Multiple sequence alignment - TraesCS5D01G038000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G038000 chr5D 100.000 5370 0 0 1 5370 37133508 37138877 0.000000e+00 9917.0
1 TraesCS5D01G038000 chr5D 88.732 142 7 3 574 706 37133938 37134079 1.200000e-36 165.0
2 TraesCS5D01G038000 chr5D 89.600 125 2 3 595 710 4377591 4377713 1.210000e-31 148.0
3 TraesCS5D01G038000 chr5D 88.000 125 4 3 595 710 4457569 4457691 2.610000e-28 137.0
4 TraesCS5D01G038000 chr5D 86.508 126 5 3 595 710 4538674 4538797 1.570000e-25 128.0
5 TraesCS5D01G038000 chr5A 90.665 3053 191 42 2291 5289 26132780 26135792 0.000000e+00 3973.0
6 TraesCS5D01G038000 chr5A 92.036 1670 83 16 574 2206 26130887 26132543 0.000000e+00 2302.0
7 TraesCS5D01G038000 chr5A 92.483 572 42 1 4 574 26130459 26131030 0.000000e+00 817.0
8 TraesCS5D01G038000 chr5A 77.534 957 179 28 3067 4002 571682235 571683176 1.320000e-150 544.0
9 TraesCS5D01G038000 chr5A 95.745 141 6 0 2205 2345 26132647 26132787 1.500000e-55 228.0
10 TraesCS5D01G038000 chr5B 93.238 2366 128 12 2156 4508 27804736 27807082 0.000000e+00 3454.0
11 TraesCS5D01G038000 chr5B 92.286 1439 68 16 722 2120 27803304 27804739 0.000000e+00 2002.0
12 TraesCS5D01G038000 chr5B 77.926 974 177 30 3067 4019 553179987 553180943 1.680000e-159 573.0
13 TraesCS5D01G038000 chr5B 89.423 208 22 0 372 579 273895306 273895099 4.120000e-66 263.0
14 TraesCS5D01G038000 chr5B 87.324 142 9 4 574 706 273895247 273895106 2.590000e-33 154.0
15 TraesCS5D01G038000 chr5B 91.358 81 7 0 5112 5192 27808181 27808261 1.580000e-20 111.0
16 TraesCS5D01G038000 chr5B 95.312 64 3 0 589 652 710215752 710215815 9.520000e-18 102.0
17 TraesCS5D01G038000 chr6B 81.898 453 57 18 123 574 522517956 522518384 5.110000e-95 359.0
18 TraesCS5D01G038000 chr3D 88.261 230 22 4 347 574 594634235 594634461 2.460000e-68 270.0
19 TraesCS5D01G038000 chr2D 88.312 231 20 5 347 574 70392310 70392084 2.460000e-68 270.0
20 TraesCS5D01G038000 chr2D 83.582 134 12 3 573 696 620304611 620304478 3.400000e-22 117.0
21 TraesCS5D01G038000 chr2B 88.393 224 25 1 351 574 794997623 794997401 8.870000e-68 268.0
22 TraesCS5D01G038000 chr2B 85.816 141 12 2 574 706 794997543 794997403 5.610000e-30 143.0
23 TraesCS5D01G038000 chr6D 88.263 213 24 1 363 574 451064564 451064776 2.480000e-63 254.0
24 TraesCS5D01G038000 chr6D 87.013 154 9 6 573 715 451064631 451064784 4.300000e-36 163.0
25 TraesCS5D01G038000 chr6D 84.211 152 13 8 573 715 465038290 465038141 2.610000e-28 137.0
26 TraesCS5D01G038000 chr1D 86.957 230 25 3 347 573 18607144 18606917 2.480000e-63 254.0
27 TraesCS5D01G038000 chr7A 87.387 222 25 3 354 574 46498769 46498550 8.930000e-63 252.0
28 TraesCS5D01G038000 chr6A 86.275 153 9 7 573 715 596631355 596631505 7.200000e-34 156.0
29 TraesCS5D01G038000 chr3A 84.722 144 13 2 573 707 699556031 699555888 9.380000e-28 135.0
30 TraesCS5D01G038000 chr1A 85.088 114 6 2 613 716 579423300 579423188 7.360000e-19 106.0
31 TraesCS5D01G038000 chr3B 94.915 59 2 1 653 711 810606842 810606899 2.060000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G038000 chr5D 37133508 37138877 5369 False 9917.000000 9917 100.00000 1 5370 1 chr5D.!!$F4 5369
1 TraesCS5D01G038000 chr5A 26130459 26135792 5333 False 1830.000000 3973 92.73225 4 5289 4 chr5A.!!$F2 5285
2 TraesCS5D01G038000 chr5A 571682235 571683176 941 False 544.000000 544 77.53400 3067 4002 1 chr5A.!!$F1 935
3 TraesCS5D01G038000 chr5B 27803304 27808261 4957 False 1855.666667 3454 92.29400 722 5192 3 chr5B.!!$F3 4470
4 TraesCS5D01G038000 chr5B 553179987 553180943 956 False 573.000000 573 77.92600 3067 4019 1 chr5B.!!$F1 952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 834 0.032813 CCATGTCTCCCCTTTGCCAT 60.033 55.000 0.00 0.0 0.00 4.40 F
1003 1015 0.109086 CTCTTGTCTCCACGCGATGT 60.109 55.000 15.93 0.0 0.00 3.06 F
1273 1288 0.456221 CGTCATCGACCTGTAAGCCT 59.544 55.000 0.00 0.0 39.71 4.58 F
2139 2192 1.350684 TGATTCACTGCTTGCCTACCA 59.649 47.619 0.00 0.0 0.00 3.25 F
3039 3249 0.457337 GCGGATTCTGCAGCCTTTTG 60.457 55.000 9.47 0.0 0.00 2.44 F
4099 4322 0.616111 AATCTGGCAGGGACGACTCT 60.616 55.000 15.73 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2145 0.330941 TATGGGTGACAATGGCAGCA 59.669 50.000 20.60 6.74 35.57 4.41 R
2747 2957 1.094785 CTTCGGCCACAAATACAGGG 58.905 55.000 2.24 0.00 0.00 4.45 R
2981 3191 2.499289 ACAACAACTGATTTTGGTGCCA 59.501 40.909 0.80 0.00 46.45 4.92 R
4029 4249 0.035317 TGCTGGTGCAGTAGGTTCTG 59.965 55.000 0.00 0.00 45.31 3.02 R
4115 4338 0.326264 ATGTCTGGACCTCCTGTTGC 59.674 55.000 0.00 0.00 36.48 4.17 R
5266 6054 0.036732 TTGCTGCTGTGGGTAGGAAG 59.963 55.000 0.00 0.00 33.72 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.497309 ATTGACGGGGAGGGCTTTCA 61.497 55.000 0.00 0.00 0.00 2.69
88 89 3.059386 GGAAATGGACGCCCGCAA 61.059 61.111 0.00 0.00 34.29 4.85
129 131 0.250510 GCCCTTGCTATAGCCCTCAC 60.251 60.000 21.84 5.42 41.18 3.51
143 145 1.254026 CCTCACGTCTGGGTAGTTCA 58.746 55.000 0.00 0.00 0.00 3.18
162 164 4.344865 GGGGGCTTGCAGAACGGA 62.345 66.667 0.00 0.00 0.00 4.69
202 204 0.310854 GCAAAACCCGTTGTCTGGAG 59.689 55.000 0.00 0.00 0.00 3.86
204 206 2.841215 CAAAACCCGTTGTCTGGAGTA 58.159 47.619 0.00 0.00 0.00 2.59
212 214 3.487711 CCGTTGTCTGGAGTAAGATCGAG 60.488 52.174 0.00 0.00 0.00 4.04
217 219 3.314080 GTCTGGAGTAAGATCGAGTGAGG 59.686 52.174 0.00 0.00 0.00 3.86
222 224 4.261825 GGAGTAAGATCGAGTGAGGATTGG 60.262 50.000 0.00 0.00 0.00 3.16
231 233 5.907207 TCGAGTGAGGATTGGAAAGAATAG 58.093 41.667 0.00 0.00 0.00 1.73
255 257 4.844349 AGAAAAATCAGAATCGGGAGGA 57.156 40.909 0.00 0.00 0.00 3.71
264 266 4.700213 TCAGAATCGGGAGGATTTGTTTTC 59.300 41.667 0.00 0.00 45.33 2.29
267 269 3.780804 TCGGGAGGATTTGTTTTCTGA 57.219 42.857 0.00 0.00 0.00 3.27
270 272 3.437049 CGGGAGGATTTGTTTTCTGAGAC 59.563 47.826 0.00 0.00 0.00 3.36
285 287 0.385751 GAGACGATCGAGGGAATGCA 59.614 55.000 24.34 0.00 0.00 3.96
309 311 6.461110 AGATGCTTTTGATAGATGTTTGGG 57.539 37.500 0.00 0.00 0.00 4.12
337 339 2.094338 AGGAAGGAAATGACGTACGGTC 60.094 50.000 21.06 14.53 46.27 4.79
428 430 9.127277 TCCATATAAAAGTTACCAAATACTGCC 57.873 33.333 0.00 0.00 0.00 4.85
433 435 7.780008 AAAAGTTACCAAATACTGCCAAAAC 57.220 32.000 0.00 0.00 0.00 2.43
