2990 5225 7.429633 GCAAATAAGTAGTGCTCTATGAGAGA 58.570 38.462 7.68 0.00 45.07 3.10
3091 5352 5.059833 CCATCTTATAGGAACAAGCCTGTC 58.940 45.833 0.00 0.00 39.08 3.51
3101 5362 1.350351 ACAAGCCTGTCATCAGCTTCT 59.650 47.619 0.00 0.00 40.09 2.85
3388 5688 6.321848 TCCCGTTCTTTTGTTTAAGATTCC 57.678 37.500 0.00 0.00 34.33 3.01
3459 5785 3.838317 ACCACACACGGCTATCCATATAT 59.162 43.478 0.00 0.00 0.00 0.86
3460 5786 5.020795 ACCACACACGGCTATCCATATATA 58.979 41.667 0.00 0.00 0.00 0.86
3461 5787 5.661312 ACCACACACGGCTATCCATATATAT 59.339 40.000 0.00 0.00 0.00 0.86
3462 5788 6.837048 ACCACACACGGCTATCCATATATATA 59.163 38.462 0.00 0.00 0.00 0.86
3463 5789 7.509318 ACCACACACGGCTATCCATATATATAT 59.491 37.037 0.00 0.00 0.00 0.86
3464 5790 9.020731 CCACACACGGCTATCCATATATATATA 57.979 37.037 4.90 4.92 0.00 0.86
3509 5956 3.764434 TGATAGACTCACAGTCCTTGGAC 59.236 47.826 11.59 11.59 46.18 4.02
3510 5957 2.390225 AGACTCACAGTCCTTGGACT 57.610 50.000 15.93 15.93 46.18 3.85
3556 6004 5.775686 ACACACAATCAATTCACCAGAATG 58.224 37.500 0.00 0.00 43.52 2.67
3631 6144 3.192541 ACCAATGTTGCCCTTTTTGTC 57.807 42.857 0.00 0.00 0.00 3.18
3639 6152 1.407258 TGCCCTTTTTGTCGTTGGAAG 59.593 47.619 0.00 0.00 0.00 3.46
3640 6153 1.407618 GCCCTTTTTGTCGTTGGAAGT 59.592 47.619 0.00 0.00 0.00 3.01
3679 6193 6.925610 TCCATGCTGTGATTACTAATTGTC 57.074 37.500 0.00 0.00 0.00 3.18
3690 6204 7.222031 GTGATTACTAATTGTCGTCTGCATACA 59.778 37.037 2.93 0.00 0.00 2.29
3871 6385 8.887036 ATGACAATGATCGCATACTAACTAAA 57.113 30.769 0.00 0.00 33.44 1.85
3905 6419 0.038166 AAACACTGTGGCCGATGGAT 59.962 50.000 13.09 0.00 0.00 3.41
3970 6484 1.191535 AGGAATCCGACGGTCATGAA 58.808 50.000 14.79 0.00 0.00 2.57
4024 6538 1.304713 ACGGTGAGGGGTGTCGTAT 60.305 57.895 0.00 0.00 32.03 3.06
4066 6580 8.517062 TCCTCGATTAAGTAGTAGCTAGTTTT 57.483 34.615 6.36 5.00 32.61 2.43
4304 6824 3.374764 AGTTTTTCTGCCCCTTTGAACT 58.625 40.909 0.00 0.00 0.00 3.01
4324 6848 1.694150 TCTGTGGTCCTTTGGTCTCTG 59.306 52.381 0.00 0.00 0.00 3.35
4437 6969 1.816183 CGTGTTTCCCCCAACTTGCTA 60.816 52.381 0.00 0.00 0.00 3.49
4452 6990 2.770164 TGCTACCTCTCTTTTCCAGC 57.230 50.000 0.00 0.00 0.00 4.85
4573 7389 7.010771 TGTTGGCTAGTCCTACAGATATACAT 58.989 38.462 13.41 0.00 43.87 2.29
4606 7422 1.482593 AGGATCTTGCTAAGTCACCCG 59.517 52.381 0.00 0.00 0.00 5.28
4629 7445 5.632347 CGTAGTGGTTTCGATGAAAAGTACT 59.368 40.000 0.00 0.00 33.14 2.73
4630 7446 6.183359 CGTAGTGGTTTCGATGAAAAGTACTC 60.183 42.308 0.00 0.00 33.14 2.59
4631 7447 4.995487 AGTGGTTTCGATGAAAAGTACTCC 59.005 41.667 0.00 0.00 33.14 3.85
4632 7448 4.153655 GTGGTTTCGATGAAAAGTACTCCC 59.846 45.833 0.00 0.00 33.14 4.30
4633 7449 4.041198 TGGTTTCGATGAAAAGTACTCCCT 59.959 41.667 0.00 0.00 33.14 4.20
4634 7450 4.630505 GGTTTCGATGAAAAGTACTCCCTC 59.369 45.833 0.00 0.00 33.14 4.30
4635 7451 4.467198 TTCGATGAAAAGTACTCCCTCC 57.533 45.455 0.00 0.00 0.00 4.30
4636 7452 2.426024 TCGATGAAAAGTACTCCCTCCG 59.574 50.000 0.00 0.00 0.00 4.63
4637 7453 2.165845 CGATGAAAAGTACTCCCTCCGT 59.834 50.000 0.00 0.00 0.00 4.69
4638 7454 3.379372 CGATGAAAAGTACTCCCTCCGTA 59.621 47.826 0.00 0.00 0.00 4.02
4639 7455 4.142315 CGATGAAAAGTACTCCCTCCGTAA 60.142 45.833 0.00 0.00 0.00 3.18
4640 7456 5.622914 CGATGAAAAGTACTCCCTCCGTAAA 60.623 44.000 0.00 0.00 0.00 2.01
4641 7457 5.143376 TGAAAAGTACTCCCTCCGTAAAG 57.857 43.478 0.00 0.00 0.00 1.85
4642 7458 4.834496 TGAAAAGTACTCCCTCCGTAAAGA 59.166 41.667 0.00 0.00 0.00 2.52
4643 7459 5.305128 TGAAAAGTACTCCCTCCGTAAAGAA 59.695 40.000 0.00 0.00 0.00 2.52
4644 7460 5.813513 AAAGTACTCCCTCCGTAAAGAAA 57.186 39.130 0.00 0.00 0.00 2.52
4645 7461 6.370186 AAAGTACTCCCTCCGTAAAGAAAT 57.630 37.500 0.00 0.00 0.00 2.17
4646 7462 7.486407 AAAGTACTCCCTCCGTAAAGAAATA 57.514 36.000 0.00 0.00 0.00 1.40
4647 7463 7.672122 AAGTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
4648 7464 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
4649 7465 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4650 7466 8.637099 AGTACTCCCTCCGTAAAGAAATATAAC 58.363 37.037 0.00 0.00 0.00 1.89
