Multiple sequence alignment - TraesCS5D01G038100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G038100 chr5D 100.000 3314 0 0 1 3314 37137815 37141128 0.000000e+00 6120.0
1 TraesCS5D01G038100 chr5D 100.000 86 0 0 2494 2579 501123003 501122918 3.420000e-35 159.0
2 TraesCS5D01G038100 chr5D 95.556 90 4 0 2492 2581 343797563 343797652 9.580000e-31 145.0
3 TraesCS5D01G038100 chr5D 81.366 161 21 6 2938 3097 56457642 56457794 4.490000e-24 122.0
4 TraesCS5D01G038100 chr5A 83.515 2566 284 60 1 2499 26134783 26137276 0.000000e+00 2266.0
5 TraesCS5D01G038100 chr5A 86.087 345 36 9 2879 3215 31160013 31160353 8.740000e-96 361.0
6 TraesCS5D01G038100 chr5A 82.986 288 25 15 2889 3173 26138246 26138512 4.270000e-59 239.0
7 TraesCS5D01G038100 chr5A 92.537 67 5 0 2981 3047 44986444 44986510 2.720000e-16 97.1
8 TraesCS5D01G038100 chr3D 75.812 1108 208 34 1028 2108 591888929 591890003 1.060000e-139 507.0
9 TraesCS5D01G038100 chr1D 84.009 444 60 6 1028 1470 445996547 445996980 1.840000e-112 416.0
10 TraesCS5D01G038100 chr3B 82.152 381 56 6 1024 1398 792738838 792738464 1.920000e-82 316.0
11 TraesCS5D01G038100 chr3B 78.166 458 88 7 1002 1453 812488976 812488525 7.000000e-72 281.0
12 TraesCS5D01G038100 chr3B 78.166 458 88 7 1002 1453 819704060 819704511 7.000000e-72 281.0
13 TraesCS5D01G038100 chr5B 85.294 238 26 6 2982 3217 59168174 59168404 1.540000e-58 237.0
14 TraesCS5D01G038100 chr5B 81.818 165 22 5 2938 3101 59167978 59168135 7.460000e-27 132.0
15 TraesCS5D01G038100 chr5B 91.358 81 7 0 805 885 27808181 27808261 9.720000e-21 111.0
16 TraesCS5D01G038100 chr4A 75.410 427 85 19 1036 1449 567680505 567680924 4.370000e-44 189.0
17 TraesCS5D01G038100 chr4B 78.519 270 49 8 1036 1299 49745894 49745628 5.690000e-38 169.0
18 TraesCS5D01G038100 chr4D 74.645 422 84 20 1034 1439 34670755 34670341 7.360000e-37 165.0
19 TraesCS5D01G038100 chr7D 96.667 90 2 1 2492 2580 602639023 602639112 7.410000e-32 148.0
20 TraesCS5D01G038100 chr7D 89.815 108 8 3 2476 2583 45835312 45835416 5.770000e-28 135.0
21 TraesCS5D01G038100 chr2A 95.604 91 4 0 2492 2582 145199875 145199965 2.660000e-31 147.0
22 TraesCS5D01G038100 chr2A 92.857 98 7 0 2482 2579 712843525 712843622 3.450000e-30 143.0
23 TraesCS5D01G038100 chr3A 95.556 90 4 0 2494 2583 698167488 698167577 9.580000e-31 145.0
24 TraesCS5D01G038100 chr3A 92.079 101 5 3 2491 2591 235839538 235839441 4.460000e-29 139.0
25 TraesCS5D01G038100 chr2D 87.395 119 10 5 2484 2598 99134621 99134738 7.460000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G038100 chr5D 37137815 37141128 3313 False 6120.0 6120 100.0000 1 3314 1 chr5D.!!$F1 3313
1 TraesCS5D01G038100 chr5A 26134783 26138512 3729 False 1252.5 2266 83.2505 1 3173 2 chr5A.!!$F3 3172
2 TraesCS5D01G038100 chr3D 591888929 591890003 1074 False 507.0 507 75.8120 1028 2108 1 chr3D.!!$F1 1080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1046 0.036732 CCTACCCACAGCAGCAAGAA 59.963 55.0 0.0 0.0 0.0 2.52 F
2005 2097 0.037232 GGACAAGTTCCCCTCTGTCG 60.037 60.0 0.0 0.0 38.7 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2312 0.108041 TGAGATTCCCGGGCGTTTAC 60.108 55.0 18.49 6.03 0.00 2.01 R
2814 2931 0.251877 TGACGTCACCCTGGGATACA 60.252 55.0 22.23 7.63 39.74 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.701031 TTCCAGAAGGCCACCGTCAA 61.701 55.000 5.01 0.00 34.53 3.18
30 31 0.251916 CCAGAAGGCCACCGTCAATA 59.748 55.000 5.01 0.00 34.53 1.90
31 32 1.369625 CAGAAGGCCACCGTCAATAC 58.630 55.000 5.01 0.00 34.53 1.89
35 36 1.520787 GGCCACCGTCAATACTCCG 60.521 63.158 0.00 0.00 0.00 4.63
48 49 0.673333 TACTCCGACGGTTAGCGTGA 60.673 55.000 15.74 5.47 0.00 4.35
49 50 1.226323 CTCCGACGGTTAGCGTGAG 60.226 63.158 15.74 11.84 0.00 3.51
79 80 1.414866 TAGTGCCAGTGTCCCAAGCA 61.415 55.000 0.00 0.00 0.00 3.91
83 84 1.379916 CCAGTGTCCCAAGCATCCA 59.620 57.895 0.00 0.00 0.00 3.41
90 91 2.364970 TGTCCCAAGCATCCAAAACAAG 59.635 45.455 0.00 0.00 0.00 3.16
95 96 2.514205 AGCATCCAAAACAAGCACAC 57.486 45.000 0.00 0.00 0.00 3.82
120 124 2.045045 TTGCTGCCGGGAAGATGG 60.045 61.111 6.09 0.00 0.00 3.51
186 192 3.123620 CCGCTTGCTCTGGCTGTC 61.124 66.667 0.00 0.00 39.59 3.51
202 208 3.777556 TCTGCCGACTGCTGAAGA 58.222 55.556 0.00 0.00 43.93 2.87
204 210 0.610174 TCTGCCGACTGCTGAAGATT 59.390 50.000 0.00 0.00 43.93 2.40
205 211 0.725686 CTGCCGACTGCTGAAGATTG 59.274 55.000 0.00 0.00 41.11 2.67
207 213 1.160137 GCCGACTGCTGAAGATTGTT 58.840 50.000 0.00 0.00 36.87 2.83
209 215 2.413371 GCCGACTGCTGAAGATTGTTTC 60.413 50.000 0.00 0.00 36.87 2.78
210 216 3.070018 CCGACTGCTGAAGATTGTTTCT 58.930 45.455 0.00 0.00 35.70 2.52
268 296 7.194607 CAGAGATTGCCGTTGTGAATATAAT 57.805 36.000 0.00 0.00 0.00 1.28
337 365 9.177304 CAACAATCGACGTAACTATACATATGT 57.823 33.333 13.93 13.93 32.02 2.29
383 411 4.426736 TCAGGCTGCTGATCATTATTCA 57.573 40.909 10.34 0.00 0.00 2.57
454 482 3.241741 GCGCATGGATTTTCACATTTTCG 60.242 43.478 0.30 0.00 0.00 3.46
456 484 4.244862 GCATGGATTTTCACATTTTCGGT 58.755 39.130 0.00 0.00 0.00 4.69
457 485 4.091800 GCATGGATTTTCACATTTTCGGTG 59.908 41.667 0.00 0.00 37.60 4.94
459 487 5.119931 TGGATTTTCACATTTTCGGTGAG 57.880 39.130 0.00 0.00 45.20 3.51
513 541 2.387757 CCCCCGTTCCATTCATTGAAT 58.612 47.619 6.06 6.06 31.86 2.57
588 616 7.977789 TGTGTAGATTCAGCATTTCAAGTTA 57.022 32.000 0.00 0.00 0.00 2.24
600 628 8.697067 CAGCATTTCAAGTTACATTTTGAAGAG 58.303 33.333 0.73 0.18 42.35 2.85
617 645 9.814899 TTTTGAAGAGAAAGTTATTTCAATGCA 57.185 25.926 0.00 0.00 46.10 3.96
620 648 8.849168 TGAAGAGAAAGTTATTTCAATGCAAGA 58.151 29.630 0.00 0.00 46.10 3.02
621 649 9.683069 GAAGAGAAAGTTATTTCAATGCAAGAA 57.317 29.630 0.00 0.00 46.10 2.52
634 662 8.890124 TTCAATGCAAGAAATGAGAAAATTGA 57.110 26.923 0.00 0.00 31.58 2.57
635 663 8.890124 TCAATGCAAGAAATGAGAAAATTGAA 57.110 26.923 0.00 0.00 30.78 2.69
636 664 9.327628 TCAATGCAAGAAATGAGAAAATTGAAA 57.672 25.926 0.00 0.00 30.78 2.69
637 665 9.938670 CAATGCAAGAAATGAGAAAATTGAAAA 57.061 25.926 0.00 0.00 0.00 2.29
660 688 8.488651 AAATTGAAAATGCATTCTCTCATTCC 57.511 30.769 13.38 0.00 32.27 3.01
662 690 6.203808 TGAAAATGCATTCTCTCATTCCAG 57.796 37.500 13.38 0.00 32.27 3.86
665 693 5.831702 AATGCATTCTCTCATTCCAGTTC 57.168 39.130 5.99 0.00 0.00 3.01
666 694 3.614092 TGCATTCTCTCATTCCAGTTCC 58.386 45.455 0.00 0.00 0.00 3.62
667 695 2.948315 GCATTCTCTCATTCCAGTTCCC 59.052 50.000 0.00 0.00 0.00 3.97
668 696 3.549794 CATTCTCTCATTCCAGTTCCCC 58.450 50.000 0.00 0.00 0.00 4.81
670 698 3.776731 TCTCTCATTCCAGTTCCCCTA 57.223 47.619 0.00 0.00 0.00 3.53
671 699 4.074799 TCTCTCATTCCAGTTCCCCTAA 57.925 45.455 0.00 0.00 0.00 2.69
672 700 4.435137 TCTCTCATTCCAGTTCCCCTAAA 58.565 43.478 0.00 0.00 0.00 1.85
673 701 4.225267 TCTCTCATTCCAGTTCCCCTAAAC 59.775 45.833 0.00 0.00 0.00 2.01
680 740 5.494390 TCCAGTTCCCCTAAACTACTTTC 57.506 43.478 0.00 0.00 37.38 2.62
720 780 9.327628 CATGTAATCAGTCATTTGATCTTCTCT 57.672 33.333 0.00 0.00 36.81 3.10
721 781 8.939201 TGTAATCAGTCATTTGATCTTCTCTC 57.061 34.615 0.00 0.00 36.81 3.20
722 782 8.534496 TGTAATCAGTCATTTGATCTTCTCTCA 58.466 33.333 0.00 0.00 36.81 3.27
723 783 9.545105 GTAATCAGTCATTTGATCTTCTCTCAT 57.455 33.333 0.00 0.00 36.81 2.90
725 785 9.545105 AATCAGTCATTTGATCTTCTCTCATAC 57.455 33.333 0.00 0.00 36.81 2.39
726 786 8.071177 TCAGTCATTTGATCTTCTCTCATACA 57.929 34.615 0.00 0.00 0.00 2.29
727 787 8.702819 TCAGTCATTTGATCTTCTCTCATACAT 58.297 33.333 0.00 0.00 0.00 2.29
728 788 9.327628 CAGTCATTTGATCTTCTCTCATACATT 57.672 33.333 0.00 0.00 0.00 2.71
775 835 4.502950 GCCCATTGTTGTCATTTCCAAGAA 60.503 41.667 0.00 0.00 30.86 2.52
779 839 3.963665 TGTTGTCATTTCCAAGAAAGCG 58.036 40.909 0.00 0.00 0.00 4.68
780 840 3.629855 TGTTGTCATTTCCAAGAAAGCGA 59.370 39.130 0.00 0.00 0.00 4.93
781 841 4.097135 TGTTGTCATTTCCAAGAAAGCGAA 59.903 37.500 0.00 0.00 0.00 4.70
801 861 2.284276 CCAATGGTGGCCATGCACA 61.284 57.895 9.72 6.80 44.40 4.57
803 863 1.533513 AATGGTGGCCATGCACACA 60.534 52.632 9.72 1.92 44.40 3.72
826 891 3.467374 TTGAATTTGAACCCCAACAGC 57.533 42.857 0.00 0.00 33.85 4.40
832 897 1.456705 GAACCCCAACAGCCCAACA 60.457 57.895 0.00 0.00 0.00 3.33
833 898 1.744320 GAACCCCAACAGCCCAACAC 61.744 60.000 0.00 0.00 0.00 3.32
909 974 1.589716 GCTGCTCCGCCTTCACATTT 61.590 55.000 0.00 0.00 0.00 2.32
917 982 1.136252 CGCCTTCACATTTCACACTCG 60.136 52.381 0.00 0.00 0.00 4.18
932 997 3.006110 CACACTCGAACCCCTACTTAACA 59.994 47.826 0.00 0.00 0.00 2.41
934 999 3.992427 CACTCGAACCCCTACTTAACAAC 59.008 47.826 0.00 0.00 0.00 3.32
935 1000 3.007290 ACTCGAACCCCTACTTAACAACC 59.993 47.826 0.00 0.00 0.00 3.77
942 1007 3.073356 CCCCTACTTAACAACCACCTTCA 59.927 47.826 0.00 0.00 0.00 3.02
950 1015 1.278127 ACAACCACCTTCATCTACCCG 59.722 52.381 0.00 0.00 0.00 5.28
953 1018 1.515954 CACCTTCATCTACCCGCGT 59.484 57.895 4.92 0.00 0.00 6.01
959 1024 0.454600 TCATCTACCCGCGTTCAGAC 59.545 55.000 4.92 0.00 0.00 3.51
977 1042 1.127567 ACTTCCTACCCACAGCAGCA 61.128 55.000 0.00 0.00 0.00 4.41
