AutoCloner

Multiple sequence alignment - TraesCS5D01G038800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G038800	chr5D	100.000	3848	0	0	1	3848	38722823	38726670	0.000000e+00	7107.0
1	TraesCS5D01G038800	chr5D	87.711	1538	167	19	1286	2815	453239006	453240529	0.000000e+00	1773.0
2	TraesCS5D01G038800	chr5B	93.332	3884	124	47	1	3814	29336456	29340274	0.000000e+00	5613.0
3	TraesCS5D01G038800	chr5B	87.451	1538	171	19	1286	2815	553725325	553726848	0.000000e+00	1751.0
4	TraesCS5D01G038800	chr5A	92.515	3193	116	51	692	3831	27515721	27518843	0.000000e+00	4458.0
5	TraesCS5D01G038800	chr5A	86.996	1538	178	19	1286	2815	572021723	572023246	0.000000e+00	1712.0
6	TraesCS5D01G038800	chr5A	84.109	258	20	8	458	698	27515248	27515501	2.990000e-56	230.0
7	TraesCS5D01G038800	chr2D	77.135	1522	272	57	1353	2824	301379630	301378135	0.000000e+00	813.0
8	TraesCS5D01G038800	chr2D	96.552	87	2	1	283	368	529533049	529533135	4.010000e-30	143.0
9	TraesCS5D01G038800	chr2D	83.784	111	12	3	245	349	577160676	577160786	2.450000e-17	100.0
10	TraesCS5D01G038800	chr2D	95.833	48	2	0	1284	1331	596152287	596152334	1.150000e-10	78.7
11	TraesCS5D01G038800	chr2A	76.627	1506	278	52	1367	2824	378398063	378396584	0.000000e+00	763.0
12	TraesCS5D01G038800	chr2A	96.552	87	2	1	283	368	674025908	674025994	4.010000e-30	143.0
13	TraesCS5D01G038800	chr2A	92.537	67	5	0	283	349	715345344	715345410	3.160000e-16	97.1
14	TraesCS5D01G038800	chr2B	77.478	1261	238	37	1353	2581	363343715	363342469	0.000000e+00	713.0
15	TraesCS5D01G038800	chr2B	86.486	111	8	5	245	348	694062717	694062827	8.740000e-22	115.0
16	TraesCS5D01G038800	chr2B	94.030	67	3	1	2025	2090	240301581	240301647	2.450000e-17	100.0
17	TraesCS5D01G038800	chr2B	85.000	100	12	1	2130	2229	240301645	240301741	8.800000e-17	99.0
18	TraesCS5D01G038800	chr3A	90.476	126	7	1	1501	1626	22236256	22236376	1.110000e-35	161.0
19	TraesCS5D01G038800	chr4B	85.625	160	13	8	236	387	392623539	392623696	3.980000e-35	159.0
20	TraesCS5D01G038800	chr4B	83.099	71	9	3	3649	3719	659601781	659601714	1.150000e-05	62.1
21	TraesCS5D01G038800	chr4A	85.276	163	14	9	236	390	161424538	161424378	3.980000e-35	159.0
22	TraesCS5D01G038800	chr4D	84.568	162	15	7	236	389	314590311	314590470	6.660000e-33	152.0
23	TraesCS5D01G038800	chr7D	95.745	47	2	0	1293	1339	417789734	417789688	4.120000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G038800	chr5D	38722823	38726670	3847	False	7107	7107	100.000	1	3848	1	chr5D.!!$F1	3847
1	TraesCS5D01G038800	chr5D	453239006	453240529	1523	False	1773	1773	87.711	1286	2815	1	chr5D.!!$F2	1529
