Multiple sequence alignment - TraesCS5D01G038300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G038300 chr5D 100.000 4007 0 0 1 4007 37195064 37191058 0.000000e+00 7400.0
1 TraesCS5D01G038300 chr5D 91.785 1193 89 6 1886 3075 430442231 430443417 0.000000e+00 1652.0
2 TraesCS5D01G038300 chr5D 91.658 983 73 5 862 1843 430441254 430442228 0.000000e+00 1352.0
3 TraesCS5D01G038300 chr5A 94.135 3137 125 27 851 3958 26157012 26153906 0.000000e+00 4719.0
4 TraesCS5D01G038300 chr5A 92.351 1072 71 7 849 1917 545973800 545974863 0.000000e+00 1515.0
5 TraesCS5D01G038300 chr5A 91.904 1087 50 5 1992 3075 545981317 545982368 0.000000e+00 1485.0
6 TraesCS5D01G038300 chr5A 92.814 167 8 3 670 833 26157246 26157081 5.180000e-59 239.0
7 TraesCS5D01G038300 chr5A 82.787 122 3 7 459 562 26157484 26157363 4.260000e-15 93.5
8 TraesCS5D01G038300 chr7A 92.373 2583 152 29 848 3408 116115952 116113393 0.000000e+00 3637.0
9 TraesCS5D01G038300 chr7A 97.297 37 1 0 3971 4007 608509120 608509156 3.340000e-06 63.9
10 TraesCS5D01G038300 chr4D 92.278 2577 142 31 848 3408 9318829 9316294 0.000000e+00 3603.0
11 TraesCS5D01G038300 chr4D 82.040 657 73 24 2762 3405 9324477 9325101 5.940000e-143 518.0
12 TraesCS5D01G038300 chr7B 92.108 2585 159 27 848 3408 70483451 70480888 0.000000e+00 3602.0
13 TraesCS5D01G038300 chr7B 86.445 391 37 9 1 390 187999332 187999707 8.010000e-112 414.0
14 TraesCS5D01G038300 chr7B 87.569 362 31 12 37 389 136390357 136390001 1.340000e-109 407.0
15 TraesCS5D01G038300 chr7B 81.250 224 39 3 3179 3401 99799841 99800062 1.140000e-40 178.0
16 TraesCS5D01G038300 chr7D 92.123 2577 145 32 848 3408 111049816 111047282 0.000000e+00 3581.0
17 TraesCS5D01G038300 chr5B 89.920 1121 103 7 1958 3075 519642192 519643305 0.000000e+00 1435.0
18 TraesCS5D01G038300 chr5B 90.284 669 56 8 862 1529 519614632 519615292 0.000000e+00 867.0
19 TraesCS5D01G038300 chr5B 90.026 391 35 4 1 389 638641364 638640976 1.660000e-138 503.0
20 TraesCS5D01G038300 chr5B 84.356 326 27 14 69 389 24051504 24051810 8.420000e-77 298.0
21 TraesCS5D01G038300 chr5B 97.222 36 1 0 3971 4006 355618103 355618068 1.200000e-05 62.1
22 TraesCS5D01G038300 chr3D 86.805 773 91 6 1172 1938 580546711 580547478 0.000000e+00 852.0
23 TraesCS5D01G038300 chr3D 83.571 140 18 4 3481 3616 500223891 500223753 4.200000e-25 126.0
24 TraesCS5D01G038300 chr3A 86.028 773 94 6 1172 1941 716090829 716091590 0.000000e+00 817.0
25 TraesCS5D01G038300 chr3A 92.857 42 1 2 3967 4007 208387220 208387180 4.320000e-05 60.2
26 TraesCS5D01G038300 chr3A 92.857 42 2 1 3966 4007 330050621 330050661 4.320000e-05 60.2
27 TraesCS5D01G038300 chr4B 87.147 389 29 7 1 389 44919024 44918657 4.790000e-114 422.0
28 TraesCS5D01G038300 chr6B 88.197 305 31 5 1 303 6613414 6613715 3.810000e-95 359.0
29 TraesCS5D01G038300 chr6B 87.171 304 33 5 1 303 6667138 6666840 1.380000e-89 340.0
30 TraesCS5D01G038300 chr6B 94.872 39 2 0 3969 4007 34926499 34926537 1.200000e-05 62.1
31 TraesCS5D01G038300 chr2A 83.969 393 29 13 1 389 437158589 437158951 2.960000e-91 346.0
32 TraesCS5D01G038300 chr2A 78.667 225 43 5 3179 3401 187314484 187314705 1.160000e-30 145.0
33 TraesCS5D01G038300 chr1B 89.167 240 23 3 152 389 96451277 96451515 3.030000e-76 296.0
34 TraesCS5D01G038300 chr2B 78.829 222 42 5 3182 3401 232282644 232282426 1.160000e-30 145.0
35 TraesCS5D01G038300 chr6D 97.368 38 1 0 3970 4007 99730299 99730262 9.300000e-07 65.8
36 TraesCS5D01G038300 chr4A 95.122 41 2 0 3967 4007 737710752 737710792 9.300000e-07 65.8
37 TraesCS5D01G038300 chr4A 97.297 37 1 0 3970 4006 698479953 698479917 3.340000e-06 63.9
38 TraesCS5D01G038300 chr4A 97.222 36 1 0 3972 4007 729347500 729347465 1.200000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G038300 chr5D 37191058 37195064 4006 True 7400.000000 7400 100.0000 1 4007 1 chr5D.!!$R1 4006
1 TraesCS5D01G038300 chr5D 430441254 430443417 2163 False 1502.000000 1652 91.7215 862 3075 2 chr5D.!!$F1 2213
2 TraesCS5D01G038300 chr5A 26153906 26157484 3578 True 1683.833333 4719 89.9120 459 3958 3 chr5A.!!$R1 3499
3 TraesCS5D01G038300 chr5A 545973800 545974863 1063 False 1515.000000 1515 92.3510 849 1917 1 chr5A.!!$F1 1068
4 TraesCS5D01G038300 chr5A 545981317 545982368 1051 False 1485.000000 1485 91.9040 1992 3075 1 chr5A.!!$F2 1083
5 TraesCS5D01G038300 chr7A 116113393 116115952 2559 True 3637.000000 3637 92.3730 848 3408 1 chr7A.!!$R1 2560
6 TraesCS5D01G038300 chr4D 9316294 9318829 2535 True 3603.000000 3603 92.2780 848 3408 1 chr4D.!!$R1 2560
7 TraesCS5D01G038300 chr4D 9324477 9325101 624 False 518.000000 518 82.0400 2762 3405 1 chr4D.!!$F1 643
8 TraesCS5D01G038300 chr7B 70480888 70483451 2563 True 3602.000000 3602 92.1080 848 3408 1 chr7B.!!$R1 2560
9 TraesCS5D01G038300 chr7D 111047282 111049816 2534 True 3581.000000 3581 92.1230 848 3408 1 chr7D.!!$R1 2560
10 TraesCS5D01G038300 chr5B 519642192 519643305 1113 False 1435.000000 1435 89.9200 1958 3075 1 chr5B.!!$F3 1117
11 TraesCS5D01G038300 chr5B 519614632 519615292 660 False 867.000000 867 90.2840 862 1529 1 chr5B.!!$F2 667
12 TraesCS5D01G038300 chr3D 580546711 580547478 767 False 852.000000 852 86.8050 1172 1938 1 chr3D.!!$F1 766
13 TraesCS5D01G038300 chr3A 716090829 716091590 761 False 817.000000 817 86.0280 1172 1941 1 chr3A.!!$F2 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 447 0.033228 GCCTCTATGTCTGATGCGCT 59.967 55.0 9.73 0.0 0.00 5.92 F
568 587 0.035739 GACCGCTTCCCCAGTACAAA 59.964 55.0 0.00 0.0 0.00 2.83 F
642 701 0.239082 TGCTCGCTTGAATGCTTGTG 59.761 50.0 0.00 0.0 0.00 3.33 F
644 703 0.520404 CTCGCTTGAATGCTTGTGCT 59.480 50.0 0.00 0.0 40.48 4.40 F
645 704 0.239082 TCGCTTGAATGCTTGTGCTG 59.761 50.0 0.00 0.0 40.48 4.41 F
650 709 0.605050 TGAATGCTTGTGCTGCCGTA 60.605 50.0 0.00 0.0 40.48 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1386 1507 1.160137 GACCTAGTGCAGCAACCTTG 58.840 55.000 0.00 0.00 0.00 3.61 R
2455 2579 1.453155 AACTCGTCATGGCCATCAAC 58.547 50.000 17.61 16.06 0.00 3.18 R
2643 2767 1.070134 GCAGTAGGATCAACGCCCATA 59.930 52.381 0.00 0.00 0.00 2.74 R
2838 2965 1.131638 TTTGAGCAGTGTCCCTGAGT 58.868 50.000 0.00 0.00 44.49 3.41 R
2928 3055 4.077184 GTGGGGATGACGCGGTCA 62.077 66.667 12.47 12.51 46.90 4.02 R
3012 3139 1.471119 AGCAGCAATGTCCAGATTGG 58.529 50.000 0.00 0.00 39.43 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.951706 AATTGAAAACGCAAACAATTTTCTG 57.048 28.000 9.38 0.00 41.07 3.02
28 29 6.712241 TTGAAAACGCAAACAATTTTCTGA 57.288 29.167 9.38 0.00 41.07 3.27
29 30 6.712241 TGAAAACGCAAACAATTTTCTGAA 57.288 29.167 9.38 0.00 41.07 3.02
30 31 7.121974 TGAAAACGCAAACAATTTTCTGAAA 57.878 28.000 0.00 0.00 41.07 2.69
31 32 7.012358 TGAAAACGCAAACAATTTTCTGAAAC 58.988 30.769 1.58 0.00 41.07 2.78
32 33 6.720012 AAACGCAAACAATTTTCTGAAACT 57.280 29.167 1.58 0.00 0.00 2.66
33 34 5.949233 ACGCAAACAATTTTCTGAAACTC 57.051 34.783 1.58 0.00 0.00 3.01