980 1045 0.835971 TCCTACCCACAGCAGCAAGA 60.836 55.000 0.00 0.00 0.00 3.02
981 1046 0.036732 CCTACCCACAGCAGCAAGAA 59.963 55.000 0.00 0.00 0.00 2.52
982 1047 1.340405 CCTACCCACAGCAGCAAGAAT 60.340 52.381 0.00 0.00 0.00 2.40
983 1048 2.012673 CTACCCACAGCAGCAAGAATC 58.987 52.381 0.00 0.00 0.00 2.52
984 1049 0.610232 ACCCACAGCAGCAAGAATCC 60.610 55.000 0.00 0.00 0.00 3.01
985 1050 0.609957 CCCACAGCAGCAAGAATCCA 60.610 55.000 0.00 0.00 0.00 3.41
986 1051 1.250328 CCACAGCAGCAAGAATCCAA 58.750 50.000 0.00 0.00 0.00 3.53
987 1052 1.068055 CCACAGCAGCAAGAATCCAAC 60.068 52.381 0.00 0.00 0.00 3.77
988 1053 1.884579 CACAGCAGCAAGAATCCAACT 59.115 47.619 0.00 0.00 0.00 3.16
989 1054 2.095364 CACAGCAGCAAGAATCCAACTC 60.095 50.000 0.00 0.00 0.00 3.01
990 1055 1.471684 CAGCAGCAAGAATCCAACTCC 59.528 52.381 0.00 0.00 0.00 3.85
991 1056 0.813821 GCAGCAAGAATCCAACTCCC 59.186 55.000 0.00 0.00 0.00 4.30
992 1057 1.887956 GCAGCAAGAATCCAACTCCCA 60.888 52.381 0.00 0.00 0.00 4.37
993 1058 1.815003 CAGCAAGAATCCAACTCCCAC 59.185 52.381 0.00 0.00 0.00 4.61
994 1059 1.425066 AGCAAGAATCCAACTCCCACA 59.575 47.619 0.00 0.00 0.00 4.17
995 1060 1.541588 GCAAGAATCCAACTCCCACAC 59.458 52.381 0.00 0.00 0.00 3.82
996 1061 2.862541 CAAGAATCCAACTCCCACACA 58.137 47.619 0.00 0.00 0.00 3.72
997 1062 2.554032 CAAGAATCCAACTCCCACACAC 59.446 50.000 0.00 0.00 0.00 3.82
998 1063 2.057922 AGAATCCAACTCCCACACACT 58.942 47.619 0.00 0.00 0.00 3.55
999 1064 2.039084 AGAATCCAACTCCCACACACTC 59.961 50.000 0.00 0.00 0.00 3.51
1000 1065 1.434188 ATCCAACTCCCACACACTCA 58.566 50.000 0.00 0.00 0.00 3.41
1001 1066 1.434188 TCCAACTCCCACACACTCAT 58.566 50.000 0.00 0.00 0.00 2.90
1002 1067 1.072173 TCCAACTCCCACACACTCATG 59.928 52.381 0.00 0.00 0.00 3.07
1003 1068 1.202806 CCAACTCCCACACACTCATGT 60.203 52.381 0.00 0.00 40.80 3.21
1004 1069 2.146342 CAACTCCCACACACTCATGTC 58.854 52.381 0.00 0.00 36.72 3.06
1021 1086 4.225717 TCATGTCAAACCTCTCATCCATCA 59.774 41.667 0.00 0.00 0.00 3.07
1022 1087 4.639078 TGTCAAACCTCTCATCCATCAA 57.361 40.909 0.00 0.00 0.00 2.57
1023 1088 4.582869 TGTCAAACCTCTCATCCATCAAG 58.417 43.478 0.00 0.00 0.00 3.02
1024 1089 3.376546 GTCAAACCTCTCATCCATCAAGC 59.623 47.826 0.00 0.00 0.00 4.01
1117 1182 1.339824 ACGACCTCGACCTCTACATGT 60.340 52.381 2.69 2.69 43.02 3.21
1210 1275 4.429212 CGTGCCGGTGGATCGTCA 62.429 66.667 1.90 0.00 0.00 4.35
1233 1298 3.175724 GAGCTCTTCGACGTCGGA 58.824 61.111 35.05 27.99 40.29 4.55
1314 1379 2.264794 CTCCGCCGGTACTGCTTT 59.735 61.111 1.63 0.00 36.07 3.51
1338 1403 1.379710 TACTACCCACGGCGGCTTA 60.380 57.895 13.24 0.00 0.00 3.09
1470 1535 1.376037 CGCTCTCTCCGGCCTTTTT 60.376 57.895 0.00 0.00 0.00 1.94
1475 1540 3.365265 CTCCGGCCTTTTTGCGCT 61.365 61.111 9.73 0.00 0.00 5.92
1491 1556 1.665916 GCTGTCGCTCACTTCTGCA 60.666 57.895 0.00 0.00 0.00 4.41
1527 1604 0.254178 CCACCCTCATCTTGGTCTGG 59.746 60.000 0.00 0.00 30.70 3.86
1541 1621 0.462047 GTCTGGGATAGTGGTTGCGG 60.462 60.000 0.00 0.00 0.00 5.69
1542 1622 0.907704 TCTGGGATAGTGGTTGCGGT 60.908 55.000 0.00 0.00 0.00 5.68
1565 1645 0.250234 TACATGGCTGCTCCTGACAC 59.750 55.000 0.00 0.00 35.26 3.67
1576 1656 1.202582 CTCCTGACACCGACGATTTCT 59.797 52.381 0.00 0.00 0.00 2.52
1580 1660 1.683790 GACACCGACGATTTCTGCCG 61.684 60.000 0.00 0.00 0.00 5.69
1592 1672 0.395586 TTCTGCCGGGATTTGGATGG 60.396 55.000 2.18 0.00 0.00 3.51
1598 1678 1.490490 CCGGGATTTGGATGGAGAAGA 59.510 52.381 0.00 0.00 0.00 2.87
1599 1679 2.486191 CCGGGATTTGGATGGAGAAGAG 60.486 54.545 0.00 0.00 0.00 2.85
1600 1680 2.435805 CGGGATTTGGATGGAGAAGAGA 59.564 50.000 0.00 0.00 0.00 3.10
1601 1681 3.072184 CGGGATTTGGATGGAGAAGAGAT 59.928 47.826 0.00 0.00 0.00 2.75
1602 1682 4.445448 CGGGATTTGGATGGAGAAGAGATT 60.445 45.833 0.00 0.00 0.00 2.40
1604 1684 6.521427 CGGGATTTGGATGGAGAAGAGATTAT 60.521 42.308 0.00 0.00 0.00 1.28
1605 1685 7.237255 GGGATTTGGATGGAGAAGAGATTATT 58.763 38.462 0.00 0.00 0.00 1.40
1610 1690 6.294473 TGGATGGAGAAGAGATTATTGAAGC 58.706 40.000 0.00 0.00 0.00 3.86
1612 1692 5.698741 TGGAGAAGAGATTATTGAAGCCA 57.301 39.130 0.00 0.00 0.00 4.75
1616 1696 6.427547 GGAGAAGAGATTATTGAAGCCATGAG 59.572 42.308 0.00 0.00 0.00 2.90
1617 1697 5.764192 AGAAGAGATTATTGAAGCCATGAGC 59.236 40.000 0.00 0.00 44.25 4.26
1636 1716 2.012673 GCTCATTCTTTCTGATGCCGT 58.987 47.619 0.00 0.00 0.00 5.68
1638 1718 3.119708 GCTCATTCTTTCTGATGCCGTTT 60.120 43.478 0.00 0.00 0.00 3.60
1644 1724 1.255882 TTCTGATGCCGTTTGCCATT 58.744 45.000 0.00 0.00 40.16 3.16
1647 1727 1.216178 GATGCCGTTTGCCATTGCT 59.784 52.632 0.00 0.00 40.16 3.91
1685 1765 2.155197 GATGGTTGGCAGGGAAGGGT 62.155 60.000 0.00 0.00 0.00 4.34
1712 1792 2.753931 CTTCCGGTTGCTTTGGCTGC 62.754 60.000 0.00 0.00 39.59 5.25
1726 1806 1.372087 GGCTGCCAAGATCTTCCGTG 61.372 60.000 15.17 0.00 0.00 4.94
1733 1813 3.193263 CCAAGATCTTCCGTGTGATGAG 58.807 50.000 4.57 0.00 31.36 2.90
1738 1818 1.364626 CTTCCGTGTGATGAGGCTGC 61.365 60.000 0.00 0.00 0.00 5.25
1757 1837 3.875727 CTGCTCCACATTGATCCTTACAG 59.124 47.826 0.00 0.00 0.00 2.74
1791 1877 5.364778 GACAAAGTTTTTATGGGGTTTGCT 58.635 37.500 0.00 0.00 0.00 3.91
1796 1882 4.082245 AGTTTTTATGGGGTTTGCTGATCG 60.082 41.667 0.00 0.00 0.00 3.69
1822 1908 2.270205 CAGGAGATGCCAACCGCT 59.730 61.111 0.00 0.00 40.02 5.52
1824 1910 1.078143 AGGAGATGCCAACCGCTTC 60.078 57.895 0.00 0.00 41.00 3.86
1833 1919 0.537371 CCAACCGCTTCTTCCTGGTT 60.537 55.000 0.00 0.00 45.24 3.67
1842 1928 3.683802 CTTCTTCCTGGTTGAATCTGCT 58.316 45.455 0.00 0.00 0.00 4.24
1849 1935 3.618351 CTGGTTGAATCTGCTGGAGAAT 58.382 45.455 2.14 0.00 33.12 2.40
1860 1946 2.439135 TGCTGGAGAATTGCTGGCTATA 59.561 45.455 0.00 0.00 0.00 1.31
1862 1948 3.244353 GCTGGAGAATTGCTGGCTATAGA 60.244 47.826 3.21 0.00 0.00 1.98
1863 1949 4.567971 CTGGAGAATTGCTGGCTATAGAG 58.432 47.826 3.21 0.00 0.00 2.43
1878 1964 0.608130 TAGAGAACGTGCAGCCACAT 59.392 50.000 0.00 0.00 42.17 3.21
1885 1971 0.592637 CGTGCAGCCACATCTGAAAA 59.407 50.000 0.00 0.00 42.17 2.29
1939 2031 2.580815 CAGTGGAGAGCATCGGCA 59.419 61.111 0.00 0.00 44.61 5.69
1962 2054 2.483876 CGTGCCATCTTCATCGGTTAT 58.516 47.619 0.00 0.00 0.00 1.89
1972 2064 1.002142 TCATCGGTTATCGTAGGTGCG 60.002 52.381 0.00 0.00 40.32 5.34
2005 2097 0.037232 GGACAAGTTCCCCTCTGTCG 60.037 60.000 0.00 0.00 38.70 4.35
2008 2100 0.969894 CAAGTTCCCCTCTGTCGTCT 59.030 55.000 0.00 0.00 0.00 4.18
2026 2118 3.128764 CGTCTCCAACTGCATCTACTACA 59.871 47.826 0.00 0.00 0.00 2.74
2033 2125 5.292834 CCAACTGCATCTACTACATCAAGTG 59.707 44.000 0.00 0.00 0.00 3.16
2058 2150 5.981915 CACAGATTCGTCACATGACATCTAT 59.018 40.000 12.32 0.86 44.99 1.98
2108 2202 2.111384 GAGGGTCTGTGAAGCCATAGA 58.889 52.381 0.00 0.00 39.34 1.98
2109 2203 2.703007 GAGGGTCTGTGAAGCCATAGAT 59.297 50.000 0.00 0.00 41.52 1.98
2110 2204 2.703007 AGGGTCTGTGAAGCCATAGATC 59.297 50.000 0.00 0.00 41.52 2.75
2111 2205 3.118905 GGTCTGTGAAGCCATAGATCC 57.881 52.381 0.00 0.00 41.52 3.36
2112 2206 2.224402 GGTCTGTGAAGCCATAGATCCC 60.224 54.545 0.00 0.00 41.52 3.85
2113 2207 2.703007 GTCTGTGAAGCCATAGATCCCT 59.297 50.000 0.00 0.00 41.52 4.20
2114 2208 3.135530 GTCTGTGAAGCCATAGATCCCTT 59.864 47.826 0.00 0.00 41.52 3.95
2115 2209 4.345257 GTCTGTGAAGCCATAGATCCCTTA 59.655 45.833 0.00 0.00 41.52 2.69
2116 2210 4.968719 TCTGTGAAGCCATAGATCCCTTAA 59.031 41.667 0.00 0.00 35.92 1.85
2117 2211 5.036117 TGTGAAGCCATAGATCCCTTAAC 57.964 43.478 0.00 0.00 0.00 2.01
2118 2212 4.141482 TGTGAAGCCATAGATCCCTTAACC 60.141 45.833 0.00 0.00 0.00 2.85
2119 2213 3.394606 TGAAGCCATAGATCCCTTAACCC 59.605 47.826 0.00 0.00 0.00 4.11
2120 2214 2.349445 AGCCATAGATCCCTTAACCCC 58.651 52.381 0.00 0.00 0.00 4.95
2121 2215 1.354705 GCCATAGATCCCTTAACCCCC 59.645 57.143 0.00 0.00 0.00 5.40
2122 2216 2.713595 CCATAGATCCCTTAACCCCCA 58.286 52.381 0.00 0.00 0.00 4.96
2123 2217 2.375509 CCATAGATCCCTTAACCCCCAC 59.624 54.545 0.00 0.00 0.00 4.61
2124 2218 2.201523 TAGATCCCTTAACCCCCACC 57.798 55.000 0.00 0.00 0.00 4.61
2125 2219 0.122435 AGATCCCTTAACCCCCACCA 59.878 55.000 0.00 0.00 0.00 4.17
2126 2220 1.231963 GATCCCTTAACCCCCACCAT 58.768 55.000 0.00 0.00 0.00 3.55
2127 2221 1.145119 GATCCCTTAACCCCCACCATC 59.855 57.143 0.00 0.00 0.00 3.51
2128 2222 0.178828 TCCCTTAACCCCCACCATCA 60.179 55.000 0.00 0.00 0.00 3.07
2129 2223 0.933700 CCCTTAACCCCCACCATCAT 59.066 55.000 0.00 0.00 0.00 2.45
2136 2230 0.397394 CCCCCACCATCATCATGCAA 60.397 55.000 0.00 0.00 0.00 4.08
2137 2231 0.748450 CCCCACCATCATCATGCAAC 59.252 55.000 0.00 0.00 0.00 4.17
2146 2240 4.037208 CCATCATCATGCAACCCTTCTTAC 59.963 45.833 0.00 0.00 0.00 2.34
2159 2259 0.623723 TTCTTACACCCCATCAGGCC 59.376 55.000 0.00 0.00 0.00 5.19
2161 2261 0.331278 CTTACACCCCATCAGGCCAA 59.669 55.000 5.01 0.00 0.00 4.52
2190 2290 2.821969 CAAACCTCCTTTCACCATCCTG 59.178 50.000 0.00 0.00 0.00 3.86
2202 2302 1.446791 CATCCTGCAGCTCCTCTCC 59.553 63.158 8.66 0.00 0.00 3.71
2212 2312 2.010582 GCTCCTCTCCAGCTACACCG 62.011 65.000 0.00 0.00 33.75 4.94
2218 2318 1.200716 TCTCCAGCTACACCGTAAACG 59.799 52.381 0.00 0.00 39.44 3.60