4651 7467 7.427989 ACTCCCTCCGTAAAGAAATATAACA 57.572 36.000 0.00 0.00 0.00 2.41
4652 7468 7.498443 ACTCCCTCCGTAAAGAAATATAACAG 58.502 38.462 0.00 0.00 0.00 3.16
4653 7469 6.285990 TCCCTCCGTAAAGAAATATAACAGC 58.714 40.000 0.00 0.00 0.00 4.40
4654 7470 5.176958 CCCTCCGTAAAGAAATATAACAGCG 59.823 44.000 0.00 0.00 0.00 5.18
4655 7471 5.751990 CCTCCGTAAAGAAATATAACAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
4656 7472 6.257193 CCTCCGTAAAGAAATATAACAGCGTT 59.743 38.462 0.02 0.02 0.00 4.84
4657 7473 7.201582 CCTCCGTAAAGAAATATAACAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
4658 7474 8.700722 TCCGTAAAGAAATATAACAGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
4659 7475 8.810427 TCCGTAAAGAAATATAACAGCGTTTAG 58.190 33.333 0.00 0.00 0.00 1.85
4660 7476 8.810427 CCGTAAAGAAATATAACAGCGTTTAGA 58.190 33.333 0.00 0.00 0.00 2.10
4665 7481 9.601217 AAGAAATATAACAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 0.00 3.41
4717 7533 6.428083 TTTTTACAGAGGGAGTACATGTGA 57.572 37.500 9.11 0.00 0.00 3.58
4728 7544 3.347216 AGTACATGTGATTGCCAACTCC 58.653 45.455 9.11 0.00 0.00 3.85
4751 7567 5.161358 CGGAAGGAAAGGATTAAAGCAAAC 58.839 41.667 0.00 0.00 0.00 2.93
4769 7586 4.450757 GCAAACCGTTTTCAGCCATTAAAT 59.549 37.500 0.00 0.00 0.00 1.40
4782 7599 6.318648 TCAGCCATTAAATACCTGTTTGCTAG 59.681 38.462 0.00 0.00 0.00 3.42
4783 7600 5.067805 AGCCATTAAATACCTGTTTGCTAGC 59.932 40.000 8.10 8.10 0.00 3.42
4789 7606 6.840780 AAATACCTGTTTGCTAGCAGATTT 57.159 33.333 18.45 12.18 34.87 2.17
4840 7657 3.835978 TGGGAGAAACCGAGATTCTTGTA 59.164 43.478 0.27 0.00 37.26 2.41
4874 7692 7.710766 GCTTAGGCTTTACGAACTTATGTAT 57.289 36.000 0.00 0.00 35.22 2.29
4878 7696 6.412214 AGGCTTTACGAACTTATGTATTGGT 58.588 36.000 0.00 0.00 0.00 3.67
4881 7699 7.178074 GCTTTACGAACTTATGTATTGGTGAC 58.822 38.462 0.00 0.00 0.00 3.67
4920 7738 5.919348 AGGTTCCATGATGATTACAGGAT 57.081 39.130 0.00 0.00 0.00 3.24
4921 7739 5.628130 AGGTTCCATGATGATTACAGGATG 58.372 41.667 0.00 0.00 46.00 3.51
4922 7740 5.370584 AGGTTCCATGATGATTACAGGATGA 59.629 40.000 0.00 0.00 39.69 2.92
4923 7741 6.045224 AGGTTCCATGATGATTACAGGATGAT 59.955 38.462 0.00 0.00 39.69 2.45
4924 7742 7.238305 AGGTTCCATGATGATTACAGGATGATA 59.762 37.037 0.00 0.00 39.69 2.15
4925 7743 7.551974 GGTTCCATGATGATTACAGGATGATAG 59.448 40.741 0.00 0.00 39.69 2.08
4926 7744 8.316946 GTTCCATGATGATTACAGGATGATAGA 58.683 37.037 0.00 0.00 39.69 1.98
4927 7745 7.845037 TCCATGATGATTACAGGATGATAGAC 58.155 38.462 0.00 0.00 39.69 2.59
4928 7746 7.046652 CCATGATGATTACAGGATGATAGACC 58.953 42.308 0.00 0.00 39.69 3.85
4929 7747 6.611613 TGATGATTACAGGATGATAGACCC 57.388 41.667 0.00 0.00 39.69 4.46
4930 7748 6.084060 TGATGATTACAGGATGATAGACCCA 58.916 40.000 0.00 0.00 39.69 4.51
4931 7749 5.808366 TGATTACAGGATGATAGACCCAC 57.192 43.478 0.00 0.00 39.69 4.61
4932 7750 5.467738 TGATTACAGGATGATAGACCCACT 58.532 41.667 0.00 0.00 39.69 4.00
4933 7751 5.905331 TGATTACAGGATGATAGACCCACTT 59.095 40.000 0.00 0.00 39.69 3.16
4934 7752 5.614324 TTACAGGATGATAGACCCACTTG 57.386 43.478 0.00 0.00 39.69 3.16
4935 7753 2.774234 ACAGGATGATAGACCCACTTGG 59.226 50.000 0.00 0.00 39.69 3.61
4936 7754 3.041211 CAGGATGATAGACCCACTTGGA 58.959 50.000 0.00 0.00 39.69 3.53
4937 7755 3.649981 CAGGATGATAGACCCACTTGGAT 59.350 47.826 0.00 0.00 39.69 3.41
4938 7756 3.906846 AGGATGATAGACCCACTTGGATC 59.093 47.826 0.00 0.00 37.39 3.36
4939 7757 3.306364 GGATGATAGACCCACTTGGATCG 60.306 52.174 0.00 0.00 37.39 3.69
4940 7758 2.747177 TGATAGACCCACTTGGATCGT 58.253 47.619 0.00 0.00 37.39 3.73
4941 7759 2.430694 TGATAGACCCACTTGGATCGTG 59.569 50.000 0.00 0.00 37.39 4.35
4942 7760 1.933021 TAGACCCACTTGGATCGTGT 58.067 50.000 0.00 0.00 37.39 4.49
4943 7761 1.933021 AGACCCACTTGGATCGTGTA 58.067 50.000 0.00 0.00 37.39 2.90
4944 7762 1.825474 AGACCCACTTGGATCGTGTAG 59.175 52.381 0.00 0.00 37.39 2.74
4945 7763 0.902531 ACCCACTTGGATCGTGTAGG 59.097 55.000 0.00 0.00 37.39 3.18
4946 7764 0.462047 CCCACTTGGATCGTGTAGGC 60.462 60.000 0.00 0.00 37.39 3.93