34 35 5.650543 ACGCAAACAATTTTCTGAAACTCT 58.349 33.333 1.58 0.00 0.00 3.24
35 36 5.516339 ACGCAAACAATTTTCTGAAACTCTG 59.484 36.000 1.58 3.45 0.00 3.35
36 37 5.051508 CGCAAACAATTTTCTGAAACTCTGG 60.052 40.000 1.58 0.00 0.00 3.86
37 38 6.042143 GCAAACAATTTTCTGAAACTCTGGA 58.958 36.000 1.58 0.00 0.00 3.86
38 39 6.534793 GCAAACAATTTTCTGAAACTCTGGAA 59.465 34.615 1.58 0.00 0.00 3.53
39 40 7.464577 GCAAACAATTTTCTGAAACTCTGGAAC 60.465 37.037 1.58 0.00 0.00 3.62
40 41 6.773976 ACAATTTTCTGAAACTCTGGAACA 57.226 33.333 1.58 0.00 0.00 3.18
41 42 7.169158 ACAATTTTCTGAAACTCTGGAACAA 57.831 32.000 1.58 0.00 38.70 2.83
42 43 7.610865 ACAATTTTCTGAAACTCTGGAACAAA 58.389 30.769 1.58 0.00 38.70 2.83
43 44 8.093927 ACAATTTTCTGAAACTCTGGAACAAAA 58.906 29.630 1.58 0.00 38.70 2.44
44 45 9.101655 CAATTTTCTGAAACTCTGGAACAAAAT 57.898 29.630 1.58 0.00 38.70 1.82
45 46 9.671279 AATTTTCTGAAACTCTGGAACAAAATT 57.329 25.926 1.58 0.00 38.70 1.82
46 47 9.671279 ATTTTCTGAAACTCTGGAACAAAATTT 57.329 25.926 1.58 0.00 38.70 1.82
47 48 8.477984 TTTCTGAAACTCTGGAACAAAATTTG 57.522 30.769 3.89 3.89 38.70 2.32
48 49 6.572519 TCTGAAACTCTGGAACAAAATTTGG 58.427 36.000 10.71 0.00 38.70 3.28
49 50 6.379703 TCTGAAACTCTGGAACAAAATTTGGA 59.620 34.615 10.71 0.00 38.70 3.53
50 51 6.940739 TGAAACTCTGGAACAAAATTTGGAA 58.059 32.000 10.71 0.00 38.70 3.53
51 52 7.390027 TGAAACTCTGGAACAAAATTTGGAAA 58.610 30.769 10.71 0.00 38.70 3.13
52 53 7.333174 TGAAACTCTGGAACAAAATTTGGAAAC 59.667 33.333 10.71 0.00 38.70 2.78
53 54 6.293004 ACTCTGGAACAAAATTTGGAAACA 57.707 33.333 10.71 3.14 38.70 2.83
54 55 6.106003 ACTCTGGAACAAAATTTGGAAACAC 58.894 36.000 10.71 0.00 38.08 3.32
55 56 5.105752 TCTGGAACAAAATTTGGAAACACG 58.894 37.500 10.71 0.00 38.08 4.49
56 57 5.073311 TGGAACAAAATTTGGAAACACGA 57.927 34.783 10.71 0.00 35.28 4.35
57 58 5.479306 TGGAACAAAATTTGGAAACACGAA 58.521 33.333 10.71 0.00 35.28 3.85
58 59 5.348997 TGGAACAAAATTTGGAAACACGAAC 59.651 36.000 10.71 0.00 35.28 3.95
59 60 5.348997 GGAACAAAATTTGGAAACACGAACA 59.651 36.000 10.71 0.00 42.67 3.18
60 61 6.128526 GGAACAAAATTTGGAAACACGAACAA 60.129 34.615 10.71 0.00 42.67 2.83
61 62 6.787085 ACAAAATTTGGAAACACGAACAAA 57.213 29.167 10.71 0.00 42.67 2.83
62 63 7.371126 ACAAAATTTGGAAACACGAACAAAT 57.629 28.000 10.71 0.00 43.20 2.32
67 68 8.666580 AATTTGGAAACACGAACAAATTTTTG 57.333 26.923 8.03 1.56 45.81 2.44
68 69 7.421530 TTTGGAAACACGAACAAATTTTTGA 57.578 28.000 9.88 0.00 42.67 2.69
69 70 7.421530 TTGGAAACACGAACAAATTTTTGAA 57.578 28.000 9.88 0.00 42.67 2.69
70 71 7.421530 TGGAAACACGAACAAATTTTTGAAA 57.578 28.000 9.88 0.00 37.19 2.69
71 72 7.861630 TGGAAACACGAACAAATTTTTGAAAA 58.138 26.923 9.88 0.00 37.19 2.29
72 73 8.507249 TGGAAACACGAACAAATTTTTGAAAAT 58.493 25.926 9.88 0.00 37.19 1.82
73 74 8.994881 GGAAACACGAACAAATTTTTGAAAATC 58.005 29.630 9.88 2.64 40.55 2.17
74 75 8.580868 AAACACGAACAAATTTTTGAAAATCG 57.419 26.923 9.88 13.73 40.55 3.34
75 76 7.513190 ACACGAACAAATTTTTGAAAATCGA 57.487 28.000 13.78 0.00 40.55 3.59
76 77 7.954447 ACACGAACAAATTTTTGAAAATCGAA 58.046 26.923 13.78 0.00 40.55 3.71
77 78 7.895767 ACACGAACAAATTTTTGAAAATCGAAC 59.104 29.630 13.78 2.09 40.55 3.95
78 79 7.895259 CACGAACAAATTTTTGAAAATCGAACA 59.105 29.630 13.78 0.00 40.55 3.18
79 80 8.599774 ACGAACAAATTTTTGAAAATCGAACAT 58.400 25.926 13.78 0.00 40.55 2.71
80 81 9.419737 CGAACAAATTTTTGAAAATCGAACATT 57.580 25.926 9.88 0.00 40.55 2.71
210 211 9.757227 TGAAACAGAAACAGAAAAAGAAAAAGA 57.243 25.926 0.00 0.00 0.00 2.52
260 261 4.725490 CTTCTAGAAGGTTCCCAAAACCA 58.275 43.478 22.67 0.00 42.69 3.67
261 262 4.367039 TCTAGAAGGTTCCCAAAACCAG 57.633 45.455 9.45 0.00 42.69 4.00
262 263 3.977999 TCTAGAAGGTTCCCAAAACCAGA 59.022 43.478 9.45 1.05 42.69 3.86
263 264 3.680777 AGAAGGTTCCCAAAACCAGAA 57.319 42.857 9.45 0.00 42.69 3.02
264 265 3.989056 AGAAGGTTCCCAAAACCAGAAA 58.011 40.909 9.45 0.00 42.69 2.52
265 266 4.358214 AGAAGGTTCCCAAAACCAGAAAA 58.642 39.130 9.45 0.00 42.69 2.29
266 267 4.780554 AGAAGGTTCCCAAAACCAGAAAAA 59.219 37.500 9.45 0.00 42.69 1.94
295 296 2.951229 GAACCCTCAGAAAGTTCCCA 57.049 50.000 2.07 0.00 35.03 4.37
296 297 3.223674 GAACCCTCAGAAAGTTCCCAA 57.776 47.619 2.07 0.00 35.03 4.12
297 298 3.562182 GAACCCTCAGAAAGTTCCCAAA 58.438 45.455 2.07 0.00 35.03 3.28
298 299 3.680777 ACCCTCAGAAAGTTCCCAAAA 57.319 42.857 0.00 0.00 0.00 2.44
299 300 3.296854 ACCCTCAGAAAGTTCCCAAAAC 58.703 45.455 0.00 0.00 0.00 2.43
300 301 2.628178 CCCTCAGAAAGTTCCCAAAACC 59.372 50.000 0.00 0.00 0.00 3.27
301 302 2.293399 CCTCAGAAAGTTCCCAAAACCG 59.707 50.000 0.00 0.00 0.00 4.44
302 303 2.293399 CTCAGAAAGTTCCCAAAACCGG 59.707 50.000 0.00 0.00 0.00 5.28
309 310 4.958897 CCCAAAACCGGGGCGTGA 62.959 66.667 6.32 0.00 43.21 4.35
310 311 2.907917 CCAAAACCGGGGCGTGAA 60.908 61.111 6.32 0.00 0.00 3.18
311 312 2.491022 CCAAAACCGGGGCGTGAAA 61.491 57.895 6.32 0.00 0.00 2.69
312 313 1.663173 CAAAACCGGGGCGTGAAAT 59.337 52.632 6.32 0.00 0.00 2.17
313 314 0.882474 CAAAACCGGGGCGTGAAATA 59.118 50.000 6.32 0.00 0.00 1.40
314 315 1.474879 CAAAACCGGGGCGTGAAATAT 59.525 47.619 6.32 0.00 0.00 1.28
315 316 1.842052 AAACCGGGGCGTGAAATATT 58.158 45.000 6.32 0.00 0.00 1.28
316 317 1.842052 AACCGGGGCGTGAAATATTT 58.158 45.000 6.32 0.00 0.00 1.40
317 318 2.713863 ACCGGGGCGTGAAATATTTA 57.286 45.000 6.32 0.00 0.00 1.40
318 319 2.291365 ACCGGGGCGTGAAATATTTAC 58.709 47.619 6.32 0.01 0.00 2.01
319 320 1.262151 CCGGGGCGTGAAATATTTACG 59.738 52.381 18.04 18.04 40.52 3.18
320 321 1.935199 CGGGGCGTGAAATATTTACGT 59.065 47.619 20.80 0.00 39.79 3.57
321 322 2.285950 CGGGGCGTGAAATATTTACGTG 60.286 50.000 20.80 7.83 39.79 4.49
322 323 2.937799 GGGGCGTGAAATATTTACGTGA 59.062 45.455 20.80 0.00 39.79 4.35
323 324 3.562557 GGGGCGTGAAATATTTACGTGAT 59.437 43.478 20.80 0.00 39.79 3.06
324 325 4.523813 GGGCGTGAAATATTTACGTGATG 58.476 43.478 20.80 5.76 39.79 3.07
325 326 4.523813 GGCGTGAAATATTTACGTGATGG 58.476 43.478 20.80 3.31 39.79 3.51
326 327 4.523813 GCGTGAAATATTTACGTGATGGG 58.476 43.478 20.80 2.19 39.79 4.00
327 328 4.523813 CGTGAAATATTTACGTGATGGGC 58.476 43.478 15.82 0.00 33.48 5.36
328 329 4.553938 CGTGAAATATTTACGTGATGGGCC 60.554 45.833 15.82 0.00 33.48 5.80
329 330 3.562141 TGAAATATTTACGTGATGGGCCG 59.438 43.478 0.00 0.00 0.00 6.13
330 331 2.178912 ATATTTACGTGATGGGCCGG 57.821 50.000 0.00 0.00 0.00 6.13
331 332 0.533308 TATTTACGTGATGGGCCGGC 60.533 55.000 21.18 21.18 0.00 6.13
332 333 4.823419 TTACGTGATGGGCCGGCG 62.823 66.667 22.54 7.07 0.00 6.46
338 339 4.270376 GATGGGCCGGCGCAAATC 62.270 66.667 44.11 34.24 42.05 2.17
348 349 4.271170 CGCAAATCGCTCGCTCGG 62.271 66.667 0.00 0.00 39.08 4.63
349 350 3.929948 GCAAATCGCTCGCTCGGG 61.930 66.667 0.00 0.00 37.77 5.14
350 351 2.509336 CAAATCGCTCGCTCGGGT 60.509 61.111 0.00 0.00 0.00 5.28
351 352 2.202756 AAATCGCTCGCTCGGGTC 60.203 61.111 0.00 0.00 0.00 4.46
352 353 4.554363 AATCGCTCGCTCGGGTCG 62.554 66.667 0.00 0.00 0.00 4.79