2236 2336 1.821332 GCCCGGGAATCTCAGCTTG 60.821 63.158 29.31 0.00 0.00 4.01
2237 2337 1.907739 CCCGGGAATCTCAGCTTGA 59.092 57.895 18.48 0.00 0.00 3.02
2273 2373 2.070639 AGGACCTTCTTCCTGGTGC 58.929 57.895 0.00 0.00 44.97 5.01
2276 2376 1.202940 GGACCTTCTTCCTGGTGCTTT 60.203 52.381 0.00 0.00 40.77 3.51
2281 2381 0.250727 TCTTCCTGGTGCTTTTCCGG 60.251 55.000 0.00 0.00 0.00 5.14
2282 2382 0.250727 CTTCCTGGTGCTTTTCCGGA 60.251 55.000 0.00 0.00 33.49 5.14
2285 2385 1.301401 CTGGTGCTTTTCCGGACGA 60.301 57.895 1.83 0.00 33.49 4.20
2287 2387 2.664436 GGTGCTTTTCCGGACGACG 61.664 63.158 1.83 0.00 43.80 5.12
2297 2397 1.505353 CGGACGACGGCTCTTACTT 59.495 57.895 0.00 0.00 39.42 2.24
2302 2402 2.599082 GACGACGGCTCTTACTTTGATG 59.401 50.000 0.00 0.00 0.00 3.07
2305 2405 3.060895 CGACGGCTCTTACTTTGATGAAC 59.939 47.826 0.00 0.00 0.00 3.18
2331 2440 8.671028 CATGACTGAAGTATTGATGAATGTCAA 58.329 33.333 0.00 0.00 41.88 3.18
2342 2451 8.975663 ATTGATGAATGTCAATGATGTACTCT 57.024 30.769 1.66 0.00 44.75 3.24
2349 2458 3.555139 GTCAATGATGTACTCTGCTGAGC 59.445 47.826 19.49 0.00 43.85 4.26
2356 2465 3.214328 TGTACTCTGCTGAGCGATGATA 58.786 45.455 19.49 1.83 43.85 2.15
2360 2469 3.573538 ACTCTGCTGAGCGATGATAGATT 59.426 43.478 19.49 0.00 43.85 2.40
2361 2470 3.910648 TCTGCTGAGCGATGATAGATTG 58.089 45.455 0.00 0.00 0.00 2.67
2368 2477 5.600696 TGAGCGATGATAGATTGCTTGTTA 58.399 37.500 0.00 0.00 38.78 2.41
2369 2478 6.226052 TGAGCGATGATAGATTGCTTGTTAT 58.774 36.000 0.00 0.00 38.78 1.89
2386 2495 6.255020 GCTTGTTATCAGGAAGAAATTGCATG 59.745 38.462 0.00 0.00 0.00 4.06
2388 2497 7.936496 TGTTATCAGGAAGAAATTGCATGTA 57.064 32.000 0.00 0.00 0.00 2.29
2401 2510 3.946950 CATGTATGCTCGAGTCGGT 57.053 52.632 15.13 0.40 0.00 4.69
2414 2523 1.456165 GAGTCGGTCGTCTTCTTTTGC 59.544 52.381 0.00 0.00 0.00 3.68
2426 2535 2.600470 TCTTTTGCTTGCTTTGTGGG 57.400 45.000 0.00 0.00 0.00 4.61
2432 2541 2.875296 TGCTTGCTTTGTGGGAACTAT 58.125 42.857 0.00 0.00 0.00 2.12
2439 2548 4.286032 TGCTTTGTGGGAACTATCTAGTGT 59.714 41.667 0.00 0.00 36.50 3.55
2442 2551 4.202245 TGTGGGAACTATCTAGTGTTGC 57.798 45.455 8.21 8.21 36.50 4.17
2443 2552 3.580895 TGTGGGAACTATCTAGTGTTGCA 59.419 43.478 14.76 0.00 36.46 4.08
2451 2560 7.549488 GGAACTATCTAGTGTTGCAGTGTTAAT 59.451 37.037 10.55 0.00 36.50 1.40
2456 2565 7.561021 TCTAGTGTTGCAGTGTTAATTTCAA 57.439 32.000 0.00 0.00 0.00 2.69
2501 2610 8.840200 TTCCTTCATCTTCTTATGTACTACCT 57.160 34.615 0.00 0.00 0.00 3.08
2502 2611 8.466617 TCCTTCATCTTCTTATGTACTACCTC 57.533 38.462 0.00 0.00 0.00 3.85
2503 2612 7.506261 TCCTTCATCTTCTTATGTACTACCTCC 59.494 40.741 0.00 0.00 0.00 4.30
2504 2613 6.879276 TCATCTTCTTATGTACTACCTCCG 57.121 41.667 0.00 0.00 0.00 4.63
2505 2614 6.363065 TCATCTTCTTATGTACTACCTCCGT 58.637 40.000 0.00 0.00 0.00 4.69
2506 2615 7.512130 TCATCTTCTTATGTACTACCTCCGTA 58.488 38.462 0.00 0.00 0.00 4.02
2507 2616 7.994911 TCATCTTCTTATGTACTACCTCCGTAA 59.005 37.037 0.00 0.00 0.00 3.18
2508 2617 8.627403 CATCTTCTTATGTACTACCTCCGTAAA 58.373 37.037 0.00 0.00 0.00 2.01
2509 2618 8.218338 TCTTCTTATGTACTACCTCCGTAAAG 57.782 38.462 0.00 0.00 0.00 1.85
2510 2619 8.049117 TCTTCTTATGTACTACCTCCGTAAAGA 58.951 37.037 0.00 0.00 0.00 2.52
2511 2620 8.579850 TTCTTATGTACTACCTCCGTAAAGAA 57.420 34.615 0.00 0.00 0.00 2.52
2512 2621 8.579850 TCTTATGTACTACCTCCGTAAAGAAA 57.420 34.615 0.00 0.00 0.00 2.52
2513 2622 9.193806 TCTTATGTACTACCTCCGTAAAGAAAT 57.806 33.333 0.00 0.00 0.00 2.17
2521 2630 9.418839 ACTACCTCCGTAAAGAAATATAAGAGT 57.581 33.333 0.00 0.00 0.00 3.24
2522 2631 9.680315 CTACCTCCGTAAAGAAATATAAGAGTG 57.320 37.037 0.00 0.00 0.00 3.51
2523 2632 8.075761 ACCTCCGTAAAGAAATATAAGAGTGT 57.924 34.615 0.00 0.00 0.00 3.55
2524 2633 8.537858 ACCTCCGTAAAGAAATATAAGAGTGTT 58.462 33.333 0.00 0.00 0.00 3.32
2525 2634 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
2552 2661 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
2553 2662 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
2554 2663 9.733219 ATCACTAAAGTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 37.23 5.03
2555 2664 8.954350 TCACTAAAGTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 37.23 4.09
2556 2665 9.570488 CACTAAAGTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 37.23 2.85
2570 2679 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2571 2680 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2572 2681 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2573 2682 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2574 2683 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2575 2684 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2576 2685 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2577 2686 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2587 2696 5.450818 TTACGGAGGGAGTACTAGGTTTA 57.549 43.478 0.00 0.00 0.00 2.01
2595 2704 5.597594 AGGGAGTACTAGGTTTATTCTTCCG 59.402 44.000 0.00 0.00 0.00 4.30
2596 2705 5.595952 GGGAGTACTAGGTTTATTCTTCCGA 59.404 44.000 0.00 0.00 0.00 4.55
2605 2714 7.430992 AGGTTTATTCTTCCGAAGTTTGTAC 57.569 36.000 8.01 3.31 31.60 2.90
2615 2724 2.159707 CGAAGTTTGTACCGCTGAATGG 60.160 50.000 0.00 0.00 0.00 3.16
2617 2726 2.151202 AGTTTGTACCGCTGAATGGTG 58.849 47.619 0.00 0.00 40.73 4.17
2618 2727 0.878416 TTTGTACCGCTGAATGGTGC 59.122 50.000 0.00 0.00 40.73 5.01
2619 2728 0.036164 TTGTACCGCTGAATGGTGCT 59.964 50.000 2.10 0.00 41.98 4.40
2620 2729 0.673333 TGTACCGCTGAATGGTGCTG 60.673 55.000 2.10 0.00 41.98 4.41
2643 2752 3.276846 AACGGTGTGCGTTCTGGC 61.277 61.111 0.00 0.00 0.00 4.85
2655 2764 0.449388 GTTCTGGCGCTTGAAGATGG 59.551 55.000 7.64 0.00 0.00 3.51
2677 2789 5.534278 TGGTGTCTTGATATTTGTTTGCTGA 59.466 36.000 0.00 0.00 0.00 4.26
2693 2808 2.738314 TGCTGATGTTCACAAGTCGATG 59.262 45.455 0.00 0.00 0.00 3.84
2695 2810 3.187227 GCTGATGTTCACAAGTCGATGTT 59.813 43.478 0.00 0.00 0.00 2.71
2696 2811 4.319766 GCTGATGTTCACAAGTCGATGTTT 60.320 41.667 0.00 0.00 0.00 2.83
2697 2812 5.342806 TGATGTTCACAAGTCGATGTTTC 57.657 39.130 0.00 0.00 0.00 2.78
2698 2813 4.813697 TGATGTTCACAAGTCGATGTTTCA 59.186 37.500 0.00 0.00 0.00 2.69
2699 2814 4.794248 TGTTCACAAGTCGATGTTTCAG 57.206 40.909 0.00 0.00 0.00 3.02
2700 2815 4.188462 TGTTCACAAGTCGATGTTTCAGT 58.812 39.130 0.00 0.00 0.00 3.41
2701 2816 5.353111 TGTTCACAAGTCGATGTTTCAGTA 58.647 37.500 0.00 0.00 0.00 2.74
2702 2817 5.233476 TGTTCACAAGTCGATGTTTCAGTAC 59.767 40.000 0.00 0.00 0.00 2.73
2703 2818 4.939271 TCACAAGTCGATGTTTCAGTACA 58.061 39.130 0.00 0.00 0.00 2.90
2704 2819 5.538118 TCACAAGTCGATGTTTCAGTACAT 58.462 37.500 0.00 0.00 41.30 2.29
2705 2820 5.633601 TCACAAGTCGATGTTTCAGTACATC 59.366 40.000 6.67 6.67 46.98 3.06
2751 2868 1.004745 CCAGTACATTGAAGCCAGGGT 59.995 52.381 0.00 0.00 0.00 4.34
2754 2871 4.331968 CAGTACATTGAAGCCAGGGTTTA 58.668 43.478 5.08 0.00 0.00 2.01
2755 2872 4.764823 CAGTACATTGAAGCCAGGGTTTAA 59.235 41.667 10.77 10.77 0.00 1.52
2756 2873 5.418840 CAGTACATTGAAGCCAGGGTTTAAT 59.581 40.000 14.19 14.19 31.28 1.40
2757 2874 6.016555 AGTACATTGAAGCCAGGGTTTAATT 58.983 36.000 16.71 11.61 29.29 1.40
2758 2875 5.823861 ACATTGAAGCCAGGGTTTAATTT 57.176 34.783 16.71 9.62 29.29 1.82
2759 2876 5.550290 ACATTGAAGCCAGGGTTTAATTTG 58.450 37.500 16.71 11.83 29.29 2.32
2760 2877 5.071653 ACATTGAAGCCAGGGTTTAATTTGT 59.928 36.000 16.71 12.38 29.29 2.83
2763 2880 5.363939 TGAAGCCAGGGTTTAATTTGTTTG 58.636 37.500 5.08 0.00 0.00 2.93
2764 2881 3.738982 AGCCAGGGTTTAATTTGTTTGC 58.261 40.909 0.00 0.00 0.00 3.68
2765 2882 3.390967 AGCCAGGGTTTAATTTGTTTGCT 59.609 39.130 0.00 0.00 0.00 3.91
2766 2883 3.498018 GCCAGGGTTTAATTTGTTTGCTG 59.502 43.478 0.00 0.00 0.00 4.41
2767 2884 3.498018 CCAGGGTTTAATTTGTTTGCTGC 59.502 43.478 0.00 0.00 0.00 5.25
2770 2887 4.126437 GGGTTTAATTTGTTTGCTGCAGT 58.874 39.130 16.64 0.00 0.00 4.40
2771 2888 4.574421 GGGTTTAATTTGTTTGCTGCAGTT 59.426 37.500 16.64 1.15 0.00 3.16
2772 2889 5.065859 GGGTTTAATTTGTTTGCTGCAGTTT 59.934 36.000 16.64 0.00 0.00 2.66
2773 2890 5.964751 GGTTTAATTTGTTTGCTGCAGTTTG 59.035 36.000 16.64 0.00 0.00 2.93
2774 2891 6.403092 GGTTTAATTTGTTTGCTGCAGTTTGT 60.403 34.615 16.64 0.00 0.00 2.83
2775 2892 4.863152 AATTTGTTTGCTGCAGTTTGTC 57.137 36.364 16.64 0.00 0.00 3.18
2777 2894 0.525242 TGTTTGCTGCAGTTTGTCGC 60.525 50.000 16.64 0.00 0.00 5.19
2778 2895 1.065600 TTTGCTGCAGTTTGTCGCC 59.934 52.632 16.64 0.00 0.00 5.54
2779 2896 2.660553 TTTGCTGCAGTTTGTCGCCG 62.661 55.000 16.64 0.00 0.00 6.46
2780 2897 3.649986 GCTGCAGTTTGTCGCCGT 61.650 61.111 16.64 0.00 0.00 5.68
2781 2898 2.551270 CTGCAGTTTGTCGCCGTC 59.449 61.111 5.25 0.00 0.00 4.79
2782 2899 3.281751 CTGCAGTTTGTCGCCGTCG 62.282 63.158 5.25 0.00 0.00 5.12
2784 2901 4.072088 CAGTTTGTCGCCGTCGCC 62.072 66.667 0.00 0.00 35.26 5.54
2796 2913 4.034258 GTCGCCGTCGTGTCAGGA 62.034 66.667 0.00 0.00 36.96 3.86
2798 2915 2.126071 CGCCGTCGTGTCAGGATT 60.126 61.111 0.00 0.00 0.00 3.01
2799 2916 1.138036 CGCCGTCGTGTCAGGATTA 59.862 57.895 0.00 0.00 0.00 1.75