439 441 6.173427 ACCAAATACTGCCAAAACTTGATT 57.827 33.333 0.00 0.00 0.00 2.57
512 514 8.552865 GTTTAAATGTGTTGGTGGGATAAAAAC 58.447 33.333 0.00 0.00 0.00 2.43
518 520 2.883026 TGGTGGGATAAAAACCAGTGG 58.117 47.619 7.91 7.91 39.05 4.00
524 526 3.501568 GGGATAAAAACCAGTGGGGAAGT 60.502 47.826 15.21 0.00 41.15 3.01
531 533 4.311520 AACCAGTGGGGAAGTATTAACC 57.688 45.455 15.21 0.00 41.15 2.85
533 535 2.420967 CCAGTGGGGAAGTATTAACCGG 60.421 54.545 0.00 0.00 40.01 5.28
535 537 2.770232 AGTGGGGAAGTATTAACCGGAG 59.230 50.000 9.46 0.00 0.00 4.63
536 538 2.502947 GTGGGGAAGTATTAACCGGAGT 59.497 50.000 9.46 0.00 0.00 3.85
537 539 2.502538 TGGGGAAGTATTAACCGGAGTG 59.497 50.000 9.46 0.00 0.00 3.51
538 540 2.767960 GGGGAAGTATTAACCGGAGTGA 59.232 50.000 9.46 0.00 0.00 3.41
539 541 3.181468 GGGGAAGTATTAACCGGAGTGAG 60.181 52.174 9.46 0.00 0.00 3.51
540 542 3.181468 GGGAAGTATTAACCGGAGTGAGG 60.181 52.174 9.46 0.00 0.00 3.86
541 543 3.455327 GAAGTATTAACCGGAGTGAGGC 58.545 50.000 9.46 0.00 0.00 4.70
542 544 1.407979 AGTATTAACCGGAGTGAGGCG 59.592 52.381 9.46 0.00 0.00 5.52
543 545 1.406539 GTATTAACCGGAGTGAGGCGA 59.593 52.381 9.46 0.00 0.00 5.54
544 546 0.460311 ATTAACCGGAGTGAGGCGAG 59.540 55.000 9.46 0.00 0.00 5.03
545 547 0.609957 TTAACCGGAGTGAGGCGAGA 60.610 55.000 9.46 0.00 0.00 4.04
546 548 1.310933 TAACCGGAGTGAGGCGAGAC 61.311 60.000 9.46 0.00 0.00 3.36
547 549 2.752238 CCGGAGTGAGGCGAGACT 60.752 66.667 0.00 0.00 0.00 3.24
548 550 1.451567 CCGGAGTGAGGCGAGACTA 60.452 63.158 0.00 0.00 0.00 2.59
549 551 1.716826 CCGGAGTGAGGCGAGACTAC 61.717 65.000 0.00 0.00 0.00 2.73
550 552 1.716826 CGGAGTGAGGCGAGACTACC 61.717 65.000 0.00 0.00 0.00 3.18
551 553 0.680280 GGAGTGAGGCGAGACTACCA 60.680 60.000 0.00 0.00 0.00 3.25
552 554 1.174783 GAGTGAGGCGAGACTACCAA 58.825 55.000 0.00 0.00 0.00 3.67
553 555 1.751924 GAGTGAGGCGAGACTACCAAT 59.248 52.381 0.00 0.00 0.00 3.16
554 556 2.166664 GAGTGAGGCGAGACTACCAATT 59.833 50.000 0.00 0.00 0.00 2.32
555 557 2.166664 AGTGAGGCGAGACTACCAATTC 59.833 50.000 0.00 0.00 0.00 2.17
556 558 2.094182 GTGAGGCGAGACTACCAATTCA 60.094 50.000 0.00 0.00 0.00 2.57
557 559 2.166459 TGAGGCGAGACTACCAATTCAG 59.834 50.000 0.00 0.00 0.00 3.02
558 560 2.427453 GAGGCGAGACTACCAATTCAGA 59.573 50.000 0.00 0.00 0.00 3.27
559 561 2.166664 AGGCGAGACTACCAATTCAGAC 59.833 50.000 0.00 0.00 0.00 3.51
560 562 2.094182 GGCGAGACTACCAATTCAGACA 60.094 50.000 0.00 0.00 0.00 3.41
561 563 3.430929 GGCGAGACTACCAATTCAGACAT 60.431 47.826 0.00 0.00 0.00 3.06
562 564 4.184629 GCGAGACTACCAATTCAGACATT 58.815 43.478 0.00 0.00 0.00 2.71
563 565 5.348986 GCGAGACTACCAATTCAGACATTA 58.651 41.667 0.00 0.00 0.00 1.90
564 566 5.460419 GCGAGACTACCAATTCAGACATTAG 59.540 44.000 0.00 0.00 0.00 1.73
565 567 6.680625 GCGAGACTACCAATTCAGACATTAGA 60.681 42.308 0.00 0.00 0.00 2.10
566 568 7.258441 CGAGACTACCAATTCAGACATTAGAA 58.742 38.462 0.00 0.00 0.00 2.10
567 569 7.759886 CGAGACTACCAATTCAGACATTAGAAA 59.240 37.037 0.00 0.00 0.00 2.52
568 570 9.606631 GAGACTACCAATTCAGACATTAGAAAT 57.393 33.333 0.00 0.00 0.00 2.17
593 595 6.393171 AGAGAAACTTGATTTTATTGGCAGC 58.607 36.000 0.00 0.00 0.00 5.25
594 596 6.210185 AGAGAAACTTGATTTTATTGGCAGCT 59.790 34.615 0.00 0.00 0.00 4.24
595 597 7.394359 AGAGAAACTTGATTTTATTGGCAGCTA 59.606 33.333 0.00 0.00 0.00 3.32
596 598 7.895759 AGAAACTTGATTTTATTGGCAGCTAA 58.104 30.769 0.00 0.00 0.00 3.09
597 599 8.367156 AGAAACTTGATTTTATTGGCAGCTAAA 58.633 29.630 0.00 0.00 0.00 1.85
598 600 8.900983 AAACTTGATTTTATTGGCAGCTAAAA 57.099 26.923 15.15 15.15 32.93 1.52
599 601 9.506018 AAACTTGATTTTATTGGCAGCTAAAAT 57.494 25.926 20.60 20.60 39.19 1.82
600 602 8.707938 ACTTGATTTTATTGGCAGCTAAAATC 57.292 30.769 28.55 28.55 45.70 2.17
602 604 6.753897 GATTTTATTGGCAGCTAAAATCGG 57.246 37.500 25.23 0.00 41.10 4.18
603 605 5.652994 TTTTATTGGCAGCTAAAATCGGT 57.347 34.783 11.00 0.00 0.00 4.69
604 606 5.652994 TTTATTGGCAGCTAAAATCGGTT 57.347 34.783 0.00 0.00 0.00 4.44
605 607 5.652994 TTATTGGCAGCTAAAATCGGTTT 57.347 34.783 0.00 0.00 0.00 3.27
606 608 6.761099 TTATTGGCAGCTAAAATCGGTTTA 57.239 33.333 0.00 0.00 0.00 2.01
607 609 5.652994 ATTGGCAGCTAAAATCGGTTTAA 57.347 34.783 0.00 0.00 31.22 1.52
608 610 5.455056 TTGGCAGCTAAAATCGGTTTAAA 57.545 34.783 0.00 0.00 31.22 1.52
609 611 5.652994 TGGCAGCTAAAATCGGTTTAAAT 57.347 34.783 0.00 0.00 31.22 1.40
610 612 6.761099 TGGCAGCTAAAATCGGTTTAAATA 57.239 33.333 0.00 0.00 31.22 1.40
611 613 6.791303 TGGCAGCTAAAATCGGTTTAAATAG 58.209 36.000 0.00 0.00 31.22 1.73
612 614 6.600032 TGGCAGCTAAAATCGGTTTAAATAGA 59.400 34.615 0.00 0.00 31.22 1.98
613 615 7.284489 TGGCAGCTAAAATCGGTTTAAATAGAT 59.716 33.333 0.00 0.00 31.22 1.98
614 616 7.803659 GGCAGCTAAAATCGGTTTAAATAGATC 59.196 37.037 0.00 0.00 31.22 2.75
615 617 8.342634 GCAGCTAAAATCGGTTTAAATAGATCA 58.657 33.333 0.00 0.00 31.22 2.92
618 620 9.612620 GCTAAAATCGGTTTAAATAGATCATGG 57.387 33.333 0.00 5.16 31.22 3.66
642 644 8.180317 GGATAAAATCCGGTTTAAATGTGTTG 57.820 34.615 0.00 0.00 40.13 3.33
643 645 7.276878 GGATAAAATCCGGTTTAAATGTGTTGG 59.723 37.037 0.00 0.00 40.13 3.77
644 646 5.538849 AAATCCGGTTTAAATGTGTTGGT 57.461 34.783 0.00 0.00 0.00 3.67
645 647 3.992260 TCCGGTTTAAATGTGTTGGTG 57.008 42.857 0.00 0.00 0.00 4.17
646 648 2.623889 TCCGGTTTAAATGTGTTGGTGG 59.376 45.455 0.00 0.00 0.00 4.61
647 649 2.288518 CCGGTTTAAATGTGTTGGTGGG 60.289 50.000 0.00 0.00 0.00 4.61
648 650 2.623889 CGGTTTAAATGTGTTGGTGGGA 59.376 45.455 0.00 0.00 0.00 4.37
649 651 3.257127 CGGTTTAAATGTGTTGGTGGGAT 59.743 43.478 0.00 0.00 0.00 3.85
650 652 4.459685 CGGTTTAAATGTGTTGGTGGGATA 59.540 41.667 0.00 0.00 0.00 2.59
651 653 5.047943 CGGTTTAAATGTGTTGGTGGGATAA 60.048 40.000 0.00 0.00 0.00 1.75
652 654 6.394809 GGTTTAAATGTGTTGGTGGGATAAG 58.605 40.000 0.00 0.00 0.00 1.73
653 655 6.394809 GTTTAAATGTGTTGGTGGGATAAGG 58.605 40.000 0.00 0.00 0.00 2.69
654 656 2.826674 ATGTGTTGGTGGGATAAGGG 57.173 50.000 0.00 0.00 0.00 3.95
655 657 1.748732 TGTGTTGGTGGGATAAGGGA 58.251 50.000 0.00 0.00 0.00 4.20
656 658 2.066592 TGTGTTGGTGGGATAAGGGAA 58.933 47.619 0.00 0.00 0.00 3.97
657 659 2.652348 TGTGTTGGTGGGATAAGGGAAT 59.348 45.455 0.00 0.00 0.00 3.01
658 660 3.023832 GTGTTGGTGGGATAAGGGAATG 58.976 50.000 0.00 0.00 0.00 2.67
659 661 2.922955 TGTTGGTGGGATAAGGGAATGA 59.077 45.455 0.00 0.00 0.00 2.57