359 360 4.883300 CGCTCGGGTCGCTCGTAC 62.883 72.222 0.00 0.00 0.00 3.67
360 361 4.883300 GCTCGGGTCGCTCGTACG 62.883 72.222 9.53 9.53 0.00 3.67
361 362 4.233635 CTCGGGTCGCTCGTACGG 62.234 72.222 16.52 7.41 0.00 4.02
369 370 4.143363 GCTCGTACGGGCGTTTGC 62.143 66.667 26.35 9.19 41.71 3.68
370 371 2.431942 CTCGTACGGGCGTTTGCT 60.432 61.111 16.52 0.00 42.25 3.91
371 372 2.431260 TCGTACGGGCGTTTGCTC 60.431 61.111 16.52 0.00 42.25 4.26
377 378 2.665185 GGGCGTTTGCTCGACAGT 60.665 61.111 5.00 0.00 41.04 3.55
378 379 2.251642 GGGCGTTTGCTCGACAGTT 61.252 57.895 5.00 0.00 41.04 3.16
379 380 1.647084 GGCGTTTGCTCGACAGTTT 59.353 52.632 1.31 0.00 42.25 2.66
380 381 0.657368 GGCGTTTGCTCGACAGTTTG 60.657 55.000 1.31 0.00 42.25 2.93
381 382 0.303493 GCGTTTGCTCGACAGTTTGA 59.697 50.000 1.31 0.00 38.39 2.69
382 383 1.915965 GCGTTTGCTCGACAGTTTGAC 60.916 52.381 1.31 0.00 38.39 3.18
383 384 1.653679 CGTTTGCTCGACAGTTTGACG 60.654 52.381 0.00 0.00 36.91 4.35
384 385 0.303493 TTTGCTCGACAGTTTGACGC 59.697 50.000 0.00 0.00 35.65 5.19
385 386 0.808060 TTGCTCGACAGTTTGACGCA 60.808 50.000 0.00 0.00 35.65 5.24
386 387 1.215014 TGCTCGACAGTTTGACGCAG 61.215 55.000 0.00 0.00 35.65 5.18
387 388 0.939577 GCTCGACAGTTTGACGCAGA 60.940 55.000 0.00 0.00 35.65 4.26
388 389 1.056103 CTCGACAGTTTGACGCAGAG 58.944 55.000 0.00 0.00 35.65 3.35
389 390 0.384309 TCGACAGTTTGACGCAGAGT 59.616 50.000 0.00 0.00 35.65 3.24
400 401 0.312416 ACGCAGAGTCATATCGAGGC 59.688 55.000 0.00 0.00 0.00 4.70
401 402 0.387878 CGCAGAGTCATATCGAGGCC 60.388 60.000 0.00 0.00 0.00 5.19
402 403 0.387878 GCAGAGTCATATCGAGGCCG 60.388 60.000 0.00 0.00 37.07 6.13
403 404 0.242286 CAGAGTCATATCGAGGCCGG 59.758 60.000 0.00 0.00 36.24 6.13
404 405 1.080434 GAGTCATATCGAGGCCGGC 60.080 63.158 21.18 21.18 36.24 6.13
405 406 1.528292 GAGTCATATCGAGGCCGGCT 61.528 60.000 28.56 12.77 36.24 5.52
406 407 0.251209 AGTCATATCGAGGCCGGCTA 60.251 55.000 28.56 11.01 36.24 3.93
407 408 0.109226 GTCATATCGAGGCCGGCTAC 60.109 60.000 28.56 19.01 36.24 3.58
408 409 0.251209 TCATATCGAGGCCGGCTACT 60.251 55.000 28.56 16.62 36.24 2.57
409 410 1.003928 TCATATCGAGGCCGGCTACTA 59.996 52.381 28.56 12.94 36.24 1.82
410 411 1.132643 CATATCGAGGCCGGCTACTAC 59.867 57.143 28.56 9.28 36.24 2.73
411 412 0.607489 TATCGAGGCCGGCTACTACC 60.607 60.000 28.56 8.41 36.24 3.18
419 420 2.107141 GGCTACTACCGCCTGCTG 59.893 66.667 0.00 0.00 44.17 4.41
420 421 2.423898 GGCTACTACCGCCTGCTGA 61.424 63.158 0.00 0.00 44.17 4.26
421 422 1.066587 GCTACTACCGCCTGCTGAG 59.933 63.158 0.00 0.00 0.00 3.35
422 423 1.736586 CTACTACCGCCTGCTGAGG 59.263 63.158 0.00 0.00 43.19 3.86
438 439 3.863606 GGCGAGGCCTCTATGTCT 58.136 61.111 29.73 0.00 46.69 3.41
439 440 1.365633 GGCGAGGCCTCTATGTCTG 59.634 63.158 29.73 13.75 46.69 3.51
440 441 1.109920 GGCGAGGCCTCTATGTCTGA 61.110 60.000 29.73 0.00 46.69 3.27
441 442 0.965439 GCGAGGCCTCTATGTCTGAT 59.035 55.000 29.73 0.00 0.00 2.90
442 443 1.336702 GCGAGGCCTCTATGTCTGATG 60.337 57.143 29.73 11.55 0.00 3.07
443 444 1.336702 CGAGGCCTCTATGTCTGATGC 60.337 57.143 29.73 0.00 0.00 3.91
444 445 0.678395 AGGCCTCTATGTCTGATGCG 59.322 55.000 0.00 0.00 0.00 4.73
445 446 0.948141 GGCCTCTATGTCTGATGCGC 60.948 60.000 0.00 0.00 0.00 6.09
446 447 0.033228 GCCTCTATGTCTGATGCGCT 59.967 55.000 9.73 0.00 0.00 5.92
447 448 1.780806 CCTCTATGTCTGATGCGCTG 58.219 55.000 9.73 0.00 0.00 5.18
448 449 1.604947 CCTCTATGTCTGATGCGCTGG 60.605 57.143 9.73 0.00 0.00 4.85
449 450 1.068281 CTCTATGTCTGATGCGCTGGT 59.932 52.381 9.73 0.00 0.00 4.00
450 451 1.202452 TCTATGTCTGATGCGCTGGTG 60.202 52.381 9.73 0.00 0.00 4.17
451 452 0.823460 TATGTCTGATGCGCTGGTGA 59.177 50.000 9.73 0.00 0.00 4.02
452 453 0.742281 ATGTCTGATGCGCTGGTGAC 60.742 55.000 9.73 12.54 0.00 3.67
453 454 1.374631 GTCTGATGCGCTGGTGACA 60.375 57.895 9.73 0.00 39.59 3.58
454 455 1.374631 TCTGATGCGCTGGTGACAC 60.375 57.895 9.73 0.00 35.60 3.67
455 456 2.733671 CTGATGCGCTGGTGACACG 61.734 63.158 9.73 0.00 37.72 4.49
480 481 3.028130 CGGCCCAATACAAACCCTATTT 58.972 45.455 0.00 0.00 0.00 1.40
518 523 2.867855 AACGAACGAGCTGCTCCCA 61.868 57.895 22.97 0.00 0.00 4.37
564 583 3.766691 GCGACCGCTTCCCCAGTA 61.767 66.667 7.19 0.00 38.26 2.74
565 584 2.183555 CGACCGCTTCCCCAGTAC 59.816 66.667 0.00 0.00 0.00 2.73
566 585 2.642254 CGACCGCTTCCCCAGTACA 61.642 63.158 0.00 0.00 0.00 2.90
568 587 0.035739 GACCGCTTCCCCAGTACAAA 59.964 55.000 0.00 0.00 0.00 2.83
570 589 0.958876 CCGCTTCCCCAGTACAAACC 60.959 60.000 0.00 0.00 0.00 3.27
571 590 0.958876 CGCTTCCCCAGTACAAACCC 60.959 60.000 0.00 0.00 0.00 4.11
572 591 0.404426 GCTTCCCCAGTACAAACCCT 59.596 55.000 0.00 0.00 0.00 4.34
573 592 1.631898 GCTTCCCCAGTACAAACCCTA 59.368 52.381 0.00 0.00 0.00 3.53
575 594 3.308904 GCTTCCCCAGTACAAACCCTATT 60.309 47.826 0.00 0.00 0.00 1.73
577 596 5.330233 CTTCCCCAGTACAAACCCTATTTT 58.670 41.667 0.00 0.00 0.00 1.82
578 597 4.668636 TCCCCAGTACAAACCCTATTTTG 58.331 43.478 0.00 0.00 41.47 2.44
579 598 4.354387 TCCCCAGTACAAACCCTATTTTGA 59.646 41.667 2.70 0.00 38.54 2.69
580 599 4.705023 CCCCAGTACAAACCCTATTTTGAG 59.295 45.833 2.70 0.00 38.54 3.02
581 600 5.321927 CCCAGTACAAACCCTATTTTGAGT 58.678 41.667 2.70 0.00 38.54 3.41
582 601 5.183140 CCCAGTACAAACCCTATTTTGAGTG 59.817 44.000 2.70 1.06 38.54 3.51
584 603 4.765339 AGTACAAACCCTATTTTGAGTGGC 59.235 41.667 2.70 0.00 38.54 5.01
585 604 3.844640 ACAAACCCTATTTTGAGTGGCT 58.155 40.909 2.70 0.00 38.54 4.75
589 608 1.341383 CCCTATTTTGAGTGGCTGGCT 60.341 52.381 2.00 0.00 0.00 4.75
591 610 1.133790 CTATTTTGAGTGGCTGGCTGC 59.866 52.381 7.96 7.96 41.94 5.25
593 612 1.457823 TTTTGAGTGGCTGGCTGCTG 61.458 55.000 16.14 0.00 42.39 4.41
595 614 4.719106 GAGTGGCTGGCTGCTGCT 62.719 66.667 15.64 13.42 42.39 4.24
599 618 4.737177 GGCTGGCTGCTGCTCCTT 62.737 66.667 15.64 0.00 42.39 3.36
600 619 3.441290 GCTGGCTGCTGCTCCTTG 61.441 66.667 15.64 3.09 39.59 3.61
602 621 3.921936 CTGGCTGCTGCTCCTTGCT 62.922 63.158 15.64 0.00 43.37 3.91
603 622 2.270205 GGCTGCTGCTCCTTGCTA 59.730 61.111 15.64 0.00 43.37 3.49
619 678 1.380302 CTACCCCCTTGCTGTGCTT 59.620 57.895 0.00 0.00 0.00 3.91
637 696 2.101770 GGCTGCTCGCTTGAATGC 59.898 61.111 0.00 0.00 39.13 3.56
638 697 2.404995 GGCTGCTCGCTTGAATGCT 61.405 57.895 0.00 0.00 39.13 3.79
639 698 1.505353 GCTGCTCGCTTGAATGCTT 59.495 52.632 0.00 0.00 35.14 3.91
640 699 0.797249 GCTGCTCGCTTGAATGCTTG 60.797 55.000 0.00 0.00 35.14 4.01
641 700 0.520404 CTGCTCGCTTGAATGCTTGT 59.480 50.000 0.00 0.00 0.00 3.16
642 701 0.239082 TGCTCGCTTGAATGCTTGTG 59.761 50.000 0.00 0.00 0.00 3.33
643 702 1.069378 GCTCGCTTGAATGCTTGTGC 61.069 55.000 0.00 0.00 40.20 4.57
644 703 0.520404 CTCGCTTGAATGCTTGTGCT 59.480 50.000 0.00 0.00 40.48 4.40
645 704 0.239082 TCGCTTGAATGCTTGTGCTG 59.761 50.000 0.00 0.00 40.48 4.41
646 705 1.342082 CGCTTGAATGCTTGTGCTGC 61.342 55.000 0.00 0.00 40.48 5.25
647 706 1.012486 GCTTGAATGCTTGTGCTGCC 61.012 55.000 0.00 0.00 40.48 4.85
648 707 0.731514 CTTGAATGCTTGTGCTGCCG 60.732 55.000 0.00 0.00 40.48 5.69