2801 2918 0.454600 GCCGTCGTGTCAGGATTAGA 59.545 55.000 0.00 0.00 0.00 2.10
2803 2920 1.471287 CCGTCGTGTCAGGATTAGACA 59.529 52.381 0.00 0.00 43.23 3.41
2804 2921 2.478031 CCGTCGTGTCAGGATTAGACAG 60.478 54.545 0.00 0.00 45.77 3.51
2805 2922 2.478031 CGTCGTGTCAGGATTAGACAGG 60.478 54.545 9.09 9.09 45.77 4.00
2811 2928 4.938226 GTGTCAGGATTAGACAGGAAAAGG 59.062 45.833 0.00 0.00 45.77 3.11
2812 2929 4.019321 TGTCAGGATTAGACAGGAAAAGGG 60.019 45.833 0.00 0.00 40.80 3.95
2813 2930 3.054361 TCAGGATTAGACAGGAAAAGGGC 60.054 47.826 0.00 0.00 0.00 5.19
2814 2931 3.054065 CAGGATTAGACAGGAAAAGGGCT 60.054 47.826 0.00 0.00 0.00 5.19
2815 2932 3.054065 AGGATTAGACAGGAAAAGGGCTG 60.054 47.826 0.00 0.00 0.00 4.85
2817 2934 4.080526 GGATTAGACAGGAAAAGGGCTGTA 60.081 45.833 0.00 0.00 0.00 2.74
2819 2936 3.636153 AGACAGGAAAAGGGCTGTATC 57.364 47.619 0.00 0.00 0.00 2.24
2820 2937 2.239907 AGACAGGAAAAGGGCTGTATCC 59.760 50.000 0.00 0.00 0.00 2.59
2821 2938 1.285078 ACAGGAAAAGGGCTGTATCCC 59.715 52.381 0.00 0.00 46.93 3.85
2827 2944 2.919043 GGGCTGTATCCCAGGGTG 59.081 66.667 5.01 0.00 45.82 4.61
2828 2945 1.692749 GGGCTGTATCCCAGGGTGA 60.693 63.158 5.01 0.00 45.82 4.02
2829 2946 1.527370 GGCTGTATCCCAGGGTGAC 59.473 63.158 5.01 5.46 41.81 3.67
2830 2947 1.144057 GCTGTATCCCAGGGTGACG 59.856 63.158 5.01 3.23 41.81 4.35
2831 2948 1.614241 GCTGTATCCCAGGGTGACGT 61.614 60.000 5.01 0.00 41.81 4.34
2832 2949 0.460311 CTGTATCCCAGGGTGACGTC 59.540 60.000 9.11 9.11 37.54 4.34
2833 2950 0.251877 TGTATCCCAGGGTGACGTCA 60.252 55.000 15.76 15.76 0.00 4.35
2835 2952 2.313317 GTATCCCAGGGTGACGTCATA 58.687 52.381 23.12 4.23 0.00 2.15
2836 2953 1.874129 ATCCCAGGGTGACGTCATAA 58.126 50.000 23.12 0.00 0.00 1.90
2840 2957 3.386726 TCCCAGGGTGACGTCATAATTAG 59.613 47.826 23.12 10.10 0.00 1.73
2841 2958 3.386726 CCCAGGGTGACGTCATAATTAGA 59.613 47.826 23.12 0.00 0.00 2.10
2842 2959 4.369182 CCAGGGTGACGTCATAATTAGAC 58.631 47.826 23.12 5.73 0.00 2.59
2843 2960 4.369182 CAGGGTGACGTCATAATTAGACC 58.631 47.826 23.12 14.84 32.41 3.85
2844 2961 4.028131 AGGGTGACGTCATAATTAGACCA 58.972 43.478 23.12 0.00 32.41 4.02
2845 2962 4.099573 AGGGTGACGTCATAATTAGACCAG 59.900 45.833 23.12 1.59 32.41 4.00
2846 2963 4.142004 GGGTGACGTCATAATTAGACCAGT 60.142 45.833 23.12 3.85 32.41 4.00
2847 2964 5.068198 GGGTGACGTCATAATTAGACCAGTA 59.932 44.000 23.12 0.00 32.41 2.74
2849 2966 7.208080 GGTGACGTCATAATTAGACCAGTAAT 58.792 38.462 23.12 0.00 32.41 1.89
2851 2968 9.178427 GTGACGTCATAATTAGACCAGTAATAC 57.822 37.037 23.12 0.00 32.41 1.89
2852 2969 9.128404 TGACGTCATAATTAGACCAGTAATACT 57.872 33.333 15.76 0.00 32.41 2.12
2853 2970 9.395707 GACGTCATAATTAGACCAGTAATACTG 57.604 37.037 11.55 13.20 45.53 2.74
2883 3000 4.732285 AATTAAATATGCTGCGTCTCCG 57.268 40.909 0.00 0.00 37.07 4.63
2884 3001 2.148916 TAAATATGCTGCGTCTCCGG 57.851 50.000 0.00 0.00 33.68 5.14
2885 3002 0.178068 AAATATGCTGCGTCTCCGGT 59.822 50.000 0.00 0.00 33.68 5.28
2886 3003 0.178068 AATATGCTGCGTCTCCGGTT 59.822 50.000 0.00 0.00 33.68 4.44
2887 3004 0.249489 ATATGCTGCGTCTCCGGTTC 60.249 55.000 0.00 0.00 33.68 3.62
2897 3682 2.681064 TCCGGTTCGAACCCGGAT 60.681 61.111 36.01 0.00 46.53 4.18
2899 3684 2.574929 CGGTTCGAACCCGGATGA 59.425 61.111 35.50 0.00 46.53 2.92
2900 3685 1.143183 CGGTTCGAACCCGGATGAT 59.857 57.895 35.50 0.00 46.53 2.45
2901 3686 1.151777 CGGTTCGAACCCGGATGATG 61.152 60.000 35.50 18.68 46.53 3.07
2908 3693 0.033208 AACCCGGATGATGCCACAAT 60.033 50.000 0.73 0.00 0.00 2.71
2910 3695 0.386476 CCCGGATGATGCCACAATTG 59.614 55.000 0.73 3.24 0.00 2.32
2920 3707 1.139163 GCCACAATTGTTTTGCTCCG 58.861 50.000 8.77 0.00 0.00 4.63
2931 3718 1.028905 TTTGCTCCGTTTTGTCCAGG 58.971 50.000 0.00 0.00 0.00 4.45
2935 3722 1.226746 CTCCGTTTTGTCCAGGTGAC 58.773 55.000 0.00 0.00 44.72 3.67
2952 3739 3.370978 GGTGACAGTGACGTCATAATTGG 59.629 47.826 23.12 10.07 46.98 3.16
2953 3740 3.994392 GTGACAGTGACGTCATAATTGGT 59.006 43.478 23.12 13.11 46.98 3.67
2954 3741 4.091509 GTGACAGTGACGTCATAATTGGTC 59.908 45.833 23.12 20.17 46.98 4.02
2955 3742 4.021456 TGACAGTGACGTCATAATTGGTCT 60.021 41.667 23.12 8.41 40.94 3.85
2956 3743 4.245660 ACAGTGACGTCATAATTGGTCTG 58.754 43.478 23.12 21.53 0.00 3.51
2957 3744 3.618594 CAGTGACGTCATAATTGGTCTGG 59.381 47.826 23.12 3.13 0.00 3.86
2958 3745 3.260884 AGTGACGTCATAATTGGTCTGGT 59.739 43.478 23.12 0.00 0.00 4.00
2959 3746 3.370978 GTGACGTCATAATTGGTCTGGTG 59.629 47.826 23.12 0.00 0.00 4.17
2960 3747 3.259625 TGACGTCATAATTGGTCTGGTGA 59.740 43.478 15.76 0.00 0.00 4.02
2961 3748 3.596214 ACGTCATAATTGGTCTGGTGAC 58.404 45.455 0.00 0.00 42.22 3.67
2962 3749 3.007506 ACGTCATAATTGGTCTGGTGACA 59.992 43.478 0.00 0.00 44.61 3.58
2963 3750 4.000325 CGTCATAATTGGTCTGGTGACAA 59.000 43.478 0.00 0.00 44.61 3.18
2964 3751 4.635765 CGTCATAATTGGTCTGGTGACAAT 59.364 41.667 0.00 0.00 44.61 2.71
2965 3752 5.815222 CGTCATAATTGGTCTGGTGACAATA 59.185 40.000 0.00 0.00 44.61 1.90
2966 3753 6.483307 CGTCATAATTGGTCTGGTGACAATAT 59.517 38.462 0.00 0.00 44.61 1.28
2967 3754 7.307396 CGTCATAATTGGTCTGGTGACAATATC 60.307 40.741 0.00 0.00 44.61 1.63
2968 3755 6.705825 TCATAATTGGTCTGGTGACAATATCG 59.294 38.462 0.00 0.00 44.61 2.92
2969 3756 3.973206 TTGGTCTGGTGACAATATCGT 57.027 42.857 0.00 0.00 44.61 3.73
2970 3757 3.520290 TGGTCTGGTGACAATATCGTC 57.480 47.619 0.00 0.00 44.61 4.20
2971 3758 3.096852 TGGTCTGGTGACAATATCGTCT 58.903 45.455 0.00 0.00 44.61 4.18
2972 3759 3.119137 TGGTCTGGTGACAATATCGTCTG 60.119 47.826 0.00 0.00 44.61 3.51
2973 3760 3.130516 GGTCTGGTGACAATATCGTCTGA 59.869 47.826 0.00 0.00 44.61 3.27
2974 3761 4.381612 GGTCTGGTGACAATATCGTCTGAA 60.382 45.833 0.00 0.00 44.61 3.02
2975 3762 5.352284 GTCTGGTGACAATATCGTCTGAAT 58.648 41.667 0.00 0.00 42.48 2.57
2979 3766 8.204160 TCTGGTGACAATATCGTCTGAATAAAT 58.796 33.333 0.00 0.00 42.06 1.40
3054 3841 0.580104 GCACGTCAGTTTAACACGCT 59.420 50.000 7.68 0.00 37.02 5.07
3082 3869 3.059603 CGGTTCAAATCCGGACGAT 57.940 52.632 6.12 0.00 43.68 3.73
3096 3883 2.031157 CGGACGATGCCAAGTTCTTTTT 60.031 45.455 0.00 0.00 0.00 1.94
3117 3904 6.732896 TTTTGCTGGGGTTGTTTATTCTTA 57.267 33.333 0.00 0.00 0.00 2.10
3169 3956 7.754069 TTTTTGTCTGCTGAACTTTGTATTG 57.246 32.000 0.00 0.00 0.00 1.90
3170 3957 6.691754 TTTGTCTGCTGAACTTTGTATTGA 57.308 33.333 0.00 0.00 0.00 2.57
3171 3958 5.673337 TGTCTGCTGAACTTTGTATTGAC 57.327 39.130 0.00 0.00 0.00 3.18
3172 3959 5.122519 TGTCTGCTGAACTTTGTATTGACA 58.877 37.500 0.00 0.00 0.00 3.58
3173 3960 5.764686 TGTCTGCTGAACTTTGTATTGACAT 59.235 36.000 0.00 0.00 34.86 3.06
3174 3961 6.262944 TGTCTGCTGAACTTTGTATTGACATT 59.737 34.615 0.00 0.00 34.86 2.71
3175 3962 7.141363 GTCTGCTGAACTTTGTATTGACATTT 58.859 34.615 0.00 0.00 34.86 2.32
3176 3963 7.649306 GTCTGCTGAACTTTGTATTGACATTTT 59.351 33.333 0.00 0.00 34.86 1.82
3177 3964 8.196771 TCTGCTGAACTTTGTATTGACATTTTT 58.803 29.630 0.00 0.00 34.86 1.94
3197 3984 6.594788 TTTTTCCTGCTTGAGCTTGATAAT 57.405 33.333 4.44 0.00 42.66 1.28
3198 3985 5.571784 TTTCCTGCTTGAGCTTGATAATG 57.428 39.130 4.44 0.00 42.66 1.90
3199 3986 3.548770 TCCTGCTTGAGCTTGATAATGG 58.451 45.455 4.44 0.00 42.66 3.16
3200 3987 3.054139 TCCTGCTTGAGCTTGATAATGGT 60.054 43.478 4.44 0.00 42.66 3.55
3201 3988 3.066342 CCTGCTTGAGCTTGATAATGGTG 59.934 47.826 4.44 0.00 42.66 4.17
3202 3989 3.943381 CTGCTTGAGCTTGATAATGGTGA 59.057 43.478 4.44 0.00 42.66 4.02
3203 3990 4.529897 TGCTTGAGCTTGATAATGGTGAT 58.470 39.130 4.44 0.00 42.66 3.06
3204 3991 4.337274 TGCTTGAGCTTGATAATGGTGATG 59.663 41.667 4.44 0.00 42.66 3.07
3205 3992 4.577693 GCTTGAGCTTGATAATGGTGATGA 59.422 41.667 0.00 0.00 38.21 2.92
3206 3993 5.241064 GCTTGAGCTTGATAATGGTGATGAT 59.759 40.000 0.00 0.00 38.21 2.45
3207 3994 6.429078 GCTTGAGCTTGATAATGGTGATGATA 59.571 38.462 0.00 0.00 38.21 2.15
3208 3995 7.361031 GCTTGAGCTTGATAATGGTGATGATAG 60.361 40.741 0.00 0.00 38.21 2.08
3209 3996 7.307131 TGAGCTTGATAATGGTGATGATAGA 57.693 36.000 0.00 0.00 0.00 1.98
3210 3997 7.914859 TGAGCTTGATAATGGTGATGATAGAT 58.085 34.615 0.00 0.00 0.00 1.98
3211 3998 8.380867 TGAGCTTGATAATGGTGATGATAGATT 58.619 33.333 0.00 0.00 0.00 2.40
3212 3999 8.563123 AGCTTGATAATGGTGATGATAGATTG 57.437 34.615 0.00 0.00 0.00 2.67
3213 4000 8.162085 AGCTTGATAATGGTGATGATAGATTGT 58.838 33.333 0.00 0.00 0.00 2.71
3214 4001 8.235226 GCTTGATAATGGTGATGATAGATTGTG 58.765 37.037 0.00 0.00 0.00 3.33
3215 4002 7.677454 TGATAATGGTGATGATAGATTGTGC 57.323 36.000 0.00 0.00 0.00 4.57
3216 4003 7.225725 TGATAATGGTGATGATAGATTGTGCA 58.774 34.615 0.00 0.00 0.00 4.57
3217 4004 7.886446 TGATAATGGTGATGATAGATTGTGCAT 59.114 33.333 0.00 0.00 0.00 3.96
3218 4005 6.971726 AATGGTGATGATAGATTGTGCATT 57.028 33.333 0.00 0.00 0.00 3.56
3219 4006 6.971726 ATGGTGATGATAGATTGTGCATTT 57.028 33.333 0.00 0.00 0.00 2.32
3220 4007 6.139048 TGGTGATGATAGATTGTGCATTTG 57.861 37.500 0.00 0.00 0.00 2.32
3221 4008 5.653330 TGGTGATGATAGATTGTGCATTTGT 59.347 36.000 0.00 0.00 0.00 2.83
3222 4009 6.827762 TGGTGATGATAGATTGTGCATTTGTA 59.172 34.615 0.00 0.00 0.00 2.41