660 662 3.531397 TGTTGGTGGGATAAGGGAATGAT 59.469 43.478 0.00 0.00 0.00 2.45
661 663 4.016666 TGTTGGTGGGATAAGGGAATGATT 60.017 41.667 0.00 0.00 0.00 2.57
662 664 5.194740 TGTTGGTGGGATAAGGGAATGATTA 59.805 40.000 0.00 0.00 0.00 1.75
663 665 6.133356 GTTGGTGGGATAAGGGAATGATTAA 58.867 40.000 0.00 0.00 0.00 1.40
664 666 5.701224 TGGTGGGATAAGGGAATGATTAAC 58.299 41.667 0.00 0.00 0.00 2.01
665 667 5.077564 GGTGGGATAAGGGAATGATTAACC 58.922 45.833 0.00 0.00 0.00 2.85
666 668 4.760204 GTGGGATAAGGGAATGATTAACCG 59.240 45.833 0.00 0.00 0.00 4.44
667 669 4.202524 TGGGATAAGGGAATGATTAACCGG 60.203 45.833 0.00 0.00 0.00 5.28
668 670 4.042435 GGGATAAGGGAATGATTAACCGGA 59.958 45.833 9.46 0.00 0.00 5.14
669 671 5.246307 GGATAAGGGAATGATTAACCGGAG 58.754 45.833 9.46 0.00 0.00 4.63
706 708 6.017192 ACCAACTCAGACATTAGGAGTAGAA 58.983 40.000 0.00 0.00 40.80 2.10
707 709 6.153680 ACCAACTCAGACATTAGGAGTAGAAG 59.846 42.308 0.00 0.00 40.80 2.85
708 710 6.378564 CCAACTCAGACATTAGGAGTAGAAGA 59.621 42.308 0.00 0.00 40.80 2.87
710 712 8.474025 CAACTCAGACATTAGGAGTAGAAGATT 58.526 37.037 0.00 0.00 40.80 2.40
711 713 9.702253 AACTCAGACATTAGGAGTAGAAGATTA 57.298 33.333 0.00 0.00 40.80 1.75
713 715 9.567776 CTCAGACATTAGGAGTAGAAGATTAGA 57.432 37.037 0.00 0.00 0.00 2.10
776 778 4.087892 CTCTGTCAGGTGGGGCCG 62.088 72.222 0.00 0.00 43.70 6.13
832 834 0.032813 CCATGTCTCCCCTTTGCCAT 60.033 55.000 0.00 0.00 0.00 4.40
844 846 3.564352 CCCTTTGCCATACCTTTTCTCCT 60.564 47.826 0.00 0.00 0.00 3.69
845 847 3.696548 CCTTTGCCATACCTTTTCTCCTC 59.303 47.826 0.00 0.00 0.00 3.71
846 848 4.568592 CCTTTGCCATACCTTTTCTCCTCT 60.569 45.833 0.00 0.00 0.00 3.69
896 898 4.548513 CCTCCTCCTCCTCCCCCG 62.549 77.778 0.00 0.00 0.00 5.73
964 976 2.960170 CCGATATCCCCGACGGTC 59.040 66.667 13.94 2.02 40.42 4.79
966 978 2.960170 GATATCCCCGACGGTCCG 59.040 66.667 13.94 10.48 0.00 4.79
1003 1015 0.109086 CTCTTGTCTCCACGCGATGT 60.109 55.000 15.93 0.00 0.00 3.06
1005 1017 1.078759 CTTGTCTCCACGCGATGTCC 61.079 60.000 15.93 0.00 0.00 4.02
1255 1270 2.517402 CCTCCTCCTCCGACCTCG 60.517 72.222 0.00 0.00 39.44 4.63
1273 1288 0.456221 CGTCATCGACCTGTAAGCCT 59.544 55.000 0.00 0.00 39.71 4.58
1280 1300 1.677637 GACCTGTAAGCCTCCTCCCG 61.678 65.000 0.00 0.00 0.00 5.14
1353 1374 2.697751 TGTTTGGTCTGAAATGGTTGGG 59.302 45.455 0.00 0.00 0.00 4.12
1371 1396 2.361104 TTGATTGGGCGCAGGGAC 60.361 61.111 10.83 0.00 0.00 4.46
1486 1511 3.091545 CCCCTGATTGCTCTTGCTTTAA 58.908 45.455 0.00 0.00 40.48 1.52
1538 1564 4.269183 TGTGGTTTTGATCTGACTGTGTT 58.731 39.130 0.00 0.00 0.00 3.32
1599 1632 3.749064 GCGGAGGAGCTCGACACA 61.749 66.667 7.83 0.00 0.00 3.72
1780 1825 7.466746 AGCTGTACCATTGATTTTTGTATGT 57.533 32.000 0.00 0.00 0.00 2.29
1831 1883 5.752955 ACCATGTTTTGAGCATTTGTGTTAC 59.247 36.000 0.00 0.00 0.00 2.50
1847 1899 3.871594 GTGTTACGGATTCTTCTCATGGG 59.128 47.826 0.00 0.00 0.00 4.00
1858 1910 1.739929 CTCATGGGTTGCGTGCGTA 60.740 57.895 0.00 0.00 0.00 4.42
1881 1933 3.055602 AGCATCAGTGTACATCTTCTGCA 60.056 43.478 19.48 0.00 0.00 4.41
1895 1947 3.686241 TCTTCTGCATATGTTGTGACAGC 59.314 43.478 4.29 0.00 39.58 4.40
1915 1967 5.466393 ACAGCCATTTTTCTTACAAATGTGC 59.534 36.000 0.00 7.36 39.18 4.57
1951 2003 7.975058 TGTCTTATTGTGCCATTTGACATATTG 59.025 33.333 0.00 0.00 0.00 1.90
1954 2007 9.368674 CTTATTGTGCCATTTGACATATTGAAA 57.631 29.630 0.00 0.00 0.00 2.69
2012 2065 2.271944 ACAAGCTTGTCCTTACACCC 57.728 50.000 26.36 0.00 36.50 4.61
2092 2145 4.098914 TGGTGAGTAATGCTCCACTTTT 57.901 40.909 0.00 0.00 43.48 2.27
2138 2191 1.740025 GTGATTCACTGCTTGCCTACC 59.260 52.381 9.59 0.00 0.00 3.18
2139 2192 1.350684 TGATTCACTGCTTGCCTACCA 59.649 47.619 0.00 0.00 0.00 3.25
2248 2408 3.436704 AGATGCATTTGTAAGGTCACACG 59.563 43.478 0.00 0.00 0.00 4.49
2251 2411 2.350388 GCATTTGTAAGGTCACACGTGG 60.350 50.000 21.57 9.11 0.00 4.94
2265 2425 2.037251 ACACGTGGTCTTTCTGTGCTAT 59.963 45.455 21.57 0.00 33.96 2.97
2359 2565 5.643348 TGTTGTGCTCAATCCTATTACTGTG 59.357 40.000 4.26 0.00 35.92 3.66
2365 2571 4.780815 TCAATCCTATTACTGTGCCTTGG 58.219 43.478 0.00 0.00 0.00 3.61
2383 2589 4.761739 CCTTGGTTGAAGATAAGCAACTCA 59.238 41.667 0.00 0.00 41.50 3.41
2384 2590 5.416952 CCTTGGTTGAAGATAAGCAACTCAT 59.583 40.000 0.00 0.00 41.50 2.90
2499 2709 5.047021 TGTCCTGATCTTGAGGTACTTCTTG 60.047 44.000 6.54 0.00 41.55 3.02
2678 2888 5.188327 TCATTCGGAGACTACATGCTTAG 57.812 43.478 0.00 0.00 34.32 2.18
2683 2893 6.710597 TCGGAGACTACATGCTTAGTAATT 57.289 37.500 0.00 0.00 32.17 1.40
2737 2947 8.941127 GCTTGCAACAGCTATATTATTAGAAC 57.059 34.615 3.04 0.00 36.79 3.01
2747 2957 8.979574 AGCTATATTATTAGAACGTGCTTGTTC 58.020 33.333 0.00 12.04 46.78 3.18
2762 2972 1.917872 TGTTCCCTGTATTTGTGGCC 58.082 50.000 0.00 0.00 0.00 5.36
2790 3000 5.447818 GCAAATCCAGGTTTTCTGTCTATCG 60.448 44.000 0.00 0.00 41.83 2.92
2981 3191 7.975616 GTGCATTCATGATAGGTTTATGTGTTT 59.024 33.333 0.00 0.00 0.00 2.83
2982 3192 7.975058 TGCATTCATGATAGGTTTATGTGTTTG 59.025 33.333 0.00 0.00 0.00 2.93
2983 3193 7.436080 GCATTCATGATAGGTTTATGTGTTTGG 59.564 37.037 0.00 0.00 0.00 3.28
2984 3194 6.449635 TCATGATAGGTTTATGTGTTTGGC 57.550 37.500 0.00 0.00 0.00 4.52
3039 3249 0.457337 GCGGATTCTGCAGCCTTTTG 60.457 55.000 9.47 0.00 0.00 2.44
3236 3450 5.964758 TGTAAATTTGGCCTAAATGCAGAG 58.035 37.500 3.32 0.00 38.93 3.35
3289 3503 6.878923 ACGATATTCTTCATGTTTTCTGGTCA 59.121 34.615 0.00 0.00 0.00 4.02
3328 3542 5.538053 TGCCACATTAGAAGGAAAAATGTCA 59.462 36.000 0.00 0.00 40.83 3.58
3335 3549 8.792633 CATTAGAAGGAAAAATGTCAAGTGGTA 58.207 33.333 0.00 0.00 0.00 3.25
3343 3557 7.648112 GGAAAAATGTCAAGTGGTAAAGAAGAC 59.352 37.037 0.00 0.00 0.00 3.01
3353 3567 5.012561 AGTGGTAAAGAAGACTCTGCTTCAT 59.987 40.000 0.00 0.00 45.21 2.57
3396 3613 2.306847 TGGCAGGGAAGAACTTTTGAC 58.693 47.619 0.00 0.00 0.00 3.18
3439 3659 1.550524 TCTATCGCAGCACAAAGGACT 59.449 47.619 0.00 0.00 0.00 3.85
3812 4032 5.649831 GTCCTGGAGCAGATTTACAAAATCT 59.350 40.000 8.70 8.70 37.47 2.40
4023 4243 3.217599 TGTCACAGACGATGAAGTAGC 57.782 47.619 0.00 0.00 34.95 3.58
4029 4249 3.741344 ACAGACGATGAAGTAGCAACAAC 59.259 43.478 0.00 0.00 0.00 3.32
4034 4254 4.211374 ACGATGAAGTAGCAACAACAGAAC 59.789 41.667 0.00 0.00 0.00 3.01
4043 4266 2.287009 GCAACAACAGAACCTACTGCAC 60.287 50.000 0.00 0.00 41.06 4.57