649 708 1.454572 TTGAATGCTTGTGCTGCCGT 61.455 50.000 0.00 0.00 40.48 5.68
650 709 0.605050 TGAATGCTTGTGCTGCCGTA 60.605 50.000 0.00 0.00 40.48 4.02
651 710 0.734889 GAATGCTTGTGCTGCCGTAT 59.265 50.000 0.00 0.00 40.48 3.06
652 711 0.734889 AATGCTTGTGCTGCCGTATC 59.265 50.000 0.00 0.00 40.48 2.24
653 712 1.431488 ATGCTTGTGCTGCCGTATCG 61.431 55.000 0.00 0.00 40.48 2.92
654 713 2.813179 GCTTGTGCTGCCGTATCGG 61.813 63.158 3.67 3.67 42.44 4.18
700 759 1.909700 TCCTTTCTGGTTGTGATGCC 58.090 50.000 0.00 0.00 37.07 4.40
703 762 2.364970 CCTTTCTGGTTGTGATGCCAAA 59.635 45.455 0.00 0.00 33.93 3.28
710 769 5.125900 TCTGGTTGTGATGCCAAATGATTAG 59.874 40.000 0.00 0.00 33.93 1.73
730 789 8.668353 TGATTAGATTTGTGCTTCAACTATGTC 58.332 33.333 0.00 0.00 35.61 3.06
758 817 5.245977 CCATCAACAAAGAAACTGGGGTTAT 59.754 40.000 0.00 0.00 34.90 1.89
763 822 5.464069 ACAAAGAAACTGGGGTTATCCTTT 58.536 37.500 0.00 0.00 34.90 3.11
773 832 5.905088 TGGGGTTATCCTTTTGTCCAATAA 58.095 37.500 0.00 0.00 35.33 1.40
774 833 5.955355 TGGGGTTATCCTTTTGTCCAATAAG 59.045 40.000 0.00 0.00 35.33 1.73
775 834 5.955959 GGGGTTATCCTTTTGTCCAATAAGT 59.044 40.000 0.00 0.00 35.33 2.24
776 835 7.120716 GGGGTTATCCTTTTGTCCAATAAGTA 58.879 38.462 0.00 0.00 35.33 2.24
830 891 5.503927 ACAAGGATTCACTGATAATGCTGT 58.496 37.500 0.00 0.00 35.48 4.40
833 894 3.881688 GGATTCACTGATAATGCTGTGCT 59.118 43.478 0.00 0.00 37.56 4.40
835 896 5.163581 GGATTCACTGATAATGCTGTGCTTT 60.164 40.000 0.00 0.00 37.56 3.51
836 897 4.952262 TCACTGATAATGCTGTGCTTTC 57.048 40.909 0.00 0.00 37.56 2.62
837 898 3.371898 TCACTGATAATGCTGTGCTTTCG 59.628 43.478 0.00 0.00 37.56 3.46
839 900 2.938451 CTGATAATGCTGTGCTTTCGGA 59.062 45.455 0.00 0.00 0.00 4.55
859 971 6.785191 TCGGAAATGATTGCTATGTTCTTTC 58.215 36.000 0.00 0.00 0.00 2.62
936 1049 3.531538 TCTTCACCGGTTTATCTGCATC 58.468 45.455 2.97 0.00 0.00 3.91
997 1113 1.210155 GCCAAGCTTTACAGTGGCG 59.790 57.895 9.01 0.00 46.48 5.69
1042 1158 1.444933 AATCACTGTTGTCCCTCCCA 58.555 50.000 0.00 0.00 0.00 4.37
1176 1292 4.170256 GCTACACTCAGCAGAACTTCTAC 58.830 47.826 0.00 0.00 41.40 2.59
1269 1386 3.664107 TCATGTGCTCTACAACAAGGAC 58.336 45.455 0.00 0.00 43.77 3.85
1386 1507 2.033194 GTACCGGTGCAAGTGCCTC 61.033 63.158 19.93 0.00 41.18 4.70
1422 1543 1.726791 GGTCGCATGTGTACTGTTCTG 59.273 52.381 6.09 0.00 0.00 3.02
1521 1642 4.189231 ACACCCGTACTATCTTGATTTGC 58.811 43.478 0.00 0.00 0.00 3.68
2455 2579 1.676529 CTGCTCAGGATGCTTTCATGG 59.323 52.381 0.00 0.00 36.77 3.66
2527 2651 6.072199 AGATTAGGAAGAAGAAGGCAATGT 57.928 37.500 0.00 0.00 0.00 2.71
2643 2767 1.059098 TGGGCAGACAACTCACATCT 58.941 50.000 0.00 0.00 0.00 2.90
2793 2920 1.153881 GCGTACAAGGTCGAGGTCC 60.154 63.158 0.00 0.00 0.00 4.46
2838 2965 1.150536 GGTTGTGCCAGGTGAAGGA 59.849 57.895 0.00 0.00 37.17 3.36
2949 3076 2.727392 CCGCGTCATCCCCACCTTA 61.727 63.158 4.92 0.00 0.00 2.69
3248 3386 5.378292 TGTTCTGTAGTAAGCTGAGAGTG 57.622 43.478 0.00 0.00 0.00 3.51
3251 3389 4.011023 TCTGTAGTAAGCTGAGAGTGGTC 58.989 47.826 0.00 0.00 0.00 4.02
3286 3426 5.645497 ACTGCACTCTCAAATTGGATTAGTC 59.355 40.000 0.00 0.00 0.00 2.59
3337 3483 3.428045 GCTATCACAAACTGGTCATTGGC 60.428 47.826 0.00 0.00 0.00 4.52
3359 3506 3.620374 CGATGCAAGCACTGTAGATCTTT 59.380 43.478 0.00 0.00 0.00 2.52
3476 3628 8.198778 CCATATGGATGTTGTTGATCAAAATCA 58.801 33.333 17.49 10.74 46.90 2.57
3501 3653 7.725818 TGCTGATTTTGTAAATTGAATGCAA 57.274 28.000 0.00 0.00 38.60 4.08
3502 3654 8.151141 TGCTGATTTTGTAAATTGAATGCAAA 57.849 26.923 0.00 0.00 37.59 3.68
3503 3655 8.784994 TGCTGATTTTGTAAATTGAATGCAAAT 58.215 25.926 0.00 0.00 37.59 2.32
3513 3665 9.202273 GTAAATTGAATGCAAATGTTAGAACCA 57.798 29.630 0.00 0.00 37.59 3.67
3514 3666 7.894376 AATTGAATGCAAATGTTAGAACCAG 57.106 32.000 0.00 0.00 37.59 4.00
3515 3667 4.808558 TGAATGCAAATGTTAGAACCAGC 58.191 39.130 0.00 0.00 0.00 4.85
3516 3668 4.280425 TGAATGCAAATGTTAGAACCAGCA 59.720 37.500 0.00 0.00 35.03 4.41
3517 3669 3.641437 TGCAAATGTTAGAACCAGCAC 57.359 42.857 0.00 0.00 0.00 4.40
3518 3670 3.221771 TGCAAATGTTAGAACCAGCACT 58.778 40.909 0.00 0.00 0.00 4.40
3519 3671 3.004629 TGCAAATGTTAGAACCAGCACTG 59.995 43.478 0.00 0.00 0.00 3.66
3520 3672 3.568538 CAAATGTTAGAACCAGCACTGC 58.431 45.455 0.00 0.00 0.00 4.40
3521 3673 2.867109 ATGTTAGAACCAGCACTGCT 57.133 45.000 0.00 0.00 40.77 4.24
3522 3674 2.169832 TGTTAGAACCAGCACTGCTC 57.830 50.000 0.00 0.00 36.40 4.26
3523 3675 1.416030 TGTTAGAACCAGCACTGCTCA 59.584 47.619 0.00 0.00 36.40 4.26
3524 3676 2.038952 TGTTAGAACCAGCACTGCTCAT 59.961 45.455 0.00 0.00 36.40 2.90
3525 3677 2.675348 GTTAGAACCAGCACTGCTCATC 59.325 50.000 0.00 0.02 36.40 2.92
3557 3709 1.620822 TGTGCTGTAGTGAGCTGAGA 58.379 50.000 0.00 0.00 39.90 3.27
3558 3710 1.543358 TGTGCTGTAGTGAGCTGAGAG 59.457 52.381 0.00 0.00 39.90 3.20
3588 3740 5.490139 CATATCGTGCTCCACTCAAATTT 57.510 39.130 0.00 0.00 31.34 1.82
3592 3744 3.820467 TCGTGCTCCACTCAAATTTGATT 59.180 39.130 20.76 13.01 36.46 2.57
3597 3749 5.183713 TGCTCCACTCAAATTTGATTAGTGG 59.816 40.000 32.59 32.59 45.27 4.00
3602 3754 8.522830 TCCACTCAAATTTGATTAGTGGATTTC 58.477 33.333 34.73 0.00 46.38 2.17
3642 3799 2.785562 ACATAAAAGCACCGTAGCCAA 58.214 42.857 0.00 0.00 34.23 4.52
3705 3866 7.416664 GGCTTGTGATCCACATATGTTTATTGT 60.417 37.037 5.37 0.00 44.16 2.71
3706 3867 8.620416 GCTTGTGATCCACATATGTTTATTGTA 58.380 33.333 5.37 0.00 44.16 2.41
3709 3870 9.625747 TGTGATCCACATATGTTTATTGTATGT 57.374 29.630 5.37 0.00 39.62 2.29
3772 3933 2.890311 TCACTGGTATTTTTGGTGCTGG 59.110 45.455 0.00 0.00 0.00 4.85
3773 3934 2.029110 CACTGGTATTTTTGGTGCTGGG 60.029 50.000 0.00 0.00 0.00 4.45
3781 3942 6.016276 GGTATTTTTGGTGCTGGGTATCTATG 60.016 42.308 0.00 0.00 0.00 2.23
3782 3943 3.576078 TTTGGTGCTGGGTATCTATGG 57.424 47.619 0.00 0.00 0.00 2.74
3794 3956 1.739750 ATCTATGGGGGAGGCTTGAG 58.260 55.000 0.00 0.00 0.00 3.02
3795 3957 1.056700 TCTATGGGGGAGGCTTGAGC 61.057 60.000 0.00 0.00 41.14 4.26
3798 3960 3.650950 GGGGGAGGCTTGAGCACA 61.651 66.667 5.24 0.00 44.36 4.57
3799 3961 2.360475 GGGGAGGCTTGAGCACAC 60.360 66.667 5.24 0.00 44.36 3.82
3800 3962 2.360475 GGGAGGCTTGAGCACACC 60.360 66.667 5.24 4.83 44.36 4.16
3801 3963 2.431683 GGAGGCTTGAGCACACCA 59.568 61.111 5.24 0.00 44.36 4.17
3802 3964 1.228245 GGAGGCTTGAGCACACCAA 60.228 57.895 5.24 0.00 44.36 3.67
3803 3965 1.239968 GGAGGCTTGAGCACACCAAG 61.240 60.000 5.24 0.00 44.36 3.61
3852 4021 9.658475 TCTACATTTTCATTTTTGTCTGTTACG 57.342 29.630 0.00 0.00 0.00 3.18
3854 4023 5.858159 TTTTCATTTTTGTCTGTTACGCG 57.142 34.783 3.53 3.53 0.00 6.01
3878 4047 6.907212 CGTTGTCCTCATTTGTTAGATTATGC 59.093 38.462 0.00 0.00 0.00 3.14
3889 4058 1.512926 AGATTATGCCGATCGTTGCC 58.487 50.000 15.09 0.00 0.00 4.52
3900 4069 3.131326 TCGTTGCCGAAGTGTATGG 57.869 52.632 0.00 0.00 40.86 2.74
3901 4070 0.319083 TCGTTGCCGAAGTGTATGGT 59.681 50.000 0.00 0.00 40.86 3.55
3903 4072 1.657094 CGTTGCCGAAGTGTATGGTAC 59.343 52.381 0.00 0.00 35.63 3.34