2	TraesCS5D01G038800	chr5B	29336456	29340274	3818	False	5613	5613	93.332	1	3814	1	chr5B.!!$F1	3813
3	TraesCS5D01G038800	chr5B	553725325	553726848	1523	False	1751	1751	87.451	1286	2815	1	chr5B.!!$F2	1529
4	TraesCS5D01G038800	chr5A	27515248	27518843	3595	False	2344	4458	88.312	458	3831	2	chr5A.!!$F2	3373
5	TraesCS5D01G038800	chr5A	572021723	572023246	1523	False	1712	1712	86.996	1286	2815	1	chr5A.!!$F1	1529
6	TraesCS5D01G038800	chr2D	301378135	301379630	1495	True	813	813	77.135	1353	2824	1	chr2D.!!$R1	1471
7	TraesCS5D01G038800	chr2A	378396584	378398063	1479	True	763	763	76.627	1367	2824	1	chr2A.!!$R1	1457
8	TraesCS5D01G038800	chr2B	363342469	363343715	1246	True	713	713	77.478	1353	2581	1	chr2B.!!$R1	1228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
566	574	0.041839	GCAGCAACACGAGACACAAG	60.042	55.0	3.16	F
889	1160	0.047176	TCTCCCCTCTCCTCTCCTCT	59.953	60.0	3.69	F
892	1163	0.106217	CCCCTCTCCTCTCCTCTCAC	60.106	65.0	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1658	1955	0.327259	GGTCTTAGGGAAAACCGGCT	59.673	55.000	46.96	5.52	R
2221	2518	1.534805	CCACATCATCTCCGACGAGTG	60.535	57.143	37.40	3.51	R
3021	3349	1.269569	CGCCGCTAACTGTATCCATGA	60.270	52.381	0.00	3.07	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
82	84	7.329588	ACCTGACTAACTAAACTTGTTTTGG	57.670	36.000	4.00	1.72	0.00	3.28
145	147	8.946085	GTCCATATGTCAAAGTATTGAACTGAA	58.054	33.333	1.24	0.00	46.66	3.02
148	150	9.764870	CATATGTCAAAGTATTGAACTGAACTG	57.235	33.333	0.00	0.00	46.66	3.16
149	151	6.060028	TGTCAAAGTATTGAACTGAACTGC	57.940	37.500	0.00	0.00	46.66	4.40
156	158	7.986085	AGTATTGAACTGAACTGCATAAACT	57.014	32.000	0.00	0.00	36.93	2.66
162	164	4.973168	ACTGAACTGCATAAACTGGAGAA	58.027	39.130	0.56	0.00	45.63	2.87
164	166	5.471456	ACTGAACTGCATAAACTGGAGAAAG	59.529	40.000	0.56	0.00	45.63	2.62
169	171	6.917533	ACTGCATAAACTGGAGAAAGAAATG	58.082	36.000	0.56	0.00	45.63	2.32
177	179	8.934023	AAACTGGAGAAAGAAATGTAATACCA	57.066	30.769	0.00	0.00	0.00	3.25
178	180	8.567285	AACTGGAGAAAGAAATGTAATACCAG	57.433	34.615	0.00	0.00	44.25	4.00
264	266	6.554334	TTACTGAACACTAAATGAAGCACC	57.446	37.500	0.00	0.00	0.00	5.01
269	271	4.946784	ACACTAAATGAAGCACCGAATC	57.053	40.909	0.00	0.00	0.00	2.52
455	458	9.521841	ACTAATAAAAAGAAGAAAGAAGGGGAG	57.478	33.333	0.00	0.00	0.00	4.30
456	459	9.740710	CTAATAAAAAGAAGAAAGAAGGGGAGA	57.259	33.333	0.00	0.00	0.00	3.71
475	478	9.634021	AGGGGAGAAAATAATGAAAGAGAATAC	57.366	33.333	0.00	0.00	0.00	1.89
492	495	2.843401	TACGCTGTGGTGTGGTATTT	57.157	45.000	0.00	0.00	37.38	1.40
493	496	1.234821	ACGCTGTGGTGTGGTATTTG	58.765	50.000	0.00	0.00	34.60	2.32