4947 7765 0.537188 CCACTTGGATCGTGTAGGCT 59.463 55.000 0.00 0.00 37.39 4.58
4948 7766 1.754803 CCACTTGGATCGTGTAGGCTA 59.245 52.381 0.00 0.00 37.39 3.93
4949 7767 2.223829 CCACTTGGATCGTGTAGGCTAG 60.224 54.545 0.00 0.00 37.39 3.42
4950 7768 2.688446 CACTTGGATCGTGTAGGCTAGA 59.312 50.000 0.00 0.00 0.00 2.43
4951 7769 3.319405 CACTTGGATCGTGTAGGCTAGAT 59.681 47.826 0.00 0.00 0.00 1.98
4952 7770 4.519350 CACTTGGATCGTGTAGGCTAGATA 59.481 45.833 0.00 0.00 0.00 1.98
4953 7771 5.184096 CACTTGGATCGTGTAGGCTAGATAT 59.816 44.000 0.00 0.00 0.00 1.63
4954 7772 5.775701 ACTTGGATCGTGTAGGCTAGATATT 59.224 40.000 0.00 0.00 0.00 1.28
4955 7773 5.899120 TGGATCGTGTAGGCTAGATATTC 57.101 43.478 0.00 0.00 0.00 1.75
4956 7774 4.705507 TGGATCGTGTAGGCTAGATATTCC 59.294 45.833 0.00 2.40 0.00 3.01
4957 7775 4.201930 GGATCGTGTAGGCTAGATATTCCG 60.202 50.000 0.00 0.00 0.00 4.30
4958 7776 3.079578 TCGTGTAGGCTAGATATTCCGG 58.920 50.000 0.00 0.00 0.00 5.14
4959 7777 2.818432 CGTGTAGGCTAGATATTCCGGT 59.182 50.000 0.00 0.00 0.00 5.28
4960 7778 4.005650 CGTGTAGGCTAGATATTCCGGTA 58.994 47.826 0.00 0.00 0.00 4.02
4961 7779 4.142730 CGTGTAGGCTAGATATTCCGGTAC 60.143 50.000 0.00 0.00 0.00 3.34
4962 7780 4.763793 GTGTAGGCTAGATATTCCGGTACA 59.236 45.833 0.00 0.00 0.00 2.90
4963 7781 4.763793 TGTAGGCTAGATATTCCGGTACAC 59.236 45.833 0.00 0.00 0.00 2.90
4964 7782 3.840991 AGGCTAGATATTCCGGTACACA 58.159 45.455 0.00 0.00 0.00 3.72
4965 7783 4.417437 AGGCTAGATATTCCGGTACACAT 58.583 43.478 0.00 0.00 0.00 3.21
4966 7784 5.577100 AGGCTAGATATTCCGGTACACATA 58.423 41.667 0.00 0.00 0.00 2.29
4967 7785 5.418209 AGGCTAGATATTCCGGTACACATAC 59.582 44.000 0.00 0.00 0.00 2.39
4968 7786 5.393896 GGCTAGATATTCCGGTACACATACC 60.394 48.000 0.00 0.00 46.72 2.73
4976 7794 2.038387 GGTACACATACCTTGGGCAG 57.962 55.000 0.00 0.00 46.68 4.85
4977 7795 1.379527 GTACACATACCTTGGGCAGC 58.620 55.000 0.00 0.00 28.72 5.25
4978 7796 0.988063 TACACATACCTTGGGCAGCA 59.012 50.000 0.00 0.00 28.72 4.41
4979 7797 0.322816 ACACATACCTTGGGCAGCAG 60.323 55.000 0.00 0.00 28.72 4.24
4980 7798 0.322816 CACATACCTTGGGCAGCAGT 60.323 55.000 0.00 0.00 0.00 4.40
4981 7799 1.065491 CACATACCTTGGGCAGCAGTA 60.065 52.381 0.00 0.00 0.00 2.74
4982 7800 1.210478 ACATACCTTGGGCAGCAGTAG 59.790 52.381 0.00 0.00 0.00 2.57
4983 7801 1.486310 CATACCTTGGGCAGCAGTAGA 59.514 52.381 0.00 0.00 0.00 2.59
4984 7802 1.879575 TACCTTGGGCAGCAGTAGAT 58.120 50.000 0.00 0.00 0.00 1.98
4985 7803 0.254178 ACCTTGGGCAGCAGTAGATG 59.746 55.000 0.00 0.00 0.00 2.90
4986 7804 0.543277 CCTTGGGCAGCAGTAGATGA 59.457 55.000 0.00 0.00 31.30 2.92
4987 7805 1.065199 CCTTGGGCAGCAGTAGATGAA 60.065 52.381 0.00 0.00 31.30 2.57
4988 7806 2.012673 CTTGGGCAGCAGTAGATGAAC 58.987 52.381 0.00 0.00 31.30 3.18
4989 7807 1.279496 TGGGCAGCAGTAGATGAACT 58.721 50.000 0.00 0.00 31.30 3.01
4990 7808 1.208052 TGGGCAGCAGTAGATGAACTC 59.792 52.381 0.00 0.00 31.30 3.01
4991 7809 1.565305 GGCAGCAGTAGATGAACTCG 58.435 55.000 0.00 0.00 31.30 4.18
4992 7810 1.135139 GGCAGCAGTAGATGAACTCGA 59.865 52.381 0.00 0.00 31.30 4.04
4993 7811 2.458951 GCAGCAGTAGATGAACTCGAG 58.541 52.381 11.84 11.84 31.30 4.04
4994 7812 2.458951 CAGCAGTAGATGAACTCGAGC 58.541 52.381 13.61 0.00 31.30 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.073062 ACTCACAGTGGGTTTTCTGCTAT 59.927 43.478 0.00 0.00 35.37 2.97
2 3 2.438021 ACTCACAGTGGGTTTTCTGCTA 59.562 45.455 0.00 0.00 35.37 3.49
4 5 1.334869 CACTCACAGTGGGTTTTCTGC 59.665 52.381 2.20 0.00 42.35 4.26
5 6 2.917933 TCACTCACAGTGGGTTTTCTG 58.082 47.619 2.20 0.00 45.94 3.02
6 7 3.392616 AGATCACTCACAGTGGGTTTTCT 59.607 43.478 2.20 6.27 45.94 2.52
7 8 3.744660 AGATCACTCACAGTGGGTTTTC 58.255 45.455 2.20 3.84 45.94 2.29
8 9 3.496870 GGAGATCACTCACAGTGGGTTTT 60.497 47.826 2.20 0.00 45.94 2.43
9 10 2.039084 GGAGATCACTCACAGTGGGTTT 59.961 50.000 2.20 0.00 45.94 3.27
10 11 1.625818 GGAGATCACTCACAGTGGGTT 59.374 52.381 2.20 0.00 45.94 4.11
11 12 1.270907 GGAGATCACTCACAGTGGGT 58.729 55.000 0.00 0.00 45.94 4.51