3904 4073 2.004733 GTTGCCGAAGTGTATGGTACC 58.995 52.381 4.43 4.43 0.00 3.34
3918 4087 5.881443 TGTATGGTACCTTTGGTTTATTCCG 59.119 40.000 14.36 0.00 37.09 4.30
3920 4089 2.096335 GGTACCTTTGGTTTATTCCGCG 59.904 50.000 4.06 0.00 37.09 6.46
3923 4092 2.011222 CCTTTGGTTTATTCCGCGCTA 58.989 47.619 5.56 0.00 0.00 4.26
3933 4102 1.377594 TCCGCGCTAGTGTGGAGTA 60.378 57.895 30.20 12.48 43.39 2.59
3938 4107 1.064357 GCGCTAGTGTGGAGTAGACTC 59.936 57.143 0.00 0.75 42.14 3.36
3954 4123 8.567948 GGAGTAGACTCAAATTTTGTTTGATGA 58.432 33.333 11.64 0.00 44.60 2.92
3959 4128 9.252962 AGACTCAAATTTTGTTTGATGATGTTC 57.747 29.630 8.89 0.00 37.72 3.18
3960 4129 8.064447 ACTCAAATTTTGTTTGATGATGTTCG 57.936 30.769 8.89 0.00 37.72 3.95
3961 4130 7.920151 ACTCAAATTTTGTTTGATGATGTTCGA 59.080 29.630 8.89 0.00 37.72 3.71
3962 4131 8.640091 TCAAATTTTGTTTGATGATGTTCGAA 57.360 26.923 8.89 0.00 33.90 3.71
3963 4132 8.538856 TCAAATTTTGTTTGATGATGTTCGAAC 58.461 29.630 21.42 21.42 39.49 3.95
3964 4133 6.674005 ATTTTGTTTGATGATGTTCGAACG 57.326 33.333 22.48 0.00 41.17 3.95
3965 4134 3.804518 TGTTTGATGATGTTCGAACGG 57.195 42.857 22.48 0.00 41.17 4.44
3966 4135 2.482336 TGTTTGATGATGTTCGAACGGG 59.518 45.455 22.48 0.00 41.17 5.28
3967 4136 1.083489 TTGATGATGTTCGAACGGGC 58.917 50.000 22.48 14.41 0.00 6.13
3968 4137 0.742990 TGATGATGTTCGAACGGGCC 60.743 55.000 22.48 11.86 0.00 5.80
3969 4138 1.762222 GATGATGTTCGAACGGGCCG 61.762 60.000 27.06 27.06 0.00 6.13
3970 4139 3.861263 GATGTTCGAACGGGCCGC 61.861 66.667 28.71 10.04 0.00 6.53
3971 4140 4.388499 ATGTTCGAACGGGCCGCT 62.388 61.111 28.71 15.76 0.00 5.52
3972 4141 3.894547 ATGTTCGAACGGGCCGCTT 62.895 57.895 28.71 19.35 0.00 4.68
3973 4142 4.084888 GTTCGAACGGGCCGCTTG 62.085 66.667 28.71 19.06 0.00 4.01
3974 4143 4.612412 TTCGAACGGGCCGCTTGT 62.612 61.111 28.71 9.04 0.00 3.16
3975 4144 4.612412 TCGAACGGGCCGCTTGTT 62.612 61.111 28.71 13.27 0.00 2.83
3976 4145 3.656045 CGAACGGGCCGCTTGTTT 61.656 61.111 28.71 12.82 0.00 2.83
3977 4146 2.725641 GAACGGGCCGCTTGTTTT 59.274 55.556 28.71 11.95 0.00 2.43
3978 4147 1.843734 CGAACGGGCCGCTTGTTTTA 61.844 55.000 28.71 0.00 0.00 1.52
3979 4148 0.524414 GAACGGGCCGCTTGTTTTAT 59.476 50.000 28.71 0.00 0.00 1.40
3980 4149 1.738908 GAACGGGCCGCTTGTTTTATA 59.261 47.619 28.71 0.00 0.00 0.98
3981 4150 1.089112 ACGGGCCGCTTGTTTTATAC 58.911 50.000 28.71 0.00 0.00 1.47
3982 4151 1.339342 ACGGGCCGCTTGTTTTATACT 60.339 47.619 28.71 0.00 0.00 2.12
3983 4152 1.329599 CGGGCCGCTTGTTTTATACTC 59.670 52.381 15.42 0.00 0.00 2.59
3984 4153 1.674441 GGGCCGCTTGTTTTATACTCC 59.326 52.381 0.00 0.00 0.00 3.85
3985 4154 1.674441 GGCCGCTTGTTTTATACTCCC 59.326 52.381 0.00 0.00 0.00 4.30
3986 4155 2.640184 GCCGCTTGTTTTATACTCCCT 58.360 47.619 0.00 0.00 0.00 4.20
3987 4156 2.612672 GCCGCTTGTTTTATACTCCCTC 59.387 50.000 0.00 0.00 0.00 4.30
3988 4157 3.681874 GCCGCTTGTTTTATACTCCCTCT 60.682 47.826 0.00 0.00 0.00 3.69
3989 4158 3.871594 CCGCTTGTTTTATACTCCCTCTG 59.128 47.826 0.00 0.00 0.00 3.35
3990 4159 4.504858 CGCTTGTTTTATACTCCCTCTGT 58.495 43.478 0.00 0.00 0.00 3.41
3991 4160 5.394883 CCGCTTGTTTTATACTCCCTCTGTA 60.395 44.000 0.00 0.00 0.00 2.74
3992 4161 6.103997 CGCTTGTTTTATACTCCCTCTGTAA 58.896 40.000 0.00 0.00 0.00 2.41
3993 4162 6.592607 CGCTTGTTTTATACTCCCTCTGTAAA 59.407 38.462 0.00 0.00 0.00 2.01
3994 4163 7.412672 CGCTTGTTTTATACTCCCTCTGTAAAC 60.413 40.741 0.00 0.00 0.00 2.01
3995 4164 7.606839 GCTTGTTTTATACTCCCTCTGTAAACT 59.393 37.037 0.00 0.00 0.00 2.66
4006 4175 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.233190 TCAGAAAATTGTTTGCGTTTTCAATTT 58.767 25.926 11.07 13.33 45.83 1.82
4 5 7.301068 TCAGAAAATTGTTTGCGTTTTCAAT 57.699 28.000 11.07 1.58 41.77 2.57
5 6 6.712241 TCAGAAAATTGTTTGCGTTTTCAA 57.288 29.167 11.07 0.00 41.77 2.69
6 7 6.712241 TTCAGAAAATTGTTTGCGTTTTCA 57.288 29.167 11.07 0.00 41.77 2.69
7 8 7.233689 AGTTTCAGAAAATTGTTTGCGTTTTC 58.766 30.769 0.00 0.00 40.41 2.29
8 9 7.117667 AGAGTTTCAGAAAATTGTTTGCGTTTT 59.882 29.630 0.00 0.00 0.00 2.43
9 10 6.589907 AGAGTTTCAGAAAATTGTTTGCGTTT 59.410 30.769 0.00 0.00 0.00 3.60
10 11 6.034898 CAGAGTTTCAGAAAATTGTTTGCGTT 59.965 34.615 0.00 0.00 0.00 4.84
11 12 5.516339 CAGAGTTTCAGAAAATTGTTTGCGT 59.484 36.000 0.00 0.00 0.00 5.24
12 13 5.051508 CCAGAGTTTCAGAAAATTGTTTGCG 60.052 40.000 0.00 0.00 0.00 4.85
13 14 6.042143 TCCAGAGTTTCAGAAAATTGTTTGC 58.958 36.000 0.00 0.00 0.00 3.68
14 15 7.545265 TGTTCCAGAGTTTCAGAAAATTGTTTG 59.455 33.333 0.00 0.00 0.00 2.93
15 16 7.610865 TGTTCCAGAGTTTCAGAAAATTGTTT 58.389 30.769 0.00 0.00 0.00 2.83
16 17 7.169158 TGTTCCAGAGTTTCAGAAAATTGTT 57.831 32.000 0.00 0.00 0.00 2.83
17 18 6.773976 TGTTCCAGAGTTTCAGAAAATTGT 57.226 33.333 0.00 0.00 0.00 2.71
18 19 8.477984 TTTTGTTCCAGAGTTTCAGAAAATTG 57.522 30.769 0.00 0.00 0.00 2.32
19 20 9.671279 AATTTTGTTCCAGAGTTTCAGAAAATT 57.329 25.926 0.00 0.00 0.00 1.82
20 21 9.671279 AAATTTTGTTCCAGAGTTTCAGAAAAT 57.329 25.926 0.00 0.00 0.00 1.82
21 22 8.934825 CAAATTTTGTTCCAGAGTTTCAGAAAA 58.065 29.630 0.00 0.00 0.00 2.29
22 23 7.548780 CCAAATTTTGTTCCAGAGTTTCAGAAA 59.451 33.333 8.26 0.00 0.00 2.52
23 24 7.041107 CCAAATTTTGTTCCAGAGTTTCAGAA 58.959 34.615 8.26 0.00 0.00 3.02
24 25 6.379703 TCCAAATTTTGTTCCAGAGTTTCAGA 59.620 34.615 8.26 0.00 0.00 3.27
25 26 6.572519 TCCAAATTTTGTTCCAGAGTTTCAG 58.427 36.000 8.26 0.00 0.00 3.02
26 27 6.537453 TCCAAATTTTGTTCCAGAGTTTCA 57.463 33.333 8.26 0.00 0.00 2.69
27 28 7.333174 TGTTTCCAAATTTTGTTCCAGAGTTTC 59.667 33.333 8.26 0.00 0.00 2.78
28 29 7.119116 GTGTTTCCAAATTTTGTTCCAGAGTTT 59.881 33.333 8.26 0.00 0.00 2.66
29 30 6.593770 GTGTTTCCAAATTTTGTTCCAGAGTT 59.406 34.615 8.26 0.00 0.00 3.01
30 31 6.106003 GTGTTTCCAAATTTTGTTCCAGAGT 58.894 36.000 8.26 0.00 0.00 3.24
31 32 5.231991 CGTGTTTCCAAATTTTGTTCCAGAG 59.768 40.000 8.26 0.00 0.00 3.35
32 33 5.105716 TCGTGTTTCCAAATTTTGTTCCAGA 60.106 36.000 8.26 0.00 0.00 3.86
33 34 5.105752 TCGTGTTTCCAAATTTTGTTCCAG 58.894 37.500 8.26 0.00 0.00 3.86
34 35 5.073311 TCGTGTTTCCAAATTTTGTTCCA 57.927 34.783 8.26 0.00 0.00 3.53
35 36 5.348997 TGTTCGTGTTTCCAAATTTTGTTCC 59.651 36.000 8.26 0.00 0.00 3.62
36 37 6.396459 TGTTCGTGTTTCCAAATTTTGTTC 57.604 33.333 8.26 0.00 0.00 3.18
37 38 6.787085 TTGTTCGTGTTTCCAAATTTTGTT 57.213 29.167 8.26 0.00 0.00 2.83
38 39 6.787085 TTTGTTCGTGTTTCCAAATTTTGT 57.213 29.167 8.26 0.00 0.00 2.83
39 40 8.666580 AAATTTGTTCGTGTTTCCAAATTTTG 57.333 26.923 13.30 1.99 46.91 2.44
42 43 8.507249 TCAAAAATTTGTTCGTGTTTCCAAATT 58.493 25.926 5.84 0.00 44.83 1.82
43 44 8.034058 TCAAAAATTTGTTCGTGTTTCCAAAT 57.966 26.923 5.84 0.00 38.72 2.32
44 45 7.421530 TCAAAAATTTGTTCGTGTTTCCAAA 57.578 28.000 5.84 0.00 39.18 3.28
45 46 7.421530 TTCAAAAATTTGTTCGTGTTTCCAA 57.578 28.000 5.84 0.00 39.18 3.53
46 47 7.421530 TTTCAAAAATTTGTTCGTGTTTCCA 57.578 28.000 5.84 0.00 39.18 3.53
47 48 8.888332 ATTTTCAAAAATTTGTTCGTGTTTCC 57.112 26.923 5.84 0.00 39.18 3.13