3223 4010 7.503230 TGGTGATGATAGATTGTGCATTTGTAT 59.497 33.333 0.00 0.00 0.00 2.29
3224 4011 9.002600 GGTGATGATAGATTGTGCATTTGTATA 57.997 33.333 0.00 0.00 0.00 1.47
3232 4019 7.500141 AGATTGTGCATTTGTATATTTTCCCC 58.500 34.615 0.00 0.00 0.00 4.81
3233 4020 6.611613 TTGTGCATTTGTATATTTTCCCCA 57.388 33.333 0.00 0.00 0.00 4.96
3234 4021 5.971763 TGTGCATTTGTATATTTTCCCCAC 58.028 37.500 0.00 0.00 0.00 4.61
3235 4022 5.481824 TGTGCATTTGTATATTTTCCCCACA 59.518 36.000 0.00 0.00 0.00 4.17
3236 4023 6.014242 TGTGCATTTGTATATTTTCCCCACAA 60.014 34.615 0.00 0.00 0.00 3.33
3237 4024 7.047271 GTGCATTTGTATATTTTCCCCACAAT 58.953 34.615 0.00 0.00 0.00 2.71
3238 4025 7.011295 GTGCATTTGTATATTTTCCCCACAATG 59.989 37.037 0.00 0.00 0.00 2.82
3239 4026 7.093156 TGCATTTGTATATTTTCCCCACAATGA 60.093 33.333 0.00 0.00 0.00 2.57
3240 4027 7.768120 GCATTTGTATATTTTCCCCACAATGAA 59.232 33.333 0.00 0.00 0.00 2.57
3241 4028 9.316730 CATTTGTATATTTTCCCCACAATGAAG 57.683 33.333 0.00 0.00 0.00 3.02
3242 4029 8.429237 TTTGTATATTTTCCCCACAATGAAGT 57.571 30.769 0.00 0.00 0.00 3.01
3243 4030 7.403312 TGTATATTTTCCCCACAATGAAGTG 57.597 36.000 0.00 0.00 39.21 3.16
3244 4031 3.683365 ATTTTCCCCACAATGAAGTGC 57.317 42.857 0.00 0.00 38.18 4.40
3245 4032 2.079170 TTTCCCCACAATGAAGTGCA 57.921 45.000 0.00 0.00 38.18 4.57
3246 4033 2.307496 TTCCCCACAATGAAGTGCAT 57.693 45.000 0.00 0.00 38.18 3.96
3247 4034 3.448093 TTCCCCACAATGAAGTGCATA 57.552 42.857 0.00 0.00 38.18 3.14
3248 4035 3.003394 TCCCCACAATGAAGTGCATAG 57.997 47.619 0.00 0.00 38.18 2.23
3249 4036 2.026641 CCCCACAATGAAGTGCATAGG 58.973 52.381 0.00 0.00 38.18 2.57
3250 4037 2.621407 CCCCACAATGAAGTGCATAGGT 60.621 50.000 0.00 0.00 38.18 3.08
3251 4038 3.091545 CCCACAATGAAGTGCATAGGTT 58.908 45.455 0.00 0.00 38.18 3.50
3252 4039 3.511146 CCCACAATGAAGTGCATAGGTTT 59.489 43.478 0.00 0.00 38.18 3.27
3253 4040 4.704540 CCCACAATGAAGTGCATAGGTTTA 59.295 41.667 0.00 0.00 38.18 2.01
3254 4041 5.360714 CCCACAATGAAGTGCATAGGTTTAT 59.639 40.000 0.00 0.00 38.18 1.40
3255 4042 6.545666 CCCACAATGAAGTGCATAGGTTTATA 59.454 38.462 0.00 0.00 38.18 0.98
3256 4043 7.255242 CCCACAATGAAGTGCATAGGTTTATAG 60.255 40.741 0.00 0.00 38.18 1.31
3257 4044 7.255242 CCACAATGAAGTGCATAGGTTTATAGG 60.255 40.741 0.00 0.00 38.18 2.57
3258 4045 7.498900 CACAATGAAGTGCATAGGTTTATAGGA 59.501 37.037 0.00 0.00 35.78 2.94
3259 4046 8.220559 ACAATGAAGTGCATAGGTTTATAGGAT 58.779 33.333 0.00 0.00 35.78 3.24
3260 4047 9.725019 CAATGAAGTGCATAGGTTTATAGGATA 57.275 33.333 0.00 0.00 35.78 2.59
3261 4048 9.950496 AATGAAGTGCATAGGTTTATAGGATAG 57.050 33.333 0.00 0.00 35.78 2.08
3262 4049 8.721133 TGAAGTGCATAGGTTTATAGGATAGA 57.279 34.615 0.00 0.00 0.00 1.98
3263 4050 9.326489 TGAAGTGCATAGGTTTATAGGATAGAT 57.674 33.333 0.00 0.00 0.00 1.98
3266 4053 8.763601 AGTGCATAGGTTTATAGGATAGATTCC 58.236 37.037 0.00 0.00 45.85 3.01
3267 4054 7.988028 GTGCATAGGTTTATAGGATAGATTCCC 59.012 40.741 0.00 0.00 46.81 3.97
3268 4055 7.147724 TGCATAGGTTTATAGGATAGATTCCCG 60.148 40.741 0.00 0.00 46.81 5.14
3269 4056 5.678955 AGGTTTATAGGATAGATTCCCGC 57.321 43.478 0.00 0.00 46.81 6.13
3270 4057 5.091552 AGGTTTATAGGATAGATTCCCGCA 58.908 41.667 0.00 0.00 46.81 5.69
3271 4058 5.546499 AGGTTTATAGGATAGATTCCCGCAA 59.454 40.000 0.00 0.00 46.81 4.85
3272 4059 6.043938 AGGTTTATAGGATAGATTCCCGCAAA 59.956 38.462 0.00 0.00 46.81 3.68
3273 4060 6.713450 GGTTTATAGGATAGATTCCCGCAAAA 59.287 38.462 0.00 0.00 46.81 2.44
3274 4061 7.229907 GGTTTATAGGATAGATTCCCGCAAAAA 59.770 37.037 0.00 0.00 46.81 1.94
3300 4087 8.893563 AAGGGATAGATGTTGGAAATAAAACA 57.106 30.769 0.00 0.00 40.36 2.83
3301 4088 8.893563 AGGGATAGATGTTGGAAATAAAACAA 57.106 30.769 0.00 0.00 39.57 2.83
3302 4089 8.749354 AGGGATAGATGTTGGAAATAAAACAAC 58.251 33.333 0.00 0.00 43.47 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.804933 GTCGGAGTATTGACGGTGGC 60.805 60.000 0.00 0.00 0.00 5.01
41 42 1.803334 AAACATTTCCGCTCACGCTA 58.197 45.000 0.00 0.00 38.22 4.26
48 49 1.812571 CTGGCACTAAACATTTCCGCT 59.187 47.619 0.00 0.00 0.00 5.52
49 50 1.539827 ACTGGCACTAAACATTTCCGC 59.460 47.619 0.00 0.00 0.00 5.54
50 51 2.552315 ACACTGGCACTAAACATTTCCG 59.448 45.455 0.00 0.00 0.00 4.30
59 60 0.250727 GCTTGGGACACTGGCACTAA 60.251 55.000 0.00 0.00 39.29 2.24
79 80 3.384146 TGTGATGTGTGCTTGTTTTGGAT 59.616 39.130 0.00 0.00 0.00 3.41
83 84 4.175516 CAACTGTGATGTGTGCTTGTTTT 58.824 39.130 0.00 0.00 0.00 2.43
90 91 0.662374 GCAGCAACTGTGATGTGTGC 60.662 55.000 0.00 0.00 43.30 4.57
95 96 2.693762 CCCGGCAGCAACTGTGATG 61.694 63.158 0.00 0.00 44.25 3.07
152 156 5.637810 GCAAGCGGCTATATTATGTGTAGAA 59.362 40.000 1.35 0.00 40.25 2.10
170 174 2.047465 AGACAGCCAGAGCAAGCG 60.047 61.111 0.00 0.00 43.56 4.68
193 199 6.309712 TCTTCAAGAAACAATCTTCAGCAG 57.690 37.500 0.00 0.00 45.42 4.24
201 207 8.137437 TCAGGAAACAATCTTCAAGAAACAATC 58.863 33.333 0.00 0.00 0.00 2.67
202 208 8.010733 TCAGGAAACAATCTTCAAGAAACAAT 57.989 30.769 0.00 0.00 0.00 2.71
204 210 7.587037 ATCAGGAAACAATCTTCAAGAAACA 57.413 32.000 0.00 0.00 0.00 2.83
207 213 9.300681 ACATTATCAGGAAACAATCTTCAAGAA 57.699 29.630 0.00 0.00 0.00 2.52
209 215 8.517878 ACACATTATCAGGAAACAATCTTCAAG 58.482 33.333 0.00 0.00 0.00 3.02
210 216 8.408043 ACACATTATCAGGAAACAATCTTCAA 57.592 30.769 0.00 0.00 0.00 2.69
260 288 7.120579 TCACAAGTCACAACCCACATTATATTC 59.879 37.037 0.00 0.00 0.00 1.75
268 296 2.727123 ATCACAAGTCACAACCCACA 57.273 45.000 0.00 0.00 0.00 4.17
483 511 4.280019 AACGGGGGCAGGTTGTCC 62.280 66.667 0.00 0.00 42.67 4.02
498 526 6.759356 TGCATGAATCATTCAATGAATGGAAC 59.241 34.615 29.06 20.94 46.43 3.62
513 541 5.334802 CGTACTCCAAAGTTTGCATGAATCA 60.335 40.000 10.25 0.00 36.92 2.57
519 547 3.749609 GGTACGTACTCCAAAGTTTGCAT 59.250 43.478 24.07 0.39 36.92 3.96
560 588 6.631971 TGAAATGCTGAATCTACACAAACA 57.368 33.333 0.00 0.00 0.00 2.83
608 636 9.327628 TCAATTTTCTCATTTCTTGCATTGAAA 57.672 25.926 14.83 14.83 37.74 2.69
609 637 8.890124 TCAATTTTCTCATTTCTTGCATTGAA 57.110 26.923 0.00 0.00 0.00 2.69
614 642 9.938670 CAATTTTCAATTTTCTCATTTCTTGCA 57.061 25.926 0.00 0.00 0.00 4.08
630 658 9.496873 TGAGAGAATGCATTTTCAATTTTCAAT 57.503 25.926 26.48 7.35 0.00 2.57
631 659 8.890124 TGAGAGAATGCATTTTCAATTTTCAA 57.110 26.923 26.48 7.90 0.00 2.69
632 660 9.496873 AATGAGAGAATGCATTTTCAATTTTCA 57.503 25.926 26.48 20.98 31.02 2.69
633 661 9.968743 GAATGAGAGAATGCATTTTCAATTTTC 57.031 29.630 26.48 19.19 35.05 2.29
634 662 8.943002 GGAATGAGAGAATGCATTTTCAATTTT 58.057 29.630 26.48 16.01 35.05 1.82
635 663 8.098286 TGGAATGAGAGAATGCATTTTCAATTT 58.902 29.630 26.48 17.41 35.05 1.82
636 664 7.617225 TGGAATGAGAGAATGCATTTTCAATT 58.383 30.769 26.48 23.47 35.05 2.32
637 665 7.093465 ACTGGAATGAGAGAATGCATTTTCAAT 60.093 33.333 26.48 18.13 35.05 2.57
660 688 6.014499 TGAGAGAAAGTAGTTTAGGGGAACTG 60.014 42.308 0.00 0.00 39.99 3.16
662 690 6.356186 TGAGAGAAAGTAGTTTAGGGGAAC 57.644 41.667 0.00 0.00 0.00 3.62
665 693 6.947464 TGAATGAGAGAAAGTAGTTTAGGGG 58.053 40.000 0.00 0.00 0.00 4.79
666 694 8.848474 TTTGAATGAGAGAAAGTAGTTTAGGG 57.152 34.615 0.00 0.00 0.00 3.53
672 700 9.950496 ACATGTATTTGAATGAGAGAAAGTAGT 57.050 29.630 0.00 0.00 0.00 2.73
693 753 9.107177 GAGAAGATCAAATGACTGATTACATGT 57.893 33.333 2.69 2.69 36.15 3.21
697 757 8.939201 TGAGAGAAGATCAAATGACTGATTAC 57.061 34.615 0.00 0.00 36.15 1.89
726 786 9.755064 CGTCTTCGTTTAAATGACTGATTTAAT 57.245 29.630 9.67 0.00 43.14 1.40
727 787 7.742963 GCGTCTTCGTTTAAATGACTGATTTAA 59.257 33.333 9.67 0.00 39.94 1.52
728 788 7.231607 GCGTCTTCGTTTAAATGACTGATTTA 58.768 34.615 9.67 0.00 36.22 1.40
729 789 6.077838 GCGTCTTCGTTTAAATGACTGATTT 58.922 36.000 9.67 0.00 37.43 2.17
730 790 5.390567 GGCGTCTTCGTTTAAATGACTGATT 60.391 40.000 9.67 0.00 39.49 2.57
731 791 4.092968 GGCGTCTTCGTTTAAATGACTGAT 59.907 41.667 9.67 0.00 39.49 2.90
732 792 3.430895 GGCGTCTTCGTTTAAATGACTGA 59.569 43.478 9.67 8.52 39.49 3.41
733 793 3.424433 GGGCGTCTTCGTTTAAATGACTG 60.424 47.826 9.67 6.47 39.49 3.51
734 794 2.740447 GGGCGTCTTCGTTTAAATGACT 59.260 45.455 9.67 0.00 39.49 3.41
735 795 2.481185 TGGGCGTCTTCGTTTAAATGAC 59.519 45.455 9.67 6.58 39.49 3.06
736 796 2.768698 TGGGCGTCTTCGTTTAAATGA 58.231 42.857 6.00 6.00 39.49 2.57
737 797 3.757745 ATGGGCGTCTTCGTTTAAATG 57.242 42.857 0.63 0.63 39.49 2.32
738 798 3.504520 ACAATGGGCGTCTTCGTTTAAAT 59.495 39.130 0.00 0.00 39.49 1.40
739 799 2.879646 ACAATGGGCGTCTTCGTTTAAA 59.120 40.909 0.00 0.00 39.49 1.52
740 800 2.496111 ACAATGGGCGTCTTCGTTTAA 58.504 42.857 0.00 0.00 39.49 1.52
741 801 2.172851 ACAATGGGCGTCTTCGTTTA 57.827 45.000 0.00 0.00 39.49 2.01
742 802 1.001815 CAACAATGGGCGTCTTCGTTT 60.002 47.619 0.00 0.00 39.49 3.60
743 803 0.591170 CAACAATGGGCGTCTTCGTT 59.409 50.000 0.00 0.00 39.49 3.85
744 804 0.534203 ACAACAATGGGCGTCTTCGT 60.534 50.000 0.00 0.00 39.49 3.85
745 805 0.165944 GACAACAATGGGCGTCTTCG 59.834 55.000 0.00 0.00 40.37 3.79
746 806 1.234821 TGACAACAATGGGCGTCTTC 58.765 50.000 0.00 0.00 0.00 2.87