12 13 1.269958 TGGAGATCACTCACAGTGGG 58.730 55.000 0.00 0.00 45.94 4.61
13 14 3.055602 TCAATGGAGATCACTCACAGTGG 60.056 47.826 0.00 0.00 45.94 4.00
15 16 4.829968 CTTCAATGGAGATCACTCACAGT 58.170 43.478 0.00 0.00 44.22 3.55
16 17 3.622163 GCTTCAATGGAGATCACTCACAG 59.378 47.826 0.00 0.00 44.22 3.66
17 18 3.262660 AGCTTCAATGGAGATCACTCACA 59.737 43.478 0.00 0.00 44.22 3.58
18 19 3.871485 AGCTTCAATGGAGATCACTCAC 58.129 45.455 0.00 0.00 44.22 3.51
19 20 5.454329 CCATAGCTTCAATGGAGATCACTCA 60.454 44.000 8.12 0.00 45.77 3.41
20 21 4.996122 CCATAGCTTCAATGGAGATCACTC 59.004 45.833 8.12 0.00 45.77 3.51
21 22 4.657504 TCCATAGCTTCAATGGAGATCACT 59.342 41.667 11.92 0.00 46.29 3.41
22 23 4.965814 TCCATAGCTTCAATGGAGATCAC 58.034 43.478 11.92 0.00 46.29 3.06
37 38 0.378610 GCAAGGTTTCGCTCCATAGC 59.621 55.000 0.00 0.00 45.86 2.97
38 39 2.029838 AGCAAGGTTTCGCTCCATAG 57.970 50.000 0.00 0.00 31.16 2.23
39 40 2.419574 GGTAGCAAGGTTTCGCTCCATA 60.420 50.000 0.00 0.00 39.70 2.74
40 41 1.679032 GGTAGCAAGGTTTCGCTCCAT 60.679 52.381 0.00 0.00 39.70 3.41
41 42 0.321298 GGTAGCAAGGTTTCGCTCCA 60.321 55.000 0.00 0.00 39.70 3.86
42 43 0.321298 TGGTAGCAAGGTTTCGCTCC 60.321 55.000 0.00 0.00 39.70 4.70
43 44 0.796927 GTGGTAGCAAGGTTTCGCTC 59.203 55.000 0.00 0.00 39.70 5.03
44 45 0.605589 GGTGGTAGCAAGGTTTCGCT 60.606 55.000 0.00 0.00 42.34 4.93
45 46 1.873863 GGTGGTAGCAAGGTTTCGC 59.126 57.895 0.00 0.00 0.00 4.70
46 47 1.296056 CCGGTGGTAGCAAGGTTTCG 61.296 60.000 0.00 0.00 0.00 3.46
47 48 1.583495 GCCGGTGGTAGCAAGGTTTC 61.583 60.000 16.11 0.00 0.00 2.78
48 49 1.602605 GCCGGTGGTAGCAAGGTTT 60.603 57.895 16.11 0.00 0.00 3.27
49 50 2.033602 GCCGGTGGTAGCAAGGTT 59.966 61.111 16.11 0.00 0.00 3.50
50 51 2.824880 TTGCCGGTGGTAGCAAGGT 61.825 57.895 16.11 0.00 43.74 3.50
51 52 2.033448 TTGCCGGTGGTAGCAAGG 59.967 61.111 1.90 11.98 43.74 3.61
53 54 2.281900 GGTTGCCGGTGGTAGCAA 60.282 61.111 1.90 0.00 46.26 3.91
54 55 3.561241 TGGTTGCCGGTGGTAGCA 61.561 61.111 1.90 0.00 37.18 3.49
55 56 3.053896 GTGGTTGCCGGTGGTAGC 61.054 66.667 1.90 0.00 0.00 3.58
56 57 1.002624 ATGTGGTTGCCGGTGGTAG 60.003 57.895 1.90 0.00 0.00 3.18
57 58 1.003112 GATGTGGTTGCCGGTGGTA 60.003 57.895 1.90 0.00 0.00 3.25
58 59 2.282180 GATGTGGTTGCCGGTGGT 60.282 61.111 1.90 0.00 0.00 4.16
59 60 2.282110 TGATGTGGTTGCCGGTGG 60.282 61.111 1.90 0.00 0.00 4.61
60 61 0.321210 TACTGATGTGGTTGCCGGTG 60.321 55.000 1.90 0.00 0.00 4.94
61 62 0.036388 CTACTGATGTGGTTGCCGGT 60.036 55.000 1.90 0.00 0.00 5.28
62 63 0.249120 TCTACTGATGTGGTTGCCGG 59.751 55.000 0.00 0.00 0.00 6.13
63 64 1.066858 ACTCTACTGATGTGGTTGCCG 60.067 52.381 0.00 0.00 0.00 5.69
64 65 2.770164 ACTCTACTGATGTGGTTGCC 57.230 50.000 0.00 0.00 0.00 4.52
65 66 3.664107 TGAACTCTACTGATGTGGTTGC 58.336 45.455 0.00 0.00 0.00 4.17
66 67 7.323420 TCTATTGAACTCTACTGATGTGGTTG 58.677 38.462 0.00 0.00 0.00 3.77
67 68 7.179338 ACTCTATTGAACTCTACTGATGTGGTT 59.821 37.037 0.00 0.00 0.00 3.67
68 69 6.665680 ACTCTATTGAACTCTACTGATGTGGT 59.334 38.462 0.00 0.00 0.00 4.16
69 70 7.106439 ACTCTATTGAACTCTACTGATGTGG 57.894 40.000 0.00 0.00 0.00 4.17
70 71 9.114952 TCTACTCTATTGAACTCTACTGATGTG 57.885 37.037 0.00 0.00 0.00 3.21
71 72 9.337396 CTCTACTCTATTGAACTCTACTGATGT 57.663 37.037 0.00 0.00 0.00 3.06
72 73 9.554395 TCTCTACTCTATTGAACTCTACTGATG 57.446 37.037 0.00 0.00 0.00 3.07
74 75 9.961264 TTTCTCTACTCTATTGAACTCTACTGA 57.039 33.333 0.00 0.00 0.00 3.41
77 78 9.791820 GGTTTTCTCTACTCTATTGAACTCTAC 57.208 37.037 0.00 0.00 0.00 2.59
78 79 9.529823 TGGTTTTCTCTACTCTATTGAACTCTA 57.470 33.333 0.00 0.00 0.00 2.43
79 80 8.308207 GTGGTTTTCTCTACTCTATTGAACTCT 58.692 37.037 0.00 0.00 0.00 3.24
80 81 8.088981 TGTGGTTTTCTCTACTCTATTGAACTC 58.911 37.037 0.00 0.00 0.00 3.01
81 82 7.873505 GTGTGGTTTTCTCTACTCTATTGAACT 59.126 37.037 0.00 0.00 0.00 3.01
82 83 7.656137 TGTGTGGTTTTCTCTACTCTATTGAAC 59.344 37.037 0.00 0.00 0.00 3.18
83 84 7.732025 TGTGTGGTTTTCTCTACTCTATTGAA 58.268 34.615 0.00 0.00 0.00 2.69
84 85 7.297936 TGTGTGGTTTTCTCTACTCTATTGA 57.702 36.000 0.00 0.00 0.00 2.57