48 49 8.711727 CGATTTTCAAAAATTTGTTCGTGTTTC 58.288 29.630 5.84 0.00 38.64 2.78
49 50 8.436200 TCGATTTTCAAAAATTTGTTCGTGTTT 58.564 25.926 5.84 0.00 38.64 2.83
50 51 7.954447 TCGATTTTCAAAAATTTGTTCGTGTT 58.046 26.923 5.84 0.00 38.64 3.32
51 52 7.513190 TCGATTTTCAAAAATTTGTTCGTGT 57.487 28.000 5.84 0.00 38.64 4.49
52 53 7.895259 TGTTCGATTTTCAAAAATTTGTTCGTG 59.105 29.630 5.84 0.00 38.64 4.35
53 54 7.954447 TGTTCGATTTTCAAAAATTTGTTCGT 58.046 26.923 5.84 0.00 38.64 3.85
54 55 8.970529 ATGTTCGATTTTCAAAAATTTGTTCG 57.029 26.923 5.84 9.93 38.64 3.95
184 185 9.757227 TCTTTTTCTTTTTCTGTTTCTGTTTCA 57.243 25.926 0.00 0.00 0.00 2.69
263 264 1.835267 GGGTTCCCAGCCGGTTTTT 60.835 57.895 1.90 0.00 0.00 1.94
264 265 2.203582 GGGTTCCCAGCCGGTTTT 60.204 61.111 1.90 0.00 0.00 2.43
265 266 3.182996 AGGGTTCCCAGCCGGTTT 61.183 61.111 10.73 0.00 46.26 3.27
266 267 3.647771 GAGGGTTCCCAGCCGGTT 61.648 66.667 10.73 0.00 46.26 4.44
267 268 4.974438 TGAGGGTTCCCAGCCGGT 62.974 66.667 10.73 0.00 46.26 5.28
268 269 4.101448 CTGAGGGTTCCCAGCCGG 62.101 72.222 10.73 0.00 46.26 6.13
269 270 2.124507 TTTCTGAGGGTTCCCAGCCG 62.125 60.000 10.73 0.00 46.26 5.52
270 271 0.322906 CTTTCTGAGGGTTCCCAGCC 60.323 60.000 10.73 0.00 41.43 4.85
271 272 0.402121 ACTTTCTGAGGGTTCCCAGC 59.598 55.000 10.73 2.53 0.00 4.85
272 273 2.784347 GAACTTTCTGAGGGTTCCCAG 58.216 52.381 10.73 0.00 34.90 4.45
273 274 2.951229 GAACTTTCTGAGGGTTCCCA 57.049 50.000 10.73 0.00 34.90 4.37
276 277 2.951229 TGGGAACTTTCTGAGGGTTC 57.049 50.000 12.98 12.98 38.71 3.62
277 278 3.680777 TTTGGGAACTTTCTGAGGGTT 57.319 42.857 0.00 0.00 0.00 4.11
278 279 3.296854 GTTTTGGGAACTTTCTGAGGGT 58.703 45.455 0.00 0.00 0.00 4.34
279 280 2.628178 GGTTTTGGGAACTTTCTGAGGG 59.372 50.000 0.00 0.00 0.00 4.30
280 281 2.293399 CGGTTTTGGGAACTTTCTGAGG 59.707 50.000 0.00 0.00 0.00 3.86
281 282 2.293399 CCGGTTTTGGGAACTTTCTGAG 59.707 50.000 0.00 0.00 0.00 3.35
282 283 2.303175 CCGGTTTTGGGAACTTTCTGA 58.697 47.619 0.00 0.00 0.00 3.27
283 284 2.793278 CCGGTTTTGGGAACTTTCTG 57.207 50.000 0.00 0.00 0.00 3.02
293 294 1.811645 ATTTCACGCCCCGGTTTTGG 61.812 55.000 0.00 0.00 0.00 3.28
294 295 0.882474 TATTTCACGCCCCGGTTTTG 59.118 50.000 0.00 0.00 0.00 2.44
295 296 1.842052 ATATTTCACGCCCCGGTTTT 58.158 45.000 0.00 0.00 0.00 2.43
296 297 1.842052 AATATTTCACGCCCCGGTTT 58.158 45.000 0.00 0.00 0.00 3.27
297 298 1.842052 AAATATTTCACGCCCCGGTT 58.158 45.000 0.00 0.00 0.00 4.44
298 299 2.291365 GTAAATATTTCACGCCCCGGT 58.709 47.619 3.39 0.00 0.00 5.28
299 300 1.262151 CGTAAATATTTCACGCCCCGG 59.738 52.381 3.39 0.00 0.00 5.73
300 301 1.935199 ACGTAAATATTTCACGCCCCG 59.065 47.619 20.36 10.27 39.23 5.73
301 302 2.937799 TCACGTAAATATTTCACGCCCC 59.062 45.455 20.36 0.14 39.23 5.80
302 303 4.523813 CATCACGTAAATATTTCACGCCC 58.476 43.478 20.36 1.41 39.23 6.13
303 304 4.523813 CCATCACGTAAATATTTCACGCC 58.476 43.478 20.36 2.69 39.23 5.68
304 305 4.523813 CCCATCACGTAAATATTTCACGC 58.476 43.478 20.36 6.20 39.23 5.34
305 306 4.523813 GCCCATCACGTAAATATTTCACG 58.476 43.478 19.51 19.51 41.32 4.35
306 307 4.553938 CGGCCCATCACGTAAATATTTCAC 60.554 45.833 3.39 1.49 0.00 3.18
307 308 3.562141 CGGCCCATCACGTAAATATTTCA 59.438 43.478 3.39 0.00 0.00 2.69
308 309 3.058501 CCGGCCCATCACGTAAATATTTC 60.059 47.826 3.39 0.00 0.00 2.17
309 310 2.882137 CCGGCCCATCACGTAAATATTT 59.118 45.455 5.89 5.89 0.00 1.40
310 311 2.500229 CCGGCCCATCACGTAAATATT 58.500 47.619 0.00 0.00 0.00 1.28
311 312 1.880646 GCCGGCCCATCACGTAAATAT 60.881 52.381 18.11 0.00 0.00 1.28
312 313 0.533308 GCCGGCCCATCACGTAAATA 60.533 55.000 18.11 0.00 0.00 1.40
313 314 1.822186 GCCGGCCCATCACGTAAAT 60.822 57.895 18.11 0.00 0.00 1.40
314 315 2.437002 GCCGGCCCATCACGTAAA 60.437 61.111 18.11 0.00 0.00 2.01
315 316 4.823419 CGCCGGCCCATCACGTAA 62.823 66.667 23.46 0.00 0.00 3.18
321 322 4.270376 GATTTGCGCCGGCCCATC 62.270 66.667 23.46 10.11 38.85 3.51
332 333 3.929948 CCCGAGCGAGCGATTTGC 61.930 66.667 0.00 0.00 46.98 3.68
333 334 2.509336 ACCCGAGCGAGCGATTTG 60.509 61.111 0.00 0.00 0.00 2.32
334 335 2.202756 GACCCGAGCGAGCGATTT 60.203 61.111 0.00 0.00 0.00 2.17
335 336 4.554363 CGACCCGAGCGAGCGATT 62.554 66.667 0.00 0.00 0.00 3.34
342 343 4.883300 GTACGAGCGACCCGAGCG 62.883 72.222 0.00 0.00 40.04 5.03
343 344 4.883300 CGTACGAGCGACCCGAGC 62.883 72.222 10.44 0.00 0.00 5.03
344 345 4.233635 CCGTACGAGCGACCCGAG 62.234 72.222 18.76 0.00 0.00 4.63
352 353 4.143363 GCAAACGCCCGTACGAGC 62.143 66.667 18.76 15.37 36.70 5.03
353 354 2.431942 AGCAAACGCCCGTACGAG 60.432 61.111 18.76 4.06 36.70 4.18
354 355 2.431260 GAGCAAACGCCCGTACGA 60.431 61.111 18.76 0.00 36.70 3.43
355 356 3.834373 CGAGCAAACGCCCGTACG 61.834 66.667 8.69 8.69 39.50 3.67
356 357 2.431260 TCGAGCAAACGCCCGTAC 60.431 61.111 0.00 0.00 0.00 3.67
357 358 2.431260 GTCGAGCAAACGCCCGTA 60.431 61.111 0.00 0.00 0.00 4.02
358 359 4.595538 TGTCGAGCAAACGCCCGT 62.596 61.111 0.00 0.00 0.00 5.28
359 360 3.777925 CTGTCGAGCAAACGCCCG 61.778 66.667 0.00 0.00 0.00 6.13
360 361 1.782028 AAACTGTCGAGCAAACGCCC 61.782 55.000 0.00 0.00 0.00 6.13
361 362 0.657368 CAAACTGTCGAGCAAACGCC 60.657 55.000 0.00 0.00 0.00 5.68
362 363 0.303493 TCAAACTGTCGAGCAAACGC 59.697 50.000 0.00 0.00 0.00 4.84
363 364 1.653679 CGTCAAACTGTCGAGCAAACG 60.654 52.381 0.00 0.00 30.84 3.60
364 365 1.915965 GCGTCAAACTGTCGAGCAAAC 60.916 52.381 0.00 0.00 30.84 2.93
365 366 0.303493 GCGTCAAACTGTCGAGCAAA 59.697 50.000 0.00 0.00 30.84 3.68
366 367 0.808060 TGCGTCAAACTGTCGAGCAA 60.808 50.000 0.00 0.00 30.84 3.91
367 368 1.215014 CTGCGTCAAACTGTCGAGCA 61.215 55.000 0.00 0.00 30.84 4.26
368 369 0.939577 TCTGCGTCAAACTGTCGAGC 60.940 55.000 0.00 0.00 30.84 5.03
369 370 1.056103 CTCTGCGTCAAACTGTCGAG 58.944 55.000 0.00 0.00 30.84 4.04
370 371 0.384309 ACTCTGCGTCAAACTGTCGA 59.616 50.000 0.00 0.00 30.84 4.20
371 372 0.778815 GACTCTGCGTCAAACTGTCG 59.221 55.000 0.00 0.00 42.37 4.35
380 381 1.664588 GCCTCGATATGACTCTGCGTC 60.665 57.143 0.00 0.00 43.14 5.19
381 382 0.312416 GCCTCGATATGACTCTGCGT 59.688 55.000 0.00 0.00 0.00 5.24
382 383 0.387878 GGCCTCGATATGACTCTGCG 60.388 60.000 0.00 0.00 0.00 5.18
383 384 0.387878 CGGCCTCGATATGACTCTGC 60.388 60.000 0.00 0.00 39.00 4.26
384 385 0.242286 CCGGCCTCGATATGACTCTG 59.758 60.000 0.00 0.00 39.00 3.35
385 386 1.528292 GCCGGCCTCGATATGACTCT 61.528 60.000 18.11 0.00 39.00 3.24
386 387 1.080434 GCCGGCCTCGATATGACTC 60.080 63.158 18.11 0.00 39.00 3.36
387 388 0.251209 TAGCCGGCCTCGATATGACT 60.251 55.000 26.15 1.43 39.00 3.41
388 389 0.109226 GTAGCCGGCCTCGATATGAC 60.109 60.000 26.15 3.56 39.00 3.06
389 390 0.251209 AGTAGCCGGCCTCGATATGA 60.251 55.000 26.15 0.00 39.00 2.15
390 391 1.132643 GTAGTAGCCGGCCTCGATATG 59.867 57.143 26.15 0.00 39.00 1.78
391 392 1.461559 GTAGTAGCCGGCCTCGATAT 58.538 55.000 26.15 4.77 39.00 1.63
392 393 0.607489 GGTAGTAGCCGGCCTCGATA 60.607 60.000 26.15 5.33 39.00 2.92
393 394 1.902432 GGTAGTAGCCGGCCTCGAT 60.902 63.158 26.15 6.59 39.00 3.59