4090 4313 1.088340 CAGCTGACGAATCTGGCAGG 61.088 60.000 15.73 0.21 0.00 4.85
4099 4322 0.616111 AATCTGGCAGGGACGACTCT 60.616 55.000 15.73 0.00 0.00 3.24
4115 4338 4.049869 CGACTCTGATGAACAGGATGATG 58.950 47.826 0.00 0.00 45.76 3.07
4116 4339 3.806380 ACTCTGATGAACAGGATGATGC 58.194 45.455 0.00 0.00 45.76 3.91
4153 4376 0.607112 TGAGGCAGCTCTTGAGTGAG 59.393 55.000 0.00 0.00 37.16 3.51
4165 4388 3.648009 CTTGAGTGAGCTCGAGTCTTTT 58.352 45.455 15.13 0.00 44.52 2.27
4179 4402 0.539438 TCTTTTGACTTGGCCGCCAT 60.539 50.000 14.30 0.00 31.53 4.40
4189 4412 2.423446 GCCGCCATCGAAGGATCT 59.577 61.111 11.67 0.00 38.10 2.75
4190 4413 1.958205 GCCGCCATCGAAGGATCTG 60.958 63.158 11.67 0.00 38.10 2.90
4208 4431 1.471684 CTGATGCCACTGGAAAGAAGC 59.528 52.381 0.00 0.00 0.00 3.86
4230 4453 3.583383 GCACCAGGCATCACAGAC 58.417 61.111 0.00 0.00 43.97 3.51
4246 4469 1.598130 GACGCAGCACAGGAAACCT 60.598 57.895 0.00 0.00 0.00 3.50
4297 4520 1.815003 CAACGATGGCAGCGATGGA 60.815 57.895 33.22 0.00 0.00 3.41
4335 4558 1.701031 TTCCAGAAGGCCACCGTCAA 61.701 55.000 5.01 0.00 34.53 3.18
4342 4565 1.520787 GGCCACCGTCAATACTCCG 60.521 63.158 0.00 0.00 0.00 4.63
4390 4613 1.379916 CCAGTGTCCCAAGCATCCA 59.620 57.895 0.00 0.00 0.00 3.41
4397 4620 2.364970 TGTCCCAAGCATCCAAAACAAG 59.635 45.455 0.00 0.00 0.00 3.16
4493 4721 3.123620 CCGCTTGCTCTGGCTGTC 61.124 66.667 0.00 0.00 39.59 3.51
4509 4737 3.777556 TCTGCCGACTGCTGAAGA 58.222 55.556 0.00 0.00 43.93 2.87
4511 4739 0.610174 TCTGCCGACTGCTGAAGATT 59.390 50.000 0.00 0.00 43.93 2.40
4512 4740 0.725686 CTGCCGACTGCTGAAGATTG 59.274 55.000 0.00 0.00 41.11 2.67
4514 4742 1.160137 GCCGACTGCTGAAGATTGTT 58.840 50.000 0.00 0.00 36.87 2.83
4516 4744 2.413371 GCCGACTGCTGAAGATTGTTTC 60.413 50.000 0.00 0.00 36.87 2.78
4517 4745 3.070018 CCGACTGCTGAAGATTGTTTCT 58.930 45.455 0.00 0.00 35.70 2.52
4575 4857 7.194607 CAGAGATTGCCGTTGTGAATATAAT 57.805 36.000 0.00 0.00 0.00 1.28
4644 4928 9.177304 CAACAATCGACGTAACTATACATATGT 57.823 33.333 13.93 13.93 32.02 2.29
4690 4984 4.426736 TCAGGCTGCTGATCATTATTCA 57.573 40.909 10.34 0.00 0.00 2.57
4761 5495 3.241741 GCGCATGGATTTTCACATTTTCG 60.242 43.478 0.30 0.00 0.00 3.46
4763 5497 4.244862 GCATGGATTTTCACATTTTCGGT 58.755 39.130 0.00 0.00 0.00 4.69
4764 5498 4.091800 GCATGGATTTTCACATTTTCGGTG 59.908 41.667 0.00 0.00 37.60 4.94
4766 5500 5.119931 TGGATTTTCACATTTTCGGTGAG 57.880 39.130 0.00 0.00 45.20 3.51
4895 5635 7.977789 TGTGTAGATTCAGCATTTCAAGTTA 57.022 32.000 0.00 0.00 0.00 2.24
4907 5647 8.697067 CAGCATTTCAAGTTACATTTTGAAGAG 58.303 33.333 0.73 0.18 42.35 2.85
4924 5664 9.814899 TTTTGAAGAGAAAGTTATTTCAATGCA 57.185 25.926 0.00 0.00 46.10 3.96
4928 5668 9.683069 GAAGAGAAAGTTATTTCAATGCAAGAA 57.317 29.630 0.00 0.00 46.10 2.52
4934 5674 9.985730 AAAGTTATTTCAATGCAAGAAATGAGA 57.014 25.926 27.42 16.68 43.44 3.27
4935 5675 9.985730 AAGTTATTTCAATGCAAGAAATGAGAA 57.014 25.926 27.42 17.41 43.44 2.87
4936 5676 9.985730 AGTTATTTCAATGCAAGAAATGAGAAA 57.014 25.926 27.42 17.17 43.44 2.52
4944 5686 9.938670 CAATGCAAGAAATGAGAAAATTGAAAA 57.061 25.926 0.00 0.00 0.00 2.29
4967 5709 8.488651 AAATTGAAAATGCATTCTCTCATTCC 57.511 30.769 13.38 0.00 32.27 3.01
4969 5711 6.203808 TGAAAATGCATTCTCTCATTCCAG 57.796 37.500 13.38 0.00 32.27 3.86
4972 5714 5.831702 AATGCATTCTCTCATTCCAGTTC 57.168 39.130 5.99 0.00 0.00 3.01
4974 5716 2.948315 GCATTCTCTCATTCCAGTTCCC 59.052 50.000 0.00 0.00 0.00 3.97
4975 5717 3.549794 CATTCTCTCATTCCAGTTCCCC 58.450 50.000 0.00 0.00 0.00 4.81
4977 5719 3.776731 TCTCTCATTCCAGTTCCCCTA 57.223 47.619 0.00 0.00 0.00 3.53
4978 5720 4.074799 TCTCTCATTCCAGTTCCCCTAA 57.925 45.455 0.00 0.00 0.00 2.69
4979 5721 4.435137 TCTCTCATTCCAGTTCCCCTAAA 58.565 43.478 0.00 0.00 0.00 1.85
4980 5722 4.225267 TCTCTCATTCCAGTTCCCCTAAAC 59.775 45.833 0.00 0.00 0.00 2.01
5029 5803 8.534496 TGTAATCAGTCATTTGATCTTCTCTCA 58.466 33.333 0.00 0.00 36.81 3.27
5082 5865 4.502950 GCCCATTGTTGTCATTTCCAAGAA 60.503 41.667 0.00 0.00 30.86 2.52
5086 5869 3.963665 TGTTGTCATTTCCAAGAAAGCG 58.036 40.909 0.00 0.00 0.00 4.68
5087 5870 3.629855 TGTTGTCATTTCCAAGAAAGCGA 59.370 39.130 0.00 0.00 0.00 4.93
5088 5871 4.097135 TGTTGTCATTTCCAAGAAAGCGAA 59.903 37.500 0.00 0.00 0.00 4.70
5108 5891 2.284276 CCAATGGTGGCCATGCACA 61.284 57.895 9.72 6.80 44.40 4.57
5110 5893 1.533513 AATGGTGGCCATGCACACA 60.534 52.632 9.72 1.92 44.40 3.72
5216 6004 1.589716 GCTGCTCCGCCTTCACATTT 61.590 55.000 0.00 0.00 0.00 2.32
5224 6012 1.136252 CGCCTTCACATTTCACACTCG 60.136 52.381 0.00 0.00 0.00 4.18
5239 6027 3.006110 CACACTCGAACCCCTACTTAACA 59.994 47.826 0.00 0.00 0.00 2.41
5241 6029 3.992427 CACTCGAACCCCTACTTAACAAC 59.008 47.826 0.00 0.00 0.00 3.32
5242 6030 3.007290 ACTCGAACCCCTACTTAACAACC 59.993 47.826 0.00 0.00 0.00 3.77
5249 6037 3.073356 CCCCTACTTAACAACCACCTTCA 59.927 47.826 0.00 0.00 0.00 3.02
5257 6045 1.278127 ACAACCACCTTCATCTACCCG 59.722 52.381 0.00 0.00 0.00 5.28
5260 6048 1.515954 CACCTTCATCTACCCGCGT 59.484 57.895 4.92 0.00 0.00 6.01
5266 6054 0.454600 TCATCTACCCGCGTTCAGAC 59.545 55.000 4.92 0.00 0.00 3.51
5284 6072 1.127567 ACTTCCTACCCACAGCAGCA 61.128 55.000 0.00 0.00 0.00 4.41
5289 6077 1.340405 CCTACCCACAGCAGCAAGAAT 60.340 52.381 0.00 0.00 0.00 2.40
5290 6078 2.012673 CTACCCACAGCAGCAAGAATC 58.987 52.381 0.00 0.00 0.00 2.52
5291 6079 0.610232 ACCCACAGCAGCAAGAATCC 60.610 55.000 0.00 0.00 0.00 3.01
5292 6080 0.609957 CCCACAGCAGCAAGAATCCA 60.610 55.000 0.00 0.00 0.00 3.41
5293 6081 1.250328 CCACAGCAGCAAGAATCCAA 58.750 50.000 0.00 0.00 0.00 3.53
5294 6082 1.068055 CCACAGCAGCAAGAATCCAAC 60.068 52.381 0.00 0.00 0.00 3.77
5295 6083 1.884579 CACAGCAGCAAGAATCCAACT 59.115 47.619 0.00 0.00 0.00 3.16
5296 6084 2.095364 CACAGCAGCAAGAATCCAACTC 60.095 50.000 0.00 0.00 0.00 3.01
5297 6085 1.471684 CAGCAGCAAGAATCCAACTCC 59.528 52.381 0.00 0.00 0.00 3.85
5298 6086 0.813821 GCAGCAAGAATCCAACTCCC 59.186 55.000 0.00 0.00 0.00 4.30
5299 6087 1.887956 GCAGCAAGAATCCAACTCCCA 60.888 52.381 0.00 0.00 0.00 4.37
5300 6088 1.815003 CAGCAAGAATCCAACTCCCAC 59.185 52.381 0.00 0.00 0.00 4.61
5301 6089 1.425066 AGCAAGAATCCAACTCCCACA 59.575 47.619 0.00 0.00 0.00 4.17
5302 6090 1.541588 GCAAGAATCCAACTCCCACAC 59.458 52.381 0.00 0.00 0.00 3.82
5303 6091 2.862541 CAAGAATCCAACTCCCACACA 58.137 47.619 0.00 0.00 0.00 3.72