85 86 9.653287 TTATGTGTGGTTTTCTCTACTCTATTG 57.347 33.333 0.00 0.00 0.00 1.90
88 89 9.871238 GAATTATGTGTGGTTTTCTCTACTCTA 57.129 33.333 0.00 0.00 0.00 2.43
89 90 8.375506 TGAATTATGTGTGGTTTTCTCTACTCT 58.624 33.333 0.00 0.00 0.00 3.24
90 91 8.547967 TGAATTATGTGTGGTTTTCTCTACTC 57.452 34.615 0.00 0.00 0.00 2.59
91 92 8.157476 ACTGAATTATGTGTGGTTTTCTCTACT 58.843 33.333 0.00 0.00 0.00 2.57
92 93 8.230486 CACTGAATTATGTGTGGTTTTCTCTAC 58.770 37.037 3.04 0.00 0.00 2.59
93 94 7.390440 CCACTGAATTATGTGTGGTTTTCTCTA 59.610 37.037 0.00 0.00 43.41 2.43
94 95 6.207417 CCACTGAATTATGTGTGGTTTTCTCT 59.793 38.462 0.00 0.00 43.41 3.10
95 96 6.381801 CCACTGAATTATGTGTGGTTTTCTC 58.618 40.000 0.00 0.00 43.41 2.87
96 97 5.243730 CCCACTGAATTATGTGTGGTTTTCT 59.756 40.000 9.67 0.00 46.02 2.52
97 98 5.010617 ACCCACTGAATTATGTGTGGTTTTC 59.989 40.000 9.67 0.00 46.02 2.29
98 99 4.898861 ACCCACTGAATTATGTGTGGTTTT 59.101 37.500 9.67 0.00 46.02 2.43
99 100 4.280677 CACCCACTGAATTATGTGTGGTTT 59.719 41.667 14.70 4.03 46.02 3.27
100 101 3.826157 CACCCACTGAATTATGTGTGGTT 59.174 43.478 14.70 3.32 46.02 3.67
101 102 3.073798 TCACCCACTGAATTATGTGTGGT 59.926 43.478 9.67 13.35 46.02 4.16
102 103 3.684908 TCACCCACTGAATTATGTGTGG 58.315 45.455 0.00 0.00 46.74 4.17
103 104 5.902613 ATTCACCCACTGAATTATGTGTG 57.097 39.130 8.77 2.58 45.89 3.82
149 150 5.766150 AAACAATTTGAGTCATCCACGAA 57.234 34.783 2.79 0.00 0.00 3.85
151 152 6.086222 CCTTAAACAATTTGAGTCATCCACG 58.914 40.000 2.79 0.00 0.00 4.94
158 159 6.503524 TGTCTTGCCTTAAACAATTTGAGTC 58.496 36.000 2.79 0.00 0.00 3.36
172 173 4.401022 TCAGATTTCACATGTCTTGCCTT 58.599 39.130 0.00 0.00 0.00 4.35
183 184 4.005650 GGAGCAACTCATCAGATTTCACA 58.994 43.478 0.00 0.00 31.08 3.58
184 185 3.376546 GGGAGCAACTCATCAGATTTCAC 59.623 47.826 0.00 0.00 31.08 3.18
191 1314 2.775911 TTGAGGGAGCAACTCATCAG 57.224 50.000 5.95 0.00 43.82 2.90
211 1334 9.396022 CTATAACCTGTTTTCTGTATTGTGGAT 57.604 33.333 0.00 0.00 0.00 3.41
220 1343 6.710744 CCAACTCACTATAACCTGTTTTCTGT 59.289 38.462 0.00 0.00 0.00 3.41
224 1347 4.765339 GCCCAACTCACTATAACCTGTTTT 59.235 41.667 0.00 0.00 0.00 2.43
226 1349 3.618997 CGCCCAACTCACTATAACCTGTT 60.619 47.826 0.00 0.00 0.00 3.16
227 1350 2.093658 CGCCCAACTCACTATAACCTGT 60.094 50.000 0.00 0.00 0.00 4.00
228 1351 2.093658 ACGCCCAACTCACTATAACCTG 60.094 50.000 0.00 0.00 0.00 4.00
229 1352 2.185387 ACGCCCAACTCACTATAACCT 58.815 47.619 0.00 0.00 0.00 3.50
230 1353 2.685850 ACGCCCAACTCACTATAACC 57.314 50.000 0.00 0.00 0.00 2.85
236 1359 2.663196 GCCTACGCCCAACTCACT 59.337 61.111 0.00 0.00 0.00 3.41
248 1371 1.660167 GTTGTGTAATCCGGGCCTAC 58.340 55.000 0.84 1.37 0.00 3.18
259 1382 2.224499 GGGGTTCGTTAGGGTTGTGTAA 60.224 50.000 0.00 0.00 0.00 2.41
261 1384 0.109153 GGGGTTCGTTAGGGTTGTGT 59.891 55.000 0.00 0.00 0.00 3.72
262 1385 0.108963 TGGGGTTCGTTAGGGTTGTG 59.891 55.000 0.00 0.00 0.00 3.33
277 1401 4.024984 TCAGGGAGGGGAGTGGGG 62.025 72.222 0.00 0.00 0.00 4.96
281 1405 1.864559 AGGAGTCAGGGAGGGGAGT 60.865 63.158 0.00 0.00 0.00 3.85
282 1406 1.075600 GAGGAGTCAGGGAGGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
283 1407 1.156322 AAGAGGAGTCAGGGAGGGGA 61.156 60.000 0.00 0.00 0.00 4.81
344 1472 3.904136 AAATGGATCGATCGATTTGCC 57.096 42.857 33.85 25.21 41.55 4.52
347 1475 3.499918 GGAGCAAATGGATCGATCGATTT 59.500 43.478 31.01 31.01 43.11 2.17
348 1476 3.070018 GGAGCAAATGGATCGATCGATT 58.930 45.455 29.89 24.75 36.90 3.34
349 1477 2.301296 AGGAGCAAATGGATCGATCGAT 59.699 45.455 29.76 29.76 37.59 3.59
350 1478 1.688735 AGGAGCAAATGGATCGATCGA 59.311 47.619 21.86 21.86 30.89 3.59
351 1479 2.160822 AGGAGCAAATGGATCGATCG 57.839 50.000 18.81 9.36 30.89 3.69
404 1534 2.919494 CGGTTGGTCTTGGCCTTGC 61.919 63.158 3.32 0.00 0.00 4.01
405 1535 1.515521 GACGGTTGGTCTTGGCCTTG 61.516 60.000 3.32 0.00 42.62 3.61
414 1544 1.553706 TCCTTAGGAGACGGTTGGTC 58.446 55.000 0.00 0.00 46.45 4.02
418 1548 5.191124 ACCAATAAATCCTTAGGAGACGGTT 59.809 40.000 7.19 0.00 34.05 4.44