747 807 1.909700 ATGACAACAATGGGCGTCTT 58.090 45.000 0.00 0.00 0.00 3.01
748 808 1.909700 AATGACAACAATGGGCGTCT 58.090 45.000 0.00 0.00 0.00 4.18
749 809 2.595386 GAAATGACAACAATGGGCGTC 58.405 47.619 0.00 0.00 0.00 5.19
750 810 1.272212 GGAAATGACAACAATGGGCGT 59.728 47.619 0.00 0.00 0.00 5.68
801 861 4.163078 TGTTGGGGTTCAAATTCAATGTGT 59.837 37.500 0.00 0.00 37.08 3.72
803 863 4.743348 GCTGTTGGGGTTCAAATTCAATGT 60.743 41.667 0.00 0.00 37.08 2.71
826 891 2.282180 CGAAGGGTGGGTGTTGGG 60.282 66.667 0.00 0.00 0.00 4.12
854 919 2.672996 ATGCGTTGGTGACTGGGC 60.673 61.111 0.00 0.00 0.00 5.36
859 924 4.759096 GGCGCATGCGTTGGTGAC 62.759 66.667 37.54 20.72 44.10 3.67
897 962 1.136252 CGAGTGTGAAATGTGAAGGCG 60.136 52.381 0.00 0.00 0.00 5.52
909 974 2.005370 AAGTAGGGGTTCGAGTGTGA 57.995 50.000 0.00 0.00 0.00 3.58
917 982 3.073503 AGGTGGTTGTTAAGTAGGGGTTC 59.926 47.826 0.00 0.00 0.00 3.62
932 997 0.252197 GCGGGTAGATGAAGGTGGTT 59.748 55.000 0.00 0.00 0.00 3.67
934 999 1.227263 CGCGGGTAGATGAAGGTGG 60.227 63.158 0.00 0.00 0.00 4.61
935 1000 0.108329 AACGCGGGTAGATGAAGGTG 60.108 55.000 12.47 0.00 0.00 4.00
942 1007 1.134560 GAAGTCTGAACGCGGGTAGAT 59.865 52.381 12.47 0.00 0.00 1.98
950 1015 0.606604 TGGGTAGGAAGTCTGAACGC 59.393 55.000 0.00 0.00 0.00 4.84
953 1018 1.623811 GCTGTGGGTAGGAAGTCTGAA 59.376 52.381 0.00 0.00 0.00 3.02
959 1024 0.036732 TTGCTGCTGTGGGTAGGAAG 59.963 55.000 0.00 0.00 33.72 3.46
977 1042 2.443255 AGTGTGTGGGAGTTGGATTCTT 59.557 45.455 0.00 0.00 0.00 2.52
980 1045 1.774254 TGAGTGTGTGGGAGTTGGATT 59.226 47.619 0.00 0.00 0.00 3.01
981 1046 1.434188 TGAGTGTGTGGGAGTTGGAT 58.566 50.000 0.00 0.00 0.00 3.41
982 1047 1.072173 CATGAGTGTGTGGGAGTTGGA 59.928 52.381 0.00 0.00 0.00 3.53
983 1048 1.202806 ACATGAGTGTGTGGGAGTTGG 60.203 52.381 0.00 0.00 37.14 3.77
984 1049 2.146342 GACATGAGTGTGTGGGAGTTG 58.854 52.381 0.00 0.00 39.09 3.16
985 1050 1.768275 TGACATGAGTGTGTGGGAGTT 59.232 47.619 0.00 0.00 39.09 3.01
986 1051 1.423584 TGACATGAGTGTGTGGGAGT 58.576 50.000 0.00 0.00 39.09 3.85
987 1052 2.549064 TTGACATGAGTGTGTGGGAG 57.451 50.000 0.00 0.00 39.09 4.30
988 1053 2.571212 GTTTGACATGAGTGTGTGGGA 58.429 47.619 0.00 0.00 39.09 4.37
989 1054 1.608590 GGTTTGACATGAGTGTGTGGG 59.391 52.381 0.00 0.00 39.09 4.61
990 1055 2.549754 GAGGTTTGACATGAGTGTGTGG 59.450 50.000 0.00 0.00 39.09 4.17
991 1056 3.470709 AGAGGTTTGACATGAGTGTGTG 58.529 45.455 0.00 0.00 39.09 3.82
992 1057 3.134623 TGAGAGGTTTGACATGAGTGTGT 59.865 43.478 0.00 0.00 39.09 3.72
993 1058 3.732212 TGAGAGGTTTGACATGAGTGTG 58.268 45.455 0.00 0.00 39.09 3.82
994 1059 4.564406 GGATGAGAGGTTTGACATGAGTGT 60.564 45.833 0.00 0.00 42.49 3.55
995 1060 3.937706 GGATGAGAGGTTTGACATGAGTG 59.062 47.826 0.00 0.00 0.00 3.51
996 1061 3.584406 TGGATGAGAGGTTTGACATGAGT 59.416 43.478 0.00 0.00 0.00 3.41
997 1062 4.212143 TGGATGAGAGGTTTGACATGAG 57.788 45.455 0.00 0.00 0.00 2.90
998 1063 4.225717 TGATGGATGAGAGGTTTGACATGA 59.774 41.667 0.00 0.00 0.00 3.07
999 1064 4.520179 TGATGGATGAGAGGTTTGACATG 58.480 43.478 0.00 0.00 0.00 3.21
1000 1065 4.849813 TGATGGATGAGAGGTTTGACAT 57.150 40.909 0.00 0.00 0.00 3.06
1001 1066 4.582869 CTTGATGGATGAGAGGTTTGACA 58.417 43.478 0.00 0.00 0.00 3.58
1002 1067 3.376546 GCTTGATGGATGAGAGGTTTGAC 59.623 47.826 0.00 0.00 0.00 3.18
1003 1068 3.614092 GCTTGATGGATGAGAGGTTTGA 58.386 45.455 0.00 0.00 0.00 2.69
1004 1069 2.686915 GGCTTGATGGATGAGAGGTTTG 59.313 50.000 0.00 0.00 0.00 2.93
1312 1377 1.878948 GCCGTGGGTAGTAGCAACAAA 60.879 52.381 7.62 0.00 0.00 2.83
1314 1379 1.294138 GCCGTGGGTAGTAGCAACA 59.706 57.895 7.62 0.00 0.00 3.33
1380 1445 2.359975 CCGGTGAAGGGGTTGAGC 60.360 66.667 0.00 0.00 0.00 4.26
1475 1540 0.319040 GTCTGCAGAAGTGAGCGACA 60.319 55.000 20.19 0.00 35.72 4.35
1483 1548 0.318762 GAACGGAGGTCTGCAGAAGT 59.681 55.000 20.19 8.57 0.00 3.01
1491 1556 0.471211 TGGGTGAAGAACGGAGGTCT 60.471 55.000 0.00 0.00 0.00 3.85
1527 1604 2.038387 ATTGACCGCAACCACTATCC 57.962 50.000 0.00 0.00 36.72 2.59
1541 1621 1.945394 CAGGAGCAGCCATGTATTGAC 59.055 52.381 0.00 0.00 40.02 3.18
1542 1622 1.839354 TCAGGAGCAGCCATGTATTGA 59.161 47.619 0.00 0.00 40.02 2.57
1556 1636 1.202582 AGAAATCGTCGGTGTCAGGAG 59.797 52.381 0.00 0.00 0.00 3.69
1565 1645 2.644555 ATCCCGGCAGAAATCGTCGG 62.645 60.000 0.00 10.04 40.32 4.79
1576 1656 1.227102 CTCCATCCAAATCCCGGCA 59.773 57.895 0.00 0.00 0.00 5.69
1580 1660 4.720775 ATCTCTTCTCCATCCAAATCCC 57.279 45.455 0.00 0.00 0.00 3.85
1592 1672 6.073112 GCTCATGGCTTCAATAATCTCTTCTC 60.073 42.308 0.00 0.00 38.06 2.87
1610 1690 4.261238 GCATCAGAAAGAATGAGCTCATGG 60.261 45.833 29.34 12.82 36.56 3.66
1612 1692 3.884091 GGCATCAGAAAGAATGAGCTCAT 59.116 43.478 23.75 23.75 38.41 2.90
1616 1696 2.012673 ACGGCATCAGAAAGAATGAGC 58.987 47.619 0.00 0.00 0.00 4.26
1617 1697 4.409570 CAAACGGCATCAGAAAGAATGAG 58.590 43.478 0.00 0.00 0.00 2.90
1619 1699 2.919229 GCAAACGGCATCAGAAAGAATG 59.081 45.455 0.00 0.00 43.97 2.67
1624 1704 1.255882 ATGGCAAACGGCATCAGAAA 58.744 45.000 0.00 0.00 45.95 2.52
1668 1748 2.780924 ACCCTTCCCTGCCAACCA 60.781 61.111 0.00 0.00 0.00 3.67
1712 1792 3.193263 CTCATCACACGGAAGATCTTGG 58.807 50.000 14.00 7.13 0.00 3.61
1726 1806 0.107312 ATGTGGAGCAGCCTCATCAC 60.107 55.000 7.20 0.00 45.33 3.06
1733 1813 0.106819 AGGATCAATGTGGAGCAGCC 60.107 55.000 0.00 0.00 37.10 4.85
1757 1837 7.759433 CCATAAAAACTTTGTCCACATACATCC 59.241 37.037 0.00 0.00 0.00 3.51
1764 1844 4.290942 ACCCCATAAAAACTTTGTCCACA 58.709 39.130 0.00 0.00 0.00 4.17
1766 1846 5.675538 CAAACCCCATAAAAACTTTGTCCA 58.324 37.500 0.00 0.00 0.00 4.02
1767 1847 4.513692 GCAAACCCCATAAAAACTTTGTCC 59.486 41.667 0.00 0.00 0.00 4.02
1774 1854 4.173256 CGATCAGCAAACCCCATAAAAAC 58.827 43.478 0.00 0.00 0.00 2.43
1775 1855 3.829601 ACGATCAGCAAACCCCATAAAAA 59.170 39.130 0.00 0.00 0.00 1.94
1822 1908 3.415212 CAGCAGATTCAACCAGGAAGAA 58.585 45.455 0.00 0.00 0.00 2.52
1824 1910 2.089980 CCAGCAGATTCAACCAGGAAG 58.910 52.381 0.00 0.00 0.00 3.46
1833 1919 3.014623 CAGCAATTCTCCAGCAGATTCA 58.985 45.455 0.00 0.00 0.00 2.57
1842 1928 4.226384 TCTCTATAGCCAGCAATTCTCCA 58.774 43.478 0.00 0.00 0.00 3.86
1849 1935 2.738643 GCACGTTCTCTATAGCCAGCAA 60.739 50.000 0.00 0.00 0.00 3.91
1860 1946 0.671781 GATGTGGCTGCACGTTCTCT 60.672 55.000 0.50 0.00 0.00 3.10
1862 1948 0.952497 CAGATGTGGCTGCACGTTCT 60.952 55.000 0.50 2.52 0.00 3.01
1863 1949 0.950555 TCAGATGTGGCTGCACGTTC 60.951 55.000 0.50 0.36 35.86 3.95
1885 1971 2.158623 TGTCAGTGTCCAGCCTGAAAAT 60.159 45.455 0.00 0.00 39.29 1.82
1917 2009 1.227205 GATGCTCTCCACTGGCTCG 60.227 63.158 0.00 0.00 0.00 5.03
1923 2015 2.898738 CTGCCGATGCTCTCCACT 59.101 61.111 0.00 0.00 38.71 4.00
1939 2031 1.522355 CGATGAAGATGGCACGGCT 60.522 57.895 0.00 0.00 0.00 5.52
1962 2054 1.167781 TGACAGACACGCACCTACGA 61.168 55.000 0.00 0.00 36.70 3.43
1972 2064 0.529773 TTGTCCGCACTGACAGACAC 60.530 55.000 10.08 0.00 45.37 3.67
2005 2097 4.720649 TGTAGTAGATGCAGTTGGAGAC 57.279 45.455 0.00 0.00 0.00 3.36
2008 2100 5.187772 ACTTGATGTAGTAGATGCAGTTGGA 59.812 40.000 0.00 0.00 0.00 3.53
2026 2118 2.738846 GTGACGAATCTGTGCACTTGAT 59.261 45.455 19.41 17.60 0.00 2.57
2033 2125 2.795121 GTCATGTGACGAATCTGTGC 57.205 50.000 0.00 0.00 35.12 4.57
2079 2173 4.745172 GCTTCACAGACCCTCTCTTCTTTT 60.745 45.833 0.00 0.00 0.00 2.27
2108 2202 1.231963 GATGGTGGGGGTTAAGGGAT 58.768 55.000 0.00 0.00 0.00 3.85
2109 2203 0.178828 TGATGGTGGGGGTTAAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
2110 2204 0.933700 ATGATGGTGGGGGTTAAGGG 59.066 55.000 0.00 0.00 0.00 3.95
2111 2205 1.568597 TGATGATGGTGGGGGTTAAGG 59.431 52.381 0.00 0.00 0.00 2.69
2112 2206 3.225104 CATGATGATGGTGGGGGTTAAG 58.775 50.000 0.00 0.00 0.00 1.85
2113 2207 2.689421 GCATGATGATGGTGGGGGTTAA 60.689 50.000 0.00 0.00 0.00 2.01
2114 2208 1.133513 GCATGATGATGGTGGGGGTTA 60.134 52.381 0.00 0.00 0.00 2.85
2115 2209 0.397535 GCATGATGATGGTGGGGGTT 60.398 55.000 0.00 0.00 0.00 4.11
2116 2210 1.231068 GCATGATGATGGTGGGGGT 59.769 57.895 0.00 0.00 0.00 4.95
2117 2211 0.397394 TTGCATGATGATGGTGGGGG 60.397 55.000 0.00 0.00 0.00 5.40
2118 2212 0.748450 GTTGCATGATGATGGTGGGG 59.252 55.000 0.00 0.00 0.00 4.96
2119 2213 0.748450 GGTTGCATGATGATGGTGGG 59.252 55.000 0.00 0.00 0.00 4.61
2120 2214 0.748450 GGGTTGCATGATGATGGTGG 59.252 55.000 0.00 0.00 0.00 4.61
2121 2215 1.771565 AGGGTTGCATGATGATGGTG 58.228 50.000 0.00 0.00 0.00 4.17
2122 2216 2.024655 AGAAGGGTTGCATGATGATGGT 60.025 45.455 0.00 0.00 0.00 3.55
2123 2217 2.662866 AGAAGGGTTGCATGATGATGG 58.337 47.619 0.00 0.00 0.00 3.51
2124 2218 4.641541 TGTAAGAAGGGTTGCATGATGATG 59.358 41.667 0.00 0.00 0.00 3.07
2125 2219 4.641989 GTGTAAGAAGGGTTGCATGATGAT 59.358 41.667 0.00 0.00 0.00 2.45
2126 2220 4.009675 GTGTAAGAAGGGTTGCATGATGA 58.990 43.478 0.00 0.00 0.00 2.92
2127 2221 3.129287 GGTGTAAGAAGGGTTGCATGATG 59.871 47.826 0.00 0.00 0.00 3.07
2128 2222 3.356290 GGTGTAAGAAGGGTTGCATGAT 58.644 45.455 0.00 0.00 0.00 2.45
2129 2223 2.554344 GGGTGTAAGAAGGGTTGCATGA 60.554 50.000 0.00 0.00 0.00 3.07