394 395 2.517875 GGTAGTAGCCGGCCTCGA 60.518 66.667 26.15 10.18 39.00 4.04
403 404 1.066587 CTCAGCAGGCGGTAGTAGC 59.933 63.158 0.00 0.00 0.00 3.58
404 405 1.736586 CCTCAGCAGGCGGTAGTAG 59.263 63.158 0.00 0.00 30.98 2.57
405 406 3.935024 CCTCAGCAGGCGGTAGTA 58.065 61.111 0.00 0.00 30.98 1.82
422 423 0.965439 ATCAGACATAGAGGCCTCGC 59.035 55.000 26.95 14.57 34.09 5.03
423 424 1.336702 GCATCAGACATAGAGGCCTCG 60.337 57.143 26.95 15.50 36.86 4.63
424 425 1.336702 CGCATCAGACATAGAGGCCTC 60.337 57.143 26.22 26.22 39.44 4.70
425 426 0.678395 CGCATCAGACATAGAGGCCT 59.322 55.000 3.86 3.86 39.44 5.19
426 427 0.948141 GCGCATCAGACATAGAGGCC 60.948 60.000 0.30 0.00 39.44 5.19
427 428 0.033228 AGCGCATCAGACATAGAGGC 59.967 55.000 11.47 0.00 39.24 4.70
428 429 1.604947 CCAGCGCATCAGACATAGAGG 60.605 57.143 11.47 0.00 0.00 3.69
429 430 1.068281 ACCAGCGCATCAGACATAGAG 59.932 52.381 11.47 0.00 0.00 2.43
430 431 1.114627 ACCAGCGCATCAGACATAGA 58.885 50.000 11.47 0.00 0.00 1.98
431 432 1.202452 TCACCAGCGCATCAGACATAG 60.202 52.381 11.47 0.00 0.00 2.23
432 433 0.823460 TCACCAGCGCATCAGACATA 59.177 50.000 11.47 0.00 0.00 2.29
433 434 0.742281 GTCACCAGCGCATCAGACAT 60.742 55.000 11.47 0.00 0.00 3.06
434 435 1.374631 GTCACCAGCGCATCAGACA 60.375 57.895 11.47 0.00 0.00 3.41
435 436 1.374631 TGTCACCAGCGCATCAGAC 60.375 57.895 11.47 12.94 0.00 3.51
436 437 1.374631 GTGTCACCAGCGCATCAGA 60.375 57.895 11.47 0.00 0.00 3.27
437 438 2.733671 CGTGTCACCAGCGCATCAG 61.734 63.158 11.47 0.00 0.00 2.90
438 439 2.738139 CGTGTCACCAGCGCATCA 60.738 61.111 11.47 0.00 0.00 3.07
450 451 3.993376 TATTGGGCCGACGCGTGTC 62.993 63.158 20.70 19.11 41.91 3.67
451 452 4.071875 TATTGGGCCGACGCGTGT 62.072 61.111 20.70 0.00 35.02 4.49
452 453 3.560278 GTATTGGGCCGACGCGTG 61.560 66.667 20.70 9.33 35.02 5.34
453 454 3.592856 TTGTATTGGGCCGACGCGT 62.593 57.895 13.85 13.85 35.02 6.01
454 455 2.392181 TTTGTATTGGGCCGACGCG 61.392 57.895 3.53 3.53 35.02 6.01
455 456 1.135939 GTTTGTATTGGGCCGACGC 59.864 57.895 0.00 0.00 0.00 5.19
456 457 1.650314 GGGTTTGTATTGGGCCGACG 61.650 60.000 0.00 0.00 0.00 5.12
457 458 0.323087 AGGGTTTGTATTGGGCCGAC 60.323 55.000 0.00 0.00 0.00 4.79
499 504 2.383527 GGGAGCAGCTCGTTCGTTG 61.384 63.158 16.47 0.00 0.00 4.10
527 546 4.477975 GTCGAGTCCAGGCGTCGG 62.478 72.222 9.69 0.00 34.43 4.79
556 575 4.354387 TCAAAATAGGGTTTGTACTGGGGA 59.646 41.667 0.00 0.00 39.16 4.81
562 581 4.765339 AGCCACTCAAAATAGGGTTTGTAC 59.235 41.667 0.00 0.00 39.16 2.90
563 582 4.764823 CAGCCACTCAAAATAGGGTTTGTA 59.235 41.667 0.00 0.00 39.16 2.41
564 583 3.573967 CAGCCACTCAAAATAGGGTTTGT 59.426 43.478 0.00 0.00 39.16 2.83
565 584 3.056607 CCAGCCACTCAAAATAGGGTTTG 60.057 47.826 0.00 0.00 39.41 2.93
566 585 3.165071 CCAGCCACTCAAAATAGGGTTT 58.835 45.455 0.00 0.00 0.00 3.27
568 587 1.616994 GCCAGCCACTCAAAATAGGGT 60.617 52.381 0.00 0.00 0.00 4.34
570 589 1.747355 CAGCCAGCCACTCAAAATAGG 59.253 52.381 0.00 0.00 0.00 2.57
571 590 1.133790 GCAGCCAGCCACTCAAAATAG 59.866 52.381 0.00 0.00 37.23 1.73
572 591 1.176527 GCAGCCAGCCACTCAAAATA 58.823 50.000 0.00 0.00 37.23 1.40
573 592 1.969862 GCAGCCAGCCACTCAAAAT 59.030 52.632 0.00 0.00 37.23 1.82
584 603 3.441290 GCAAGGAGCAGCAGCCAG 61.441 66.667 0.00 0.91 44.79 4.85
593 612 1.077429 CAAGGGGGTAGCAAGGAGC 60.077 63.158 0.00 0.00 46.19 4.70
594 613 1.077429 GCAAGGGGGTAGCAAGGAG 60.077 63.158 0.00 0.00 0.00 3.69
595 614 1.541368 AGCAAGGGGGTAGCAAGGA 60.541 57.895 0.00 0.00 0.00 3.36
598 617 1.074775 CACAGCAAGGGGGTAGCAA 59.925 57.895 0.00 0.00 0.00 3.91
599 618 2.756400 CACAGCAAGGGGGTAGCA 59.244 61.111 0.00 0.00 0.00 3.49
600 619 2.751837 GCACAGCAAGGGGGTAGC 60.752 66.667 0.00 0.00 0.00 3.58
602 621 1.074775 CAAGCACAGCAAGGGGGTA 59.925 57.895 0.00 0.00 0.00 3.69
603 622 2.203538 CAAGCACAGCAAGGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
637 696 3.398920 CCGATACGGCAGCACAAG 58.601 61.111 0.00 0.00 41.17 3.16
663 722 9.793259 CAGAAAGGAAAAGCATATATACCCTAA 57.207 33.333 0.00 0.00 0.00 2.69
664 723 8.383175 CCAGAAAGGAAAAGCATATATACCCTA 58.617 37.037 0.00 0.00 41.22 3.53
665 724 7.147123 ACCAGAAAGGAAAAGCATATATACCCT 60.147 37.037 0.00 0.00 41.22 4.34
666 725 7.004691 ACCAGAAAGGAAAAGCATATATACCC 58.995 38.462 0.00 0.00 41.22 3.69
667 726 8.352942 CAACCAGAAAGGAAAAGCATATATACC 58.647 37.037 0.00 0.00 41.22 2.73
668 727 8.903820 ACAACCAGAAAGGAAAAGCATATATAC 58.096 33.333 0.00 0.00 41.22 1.47
700 759 8.752766 AGTTGAAGCACAAATCTAATCATTTG 57.247 30.769 4.70 4.70 45.59 2.32
703 762 9.182214 ACATAGTTGAAGCACAAATCTAATCAT 57.818 29.630 0.42 0.00 40.36 2.45
710 769 7.094805 TGGTTAGACATAGTTGAAGCACAAATC 60.095 37.037 0.42 0.00 40.36 2.17
730 789 5.278957 CCCCAGTTTCTTTGTTGATGGTTAG 60.279 44.000 0.00 0.00 0.00 2.34
782 843 6.687081 ACACACGAGGAAAACTTTGATTTA 57.313 33.333 0.00 0.00 0.00 1.40
799 860 4.055360 TCAGTGAATCCTTGTTACACACG 58.945 43.478 0.00 0.00 34.47 4.49
830 891 4.398988 ACATAGCAATCATTTCCGAAAGCA 59.601 37.500 0.00 0.00 0.00 3.91
833 894 6.757897 AGAACATAGCAATCATTTCCGAAA 57.242 33.333 0.00 0.00 0.00 3.46
835 896 6.456853 CGAAAGAACATAGCAATCATTTCCGA 60.457 38.462 0.00 0.00 0.00 4.55
836 897 5.678483 CGAAAGAACATAGCAATCATTTCCG 59.322 40.000 0.00 0.00 0.00 4.30
837 898 5.973565 CCGAAAGAACATAGCAATCATTTCC 59.026 40.000 0.00 0.00 0.00 3.13
839 900 6.757897 TCCGAAAGAACATAGCAATCATTT 57.242 33.333 0.00 0.00 0.00 2.32
859 971 1.001487 TGCAAGACAGCACAATTTCCG 60.001 47.619 0.00 0.00 40.11 4.30
936 1049 5.221880 ACAAACAAATGTCATGTCAATCCG 58.778 37.500 0.00 0.00 0.00 4.18
997 1113 9.638239 TTTCTTGAAATTATACTGCACCATTTC 57.362 29.630 0.00 0.00 35.35 2.17
1042 1158 7.205515 AGATTATGTCAATGAAGTCCTTCCT 57.794 36.000 4.67 0.00 38.77 3.36
1158 1274 3.560902 TCGTAGAAGTTCTGCTGAGTG 57.439 47.619 15.90 1.37 0.00 3.51
1176 1292 1.522668 TGATGGTGGACAGCTTTTCG 58.477 50.000 3.02 0.00 36.18 3.46
1269 1386 1.613437 CCCAAGGCAAGTTTGTAGTGG 59.387 52.381 0.00 0.00 0.00 4.00
1386 1507 1.160137 GACCTAGTGCAGCAACCTTG 58.840 55.000 0.00 0.00 0.00 3.61
1422 1543 2.301577 AACTAGGACTGATGCGCTTC 57.698 50.000 15.88 15.88 0.00 3.86
1668 1792 1.709994 AAGGCCGATCAAGGATCCCC 61.710 60.000 8.55 0.00 35.83 4.81
2455 2579 1.453155 AACTCGTCATGGCCATCAAC 58.547 50.000 17.61 16.06 0.00 3.18
2643 2767 1.070134 GCAGTAGGATCAACGCCCATA 59.930 52.381 0.00 0.00 0.00 2.74
2838 2965 1.131638 TTTGAGCAGTGTCCCTGAGT 58.868 50.000 0.00 0.00 44.49 3.41
2928 3055 4.077184 GTGGGGATGACGCGGTCA 62.077 66.667 12.47 12.51 46.90 4.02
3012 3139 1.471119 AGCAGCAATGTCCAGATTGG 58.529 50.000 0.00 0.00 39.43 3.16
3176 3310 6.939730 TGGTTCTAACATTTGCATCTAGTTCA 59.060 34.615 0.00 0.00 0.00 3.18
3177 3311 7.377766 TGGTTCTAACATTTGCATCTAGTTC 57.622 36.000 0.00 0.00 0.00 3.01
3248 3386 6.207614 TGAGAGTGCAGTATGATATGTAGACC 59.792 42.308 0.00 0.00 39.69 3.85
3251 3389 9.486497 AATTTGAGAGTGCAGTATGATATGTAG 57.514 33.333 0.00 0.00 39.69 2.74
3314 3460 3.758023 CCAATGACCAGTTTGTGATAGCA 59.242 43.478 0.00 0.00 0.00 3.49