422 1552 9.457436 TGTTAAACCAATAAATCCTTAGGAGAC 57.543 33.333 7.19 0.00 34.05 3.36
426 1556 9.801873 CATGTGTTAAACCAATAAATCCTTAGG 57.198 33.333 0.00 0.00 0.00 2.69
438 1568 6.068010 ACTCCTTCATCATGTGTTAAACCAA 58.932 36.000 0.00 0.00 0.00 3.67
448 1578 7.341030 TGAATGTATCAACTCCTTCATCATGT 58.659 34.615 0.00 0.00 34.30 3.21
482 1612 5.799542 ACATTTCAAAATAAACGCGACAC 57.200 34.783 15.93 0.00 0.00 3.67
486 1616 7.213521 GCCATTTAACATTTCAAAATAAACGCG 59.786 33.333 3.53 3.53 0.00 6.01
499 1629 2.636893 TGGTGCTGGCCATTTAACATTT 59.363 40.909 5.51 0.00 32.81 2.32
508 1638 1.077086 TCATGTTGGTGCTGGCCAT 59.923 52.632 5.51 0.00 38.48 4.40
528 1658 7.190920 AGGCTTGCGATAGAATATTAAACAC 57.809 36.000 0.00 0.00 39.76 3.32
536 1666 7.393515 TGAGTTAGATAGGCTTGCGATAGAATA 59.606 37.037 0.00 0.00 39.76 1.75
542 1672 4.672587 TTGAGTTAGATAGGCTTGCGAT 57.327 40.909 0.00 0.00 0.00 4.58
545 1675 4.201960 GCCTTTTGAGTTAGATAGGCTTGC 60.202 45.833 0.00 0.00 43.67 4.01
566 1696 1.271543 TGGGCTATATGAGTGCATGCC 60.272 52.381 16.68 6.65 39.27 4.40
572 1702 6.372659 GGTAAATGTGATGGGCTATATGAGTG 59.627 42.308 0.00 0.00 0.00 3.51
573 1703 6.044287 TGGTAAATGTGATGGGCTATATGAGT 59.956 38.462 0.00 0.00 0.00 3.41
581 1711 2.825532 GTTGTGGTAAATGTGATGGGCT 59.174 45.455 0.00 0.00 0.00 5.19
597 1727 8.267620 TGGATACATCTTCAATACTTGTTGTG 57.732 34.615 0.00 0.00 46.17 3.33
633 1764 8.816640 ATGTGTCAAAGTATTGCCTTTAAAAG 57.183 30.769 0.00 0.00 36.45 2.27
638 1769 5.183904 GGAGATGTGTCAAAGTATTGCCTTT 59.816 40.000 0.00 0.00 36.45 3.11
640 1771 4.018960 AGGAGATGTGTCAAAGTATTGCCT 60.019 41.667 0.00 0.00 36.45 4.75
671 1802 8.244113 TGTTTTCTCTCTTCTTTTGTCCTTTTC 58.756 33.333 0.00 0.00 0.00 2.29
676 1809 6.763610 TCTCTGTTTTCTCTCTTCTTTTGTCC 59.236 38.462 0.00 0.00 0.00 4.02
708 1841 7.623630 AGGATTGCATTTTATTTGCTTAGGTT 58.376 30.769 0.00 0.00 40.77 3.50
709 1842 7.186570 AGGATTGCATTTTATTTGCTTAGGT 57.813 32.000 0.00 0.00 40.77 3.08
830 2012 9.647797 TTACTTGTTTCCTTTTTCCTTTTTCTC 57.352 29.630 0.00 0.00 0.00 2.87
858 2076 6.879188 TTTTGTTCTTTCCATGTCGTTTTC 57.121 33.333 0.00 0.00 0.00 2.29
1029 2283 2.441348 TAGACGCGGAGATGGCCA 60.441 61.111 8.56 8.56 0.00 5.36
1081 2335 2.837291 CTGCTCCCTCTCCTCCCG 60.837 72.222 0.00 0.00 0.00 5.14
1370 2633 4.671590 TGACGGCCTCCCAGTCGA 62.672 66.667 0.00 0.00 37.42 4.20
1509 2779 2.339712 GCCACCATTGCGCACTTT 59.660 55.556 11.12 0.00 0.00 2.66
1587 2857 1.107538 CGGCCTTCTCGAGGGTATCA 61.108 60.000 13.56 0.00 46.40 2.15
1590 2860 1.751927 GACGGCCTTCTCGAGGGTA 60.752 63.158 13.56 0.00 46.40 3.69
1679 2958 0.768221 AGGAGCAGGACAAGGGACAA 60.768 55.000 0.00 0.00 0.00 3.18
1761 3040 1.379916 CTGATGGGTCACCTTGGCA 59.620 57.895 0.00 0.00 37.76 4.92
2344 3653 0.593128 CCAGTGGAACGAAAAGCAGG 59.407 55.000 1.68 0.00 45.86 4.85
2425 3737 0.525668 CGCTGTATGTGTCCCTCGTC 60.526 60.000 0.00 0.00 0.00 4.20
2427 3739 0.172578 TTCGCTGTATGTGTCCCTCG 59.827 55.000 0.00 0.00 0.00 4.63
2453 3765 6.287589 TGACCTTTCTGGAGATTCTTCTAC 57.712 41.667 0.00 0.00 39.71 2.59
2802 5016 2.945668 GCTCAGCGGGATAATCAAAAGT 59.054 45.455 0.00 0.00 0.00 2.66
2899 5119 1.854280 ACCCCTTGGTCCAAGTGTTAA 59.146 47.619 26.52 0.00 43.06 2.01
2928 5148 2.107378 TCCCACCAACAATGCTTCTACA 59.893 45.455 0.00 0.00 0.00 2.74
2990 5225 9.822185 AATTGCTCATCTTTTAAAACAACTTCT 57.178 25.926 0.00 0.00 0.00 2.85
3091 5352 1.467734 GCAGACCACAAGAAGCTGATG 59.532 52.381 0.00 0.00 0.00 3.07
3101 5362 0.179032 ATTCACACCGCAGACCACAA 60.179 50.000 0.00 0.00 0.00 3.33
3345 5609 3.973973 GGAGCATATATATACCAGCCCCA 59.026 47.826 8.45 0.00 0.00 4.96
3411 5721 3.118334 AGCATCAGAGCAGCTAATGAAGT 60.118 43.478 12.63 0.00 36.73 3.01
3484 5931 5.594725 TCCAAGGACTGTGAGTCTATCATAC 59.405 44.000 3.85 0.00 44.46 2.39
3524 5971 8.840321 GGTGAATTGATTGTGTGTTAGCTATAT 58.160 33.333 0.00 0.00 0.00 0.86
3527 5974 6.000840 TGGTGAATTGATTGTGTGTTAGCTA 58.999 36.000 0.00 0.00 0.00 3.32
3528 5975 4.826733 TGGTGAATTGATTGTGTGTTAGCT 59.173 37.500 0.00 0.00 0.00 3.32
3556 6004 9.145865 CCTTTCTATCTTGACTTCAGAAGTTAC 57.854 37.037 17.19 6.19 43.03 2.50