494	497	0.109781	CGCTGTGGTGTGGTATTTGC	60.110	55.000	0.00	0.00	0.00	3.68
495	498	0.958091	GCTGTGGTGTGGTATTTGCA	59.042	50.000	0.00	0.00	0.00	4.08
496	499	1.545582	GCTGTGGTGTGGTATTTGCAT	59.454	47.619	0.00	0.00	0.00	3.96
497	500	2.752354	GCTGTGGTGTGGTATTTGCATA	59.248	45.455	0.00	0.00	0.00	3.14
566	574	0.041839	GCAGCAACACGAGACACAAG	60.042	55.000	0.00	0.00	0.00	3.16
620	641	1.103398	GCCCCCACATGAGCATACAC	61.103	60.000	0.00	0.00	0.00	2.90
621	642	0.815213	CCCCCACATGAGCATACACG	60.815	60.000	0.00	0.00	0.00	4.49
627	652	1.146930	ATGAGCATACACGGGCAGG	59.853	57.895	0.00	0.00	0.00	4.85
636	661	1.675641	CACGGGCAGGGGAAGAAAG	60.676	63.158	0.00	0.00	0.00	2.62
639	664	0.251165	CGGGCAGGGGAAGAAAGAAA	60.251	55.000	0.00	0.00	0.00	2.52
684	709	5.304778	AGAAAGAAAAGAAGAGTGGAGAGC	58.695	41.667	0.00	0.00	0.00	4.09
690	715	1.614824	AAGAGTGGAGAGCAGGGGG	60.615	63.158	0.00	0.00	0.00	5.40
841	1112	2.531685	CACTCCCACCCTTCCCCA	60.532	66.667	0.00	0.00	0.00	4.96
842	1113	1.930656	CACTCCCACCCTTCCCCAT	60.931	63.158	0.00	0.00	0.00	4.00
843	1114	1.619669	ACTCCCACCCTTCCCCATC	60.620	63.158	0.00	0.00	0.00	3.51
844	1115	1.308216	CTCCCACCCTTCCCCATCT	60.308	63.158	0.00	0.00	0.00	2.90
845	1116	1.307866	TCCCACCCTTCCCCATCTC	60.308	63.158	0.00	0.00	0.00	2.75
886	1157	0.930726	TCTTCTCCCCTCTCCTCTCC	59.069	60.000	0.00	0.00	0.00	3.71
887	1158	0.933700	CTTCTCCCCTCTCCTCTCCT	59.066	60.000	0.00	0.00	0.00	3.69
889	1160	0.047176	TCTCCCCTCTCCTCTCCTCT	59.953	60.000	0.00	0.00	0.00	3.69
890	1161	0.478507	CTCCCCTCTCCTCTCCTCTC	59.521	65.000	0.00	0.00	0.00	3.20
891	1162	0.253868	TCCCCTCTCCTCTCCTCTCA	60.254	60.000	0.00	0.00	0.00	3.27
892	1163	0.106217	CCCCTCTCCTCTCCTCTCAC	60.106	65.000	0.00	0.00	0.00	3.51
893	1164	0.106217	CCCTCTCCTCTCCTCTCACC	60.106	65.000	0.00	0.00	0.00	4.02
894	1165	0.106217	CCTCTCCTCTCCTCTCACCC	60.106	65.000	0.00	0.00	0.00	4.61
895	1166	0.106217	CTCTCCTCTCCTCTCACCCC	60.106	65.000	0.00	0.00	0.00	4.95
926	1197	2.963854	CAATCATCCGCGCTCGCT	60.964	61.111	5.56	0.00	39.32	4.93
962	1238	1.392710	AATCGAATCGGCCGGACTCT	61.393	55.000	27.83	5.07	0.00	3.24
965	1241	2.754658	AATCGGCCGGACTCTCGT	60.755	61.111	27.83	0.00	0.00	4.18
975	1251	3.008330	CCGGACTCTCGTCTTCTTCTTA	58.992	50.000	0.00	0.00	40.10	2.10
989	1268	7.815068	CGTCTTCTTCTTATTCTTCTTCTTCCA	59.185	37.037	0.00	0.00	0.00	3.53
1223	1502	4.189188	CGGGTACGAGCAGTCCGG	62.189	72.222	0.00	0.00	44.60	5.14
1344	1632	1.789523	CCTTCGAGGAGGGGTTCATA	58.210	55.000	0.00	0.00	37.67	2.15
1606	1903	4.789075	GCGCCGCCGAGTCTTACA	62.789	66.667	0.00	0.00	36.29	2.41