2136 2230 1.916181 CTGATGGGGTGTAAGAAGGGT 59.084 52.381 0.00 0.00 0.00 4.34
2137 2231 1.212935 CCTGATGGGGTGTAAGAAGGG 59.787 57.143 0.00 0.00 0.00 3.95
2146 2240 2.362889 GGTTGGCCTGATGGGGTG 60.363 66.667 3.32 0.00 35.12 4.61
2159 2259 1.413118 AGGAGGTTTGGCAAAGGTTG 58.587 50.000 13.94 0.00 0.00 3.77
2161 2261 2.039418 GAAAGGAGGTTTGGCAAAGGT 58.961 47.619 13.94 3.04 0.00 3.50
2164 2264 1.760029 GGTGAAAGGAGGTTTGGCAAA 59.240 47.619 8.93 8.93 0.00 3.68
2169 2269 2.821969 CAGGATGGTGAAAGGAGGTTTG 59.178 50.000 0.00 0.00 0.00 2.93
2190 2290 1.326213 TGTAGCTGGAGAGGAGCTGC 61.326 60.000 0.00 0.00 46.44 5.25
2202 2302 1.356527 GGGCGTTTACGGTGTAGCTG 61.357 60.000 0.00 0.00 40.23 4.24
2212 2312 0.108041 TGAGATTCCCGGGCGTTTAC 60.108 55.000 18.49 6.03 0.00 2.01
2218 2318 1.821332 CAAGCTGAGATTCCCGGGC 60.821 63.158 18.49 0.83 0.00 6.13
2236 2336 5.181433 GGTCCTGTACAAAAGTTTCCATCTC 59.819 44.000 0.00 0.00 0.00 2.75
2237 2337 5.070685 GGTCCTGTACAAAAGTTTCCATCT 58.929 41.667 0.00 0.00 0.00 2.90
2239 2339 5.061721 AGGTCCTGTACAAAAGTTTCCAT 57.938 39.130 0.00 0.00 0.00 3.41
2245 2345 4.412528 AGGAAGAAGGTCCTGTACAAAAGT 59.587 41.667 0.00 0.00 46.75 2.66
2246 2346 4.974399 AGGAAGAAGGTCCTGTACAAAAG 58.026 43.478 0.00 0.00 46.75 2.27
2269 2369 2.664436 CGTCGTCCGGAAAAGCACC 61.664 63.158 5.23 0.00 0.00 5.01
2270 2370 2.851104 CGTCGTCCGGAAAAGCAC 59.149 61.111 5.23 0.00 0.00 4.40
2281 2381 2.342910 TCAAAGTAAGAGCCGTCGTC 57.657 50.000 0.00 0.00 0.00 4.20
2282 2382 2.230508 TCATCAAAGTAAGAGCCGTCGT 59.769 45.455 0.00 0.00 0.00 4.34
2285 2385 4.002906 TGTTCATCAAAGTAAGAGCCGT 57.997 40.909 0.00 0.00 0.00 5.68
2287 2387 5.645497 AGTCATGTTCATCAAAGTAAGAGCC 59.355 40.000 0.00 0.00 0.00 4.70
2295 2395 8.724229 TCAATACTTCAGTCATGTTCATCAAAG 58.276 33.333 0.00 0.00 0.00 2.77
2297 2397 8.671028 CATCAATACTTCAGTCATGTTCATCAA 58.329 33.333 0.00 0.00 0.00 2.57
2302 2402 8.671921 ACATTCATCAATACTTCAGTCATGTTC 58.328 33.333 0.00 0.00 0.00 3.18
2305 2405 8.205131 TGACATTCATCAATACTTCAGTCATG 57.795 34.615 0.00 0.00 0.00 3.07
2331 2440 2.027385 TCGCTCAGCAGAGTACATCAT 58.973 47.619 8.03 0.00 44.00 2.45
2338 2447 2.580962 TCTATCATCGCTCAGCAGAGT 58.419 47.619 8.03 0.00 44.00 3.24
2342 2451 2.036862 AGCAATCTATCATCGCTCAGCA 59.963 45.455 0.00 0.00 0.00 4.41
2349 2458 6.870439 TCCTGATAACAAGCAATCTATCATCG 59.130 38.462 0.00 0.00 31.99 3.84
2356 2465 7.951347 ATTTCTTCCTGATAACAAGCAATCT 57.049 32.000 0.00 0.00 0.00 2.40
2360 2469 5.243507 TGCAATTTCTTCCTGATAACAAGCA 59.756 36.000 0.00 0.00 0.00 3.91
2361 2470 5.713025 TGCAATTTCTTCCTGATAACAAGC 58.287 37.500 0.00 0.00 0.00 4.01
2386 2495 0.316032 GACGACCGACTCGAGCATAC 60.316 60.000 13.61 0.84 46.14 2.39
2388 2497 1.306642 AAGACGACCGACTCGAGCAT 61.307 55.000 13.61 0.00 46.14 3.79
2391 2500 0.797542 AAGAAGACGACCGACTCGAG 59.202 55.000 11.84 11.84 46.14 4.04
2399 2508 1.604278 AGCAAGCAAAAGAAGACGACC 59.396 47.619 0.00 0.00 0.00 4.79
2400 2509 3.340337 AAGCAAGCAAAAGAAGACGAC 57.660 42.857 0.00 0.00 0.00 4.34
2401 2510 3.128589 ACAAAGCAAGCAAAAGAAGACGA 59.871 39.130 0.00 0.00 0.00 4.20
2407 2516 2.106566 TCCCACAAAGCAAGCAAAAGA 58.893 42.857 0.00 0.00 0.00 2.52
2414 2523 5.352569 CACTAGATAGTTCCCACAAAGCAAG 59.647 44.000 0.00 0.00 33.46 4.01
2426 2535 7.884816 TTAACACTGCAACACTAGATAGTTC 57.115 36.000 0.00 0.00 33.46 3.01
2432 2541 7.282224 AGTTGAAATTAACACTGCAACACTAGA 59.718 33.333 0.00 0.00 38.37 2.43
2439 2548 9.029243 CATAACAAGTTGAAATTAACACTGCAA 57.971 29.630 10.54 0.00 33.02 4.08
2442 2551 8.479280 GTGCATAACAAGTTGAAATTAACACTG 58.521 33.333 10.54 0.00 33.02 3.66
2443 2552 7.651704 GGTGCATAACAAGTTGAAATTAACACT 59.348 33.333 10.54 0.00 33.02 3.55
2456 2565 9.726438 GAAGGAATATATAGGTGCATAACAAGT 57.274 33.333 0.00 0.00 0.00 3.16
2475 2584 9.440761 AGGTAGTACATAAGAAGATGAAGGAAT 57.559 33.333 2.06 0.00 0.00 3.01
2495 2604 9.418839 ACTCTTATATTTCTTTACGGAGGTAGT 57.581 33.333 0.00 0.00 0.00 2.73
2496 2605 9.680315 CACTCTTATATTTCTTTACGGAGGTAG 57.320 37.037 0.00 0.00 0.00 3.18
2497 2606 9.193806 ACACTCTTATATTTCTTTACGGAGGTA 57.806 33.333 0.00 0.00 0.00 3.08
2498 2607 8.075761 ACACTCTTATATTTCTTTACGGAGGT 57.924 34.615 0.00 0.00 0.00 3.85
2499 2608 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
2527 2636 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
2528 2637 9.733219 GAGCGTTTAGATTACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.81 3.06
2529 2638 8.954350 AGAGCGTTTAGATTACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.81 3.41
2530 2639 9.570488 AAGAGCGTTTAGATTACTACTTTAGTG 57.430 33.333 0.00 0.00 39.81 2.74
2544 2653 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2545 2654 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2546 2655 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2547 2656 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2548 2657 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2549 2658 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2550 2659 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2551 2660 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2552 2661 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2553 2662 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2554 2663 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2556 2665 9.950496 CTAGTACTCCCTCCGTAAACTAATATA 57.050 37.037 0.00 0.00 0.00 0.86
2557 2666 7.887495 CCTAGTACTCCCTCCGTAAACTAATAT 59.113 40.741 0.00 0.00 0.00 1.28
2558 2667 7.147302 ACCTAGTACTCCCTCCGTAAACTAATA 60.147 40.741 0.00 0.00 0.00 0.98
2559 2668 6.067350 CCTAGTACTCCCTCCGTAAACTAAT 58.933 44.000 0.00 0.00 0.00 1.73
2560 2669 5.044846 ACCTAGTACTCCCTCCGTAAACTAA 60.045 44.000 0.00 0.00 0.00 2.24
2561 2670 4.475016 ACCTAGTACTCCCTCCGTAAACTA 59.525 45.833 0.00 0.00 0.00 2.24
2562 2671 3.268072 ACCTAGTACTCCCTCCGTAAACT 59.732 47.826 0.00 0.00 0.00 2.66
2563 2672 3.625853 ACCTAGTACTCCCTCCGTAAAC 58.374 50.000 0.00 0.00 0.00 2.01
2564 2673 4.322057 AACCTAGTACTCCCTCCGTAAA 57.678 45.455 0.00 0.00 0.00 2.01
2565 2674 4.322057 AAACCTAGTACTCCCTCCGTAA 57.678 45.455 0.00 0.00 0.00 3.18
2566 2675 5.653255 ATAAACCTAGTACTCCCTCCGTA 57.347 43.478 0.00 0.00 0.00 4.02
2567 2676 2.915657 AAACCTAGTACTCCCTCCGT 57.084 50.000 0.00 0.00 0.00 4.69
2568 2677 5.139001 AGAATAAACCTAGTACTCCCTCCG 58.861 45.833 0.00 0.00 0.00 4.63
2569 2678 6.041865 GGAAGAATAAACCTAGTACTCCCTCC 59.958 46.154 0.00 0.00 0.00 4.30
2570 2679 6.238981 CGGAAGAATAAACCTAGTACTCCCTC 60.239 46.154 0.00 0.00 0.00 4.30
2571 2680 5.597594 CGGAAGAATAAACCTAGTACTCCCT 59.402 44.000 0.00 0.00 0.00 4.20
2572 2681 5.595952 TCGGAAGAATAAACCTAGTACTCCC 59.404 44.000 0.00 0.00 37.03 4.30
2573 2682 6.705863 TCGGAAGAATAAACCTAGTACTCC 57.294 41.667 0.00 0.00 37.03 3.85
2595 2704 2.812011 ACCATTCAGCGGTACAAACTTC 59.188 45.455 0.00 0.00 34.02 3.01
2596 2705 2.552315 CACCATTCAGCGGTACAAACTT 59.448 45.455 0.00 0.00 34.02 2.66
2605 2714 2.412323 ATGCAGCACCATTCAGCGG 61.412 57.895 0.00 0.00 35.48 5.52
2617 2726 2.429571 CACACCGTTGCATGCAGC 60.430 61.111 23.17 23.17 45.96 5.25
2618 2727 2.429571 GCACACCGTTGCATGCAG 60.430 61.111 21.50 12.23 42.49 4.41
2619 2728 4.325304 CGCACACCGTTGCATGCA 62.325 61.111 18.46 18.46 43.15 3.96
2643 2752 2.416747 TCAAGACACCATCTTCAAGCG 58.583 47.619 0.00 0.00 44.99 4.68
2655 2764 7.086376 ACATCAGCAAACAAATATCAAGACAC 58.914 34.615 0.00 0.00 0.00 3.67
2663 2772 7.436118 ACTTGTGAACATCAGCAAACAAATAT 58.564 30.769 0.00 0.00 0.00 1.28
2677 2789 4.816385 ACTGAAACATCGACTTGTGAACAT 59.184 37.500 0.00 0.00 0.00 2.71
2751 2868 6.454848 CGACAAACTGCAGCAAACAAATTAAA 60.455 34.615 15.27 0.00 0.00 1.52
2754 2871 3.306703 CGACAAACTGCAGCAAACAAATT 59.693 39.130 15.27 0.00 0.00 1.82
2755 2872 2.859538 CGACAAACTGCAGCAAACAAAT 59.140 40.909 15.27 0.00 0.00 2.32
2756 2873 2.257894 CGACAAACTGCAGCAAACAAA 58.742 42.857 15.27 0.00 0.00 2.83
2757 2874 1.906757 CGACAAACTGCAGCAAACAA 58.093 45.000 15.27 0.00 0.00 2.83
2758 2875 0.525242 GCGACAAACTGCAGCAAACA 60.525 50.000 15.27 0.00 0.00 2.83
2759 2876 1.208642 GGCGACAAACTGCAGCAAAC 61.209 55.000 15.27 0.97 0.00 2.93
2760 2877 1.065600 GGCGACAAACTGCAGCAAA 59.934 52.632 15.27 0.00 0.00 3.68
2763 2880 3.579626 GACGGCGACAAACTGCAGC 62.580 63.158 16.62 0.00 0.00 5.25
2764 2881 2.551270 GACGGCGACAAACTGCAG 59.449 61.111 16.62 13.48 0.00 4.41
2765 2882 3.334751 CGACGGCGACAAACTGCA 61.335 61.111 16.62 0.00 40.82 4.41
2766 2883 4.719616 GCGACGGCGACAAACTGC 62.720 66.667 18.90 1.55 40.82 4.40
2779 2896 2.814183 AATCCTGACACGACGGCGAC 62.814 60.000 22.49 6.59 41.64 5.19
2780 2897 1.307355 TAATCCTGACACGACGGCGA 61.307 55.000 22.49 0.00 41.64 5.54
2781 2898 0.866061 CTAATCCTGACACGACGGCG 60.866 60.000 10.39 10.39 44.79 6.46
2782 2899 0.454600 TCTAATCCTGACACGACGGC 59.545 55.000 0.00 0.00 0.00 5.68
2784 2901 2.478031 CCTGTCTAATCCTGACACGACG 60.478 54.545 0.00 0.00 39.23 5.12
2786 2903 3.081710 TCCTGTCTAATCCTGACACGA 57.918 47.619 0.00 0.00 39.23 4.35
2788 2905 4.938226 CCTTTTCCTGTCTAATCCTGACAC 59.062 45.833 0.00 0.00 39.23 3.67