3607 6120 5.062528 ACAAAAAGGGCAACATTGGTATTG 58.937 37.500 0.00 0.00 41.67 1.90
3631 6144 5.545658 ACATGCACTTAATACTTCCAACG 57.454 39.130 0.00 0.00 0.00 4.10
3679 6193 2.766239 TGCCACATGTATGCAGACG 58.234 52.632 15.97 0.00 0.00 4.18
3690 6204 1.968017 CGCACTGGTTCTGCCACAT 60.968 57.895 0.00 0.00 43.61 3.21
3871 6385 7.648142 CCACAGTGTTTGTAACATATTCACTT 58.352 34.615 0.00 0.00 44.35 3.16
3905 6419 1.135489 GTACATGCAGTCCTCGTCGAA 60.135 52.381 0.00 0.00 0.00 3.71
3970 6484 7.415086 ACTACTCCTCTCCATAATAATCCGAT 58.585 38.462 0.00 0.00 0.00 4.18
4001 6515 2.343758 CACCCCTCACCGTCACTG 59.656 66.667 0.00 0.00 0.00 3.66
4024 6538 6.280855 TCGAGGATAATCAGTGAAGTGAAA 57.719 37.500 0.00 0.00 0.00 2.69
4066 6580 6.245408 AGTAAGGAGCACACCATGAATAAAA 58.755 36.000 0.00 0.00 0.00 1.52
4088 6602 5.888161 CAGAAGACCTGCCCAATATAAAAGT 59.112 40.000 0.00 0.00 35.89 2.66
4228 6748 0.907486 TCCTTGATCACCAGCTCCAG 59.093 55.000 0.00 0.00 0.00 3.86
4255 6775 0.815734 GCTTCAGGCATCAGCAACAT 59.184 50.000 0.00 0.00 44.61 2.71
4304 6824 1.694150 CAGAGACCAAAGGACCACAGA 59.306 52.381 0.00 0.00 0.00 3.41
4324 6848 4.888917 AGTTCAAAGCAGTAGAGAGAACC 58.111 43.478 0.00 0.00 35.68 3.62
4437 6969 3.217626 CAACAAGCTGGAAAAGAGAGGT 58.782 45.455 0.00 0.00 0.00 3.85
4452 6990 5.900339 TTAGTTCGTACAAGAGCAACAAG 57.100 39.130 0.00 0.00 0.00 3.16
4467 7005 5.975344 TCGCTCAACCTGTATATTTAGTTCG 59.025 40.000 0.00 0.00 0.00 3.95
4531 7337 4.022849 GCCAACAGACTATGAAACAAGCTT 60.023 41.667 0.00 0.00 0.00 3.74
4573 7389 4.828939 AGCAAGATCCTTTTGATGTCAACA 59.171 37.500 0.00 0.00 35.28 3.33
4606 7422 6.090493 GGAGTACTTTTCATCGAAACCACTAC 59.910 42.308 0.00 0.00 30.83 2.73
4616 7432 2.165845 ACGGAGGGAGTACTTTTCATCG 59.834 50.000 0.00 0.60 0.00 3.84
4629 7445 6.285990 GCTGTTATATTTCTTTACGGAGGGA 58.714 40.000 0.00 0.00 0.00 4.20
4630 7446 5.176958 CGCTGTTATATTTCTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
4631 7447 5.751990 ACGCTGTTATATTTCTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
4632 7448 6.823678 ACGCTGTTATATTTCTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
4633 7449 7.599630 AAACGCTGTTATATTTCTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
4634 7450 8.810427 TCTAAACGCTGTTATATTTCTTTACGG 58.190 33.333 0.00 0.00 0.00 4.02
4639 7455 9.601217 AGTGATCTAAACGCTGTTATATTTCTT 57.399 29.630 0.00 0.00 0.00 2.52
4694 7510 6.428083 TCACATGTACTCCCTCTGTAAAAA 57.572 37.500 0.00 0.00 0.00 1.94
4695 7511 6.620877 ATCACATGTACTCCCTCTGTAAAA 57.379 37.500 0.00 0.00 0.00 1.52
4696 7512 6.406370 CAATCACATGTACTCCCTCTGTAAA 58.594 40.000 0.00 0.00 0.00 2.01
4697 7513 5.626809 GCAATCACATGTACTCCCTCTGTAA 60.627 44.000 0.00 0.00 0.00 2.41
4698 7514 4.141937 GCAATCACATGTACTCCCTCTGTA 60.142 45.833 0.00 0.00 0.00 2.74
4699 7515 3.369892 GCAATCACATGTACTCCCTCTGT 60.370 47.826 0.00 0.00 0.00 3.41
4700 7516 3.201290 GCAATCACATGTACTCCCTCTG 58.799 50.000 0.00 0.00 0.00 3.35
4701 7517 2.171448 GGCAATCACATGTACTCCCTCT 59.829 50.000 0.00 0.00 0.00 3.69
4702 7518 2.092968 TGGCAATCACATGTACTCCCTC 60.093 50.000 0.00 0.00 0.00 4.30
4703 7519 1.915489 TGGCAATCACATGTACTCCCT 59.085 47.619 0.00 0.00 0.00 4.20
4704 7520 2.418368 TGGCAATCACATGTACTCCC 57.582 50.000 0.00 0.00 0.00 4.30
4705 7521 3.347216 AGTTGGCAATCACATGTACTCC 58.653 45.455 1.92 0.00 0.00 3.85
4706 7522 3.375299 GGAGTTGGCAATCACATGTACTC 59.625 47.826 1.92 11.14 0.00 2.59
4717 7533 0.404040 TTCCTTCCGGAGTTGGCAAT 59.596 50.000 3.34 0.00 41.25 3.56
4728 7544 5.161358 GTTTGCTTTAATCCTTTCCTTCCG 58.839 41.667 0.00 0.00 0.00 4.30
4734 7550 6.477360 TGAAAACGGTTTGCTTTAATCCTTTC 59.523 34.615 1.45 0.56 30.48 2.62
4735 7551 6.342111 TGAAAACGGTTTGCTTTAATCCTTT 58.658 32.000 1.45 0.00 0.00 3.11
4742 7558 2.427453 TGGCTGAAAACGGTTTGCTTTA 59.573 40.909 1.45 0.00 0.00 1.85
4751 7567 5.105917 ACAGGTATTTAATGGCTGAAAACGG 60.106 40.000 0.00 0.00 0.00 4.44
4769 7586 5.560724 AGAAAATCTGCTAGCAAACAGGTA 58.439 37.500 19.86 0.00 34.57 3.08
4782 7599 3.624777 TCATTCCAGGGAGAAAATCTGC 58.375 45.455 0.00 0.00 33.75 4.26