1944	2241	3.322466	CACCCCAAGCTCGACCCT	61.322	66.667	0.00	0.00	0.00	4.34
2221	2518	1.745489	CTCCCCAAGTACGCCAAGC	60.745	63.158	0.00	0.00	0.00	4.01
2868	3189	3.502123	TCGATTCCTTGGTTCTTTGGT	57.498	42.857	0.00	0.00	0.00	3.67
2872	3193	1.961793	TCCTTGGTTCTTTGGTCACG	58.038	50.000	0.00	0.00	0.00	4.35
3021	3349	4.218686	AAGCGGTTGCCCCCAAGT	62.219	61.111	0.00	0.00	44.31	3.16
3155	3496	7.003482	AGTTAGGGTAGTAATACTAGTGGAGC	58.997	42.308	5.39	0.00	30.12	4.70
3165	3506	1.930914	ACTAGTGGAGCTTAGGGAGGA	59.069	52.381	0.00	0.00	0.00	3.71
3191	3532	1.609061	GCTTGAAGCTCTGGCACTGTA	60.609	52.381	10.44	0.00	41.70	2.74
3378	3737	6.974965	TCACTGTCATGTCATATAGTAGCAG	58.025	40.000	0.00	0.00	0.00	4.24
3511	3878	2.691409	AATTCAATTCGGAGCTCGGA	57.309	45.000	19.12	19.12	39.77	4.55
3639	4006	2.595386	GTGTGAAAATTCGTGGGCATC	58.405	47.619	0.00	0.00	0.00	3.91
3658	4025	1.513158	CGACATTGGAGGAGCTCGT	59.487	57.895	9.04	9.04	0.00	4.18
3668	4035	3.411351	GAGCTCGTGCGCCGAAAA	61.411	61.111	18.95	1.26	46.75	2.29
3669	4036	2.950172	GAGCTCGTGCGCCGAAAAA	61.950	57.895	18.95	0.95	46.75	1.94
3670	4037	2.499732	GCTCGTGCGCCGAAAAAG	60.500	61.111	18.95	10.41	46.75	2.27
3671	4038	2.950172	GCTCGTGCGCCGAAAAAGA	61.950	57.895	18.95	1.79	46.75	2.52
3672	4039	1.154654	CTCGTGCGCCGAAAAAGAC	60.155	57.895	18.95	1.65	46.75	3.01
3782	4156	8.947115	GTAAAAACTCTACCAAATCTAGCACAT	58.053	33.333	0.00	0.00	0.00	3.21
3805	4179	5.363939	TGCATCACACATTCGACCATATTA	58.636	37.500	0.00	0.00	0.00	0.98
3814	4188	6.039270	CACATTCGACCATATTACACCCAAAT	59.961	38.462	0.00	0.00	0.00	2.32
3816	4190	7.227910	ACATTCGACCATATTACACCCAAATAC	59.772	37.037	0.00	0.00	0.00	1.89

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	54	7.736893	ACAAGTTTAGTTAGTCAGGTTCTCAT	58.263	34.615	0.00	0.00	0.00	2.90
101	103	1.903404	CTGTGGACCCCAACCAAGC	60.903	63.158	0.00	0.00	39.22	4.01
104	106	2.457323	GGACTGTGGACCCCAACCA	61.457	63.158	0.00	0.00	34.18	3.67
145	147	6.491403	ACATTTCTTTCTCCAGTTTATGCAGT	59.509	34.615	0.00	0.00	0.00	4.40
156	158	6.721318	AGCTGGTATTACATTTCTTTCTCCA	58.279	36.000	0.00	0.00	0.00	3.86
162	164	8.947115	GTTTACAGAGCTGGTATTACATTTCTT	58.053	33.333	0.00	0.00	34.19	2.52
164	166	8.494016	AGTTTACAGAGCTGGTATTACATTTC	57.506	34.615	0.00	0.00	34.19	2.17
264	266	2.261037	TTGCTGGCAATTTCGATTCG	57.739	45.000	3.72	0.00	0.00	3.34
269	271	3.065655	TCCATTTTTGCTGGCAATTTCG	58.934	40.909	8.86	0.00	35.70	3.46
324	326	9.440761	AAGGGATTCTAGATTAGTTCAGTACAT	57.559	33.333	0.00	0.00	0.00	2.29
455	458	9.214953	CACAGCGTATTCTCTTTCATTATTTTC	57.785	33.333	0.00	0.00	0.00	2.29
456	459	8.184192	CCACAGCGTATTCTCTTTCATTATTTT	58.816	33.333	0.00	0.00	0.00	1.82