2790 2907 4.518249 CCCTTTTCCTGTCTAATCCTGAC 58.482 47.826 0.00 0.00 35.21 3.51
2791 2908 3.054361 GCCCTTTTCCTGTCTAATCCTGA 60.054 47.826 0.00 0.00 0.00 3.86
2792 2909 3.054065 AGCCCTTTTCCTGTCTAATCCTG 60.054 47.826 0.00 0.00 0.00 3.86
2794 2911 3.282885 CAGCCCTTTTCCTGTCTAATCC 58.717 50.000 0.00 0.00 0.00 3.01
2795 2912 3.956744 ACAGCCCTTTTCCTGTCTAATC 58.043 45.455 0.00 0.00 37.77 1.75
2796 2913 5.398012 GGATACAGCCCTTTTCCTGTCTAAT 60.398 44.000 0.00 0.00 41.13 1.73
2798 2915 3.454812 GGATACAGCCCTTTTCCTGTCTA 59.545 47.826 0.00 0.00 41.13 2.59
2799 2916 2.239907 GGATACAGCCCTTTTCCTGTCT 59.760 50.000 0.00 0.00 41.13 3.41
2801 2918 1.285078 GGGATACAGCCCTTTTCCTGT 59.715 52.381 0.00 0.00 45.12 4.00
2810 2927 1.692749 TCACCCTGGGATACAGCCC 60.693 63.158 22.23 0.00 46.14 5.19
2811 2928 1.527370 GTCACCCTGGGATACAGCC 59.473 63.158 22.23 0.00 46.14 4.85
2812 2929 1.144057 CGTCACCCTGGGATACAGC 59.856 63.158 22.23 2.28 46.14 4.40
2814 2931 0.251877 TGACGTCACCCTGGGATACA 60.252 55.000 22.23 7.63 39.74 2.29
2815 2932 1.120530 ATGACGTCACCCTGGGATAC 58.879 55.000 22.71 15.30 0.00 2.24
2817 2934 1.874129 TTATGACGTCACCCTGGGAT 58.126 50.000 22.71 4.68 0.00 3.85
2819 2936 2.710096 AATTATGACGTCACCCTGGG 57.290 50.000 22.71 12.28 0.00 4.45
2820 2937 4.369182 GTCTAATTATGACGTCACCCTGG 58.631 47.826 22.71 9.87 0.00 4.45
2821 2938 4.142026 TGGTCTAATTATGACGTCACCCTG 60.142 45.833 22.71 9.36 35.45 4.45
2823 2940 4.142004 ACTGGTCTAATTATGACGTCACCC 60.142 45.833 22.71 10.73 35.45 4.61
2824 2941 5.007385 ACTGGTCTAATTATGACGTCACC 57.993 43.478 22.71 15.15 35.45 4.02
2826 2943 9.128404 AGTATTACTGGTCTAATTATGACGTCA 57.872 33.333 22.48 22.48 35.45 4.35
2827 2944 9.395707 CAGTATTACTGGTCTAATTATGACGTC 57.604 37.037 14.86 9.11 42.35 4.34
2884 3001 1.436983 GGCATCATCCGGGTTCGAAC 61.437 60.000 20.14 20.14 39.00 3.95
2885 3002 1.153249 GGCATCATCCGGGTTCGAA 60.153 57.895 0.00 0.00 39.00 3.71
2886 3003 2.363172 TGGCATCATCCGGGTTCGA 61.363 57.895 0.00 0.00 39.00 3.71
2887 3004 2.180204 GTGGCATCATCCGGGTTCG 61.180 63.158 0.00 0.00 0.00 3.95
2897 3682 3.391965 GAGCAAAACAATTGTGGCATCA 58.608 40.909 23.67 0.00 0.00 3.07
2899 3684 2.769893 GGAGCAAAACAATTGTGGCAT 58.230 42.857 23.67 13.53 0.00 4.40
2900 3685 1.537776 CGGAGCAAAACAATTGTGGCA 60.538 47.619 23.67 0.00 0.00 4.92
2901 3686 1.139163 CGGAGCAAAACAATTGTGGC 58.861 50.000 12.82 15.81 0.00 5.01
2908 3693 2.231478 TGGACAAAACGGAGCAAAACAA 59.769 40.909 0.00 0.00 0.00 2.83
2910 3695 2.459934 CTGGACAAAACGGAGCAAAAC 58.540 47.619 0.00 0.00 0.00 2.43
2935 3722 3.618594 CCAGACCAATTATGACGTCACTG 59.381 47.826 22.71 19.21 0.00 3.66
2952 3739 4.371855 TCAGACGATATTGTCACCAGAC 57.628 45.455 22.50 0.00 45.19 3.51
2953 3740 5.598416 ATTCAGACGATATTGTCACCAGA 57.402 39.130 22.50 12.68 41.41 3.86
2954 3741 7.770801 TTTATTCAGACGATATTGTCACCAG 57.229 36.000 22.50 10.89 41.41 4.00
2955 3742 8.731275 AATTTATTCAGACGATATTGTCACCA 57.269 30.769 22.50 7.94 41.41 4.17
2987 3774 9.545611 CCTTTCAATTTTATTAATGCAACAAGC 57.454 29.630 0.00 0.00 45.96 4.01
3001 3788 4.641094 ACACCACGACACCTTTCAATTTTA 59.359 37.500 0.00 0.00 0.00 1.52
3007 3794 1.758280 ACTACACCACGACACCTTTCA 59.242 47.619 0.00 0.00 0.00 2.69
3008 3795 2.521105 ACTACACCACGACACCTTTC 57.479 50.000 0.00 0.00 0.00 2.62
3017 3804 1.271379 TGCTAGACCAACTACACCACG 59.729 52.381 0.00 0.00 0.00 4.94
3054 3841 3.678806 CGGATTTGAACCGGAGATCTTCA 60.679 47.826 9.46 3.98 45.65 3.02
3096 3883 6.926630 AATAAGAATAAACAACCCCAGCAA 57.073 33.333 0.00 0.00 0.00 3.91
3151 3938 6.882610 AATGTCAATACAAAGTTCAGCAGA 57.117 33.333 0.00 0.00 39.58 4.26
3174 3961 6.392354 CATTATCAAGCTCAAGCAGGAAAAA 58.608 36.000 4.59 1.81 45.16 1.94
3175 3962 5.105635 CCATTATCAAGCTCAAGCAGGAAAA 60.106 40.000 4.59 0.00 45.16 2.29
3176 3963 4.400251 CCATTATCAAGCTCAAGCAGGAAA 59.600 41.667 4.59 0.59 45.16 3.13
3177 3964 3.949754 CCATTATCAAGCTCAAGCAGGAA 59.050 43.478 4.59 0.00 45.16 3.36
3178 3965 3.054139 ACCATTATCAAGCTCAAGCAGGA 60.054 43.478 4.59 1.60 45.16 3.86
3179 3966 3.066342 CACCATTATCAAGCTCAAGCAGG 59.934 47.826 4.59 0.00 45.16 4.85
3180 3967 3.943381 TCACCATTATCAAGCTCAAGCAG 59.057 43.478 4.59 0.00 45.16 4.24
3181 3968 3.954200 TCACCATTATCAAGCTCAAGCA 58.046 40.909 4.59 0.00 45.16 3.91
3182 3969 4.577693 TCATCACCATTATCAAGCTCAAGC 59.422 41.667 0.00 0.00 42.49 4.01
3183 3970 6.879276 ATCATCACCATTATCAAGCTCAAG 57.121 37.500 0.00 0.00 0.00 3.02
3184 3971 7.738847 TCTATCATCACCATTATCAAGCTCAA 58.261 34.615 0.00 0.00 0.00 3.02
3185 3972 7.307131 TCTATCATCACCATTATCAAGCTCA 57.693 36.000 0.00 0.00 0.00 4.26
3186 3973 8.666573 CAATCTATCATCACCATTATCAAGCTC 58.333 37.037 0.00 0.00 0.00 4.09
3187 3974 8.162085 ACAATCTATCATCACCATTATCAAGCT 58.838 33.333 0.00 0.00 0.00 3.74
3188 3975 8.235226 CACAATCTATCATCACCATTATCAAGC 58.765 37.037 0.00 0.00 0.00 4.01
3189 3976 8.235226 GCACAATCTATCATCACCATTATCAAG 58.765 37.037 0.00 0.00 0.00 3.02
3190 3977 7.720515 TGCACAATCTATCATCACCATTATCAA 59.279 33.333 0.00 0.00 0.00 2.57
3191 3978 7.225725 TGCACAATCTATCATCACCATTATCA 58.774 34.615 0.00 0.00 0.00 2.15
3192 3979 7.677454 TGCACAATCTATCATCACCATTATC 57.323 36.000 0.00 0.00 0.00 1.75
3193 3980 8.645814 AATGCACAATCTATCATCACCATTAT 57.354 30.769 0.00 0.00 0.00 1.28
3194 3981 8.354426 CAAATGCACAATCTATCATCACCATTA 58.646 33.333 0.00 0.00 0.00 1.90
3195 3982 6.971726 AATGCACAATCTATCATCACCATT 57.028 33.333 0.00 0.00 0.00 3.16
3196 3983 6.322969 ACAAATGCACAATCTATCATCACCAT 59.677 34.615 0.00 0.00 0.00 3.55
3197 3984 5.653330 ACAAATGCACAATCTATCATCACCA 59.347 36.000 0.00 0.00 0.00 4.17
3198 3985 6.140303 ACAAATGCACAATCTATCATCACC 57.860 37.500 0.00 0.00 0.00 4.02
3206 3993 8.637986 GGGGAAAATATACAAATGCACAATCTA 58.362 33.333 0.00 0.00 0.00 1.98
3207 3994 7.125507 TGGGGAAAATATACAAATGCACAATCT 59.874 33.333 0.00 0.00 0.00 2.40
3208 3995 7.224557 GTGGGGAAAATATACAAATGCACAATC 59.775 37.037 0.00 0.00 0.00 2.67
3209 3996 7.047271 GTGGGGAAAATATACAAATGCACAAT 58.953 34.615 0.00 0.00 0.00 2.71
3210 3997 6.014242 TGTGGGGAAAATATACAAATGCACAA 60.014 34.615 0.00 0.00 0.00 3.33
3211 3998 5.481824 TGTGGGGAAAATATACAAATGCACA 59.518 36.000 0.00 0.00 0.00 4.57
3212 3999 5.971763 TGTGGGGAAAATATACAAATGCAC 58.028 37.500 0.00 0.00 0.00 4.57
3213 4000 6.611613 TTGTGGGGAAAATATACAAATGCA 57.388 33.333 0.00 0.00 0.00 3.96
3214 4001 7.271511 TCATTGTGGGGAAAATATACAAATGC 58.728 34.615 0.00 0.00 35.23 3.56
3215 4002 9.316730 CTTCATTGTGGGGAAAATATACAAATG 57.683 33.333 0.00 0.00 35.23 2.32
3216 4003 9.045745 ACTTCATTGTGGGGAAAATATACAAAT 57.954 29.630 0.00 0.00 35.23 2.32
3217 4004 8.310382 CACTTCATTGTGGGGAAAATATACAAA 58.690 33.333 0.00 0.00 35.23 2.83
3218 4005 7.578571 GCACTTCATTGTGGGGAAAATATACAA 60.579 37.037 0.00 0.00 38.31 2.41
3219 4006 6.127479 GCACTTCATTGTGGGGAAAATATACA 60.127 38.462 0.00 0.00 38.31 2.29
3220 4007 6.127479 TGCACTTCATTGTGGGGAAAATATAC 60.127 38.462 0.00 0.00 38.31 1.47
3221 4008 5.954752 TGCACTTCATTGTGGGGAAAATATA 59.045 36.000 0.00 0.00 38.31 0.86
3222 4009 4.776837 TGCACTTCATTGTGGGGAAAATAT 59.223 37.500 0.00 0.00 38.31 1.28
3223 4010 4.155709 TGCACTTCATTGTGGGGAAAATA 58.844 39.130 0.00 0.00 38.31 1.40
3224 4011 2.971330 TGCACTTCATTGTGGGGAAAAT 59.029 40.909 0.00 0.00 38.31 1.82
3225 4012 2.392662 TGCACTTCATTGTGGGGAAAA 58.607 42.857 0.00 0.00 38.31 2.29
3226 4013 2.079170 TGCACTTCATTGTGGGGAAA 57.921 45.000 0.00 0.00 38.31 3.13
3227 4014 2.307496 ATGCACTTCATTGTGGGGAA 57.693 45.000 0.00 0.00 38.31 3.97
3228 4015 2.357050 CCTATGCACTTCATTGTGGGGA 60.357 50.000 0.00 0.00 38.31 4.81
3229 4016 2.026641 CCTATGCACTTCATTGTGGGG 58.973 52.381 0.00 0.00 38.31 4.96
3230 4017 2.726821 ACCTATGCACTTCATTGTGGG 58.273 47.619 0.00 0.00 38.31 4.61
3231 4018 4.789012 AAACCTATGCACTTCATTGTGG 57.211 40.909 0.00 0.00 38.31 4.17
3232 4019 7.498900 TCCTATAAACCTATGCACTTCATTGTG 59.501 37.037 0.00 0.00 40.62 3.33
3233 4020 7.573710 TCCTATAAACCTATGCACTTCATTGT 58.426 34.615 0.00 0.00 36.63 2.71
3234 4021 8.627208 ATCCTATAAACCTATGCACTTCATTG 57.373 34.615 0.00 0.00 36.63 2.82
3235 4022 9.950496 CTATCCTATAAACCTATGCACTTCATT 57.050 33.333 0.00 0.00 36.63 2.57
3236 4023 9.326489 TCTATCCTATAAACCTATGCACTTCAT 57.674 33.333 0.00 0.00 39.17 2.57
3237 4024 8.721133 TCTATCCTATAAACCTATGCACTTCA 57.279 34.615 0.00 0.00 0.00 3.02
3240 4027 8.763601 GGAATCTATCCTATAAACCTATGCACT 58.236 37.037 0.00 0.00 45.56 4.40
3241 4028 8.950208 GGAATCTATCCTATAAACCTATGCAC 57.050 38.462 0.00 0.00 45.56 4.57
3274 4061 9.320295 TGTTTTATTTCCAACATCTATCCCTTT 57.680 29.630 0.00 0.00 0.00 3.11
3275 4062 8.893563 TGTTTTATTTCCAACATCTATCCCTT 57.106 30.769 0.00 0.00 0.00 3.95
3276 4063 8.749354 GTTGTTTTATTTCCAACATCTATCCCT 58.251 33.333 0.00 0.00 38.61 4.20
3277 4064 8.527810 TGTTGTTTTATTTCCAACATCTATCCC 58.472 33.333 0.00 0.00 42.41 3.85
3278 4065 9.921637 TTGTTGTTTTATTTCCAACATCTATCC 57.078 29.630 5.40 0.00 45.45 2.59
3282 4069 9.665719 ACTTTTGTTGTTTTATTTCCAACATCT 57.334 25.926 5.40 0.00 45.45 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.