3337 3483 2.819115 AGATCTACAGTGCTTGCATCG 58.181 47.619 0.00 0.00 0.00 3.84
3359 3506 6.055588 GCAATACTTCACAAGCCCTTCTATA 58.944 40.000 0.00 0.00 0.00 1.31
3422 3569 6.436843 AAATTGAAGGGTTAAGCTGATACG 57.563 37.500 4.41 0.00 0.00 3.06
3449 3596 7.715266 TTTTGATCAACAACATCCATATGGA 57.285 32.000 26.49 26.49 42.60 3.41
3476 3628 7.908827 TGCATTCAATTTACAAAATCAGCAT 57.091 28.000 0.00 0.00 0.00 3.79
3501 3653 3.077359 GAGCAGTGCTGGTTCTAACATT 58.923 45.455 25.35 0.00 39.88 2.71
3502 3654 2.038952 TGAGCAGTGCTGGTTCTAACAT 59.961 45.455 25.35 0.00 39.88 2.71
3503 3655 1.416030 TGAGCAGTGCTGGTTCTAACA 59.584 47.619 25.35 8.69 39.88 2.41
3505 3657 2.568956 AGATGAGCAGTGCTGGTTCTAA 59.431 45.455 25.35 0.00 39.88 2.10
3506 3658 2.182827 AGATGAGCAGTGCTGGTTCTA 58.817 47.619 25.35 1.77 39.88 2.10
3507 3659 0.982704 AGATGAGCAGTGCTGGTTCT 59.017 50.000 25.35 17.62 39.88 3.01
3508 3660 2.093764 ACTAGATGAGCAGTGCTGGTTC 60.094 50.000 25.35 15.61 39.88 3.62
3509 3661 1.905215 ACTAGATGAGCAGTGCTGGTT 59.095 47.619 25.35 6.55 39.88 3.67
3513 3665 4.190001 CAATTGACTAGATGAGCAGTGCT 58.810 43.478 19.86 19.86 43.88 4.40
3514 3666 3.311871 CCAATTGACTAGATGAGCAGTGC 59.688 47.826 7.13 7.13 0.00 4.40
3515 3667 4.511527 ACCAATTGACTAGATGAGCAGTG 58.488 43.478 7.12 0.00 0.00 3.66
3516 3668 4.833478 ACCAATTGACTAGATGAGCAGT 57.167 40.909 7.12 0.00 0.00 4.40
3517 3669 4.940046 ACAACCAATTGACTAGATGAGCAG 59.060 41.667 7.12 0.00 39.30 4.24
3518 3670 4.696877 CACAACCAATTGACTAGATGAGCA 59.303 41.667 7.12 0.00 39.30 4.26
3519 3671 4.437930 GCACAACCAATTGACTAGATGAGC 60.438 45.833 7.12 2.04 39.30 4.26
3520 3672 4.940046 AGCACAACCAATTGACTAGATGAG 59.060 41.667 7.12 0.00 39.30 2.90
3521 3673 4.696877 CAGCACAACCAATTGACTAGATGA 59.303 41.667 7.12 0.00 39.30 2.92
3522 3674 4.456911 ACAGCACAACCAATTGACTAGATG 59.543 41.667 7.12 4.49 39.30 2.90
3523 3675 4.655963 ACAGCACAACCAATTGACTAGAT 58.344 39.130 7.12 0.00 39.30 1.98
3524 3676 4.085357 ACAGCACAACCAATTGACTAGA 57.915 40.909 7.12 0.00 39.30 2.43
3525 3677 4.997395 ACTACAGCACAACCAATTGACTAG 59.003 41.667 7.12 0.00 39.30 2.57
3577 3729 8.526147 AGAAATCCACTAATCAAATTTGAGTGG 58.474 33.333 32.59 32.59 45.27 4.00
3621 3773 3.613494 TGGCTACGGTGCTTTTATGTA 57.387 42.857 0.00 0.00 0.00 2.29
3622 3774 2.483014 TGGCTACGGTGCTTTTATGT 57.517 45.000 0.00 0.00 0.00 2.29
3623 3775 3.840890 TTTGGCTACGGTGCTTTTATG 57.159 42.857 0.00 0.00 0.00 1.90
3625 3777 3.633065 AGTTTTTGGCTACGGTGCTTTTA 59.367 39.130 0.00 0.00 0.00 1.52
3626 3778 2.429250 AGTTTTTGGCTACGGTGCTTTT 59.571 40.909 0.00 0.00 0.00 2.27
3642 3799 1.067635 GCATCACCAATCGCCAGTTTT 60.068 47.619 0.00 0.00 0.00 2.43
3649 3806 0.799534 GTGCTTGCATCACCAATCGC 60.800 55.000 8.05 0.00 0.00 4.58
3672 3833 0.776810 TGGATCACAAGCCCTTCCAA 59.223 50.000 0.00 0.00 33.66 3.53
3705 3866 7.332926 GAGAATCAAGAGTTGAGCTTCAACATA 59.667 37.037 22.54 9.65 46.66 2.29
3706 3867 6.149142 GAGAATCAAGAGTTGAGCTTCAACAT 59.851 38.462 22.54 12.87 46.66 2.71
3707 3868 5.468072 GAGAATCAAGAGTTGAGCTTCAACA 59.532 40.000 22.54 8.98 46.66 3.33
3708 3869 5.925907 GAGAATCAAGAGTTGAGCTTCAAC 58.074 41.667 16.54 16.54 45.57 3.18
3709 3870 5.862845 AGAGAATCAAGAGTTGAGCTTCAA 58.137 37.500 0.00 0.00 43.98 2.69
3710 3871 5.477510 GAGAGAATCAAGAGTTGAGCTTCA 58.522 41.667 0.00 0.00 43.98 3.02
3722 3883 3.055240 ACTTCCTGCAGGAGAGAATCAAG 60.055 47.826 33.32 27.56 46.36 3.02
3725 3886 3.449018 TGTACTTCCTGCAGGAGAGAATC 59.551 47.826 33.32 25.04 46.36 2.52
3726 3887 3.445008 TGTACTTCCTGCAGGAGAGAAT 58.555 45.455 33.32 22.81 46.36 2.40
3727 3888 2.828520 CTGTACTTCCTGCAGGAGAGAA 59.171 50.000 33.32 22.35 46.36 2.87
3728 3889 2.451490 CTGTACTTCCTGCAGGAGAGA 58.549 52.381 33.32 22.64 46.36 3.10
3757 3918 6.016276 CCATAGATACCCAGCACCAAAAATAC 60.016 42.308 0.00 0.00 0.00 1.89
3772 3933 1.630878 CAAGCCTCCCCCATAGATACC 59.369 57.143 0.00 0.00 0.00 2.73
3773 3934 2.569404 CTCAAGCCTCCCCCATAGATAC 59.431 54.545 0.00 0.00 0.00 2.24
3781 3942 3.650950 TGTGCTCAAGCCTCCCCC 61.651 66.667 0.00 0.00 41.18 5.40
3782 3943 2.360475 GTGTGCTCAAGCCTCCCC 60.360 66.667 0.00 0.00 41.18 4.81
3794 3956 3.677648 CCTGCCAGCTTGGTGTGC 61.678 66.667 4.45 3.37 40.46 4.57
3795 3957 1.970114 CTCCTGCCAGCTTGGTGTG 60.970 63.158 4.45 0.00 40.46 3.82
3798 3960 0.543749 GTATCTCCTGCCAGCTTGGT 59.456 55.000 4.45 0.00 40.46 3.67
3799 3961 0.835941 AGTATCTCCTGCCAGCTTGG 59.164 55.000 0.00 0.00 41.55 3.61
3800 3962 2.697751 AGTAGTATCTCCTGCCAGCTTG 59.302 50.000 0.00 0.00 0.00 4.01
3801 3963 3.039252 AGTAGTATCTCCTGCCAGCTT 57.961 47.619 0.00 0.00 0.00 3.74
3802 3964 2.765689 AGTAGTATCTCCTGCCAGCT 57.234 50.000 0.00 0.00 0.00 4.24
3803 3965 3.492337 ACTAGTAGTATCTCCTGCCAGC 58.508 50.000 0.00 0.00 0.00 4.85
3844 4013 0.669619 TGAGGACAACGCGTAACAGA 59.330 50.000 14.46 0.00 0.00 3.41
3852 4021 4.946784 ATCTAACAAATGAGGACAACGC 57.053 40.909 0.00 0.00 0.00 4.84
3854 4023 7.196331 GGCATAATCTAACAAATGAGGACAAC 58.804 38.462 0.00 0.00 0.00 3.32
3889 4058 3.934068 ACCAAAGGTACCATACACTTCG 58.066 45.455 15.94 0.00 32.11 3.79
3898 4067 3.083293 GCGGAATAAACCAAAGGTACCA 58.917 45.455 15.94 0.00 33.12 3.25
3900 4069 2.476686 GCGCGGAATAAACCAAAGGTAC 60.477 50.000 8.83 0.00 33.12 3.34
3901 4070 1.738908 GCGCGGAATAAACCAAAGGTA 59.261 47.619 8.83 0.00 33.12 3.08
3903 4072 0.808755 AGCGCGGAATAAACCAAAGG 59.191 50.000 8.83 0.00 0.00 3.11
3904 4073 2.676342 ACTAGCGCGGAATAAACCAAAG 59.324 45.455 8.83 0.00 0.00 2.77
3918 4087 1.064357 GAGTCTACTCCACACTAGCGC 59.936 57.143 0.00 0.00 37.02 5.92
3920 4089 4.785511 TTTGAGTCTACTCCACACTAGC 57.214 45.455 7.63 0.00 42.20 3.42
3923 4092 6.357367 ACAAAATTTGAGTCTACTCCACACT 58.643 36.000 13.19 0.00 42.20 3.55
3933 4102 9.252962 GAACATCATCAAACAAAATTTGAGTCT 57.747 29.630 13.19 0.00 41.13 3.24
3938 4107 7.523542 CGTTCGAACATCATCAAACAAAATTTG 59.476 33.333 26.71 3.89 0.00 2.32
3954 4123 3.894547 AAGCGGCCCGTTCGAACAT 62.895 57.895 26.71 1.83 0.00 2.71
3958 4127 4.612412 AACAAGCGGCCCGTTCGA 62.612 61.111 4.45 0.00 0.00 3.71
3959 4128 1.843734 TAAAACAAGCGGCCCGTTCG 61.844 55.000 4.45 0.00 0.00 3.95
3960 4129 0.524414 ATAAAACAAGCGGCCCGTTC 59.476 50.000 4.45 0.00 0.00 3.95
3961 4130 1.469703 GTATAAAACAAGCGGCCCGTT 59.530 47.619 4.45 0.00 0.00 4.44
3962 4131 1.089112 GTATAAAACAAGCGGCCCGT 58.911 50.000 4.45 0.00 0.00 5.28
3963 4132 1.329599 GAGTATAAAACAAGCGGCCCG 59.670 52.381 0.00 0.00 0.00 6.13
3964 4133 1.674441 GGAGTATAAAACAAGCGGCCC 59.326 52.381 0.00 0.00 0.00 5.80
3965 4134 1.674441 GGGAGTATAAAACAAGCGGCC 59.326 52.381 0.00 0.00 0.00 6.13
3966 4135 2.612672 GAGGGAGTATAAAACAAGCGGC 59.387 50.000 0.00 0.00 0.00 6.53
3967 4136 3.871594 CAGAGGGAGTATAAAACAAGCGG 59.128 47.826 0.00 0.00 0.00 5.52
3968 4137 4.504858 ACAGAGGGAGTATAAAACAAGCG 58.495 43.478 0.00 0.00 0.00 4.68
3969 4138 7.606839 AGTTTACAGAGGGAGTATAAAACAAGC 59.393 37.037 0.00 0.00 0.00 4.01
3980 4149 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.