5304 6092 2.554032 CAAGAATCCAACTCCCACACAC 59.446 50.000 0.00 0.00 0.00 3.82
5305 6093 2.057922 AGAATCCAACTCCCACACACT 58.942 47.619 0.00 0.00 0.00 3.55
5306 6094 2.039084 AGAATCCAACTCCCACACACTC 59.961 50.000 0.00 0.00 0.00 3.51
5307 6095 1.434188 ATCCAACTCCCACACACTCA 58.566 50.000 0.00 0.00 0.00 3.41
5308 6096 1.434188 TCCAACTCCCACACACTCAT 58.566 50.000 0.00 0.00 0.00 2.90
5309 6097 1.072173 TCCAACTCCCACACACTCATG 59.928 52.381 0.00 0.00 0.00 3.07
5310 6098 1.202806 CCAACTCCCACACACTCATGT 60.203 52.381 0.00 0.00 40.80 3.21
5311 6099 2.146342 CAACTCCCACACACTCATGTC 58.854 52.381 0.00 0.00 36.72 3.06
5312 6100 1.423584 ACTCCCACACACTCATGTCA 58.576 50.000 0.00 0.00 36.72 3.58
5313 6101 1.768275 ACTCCCACACACTCATGTCAA 59.232 47.619 0.00 0.00 36.72 3.18
5314 6102 2.172505 ACTCCCACACACTCATGTCAAA 59.827 45.455 0.00 0.00 36.72 2.69
5315 6103 2.549754 CTCCCACACACTCATGTCAAAC 59.450 50.000 0.00 0.00 36.72 2.93
5316 6104 1.608590 CCCACACACTCATGTCAAACC 59.391 52.381 0.00 0.00 36.72 3.27
5317 6105 2.575532 CCACACACTCATGTCAAACCT 58.424 47.619 0.00 0.00 36.72 3.50
5318 6106 2.549754 CCACACACTCATGTCAAACCTC 59.450 50.000 0.00 0.00 36.72 3.85
5319 6107 3.470709 CACACACTCATGTCAAACCTCT 58.529 45.455 0.00 0.00 36.72 3.69
5320 6108 3.496130 CACACACTCATGTCAAACCTCTC 59.504 47.826 0.00 0.00 36.72 3.20
5321 6109 3.134623 ACACACTCATGTCAAACCTCTCA 59.865 43.478 0.00 0.00 36.72 3.27
5322 6110 4.202398 ACACACTCATGTCAAACCTCTCAT 60.202 41.667 0.00 0.00 36.72 2.90
5323 6111 4.391216 CACACTCATGTCAAACCTCTCATC 59.609 45.833 0.00 0.00 36.72 2.92
5324 6112 3.937706 CACTCATGTCAAACCTCTCATCC 59.062 47.826 0.00 0.00 0.00 3.51
5325 6113 3.584406 ACTCATGTCAAACCTCTCATCCA 59.416 43.478 0.00 0.00 0.00 3.41
5326 6114 4.226846 ACTCATGTCAAACCTCTCATCCAT 59.773 41.667 0.00 0.00 0.00 3.41
5327 6115 4.774124 TCATGTCAAACCTCTCATCCATC 58.226 43.478 0.00 0.00 0.00 3.51
5328 6116 4.225717 TCATGTCAAACCTCTCATCCATCA 59.774 41.667 0.00 0.00 0.00 3.07
5329 6117 4.639078 TGTCAAACCTCTCATCCATCAA 57.361 40.909 0.00 0.00 0.00 2.57
5330 6118 4.582869 TGTCAAACCTCTCATCCATCAAG 58.417 43.478 0.00 0.00 0.00 3.02
5331 6119 3.376546 GTCAAACCTCTCATCCATCAAGC 59.623 47.826 0.00 0.00 0.00 4.01
5332 6120 2.686915 CAAACCTCTCATCCATCAAGCC 59.313 50.000 0.00 0.00 0.00 4.35
5333 6121 1.588239 ACCTCTCATCCATCAAGCCA 58.412 50.000 0.00 0.00 0.00 4.75
5334 6122 1.489649 ACCTCTCATCCATCAAGCCAG 59.510 52.381 0.00 0.00 0.00 4.85
5335 6123 1.595466 CTCTCATCCATCAAGCCAGC 58.405 55.000 0.00 0.00 0.00 4.85
5336 6124 0.182061 TCTCATCCATCAAGCCAGCC 59.818 55.000 0.00 0.00 0.00 4.85
5337 6125 0.106868 CTCATCCATCAAGCCAGCCA 60.107 55.000 0.00 0.00 0.00 4.75
5338 6126 0.554305 TCATCCATCAAGCCAGCCAT 59.446 50.000 0.00 0.00 0.00 4.40
5339 6127 0.673985 CATCCATCAAGCCAGCCATG 59.326 55.000 0.00 0.00 0.00 3.66
5359 6147 2.579738 GGACTGGTCCTCGCTTCC 59.420 66.667 12.09 0.00 46.16 3.46
5360 6148 2.182030 GACTGGTCCTCGCTTCCG 59.818 66.667 0.00 0.00 0.00 4.30
5361 6149 3.991536 GACTGGTCCTCGCTTCCGC 62.992 68.421 0.00 0.00 0.00 5.54
5362 6150 4.821589 CTGGTCCTCGCTTCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.150719 TGAAAGCCCTCCCCGTCAA 61.151 57.895 0.00 0.00 0.00 3.18
2 3 2.528127 TGAAAGCCCTCCCCGTCA 60.528 61.111 0.00 0.00 0.00 4.35
5 6 3.665675 CTCGTGAAAGCCCTCCCCG 62.666 68.421 0.00 0.00 0.00 5.73
60 61 1.815421 CCATTTCCGTGAGCCCTCG 60.815 63.158 0.00 0.00 0.00 4.63
62 63 1.299976 GTCCATTTCCGTGAGCCCT 59.700 57.895 0.00 0.00 0.00 5.19
88 89 1.319614 GCCCATTGTACGTGGCCAAT 61.320 55.000 7.24 0.12 37.94 3.16
107 108 1.073897 GGGCTATAGCAAGGGCCTG 59.926 63.158 25.53 2.19 43.62 4.85
108 109 3.581372 GGGCTATAGCAAGGGCCT 58.419 61.111 25.53 0.00 43.62 5.19
129 131 0.178068 CCCCATGAACTACCCAGACG 59.822 60.000 0.00 0.00 0.00 4.18
143 145 2.361610 CGTTCTGCAAGCCCCCAT 60.362 61.111 0.00 0.00 0.00 4.00
162 164 1.131303 TCCCTTCCAACCCATCACGT 61.131 55.000 0.00 0.00 0.00 4.49
202 204 4.920640 TCCAATCCTCACTCGATCTTAC 57.079 45.455 0.00 0.00 0.00 2.34
204 206 4.467795 TCTTTCCAATCCTCACTCGATCTT 59.532 41.667 0.00 0.00 0.00 2.40
212 214 8.567285 TTCTTTCTATTCTTTCCAATCCTCAC 57.433 34.615 0.00 0.00 0.00 3.51
231 233 5.648092 TCCTCCCGATTCTGATTTTTCTTTC 59.352 40.000 0.00 0.00 0.00 2.62
248 250 3.437049 GTCTCAGAAAACAAATCCTCCCG 59.563 47.826 0.00 0.00 0.00 5.14
250 252 4.315803 TCGTCTCAGAAAACAAATCCTCC 58.684 43.478 0.00 0.00 0.00 4.30
255 257 4.627467 CCTCGATCGTCTCAGAAAACAAAT 59.373 41.667 15.94 0.00 0.00 2.32
264 266 1.601663 GCATTCCCTCGATCGTCTCAG 60.602 57.143 15.94 4.71 0.00 3.35
267 269 0.824109 TTGCATTCCCTCGATCGTCT 59.176 50.000 15.94 0.00 0.00 4.18
270 272 1.797046 CATCTTGCATTCCCTCGATCG 59.203 52.381 9.36 9.36 0.00 3.69
285 287 6.628844 GCCCAAACATCTATCAAAAGCATCTT 60.629 38.462 0.00 0.00 0.00 2.40
309 311 1.131315 GTCATTTCCTTCCTTCGCAGC 59.869 52.381 0.00 0.00 0.00 5.25
337 339 9.606631 AGACTAAATCTCTAACTAAAATGGCAG 57.393 33.333 0.00 0.00 28.16 4.85
426 428 5.700373 TCTGCCAATAAAATCAAGTTTTGGC 59.300 36.000 15.32 15.32 45.31 4.52
483 485 2.362717 CCCACCAACACATTTAAACCGT 59.637 45.455 0.00 0.00 0.00 4.83
496 498 3.006430 CCACTGGTTTTTATCCCACCAAC 59.994 47.826 0.00 0.00 40.15 3.77
512 514 2.420967 CCGGTTAATACTTCCCCACTGG 60.421 54.545 0.00 0.00 0.00 4.00
518 520 3.181468 CCTCACTCCGGTTAATACTTCCC 60.181 52.174 0.00 0.00 0.00 3.97
524 526 1.679680 CTCGCCTCACTCCGGTTAATA 59.320 52.381 0.00 0.00 0.00 0.98
531 533 1.716826 GGTAGTCTCGCCTCACTCCG 61.717 65.000 0.00 0.00 0.00 4.63
533 535 1.174783 TTGGTAGTCTCGCCTCACTC 58.825 55.000 0.00 0.00 0.00 3.51
535 537 2.094182 TGAATTGGTAGTCTCGCCTCAC 60.094 50.000 0.00 0.00 0.00 3.51
536 538 2.166459 CTGAATTGGTAGTCTCGCCTCA 59.834 50.000 0.00 0.00 0.00 3.86
537 539 2.427453 TCTGAATTGGTAGTCTCGCCTC 59.573 50.000 0.00 0.00 0.00 4.70
538 540 2.166664 GTCTGAATTGGTAGTCTCGCCT 59.833 50.000 0.00 0.00 0.00 5.52
539 541 2.094182 TGTCTGAATTGGTAGTCTCGCC 60.094 50.000 0.00 0.00 0.00 5.54
540 542 3.232213 TGTCTGAATTGGTAGTCTCGC 57.768 47.619 0.00 0.00 0.00 5.03
541 543 6.796426 TCTAATGTCTGAATTGGTAGTCTCG 58.204 40.000 0.00 0.00 0.00 4.04
542 544 9.606631 ATTTCTAATGTCTGAATTGGTAGTCTC 57.393 33.333 0.00 0.00 0.00 3.36
567 569 8.193438 GCTGCCAATAAAATCAAGTTTCTCTAT 58.807 33.333 0.00 0.00 0.00 1.98
568 570 7.394359 AGCTGCCAATAAAATCAAGTTTCTCTA 59.606 33.333 0.00 0.00 0.00 2.43