475	478	0.109781	GCAAATACCACACCACAGCG	60.110	55.000	0.00	0.00	0.00	5.18
492	495	1.897423	CCAGGTCGACAGGTATGCA	59.103	57.895	18.91	0.00	0.00	3.96
493	496	1.521681	GCCAGGTCGACAGGTATGC	60.522	63.158	22.42	10.85	0.00	3.14
494	497	0.179100	CTGCCAGGTCGACAGGTATG	60.179	60.000	22.42	11.12	0.00	2.39
495	498	1.961180	GCTGCCAGGTCGACAGGTAT	61.961	60.000	22.42	0.27	31.94	2.73
496	499	2.646175	GCTGCCAGGTCGACAGGTA	61.646	63.158	22.42	18.53	31.94	3.08
497	500	4.008933	GCTGCCAGGTCGACAGGT	62.009	66.667	22.42	3.63	31.94	4.00
499	502	2.104859	CATGCTGCCAGGTCGACAG	61.105	63.158	18.91	9.10	34.48	3.51
501	504	2.578163	TAGCATGCTGCCAGGTCGAC	62.578	60.000	30.42	7.13	46.52	4.20
502	505	1.689243	ATAGCATGCTGCCAGGTCGA	61.689	55.000	30.42	7.00	46.52	4.20
503	506	0.816825	AATAGCATGCTGCCAGGTCG	60.817	55.000	30.42	0.00	46.52	4.79
504	507	0.666913	CAATAGCATGCTGCCAGGTC	59.333	55.000	30.42	0.00	46.52	3.85
505	508	0.754217	CCAATAGCATGCTGCCAGGT	60.754	55.000	30.42	4.34	46.52	4.00
506	509	0.754217	ACCAATAGCATGCTGCCAGG	60.754	55.000	30.42	25.00	46.52	4.45
507	510	1.108776	AACCAATAGCATGCTGCCAG	58.891	50.000	30.42	17.70	46.52	4.85
566	574	2.550978	TCACTACCCGCGTACTAGTAC	58.449	52.381	21.06	21.06	0.00	2.73
620	641	0.251165	TTTCTTTCTTCCCCTGCCCG	60.251	55.000	0.00	0.00	0.00	6.13
621	642	2.009681	TTTTCTTTCTTCCCCTGCCC	57.990	50.000	0.00	0.00	0.00	5.36
642	667	7.048512	TCTTTCTTTTTCTTCTCGTCTCCTTT	58.951	34.615	0.00	0.00	0.00	3.11
643	668	6.583562	TCTTTCTTTTTCTTCTCGTCTCCTT	58.416	36.000	0.00	0.00	0.00	3.36
684	709	4.778143	CGCGTTCCCTTCCCCCTG	62.778	72.222	0.00	0.00	0.00	4.45
707	957	4.087892	CACTCCCCCACTCCAGCG	62.088	72.222	0.00	0.00	0.00	5.18
708	958	2.607750	TCACTCCCCCACTCCAGC	60.608	66.667	0.00	0.00	0.00	4.85
841	1112	5.300034	GTGACTGAGTGAGATGAGATGAGAT	59.700	44.000	0.00	0.00	0.00	2.75
842	1113	4.639755	GTGACTGAGTGAGATGAGATGAGA	59.360	45.833	0.00	0.00	0.00	3.27
843	1114	4.641541	AGTGACTGAGTGAGATGAGATGAG	59.358	45.833	0.00	0.00	0.00	2.90
844	1115	4.598022	AGTGACTGAGTGAGATGAGATGA	58.402	43.478	0.00	0.00	0.00	2.92
845	1116	4.987408	AGTGACTGAGTGAGATGAGATG	57.013	45.455	0.00	0.00	0.00	2.90
886	1157	0.184933	TTGTGGGTTTGGGGTGAGAG	59.815	55.000	0.00	0.00	0.00	3.20
887	1158	0.106419	GTTGTGGGTTTGGGGTGAGA	60.106	55.000	0.00	0.00	0.00	3.27
889	1160	1.454111	CGTTGTGGGTTTGGGGTGA	60.454	57.895	0.00	0.00	0.00	4.02
890	1161	3.124686	CGTTGTGGGTTTGGGGTG	58.875	61.111	0.00	0.00	0.00	4.61
891	1162	2.835895	GCGTTGTGGGTTTGGGGT	60.836	61.111	0.00	0.00	0.00	4.95
892	1163	3.611674	GGCGTTGTGGGTTTGGGG	61.612	66.667	0.00	0.00	0.00	4.96