4783 7600 6.594788 TTTTCATTCCAGGGAGAAAATCTG 57.405 37.500 9.97 0.00 35.68 2.90
4789 7606 8.899887 AAAGATATTTTTCATTCCAGGGAGAA 57.100 30.769 0.00 0.00 0.00 2.87
4827 7644 6.758886 AGCTACAGATTTTACAAGAATCTCGG 59.241 38.462 0.00 0.00 40.82 4.63
4828 7645 7.763172 AGCTACAGATTTTACAAGAATCTCG 57.237 36.000 0.00 0.00 40.82 4.04
4874 7692 2.944129 AGCCAGCTTAAAAGTCACCAA 58.056 42.857 0.00 0.00 0.00 3.67
4878 7696 4.072131 CCTTGTAGCCAGCTTAAAAGTCA 58.928 43.478 0.00 0.00 0.00 3.41
4881 7699 4.082733 GGAACCTTGTAGCCAGCTTAAAAG 60.083 45.833 0.00 0.00 0.00 2.27
4920 7738 2.430694 CACGATCCAAGTGGGTCTATCA 59.569 50.000 8.92 0.00 43.19 2.15
4921 7739 2.431057 ACACGATCCAAGTGGGTCTATC 59.569 50.000 8.92 0.00 43.19 2.08
4922 7740 2.467880 ACACGATCCAAGTGGGTCTAT 58.532 47.619 8.92 0.00 43.19 1.98
4923 7741 1.933021 ACACGATCCAAGTGGGTCTA 58.067 50.000 8.92 0.00 43.19 2.59
4924 7742 1.825474 CTACACGATCCAAGTGGGTCT 59.175 52.381 8.92 0.00 43.19 3.85
4925 7743 1.134788 CCTACACGATCCAAGTGGGTC 60.135 57.143 0.01 0.01 43.41 4.46
4926 7744 0.902531 CCTACACGATCCAAGTGGGT 59.097 55.000 0.00 0.00 43.41 4.51
4927 7745 0.462047 GCCTACACGATCCAAGTGGG 60.462 60.000 0.00 4.93 43.41 4.61
4928 7746 0.537188 AGCCTACACGATCCAAGTGG 59.463 55.000 4.56 0.00 43.41 4.00
4929 7747 2.688446 TCTAGCCTACACGATCCAAGTG 59.312 50.000 0.00 0.00 44.57 3.16
4930 7748 3.014304 TCTAGCCTACACGATCCAAGT 57.986 47.619 0.00 0.00 0.00 3.16
4931 7749 5.906113 ATATCTAGCCTACACGATCCAAG 57.094 43.478 0.00 0.00 0.00 3.61
4932 7750 5.185249 GGAATATCTAGCCTACACGATCCAA 59.815 44.000 0.00 0.00 0.00 3.53
4933 7751 4.705507 GGAATATCTAGCCTACACGATCCA 59.294 45.833 0.00 0.00 0.00 3.41
4934 7752 4.201930 CGGAATATCTAGCCTACACGATCC 60.202 50.000 0.00 0.00 0.00 3.36
4935 7753 4.201930 CCGGAATATCTAGCCTACACGATC 60.202 50.000 0.00 0.00 0.00 3.69
4936 7754 3.695060 CCGGAATATCTAGCCTACACGAT 59.305 47.826 0.00 0.00 0.00 3.73
4937 7755 3.079578 CCGGAATATCTAGCCTACACGA 58.920 50.000 0.00 0.00 0.00 4.35
4938 7756 2.818432 ACCGGAATATCTAGCCTACACG 59.182 50.000 9.46 0.00 0.00 4.49
4939 7757 4.763793 TGTACCGGAATATCTAGCCTACAC 59.236 45.833 9.46 0.00 0.00 2.90
4940 7758 4.763793 GTGTACCGGAATATCTAGCCTACA 59.236 45.833 9.46 0.00 0.00 2.74
4941 7759 4.763793 TGTGTACCGGAATATCTAGCCTAC 59.236 45.833 9.46 0.00 0.00 3.18
4942 7760 4.989277 TGTGTACCGGAATATCTAGCCTA 58.011 43.478 9.46 0.00 0.00 3.93
4943 7761 3.840991 TGTGTACCGGAATATCTAGCCT 58.159 45.455 9.46 0.00 0.00 4.58
4944 7762 4.803098 ATGTGTACCGGAATATCTAGCC 57.197 45.455 9.46 0.00 0.00 3.93
4945 7763 5.648572 GGTATGTGTACCGGAATATCTAGC 58.351 45.833 9.46 0.00 40.95 3.42
4958 7776 1.339631 TGCTGCCCAAGGTATGTGTAC 60.340 52.381 0.00 0.00 0.00 2.90
4959 7777 0.988063 TGCTGCCCAAGGTATGTGTA 59.012 50.000 0.00 0.00 0.00 2.90
4960 7778 0.322816 CTGCTGCCCAAGGTATGTGT 60.323 55.000 0.00 0.00 0.00 3.72
4961 7779 0.322816 ACTGCTGCCCAAGGTATGTG 60.323 55.000 0.00 0.00 0.00 3.21
4962 7780 1.210478 CTACTGCTGCCCAAGGTATGT 59.790 52.381 0.00 0.00 0.00 2.29
4963 7781 1.486310 TCTACTGCTGCCCAAGGTATG 59.514 52.381 0.00 0.00 0.00 2.39
4964 7782 1.879575 TCTACTGCTGCCCAAGGTAT 58.120 50.000 0.00 0.00 0.00 2.73
4965 7783 1.486310 CATCTACTGCTGCCCAAGGTA 59.514 52.381 0.00 0.00 0.00 3.08
4966 7784 0.254178 CATCTACTGCTGCCCAAGGT 59.746 55.000 0.00 0.00 0.00 3.50
4967 7785 0.543277 TCATCTACTGCTGCCCAAGG 59.457 55.000 0.00 0.00 0.00 3.61
4968 7786 2.012673 GTTCATCTACTGCTGCCCAAG 58.987 52.381 0.00 0.00 0.00 3.61
4969 7787 1.630369 AGTTCATCTACTGCTGCCCAA 59.370 47.619 0.00 0.00 0.00 4.12
4970 7788 1.208052 GAGTTCATCTACTGCTGCCCA 59.792 52.381 0.00 0.00 0.00 5.36
4971 7789 1.804372 CGAGTTCATCTACTGCTGCCC 60.804 57.143 0.00 0.00 0.00 5.36
4972 7790 1.135139 TCGAGTTCATCTACTGCTGCC 59.865 52.381 0.00 0.00 0.00 4.85
4973 7791 2.458951 CTCGAGTTCATCTACTGCTGC 58.541 52.381 3.62 0.00 0.00 5.25
4974 7792 2.458951 GCTCGAGTTCATCTACTGCTG 58.541 52.381 15.13 0.00 0.00 4.41
4975 7793 2.861462 GCTCGAGTTCATCTACTGCT 57.139 50.000 15.13 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.