569 571 6.210185 AGCTGCCAATAAAATCAAGTTTCTCT 59.790 34.615 0.00 0.00 0.00 3.10
570 572 6.393171 AGCTGCCAATAAAATCAAGTTTCTC 58.607 36.000 0.00 0.00 0.00 2.87
571 573 6.350629 AGCTGCCAATAAAATCAAGTTTCT 57.649 33.333 0.00 0.00 0.00 2.52
572 574 8.532977 TTTAGCTGCCAATAAAATCAAGTTTC 57.467 30.769 0.00 0.00 0.00 2.78
573 575 8.900983 TTTTAGCTGCCAATAAAATCAAGTTT 57.099 26.923 0.00 0.00 0.00 2.66
579 581 6.273071 ACCGATTTTAGCTGCCAATAAAATC 58.727 36.000 22.69 22.69 45.91 2.17
580 582 6.220726 ACCGATTTTAGCTGCCAATAAAAT 57.779 33.333 14.28 14.28 41.79 1.82
581 583 5.652994 ACCGATTTTAGCTGCCAATAAAA 57.347 34.783 0.00 7.48 35.85 1.52
582 584 5.652994 AACCGATTTTAGCTGCCAATAAA 57.347 34.783 0.00 0.00 0.00 1.40
583 585 5.652994 AAACCGATTTTAGCTGCCAATAA 57.347 34.783 0.00 0.00 0.00 1.40
584 586 6.761099 TTAAACCGATTTTAGCTGCCAATA 57.239 33.333 0.00 0.00 31.11 1.90
585 587 5.652994 TTAAACCGATTTTAGCTGCCAAT 57.347 34.783 0.00 0.00 31.11 3.16
586 588 5.455056 TTTAAACCGATTTTAGCTGCCAA 57.545 34.783 0.00 0.00 31.11 4.52
587 589 5.652994 ATTTAAACCGATTTTAGCTGCCA 57.347 34.783 0.00 0.00 31.11 4.92
588 590 7.023197 TCTATTTAAACCGATTTTAGCTGCC 57.977 36.000 0.00 0.00 31.11 4.85
589 591 8.342634 TGATCTATTTAAACCGATTTTAGCTGC 58.657 33.333 0.00 0.00 31.11 5.25
592 594 9.612620 CCATGATCTATTTAAACCGATTTTAGC 57.387 33.333 0.00 0.00 31.11 3.09
617 619 7.276878 CCAACACATTTAAACCGGATTTTATCC 59.723 37.037 9.46 0.00 46.22 2.59
618 620 7.815549 ACCAACACATTTAAACCGGATTTTATC 59.184 33.333 9.46 0.00 0.00 1.75
619 621 7.600752 CACCAACACATTTAAACCGGATTTTAT 59.399 33.333 9.46 0.00 0.00 1.40
620 622 6.924060 CACCAACACATTTAAACCGGATTTTA 59.076 34.615 9.46 0.00 0.00 1.52
621 623 5.755861 CACCAACACATTTAAACCGGATTTT 59.244 36.000 9.46 0.84 0.00 1.82
622 624 5.293560 CACCAACACATTTAAACCGGATTT 58.706 37.500 9.46 7.90 0.00 2.17
623 625 4.262249 CCACCAACACATTTAAACCGGATT 60.262 41.667 9.46 4.89 0.00 3.01
624 626 3.257127 CCACCAACACATTTAAACCGGAT 59.743 43.478 9.46 0.00 0.00 4.18
625 627 2.623889 CCACCAACACATTTAAACCGGA 59.376 45.455 9.46 0.00 0.00 5.14
626 628 2.288518 CCCACCAACACATTTAAACCGG 60.289 50.000 0.00 0.00 0.00 5.28
627 629 2.623889 TCCCACCAACACATTTAAACCG 59.376 45.455 0.00 0.00 0.00 4.44
628 630 4.882842 ATCCCACCAACACATTTAAACC 57.117 40.909 0.00 0.00 0.00 3.27
629 631 6.394809 CCTTATCCCACCAACACATTTAAAC 58.605 40.000 0.00 0.00 0.00 2.01
630 632 5.482175 CCCTTATCCCACCAACACATTTAAA 59.518 40.000 0.00 0.00 0.00 1.52
631 633 5.020132 CCCTTATCCCACCAACACATTTAA 58.980 41.667 0.00 0.00 0.00 1.52
632 634 4.292571 TCCCTTATCCCACCAACACATTTA 59.707 41.667 0.00 0.00 0.00 1.40
633 635 3.076785 TCCCTTATCCCACCAACACATTT 59.923 43.478 0.00 0.00 0.00 2.32
634 636 2.652348 TCCCTTATCCCACCAACACATT 59.348 45.455 0.00 0.00 0.00 2.71
635 637 2.283834 TCCCTTATCCCACCAACACAT 58.716 47.619 0.00 0.00 0.00 3.21
636 638 1.748732 TCCCTTATCCCACCAACACA 58.251 50.000 0.00 0.00 0.00 3.72
637 639 2.891191 TTCCCTTATCCCACCAACAC 57.109 50.000 0.00 0.00 0.00 3.32
638 640 2.922955 TCATTCCCTTATCCCACCAACA 59.077 45.455 0.00 0.00 0.00 3.33
639 641 3.662759 TCATTCCCTTATCCCACCAAC 57.337 47.619 0.00 0.00 0.00 3.77
640 642 4.898014 AATCATTCCCTTATCCCACCAA 57.102 40.909 0.00 0.00 0.00 3.67
641 643 5.399727 GGTTAATCATTCCCTTATCCCACCA 60.400 44.000 0.00 0.00 0.00 4.17
642 644 5.077564 GGTTAATCATTCCCTTATCCCACC 58.922 45.833 0.00 0.00 0.00 4.61
643 645 4.760204 CGGTTAATCATTCCCTTATCCCAC 59.240 45.833 0.00 0.00 0.00 4.61
644 646 4.202524 CCGGTTAATCATTCCCTTATCCCA 60.203 45.833 0.00 0.00 0.00 4.37
645 647 4.042435 TCCGGTTAATCATTCCCTTATCCC 59.958 45.833 0.00 0.00 0.00 3.85
646 648 5.221864 ACTCCGGTTAATCATTCCCTTATCC 60.222 44.000 0.00 0.00 0.00 2.59
647 649 5.701290 CACTCCGGTTAATCATTCCCTTATC 59.299 44.000 0.00 0.00 0.00 1.75
648 650 5.368523 TCACTCCGGTTAATCATTCCCTTAT 59.631 40.000 0.00 0.00 0.00 1.73
649 651 4.717778 TCACTCCGGTTAATCATTCCCTTA 59.282 41.667 0.00 0.00 0.00 2.69
650 652 3.521937 TCACTCCGGTTAATCATTCCCTT 59.478 43.478 0.00 0.00 0.00 3.95
651 653 3.112263 TCACTCCGGTTAATCATTCCCT 58.888 45.455 0.00 0.00 0.00 4.20
652 654 3.467803 CTCACTCCGGTTAATCATTCCC 58.532 50.000 0.00 0.00 0.00 3.97
653 655 3.467803 CCTCACTCCGGTTAATCATTCC 58.532 50.000 0.00 0.00 0.00 3.01
654 656 2.872858 GCCTCACTCCGGTTAATCATTC 59.127 50.000 0.00 0.00 0.00 2.67
655 657 2.741878 CGCCTCACTCCGGTTAATCATT 60.742 50.000 0.00 0.00 0.00 2.57
656 658 1.202533 CGCCTCACTCCGGTTAATCAT 60.203 52.381 0.00 0.00 0.00 2.45
657 659 0.174845 CGCCTCACTCCGGTTAATCA 59.825 55.000 0.00 0.00 0.00 2.57
658 660 0.458669 TCGCCTCACTCCGGTTAATC 59.541 55.000 0.00 0.00 0.00 1.75
659 661 0.460311 CTCGCCTCACTCCGGTTAAT 59.540 55.000 0.00 0.00 0.00 1.40
660 662 0.609957 TCTCGCCTCACTCCGGTTAA 60.610 55.000 0.00 0.00 0.00 2.01
661 663 1.001764 TCTCGCCTCACTCCGGTTA 60.002 57.895 0.00 0.00 0.00 2.85
662 664 2.282958 TCTCGCCTCACTCCGGTT 60.283 61.111 0.00 0.00 0.00 4.44
663 665 2.194388 TAGTCTCGCCTCACTCCGGT 62.194 60.000 0.00 0.00 0.00 5.28
664 666 1.451567 TAGTCTCGCCTCACTCCGG 60.452 63.158 0.00 0.00 0.00 5.14
665 667 1.716826 GGTAGTCTCGCCTCACTCCG 61.717 65.000 0.00 0.00 0.00 4.63
666 668 0.680280 TGGTAGTCTCGCCTCACTCC 60.680 60.000 0.00 0.00 0.00 3.85
667 669 1.135344 GTTGGTAGTCTCGCCTCACTC 60.135 57.143 0.00 0.00 0.00 3.51
668 670 0.889306 GTTGGTAGTCTCGCCTCACT 59.111 55.000 0.00 0.00 0.00 3.41
669 671 0.889306 AGTTGGTAGTCTCGCCTCAC 59.111 55.000 0.00 0.00 0.00 3.51
706 708 6.822676 CCAGTTTCAAATCTCTGCTCTAATCT 59.177 38.462 0.00 0.00 0.00 2.40
707 709 6.458070 GCCAGTTTCAAATCTCTGCTCTAATC 60.458 42.308 0.00 0.00 0.00 1.75
708 710 5.356470 GCCAGTTTCAAATCTCTGCTCTAAT 59.644 40.000 0.00 0.00 0.00 1.73
710 712 4.019860 AGCCAGTTTCAAATCTCTGCTCTA 60.020 41.667 0.00 0.00 0.00 2.43
711 713 3.080319 GCCAGTTTCAAATCTCTGCTCT 58.920 45.455 0.00 0.00 0.00 4.09
713 715 2.818432 CAGCCAGTTTCAAATCTCTGCT 59.182 45.455 0.00 0.00 0.00 4.24
776 778 4.459089 GTGAGCCTCTGACGCCCC 62.459 72.222 0.00 0.00 0.00 5.80
832 834 4.082895 CGACGAAGAAGAGGAGAAAAGGTA 60.083 45.833 0.00 0.00 0.00 3.08
844 846 0.179171 GGACGATGCGACGAAGAAGA 60.179 55.000 0.00 0.00 37.03 2.87
845 847 0.179161 AGGACGATGCGACGAAGAAG 60.179 55.000 0.00 0.00 37.03 2.85
846 848 0.179171 GAGGACGATGCGACGAAGAA 60.179 55.000 0.00 0.00 37.03 2.52