893	1164	1.753368	ATTGGCGTTGTGGGTTTGGG	61.753	55.000	0.00	0.00	0.00	4.12
894	1165	0.319469	GATTGGCGTTGTGGGTTTGG	60.319	55.000	0.00	0.00	0.00	3.28
895	1166	0.387202	TGATTGGCGTTGTGGGTTTG	59.613	50.000	0.00	0.00	0.00	2.93
962	1238	8.030106	GGAAGAAGAAGAATAAGAAGAAGACGA	58.970	37.037	0.00	0.00	0.00	4.20
965	1241	9.717942	CTTGGAAGAAGAAGAATAAGAAGAAGA	57.282	33.333	0.00	0.00	0.00	2.87
975	1251	5.192176	GCTGATCCTTGGAAGAAGAAGAAT	58.808	41.667	0.00	0.00	0.00	2.40
989	1268	0.829333	AGTCTGCATCGCTGATCCTT	59.171	50.000	0.00	0.00	38.63	3.36
1029	1308	2.114616	GATGAAGAGGCAGAGGAGGAA	58.885	52.381	0.00	0.00	0.00	3.36
1248	1527	2.993008	CTGCTGCTCCCCTGCTTA	59.007	61.111	0.00	0.00	38.99	3.09
1344	1632	1.079819	CCGCTCGAGGACATTGTGT	60.080	57.895	15.58	0.00	0.00	3.72
1602	1899	1.302192	GGTGAAGCGGCAGGTGTAA	60.302	57.895	1.45	0.00	0.00	2.41
1606	1903	4.379243	CTCGGTGAAGCGGCAGGT	62.379	66.667	1.45	0.00	0.00	4.00
1658	1955	0.327259	GGTCTTAGGGAAAACCGGCT	59.673	55.000	0.00	0.00	46.96	5.52
1944	2241	2.676822	AAGAGCTCGCCGGAGACA	60.677	61.111	5.05	0.00	43.27	3.41
2221	2518	1.534805	CCACATCATCTCCGACGAGTG	60.535	57.143	0.00	0.00	37.40	3.51
3021	3349	1.269569	CGCCGCTAACTGTATCCATGA	60.270	52.381	0.00	0.00	0.00	3.07
3093	3427	5.831525	ACTAAGGGTAAAAGGTGAAAAGGTG	59.168	40.000	0.00	0.00	0.00	4.00
3155	3496	3.370104	TCAAGCTCTCTTCCTCCCTAAG	58.630	50.000	0.00	0.00	0.00	2.18
3191	3532	1.536418	TCAGCACCCCTGTACAGCT	60.536	57.895	17.86	9.05	42.38	4.24
3573	3940	4.953667	TGCATGCAAAAAGGTTTCATGTA	58.046	34.783	20.30	0.00	36.13	2.29
3574	3941	3.806380	TGCATGCAAAAAGGTTTCATGT	58.194	36.364	20.30	0.00	36.13	3.21
3576	3943	4.706035	TCTTGCATGCAAAAAGGTTTCAT	58.294	34.783	31.37	0.00	35.33	2.57
3639	4006	1.227089	CGAGCTCCTCCAATGTCGG	60.227	63.158	8.47	0.00	0.00	4.79
3658	4025	2.279582	TTTTTGTCTTTTTCGGCGCA	57.720	40.000	10.83	0.00	0.00	6.09
3664	4031	9.528018	TGTTCATACCTGATTTTTGTCTTTTTC	57.472	29.630	0.00	0.00	0.00	2.29
3667	4034	9.480053	CAATGTTCATACCTGATTTTTGTCTTT	57.520	29.630	0.00	0.00	0.00	2.52
3668	4035	8.641541	ACAATGTTCATACCTGATTTTTGTCTT	58.358	29.630	0.00	0.00	28.67	3.01
3669	4036	8.084073	CACAATGTTCATACCTGATTTTTGTCT	58.916	33.333	0.00	0.00	30.66	3.41
3670	4037	7.867403	ACACAATGTTCATACCTGATTTTTGTC	59.133	33.333	0.00	0.00	30.66	3.18
3671	4038	7.725251	ACACAATGTTCATACCTGATTTTTGT	58.275	30.769	0.00	0.00	32.00	2.83
3672	4039	8.592105	AACACAATGTTCATACCTGATTTTTG	57.408	30.769	0.00	0.00	35.27	2.44
3782	4156	2.112380	ATGGTCGAATGTGTGATGCA	57.888	45.000	0.00	0.00	0.00	3.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.