896 898 0.903236 AGGGTTTTAGCGAGGAGGAC 59.097 55.000 0.00 0.00 0.00 3.85
1233 1248 4.056584 TCGGAGGAGGAGGCGGAA 62.057 66.667 0.00 0.00 0.00 4.30
1255 1270 1.202428 GGAGGCTTACAGGTCGATGAC 60.202 57.143 0.00 0.00 0.00 3.06
1273 1288 3.273654 ACTGGAGGGACGGGAGGA 61.274 66.667 0.00 0.00 0.00 3.71
1280 1300 1.270907 ACATGTCTCACTGGAGGGAC 58.729 55.000 0.00 0.00 41.69 4.46
1318 1338 2.169561 ACCAAACACCATTCCAACCAAC 59.830 45.455 0.00 0.00 0.00 3.77
1353 1374 2.361104 TCCCTGCGCCCAATCAAC 60.361 61.111 4.18 0.00 0.00 3.18
1429 1454 2.363975 CCCCCAGGCTGTTAGCGTA 61.364 63.158 14.43 0.00 43.62 4.42
1434 1459 1.464395 TGGAACCCCCAGGCTGTTA 60.464 57.895 14.43 0.00 40.82 2.41
1486 1511 9.520204 CTAATGAACTCAAAACAACAGAACAAT 57.480 29.630 0.00 0.00 0.00 2.71
1538 1564 2.203408 TGCAATCACGGGCCACAA 60.203 55.556 4.39 0.00 0.00 3.33
1599 1632 3.941657 GAACGCCTGCCTCTCGCTT 62.942 63.158 0.00 0.00 38.78 4.68
1681 1718 8.980481 AATTCTCTTCAAACTAGAAAGTTCCA 57.020 30.769 0.00 0.00 45.37 3.53
1780 1825 9.270707 ACTACTACCAAATACCATTACCAGTTA 57.729 33.333 0.00 0.00 0.00 2.24
1831 1883 1.672881 GCAACCCATGAGAAGAATCCG 59.327 52.381 0.00 0.00 0.00 4.18
1858 1910 3.937706 GCAGAAGATGTACACTGATGCTT 59.062 43.478 13.74 4.55 32.90 3.91
1881 1933 6.594788 AGAAAAATGGCTGTCACAACATAT 57.405 33.333 0.00 0.00 34.13 1.78
1895 1947 5.697633 AGCAGCACATTTGTAAGAAAAATGG 59.302 36.000 12.14 4.31 45.29 3.16
1915 1967 3.818387 CACAATAAGACACAGCAAGCAG 58.182 45.455 0.00 0.00 0.00 4.24
2012 2065 5.063186 CCAGATGTCAATGTTCTTCTCGAAG 59.937 44.000 0.22 0.22 39.71 3.79
2092 2145 0.330941 TATGGGTGACAATGGCAGCA 59.669 50.000 20.60 6.74 35.57 4.41
2138 2191 3.131709 ACAGTTGGGATCACAAGACTG 57.868 47.619 22.68 22.68 33.28 3.51
2139 2192 3.864789 AACAGTTGGGATCACAAGACT 57.135 42.857 11.59 3.13 0.00 3.24
2180 2233 2.154462 CACAGCGGATGGGATAAATCC 58.846 52.381 0.00 0.00 46.41 3.01
2181 2234 2.851195 ACACAGCGGATGGGATAAATC 58.149 47.619 0.88 0.00 35.10 2.17
2182 2235 3.297134 AACACAGCGGATGGGATAAAT 57.703 42.857 0.88 0.00 35.10 1.40
2183 2236 2.799126 AACACAGCGGATGGGATAAA 57.201 45.000 0.88 0.00 35.10 1.40
2186 2239 4.287067 AGAATATAACACAGCGGATGGGAT 59.713 41.667 0.88 0.00 35.10 3.85
2187 2240 3.646162 AGAATATAACACAGCGGATGGGA 59.354 43.478 0.88 0.00 35.10 4.37
2248 2408 5.874810 TCATTACATAGCACAGAAAGACCAC 59.125 40.000 0.00 0.00 0.00 4.16
2251 2411 5.500931 GCGTCATTACATAGCACAGAAAGAC 60.501 44.000 0.00 0.00 0.00 3.01
2312 2472 8.713708 ACAGAGTAGCATATTTACAGGATAGT 57.286 34.615 0.00 0.00 0.00 2.12
2359 2565 3.507622 AGTTGCTTATCTTCAACCAAGGC 59.492 43.478 0.00 0.00 42.46 4.35
2384 2590 9.481340 GTCAGTACTTCTGCATGATATTCATTA 57.519 33.333 0.00 0.00 43.32 1.90
2499 2709 7.448748 AACCAAATTACTACAGGAACATGAC 57.551 36.000 0.00 0.00 0.00 3.06
2541 2751 5.637810 GCTGCAATCATTTTGCTATGCATAT 59.362 36.000 6.92 0.00 45.13 1.78
2544 2754 3.118920 AGCTGCAATCATTTTGCTATGCA 60.119 39.130 11.18 0.00 45.13 3.96
2737 2947 2.552315 ACAAATACAGGGAACAAGCACG 59.448 45.455 0.00 0.00 0.00 5.34
2747 2957 1.094785 CTTCGGCCACAAATACAGGG 58.905 55.000 2.24 0.00 0.00 4.45
2762 2972 3.568538 CAGAAAACCTGGATTTGCTTCG 58.431 45.455 6.67 0.00 39.23 3.79
2790 3000 7.538575 AGGTTGAATTATGTATGTTTGCTCAC 58.461 34.615 0.00 0.00 0.00 3.51
2936 3146 8.565896 AATGCACAACACTAGATTCAGATTAA 57.434 30.769 0.00 0.00 0.00 1.40
2950 3160 4.970662 ACCTATCATGAATGCACAACAC 57.029 40.909 0.00 0.00 0.00 3.32
2981 3191 2.499289 ACAACAACTGATTTTGGTGCCA 59.501 40.909 0.80 0.00 46.45 4.92
2982 3192 3.177997 ACAACAACTGATTTTGGTGCC 57.822 42.857 0.80 0.00 46.45 5.01
2983 3193 4.048504 GGTACAACAACTGATTTTGGTGC 58.951 43.478 0.80 0.00 46.45 5.01
2986 3196 7.594758 CACATTAGGTACAACAACTGATTTTGG 59.405 37.037 0.00 0.00 0.00 3.28
3076 3286 5.528690 TCTCTTGTGTTCATCAAGTTCCTTG 59.471 40.000 5.74 0.00 42.25 3.61
3236 3450 8.181904 TCCTTGAAATAATCTGCCCATATTTC 57.818 34.615 9.44 9.44 42.36 2.17
3328 3542 4.965200 AGCAGAGTCTTCTTTACCACTT 57.035 40.909 0.00 0.00 0.00 3.16
3335 3549 5.480642 TCAGATGAAGCAGAGTCTTCTTT 57.519 39.130 6.49 0.00 42.15 2.52
3343 3557 6.070938 TGGTATCCATATCAGATGAAGCAGAG 60.071 42.308 0.00 0.00 0.00 3.35
3353 3567 8.874156 GCCATATATCTTGGTATCCATATCAGA 58.126 37.037 6.51 0.00 36.57 3.27
3396 3613 1.208614 GCTTCAGCTTGCAACCTCG 59.791 57.895 0.00 0.00 38.21 4.63
3439 3659 4.595781 TCTTGTTCCCCTTTACTAGCTGAA 59.404 41.667 0.00 0.00 0.00 3.02
3878 4098 2.407616 CCGAGACGCGCAGTATGA 59.592 61.111 5.73 0.00 38.34 2.15
4023 4243 2.290641 GGTGCAGTAGGTTCTGTTGTTG 59.709 50.000 0.00 0.00 37.70 3.33
4029 4249 0.035317 TGCTGGTGCAGTAGGTTCTG 59.965 55.000 0.00 0.00 45.31 3.02
4090 4313 1.819288 TCCTGTTCATCAGAGTCGTCC 59.181 52.381 0.00 0.00 46.27 4.79
4099 4322 3.688235 TGTTGCATCATCCTGTTCATCA 58.312 40.909 0.00 0.00 0.00 3.07
4115 4338 0.326264 ATGTCTGGACCTCCTGTTGC 59.674 55.000 0.00 0.00 36.48 4.17
4116 4339 1.625315 TCATGTCTGGACCTCCTGTTG 59.375 52.381 0.00 0.00 36.48 3.33
4153 4376 1.195674 GCCAAGTCAAAAGACTCGAGC 59.804 52.381 13.61 5.49 33.73 5.03
4165 4388 3.247056 TTCGATGGCGGCCAAGTCA 62.247 57.895 27.70 8.04 36.95 3.41
4179 4402 1.137675 CAGTGGCATCAGATCCTTCGA 59.862 52.381 0.00 0.00 0.00 3.71
4189 4412 1.202915 TGCTTCTTTCCAGTGGCATCA 60.203 47.619 3.51 0.00 0.00 3.07
4190 4413 1.471684 CTGCTTCTTTCCAGTGGCATC 59.528 52.381 3.51 0.00 31.75 3.91
4208 4431 2.360726 TGATGCCTGGTGCTGCTG 60.361 61.111 0.00 0.00 42.00 4.41
4230 4453 1.572085 CTGAGGTTTCCTGTGCTGCG 61.572 60.000 0.00 0.00 31.76 5.18
4246 4469 2.646175 CCGGTCCTTCTTCCGCTGA 61.646 63.158 0.00 0.00 44.63 4.26
4297 4520 2.924101 TCCCTTACCACCGGCGTT 60.924 61.111 6.01 0.00 0.00 4.84
4301 4524 1.196104 TGGAAGTCCCTTACCACCGG 61.196 60.000 0.00 0.00 35.38 5.28
4325 4548 0.804933 GTCGGAGTATTGACGGTGGC 60.805 60.000 0.00 0.00 0.00 5.01
4348 4571 1.803334 AAACATTTCCGCTCACGCTA 58.197 45.000 0.00 0.00 38.22 4.26
4390 4613 4.175516 CAACTGTGATGTGTGCTTGTTTT 58.824 39.130 0.00 0.00 0.00 2.43
4397 4620 0.662374 GCAGCAACTGTGATGTGTGC 60.662 55.000 0.00 0.00 43.30 4.57
4459 4685 5.637810 GCAAGCGGCTATATTATGTGTAGAA 59.362 40.000 1.35 0.00 40.25 2.10
4477 4703 2.047465 AGACAGCCAGAGCAAGCG 60.047 61.111 0.00 0.00 43.56 4.68
4500 4728 6.309712 TCTTCAAGAAACAATCTTCAGCAG 57.690 37.500 0.00 0.00 45.42 4.24
4508 4736 8.137437 TCAGGAAACAATCTTCAAGAAACAATC 58.863 33.333 0.00 0.00 0.00 2.67
4509 4737 8.010733 TCAGGAAACAATCTTCAAGAAACAAT 57.989 30.769 0.00 0.00 0.00 2.71
4511 4739 7.587037 ATCAGGAAACAATCTTCAAGAAACA 57.413 32.000 0.00 0.00 0.00 2.83
4514 4742 9.300681 ACATTATCAGGAAACAATCTTCAAGAA 57.699 29.630 0.00 0.00 0.00 2.52
4516 4744 8.517878 ACACATTATCAGGAAACAATCTTCAAG 58.482 33.333 0.00 0.00 0.00 3.02
4517 4745 8.408043 ACACATTATCAGGAAACAATCTTCAA 57.592 30.769 0.00 0.00 0.00 2.69
4575 4857 2.727123 ATCACAAGTCACAACCCACA 57.273 45.000 0.00 0.00 0.00 4.17
4805 5542 6.759356 TGCATGAATCATTCAATGAATGGAAC 59.241 34.615 29.06 20.94 46.43 3.62
4826 5566 3.749609 GGTACGTACTCCAAAGTTTGCAT 59.250 43.478 24.07 0.39 36.92 3.96
4867 5607 6.631971 TGAAATGCTGAATCTACACAAACA 57.368 33.333 0.00 0.00 0.00 2.83
4915 5655 9.327628 TCAATTTTCTCATTTCTTGCATTGAAA 57.672 25.926 14.83 14.83 37.74 2.69
4916 5656 8.890124 TCAATTTTCTCATTTCTTGCATTGAA 57.110 26.923 0.00 0.00 0.00 2.69
4921 5661 9.938670 CAATTTTCAATTTTCTCATTTCTTGCA 57.061 25.926 0.00 0.00 0.00 4.08
4937 5677 9.496873 TGAGAGAATGCATTTTCAATTTTCAAT 57.503 25.926 26.48 7.35 0.00 2.57
4938 5678 8.890124 TGAGAGAATGCATTTTCAATTTTCAA 57.110 26.923 26.48 7.90 0.00 2.69
4939 5679 9.496873 AATGAGAGAATGCATTTTCAATTTTCA 57.503 25.926 26.48 20.98 31.02 2.69
4940 5680 9.968743 GAATGAGAGAATGCATTTTCAATTTTC 57.031 29.630 26.48 19.19 35.05 2.29
4944 5686 7.093465 ACTGGAATGAGAGAATGCATTTTCAAT 60.093 33.333 26.48 18.13 35.05 2.57
4967 5709 6.014499 TGAGAGAAAGTAGTTTAGGGGAACTG 60.014 42.308 0.00 0.00 39.99 3.16
4969 5711 6.356186 TGAGAGAAAGTAGTTTAGGGGAAC 57.644 41.667 0.00 0.00 0.00 3.62
4972 5714 6.947464 TGAATGAGAGAAAGTAGTTTAGGGG 58.053 40.000 0.00 0.00 0.00 4.79
4979 5721 9.950496 ACATGTATTTGAATGAGAGAAAGTAGT 57.050 29.630 0.00 0.00 0.00 2.73
5000 5774 9.107177 GAGAAGATCAAATGACTGATTACATGT 57.893 33.333 2.69 2.69 36.15 3.21
5004 5778 8.939201 TGAGAGAAGATCAAATGACTGATTAC 57.061 34.615 0.00 0.00 36.15 1.89
5036 5814 6.077838 GCGTCTTCGTTTAAATGACTGATTT 58.922 36.000 9.67 0.00 37.43 2.17
5057 5835 1.272212 GGAAATGACAACAATGGGCGT 59.728 47.619 0.00 0.00 0.00 5.68
5108 5891 4.163078 TGTTGGGGTTCAAATTCAATGTGT 59.837 37.500 0.00 0.00 37.08 3.72
5110 5893 4.743348 GCTGTTGGGGTTCAAATTCAATGT 60.743 41.667 0.00 0.00 37.08 2.71
5161 5949 2.672996 ATGCGTTGGTGACTGGGC 60.673 61.111 0.00 0.00 0.00 5.36
5166 5954 4.759096 GGCGCATGCGTTGGTGAC 62.759 66.667 37.54 20.72 44.10 3.67
5204 5992 1.136252 CGAGTGTGAAATGTGAAGGCG 60.136 52.381 0.00 0.00 0.00 5.52
5216 6004 2.005370 AAGTAGGGGTTCGAGTGTGA 57.995 50.000 0.00 0.00 0.00 3.58
5224 6012 3.073503 AGGTGGTTGTTAAGTAGGGGTTC 59.926 47.826 0.00 0.00 0.00 3.62
5239 6027 0.252197 GCGGGTAGATGAAGGTGGTT 59.748 55.000 0.00 0.00 0.00 3.67
5241 6029 1.227263 CGCGGGTAGATGAAGGTGG 60.227 63.158 0.00 0.00 0.00 4.61
5242 6030 0.108329 AACGCGGGTAGATGAAGGTG 60.108 55.000 12.47 0.00 0.00 4.00
5249 6037 1.134560 GAAGTCTGAACGCGGGTAGAT 59.865 52.381 12.47 0.00 0.00 1.98
5257 6045 0.606604 TGGGTAGGAAGTCTGAACGC 59.393 55.000 0.00 0.00 0.00 4.84
5260 6048 1.623811 GCTGTGGGTAGGAAGTCTGAA 59.376 52.381 0.00 0.00 0.00 3.02
5266 6054 0.036732 TTGCTGCTGTGGGTAGGAAG 59.963 55.000 0.00 0.00 33.72 3.46
5284 6072 2.443255 AGTGTGTGGGAGTTGGATTCTT 59.557 45.455 0.00 0.00 0.00 2.52
5289 6077 1.072173 CATGAGTGTGTGGGAGTTGGA 59.928 52.381 0.00 0.00 0.00 3.53
5290 6078 1.202806 ACATGAGTGTGTGGGAGTTGG 60.203 52.381 0.00 0.00 37.14 3.77
5291 6079 2.146342 GACATGAGTGTGTGGGAGTTG 58.854 52.381 0.00 0.00 39.09 3.16
5292 6080 1.768275 TGACATGAGTGTGTGGGAGTT 59.232 47.619 0.00 0.00 39.09 3.01
5293 6081 1.423584 TGACATGAGTGTGTGGGAGT 58.576 50.000 0.00 0.00 39.09 3.85
5294 6082 2.549064 TTGACATGAGTGTGTGGGAG 57.451 50.000 0.00 0.00 39.09 4.30
5295 6083 2.571212 GTTTGACATGAGTGTGTGGGA 58.429 47.619 0.00 0.00 39.09 4.37
5296 6084 1.608590 GGTTTGACATGAGTGTGTGGG 59.391 52.381 0.00 0.00 39.09 4.61
5297 6085 2.549754 GAGGTTTGACATGAGTGTGTGG 59.450 50.000 0.00 0.00 39.09 4.17
5298 6086 3.470709 AGAGGTTTGACATGAGTGTGTG 58.529 45.455 0.00 0.00 39.09 3.82
5299 6087 3.134623 TGAGAGGTTTGACATGAGTGTGT 59.865 43.478 0.00 0.00 39.09 3.72
5300 6088 3.732212 TGAGAGGTTTGACATGAGTGTG 58.268 45.455 0.00 0.00 39.09 3.82
5301 6089 4.564406 GGATGAGAGGTTTGACATGAGTGT 60.564 45.833 0.00 0.00 42.49 3.55
5302 6090 3.937706 GGATGAGAGGTTTGACATGAGTG 59.062 47.826 0.00 0.00 0.00 3.51
5303 6091 3.584406 TGGATGAGAGGTTTGACATGAGT 59.416 43.478 0.00 0.00 0.00 3.41
5304 6092 4.212143 TGGATGAGAGGTTTGACATGAG 57.788 45.455 0.00 0.00 0.00 2.90
5305 6093 4.225717 TGATGGATGAGAGGTTTGACATGA 59.774 41.667 0.00 0.00 0.00 3.07
5306 6094 4.520179 TGATGGATGAGAGGTTTGACATG 58.480 43.478 0.00 0.00 0.00 3.21
5307 6095 4.849813 TGATGGATGAGAGGTTTGACAT 57.150 40.909 0.00 0.00 0.00 3.06
5308 6096 4.582869 CTTGATGGATGAGAGGTTTGACA 58.417 43.478 0.00 0.00 0.00 3.58
5309 6097 3.376546 GCTTGATGGATGAGAGGTTTGAC 59.623 47.826 0.00 0.00 0.00 3.18
5310 6098 3.614092 GCTTGATGGATGAGAGGTTTGA 58.386 45.455 0.00 0.00 0.00 2.69
5311 6099 2.686915 GGCTTGATGGATGAGAGGTTTG 59.313 50.000 0.00 0.00 0.00 2.93
5312 6100 2.309755 TGGCTTGATGGATGAGAGGTTT 59.690 45.455 0.00 0.00 0.00 3.27
5313 6101 1.918262 TGGCTTGATGGATGAGAGGTT 59.082 47.619 0.00 0.00 0.00 3.50
5314 6102 1.489649 CTGGCTTGATGGATGAGAGGT 59.510 52.381 0.00 0.00 0.00 3.85
5315 6103 1.814634 GCTGGCTTGATGGATGAGAGG 60.815 57.143 0.00 0.00 0.00 3.69
5316 6104 1.595466 GCTGGCTTGATGGATGAGAG 58.405 55.000 0.00 0.00 0.00 3.20
5317 6105 0.182061 GGCTGGCTTGATGGATGAGA 59.818 55.000 0.00 0.00 0.00 3.27
5318 6106 0.106868 TGGCTGGCTTGATGGATGAG 60.107 55.000 2.00 0.00 0.00 2.90
5319 6107 0.554305 ATGGCTGGCTTGATGGATGA 59.446 50.000 2.00 0.00 0.00 2.92
5320 6108 0.673985 CATGGCTGGCTTGATGGATG 59.326 55.000 11.04 0.00 0.00 3.51
5321 6109 0.469331 CCATGGCTGGCTTGATGGAT 60.469 55.000 17.04 0.00 38.10 3.41
5322 6110 1.076559 CCATGGCTGGCTTGATGGA 60.077 57.895 17.04 0.00 38.10 3.41
5323 6111 3.533720 CCATGGCTGGCTTGATGG 58.466 61.111 17.04 10.96 35.23 3.51
5332 6120 4.415150 ACCAGTCCGCCATGGCTG 62.415 66.667 33.07 27.27 40.45 4.85
5333 6121 4.101448 GACCAGTCCGCCATGGCT 62.101 66.667 33.07 13.87 40.45 4.75
5343 6131 2.182030 CGGAAGCGAGGACCAGTC 59.818 66.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.