Multiple sequence alignment - TraesCS5D01G037700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G037700 chr5D 100.000 3092 0 0 1 3092 36742127 36745218 0.000000e+00 5710.0
1 TraesCS5D01G037700 chr5A 92.226 2727 89 55 434 3092 25863380 25866051 0.000000e+00 3747.0
2 TraesCS5D01G037700 chr5B 91.564 2430 91 42 635 2999 27485990 27488370 0.000000e+00 3247.0
3 TraesCS5D01G037700 chr5B 86.577 149 10 1 438 576 27485541 27485689 4.130000e-34 156.0
4 TraesCS5D01G037700 chr5B 97.436 39 1 0 3032 3070 27488379 27488417 1.990000e-07 67.6
5 TraesCS5D01G037700 chr2D 76.686 845 173 19 1251 2083 299552071 299551239 6.080000e-122 448.0
6 TraesCS5D01G037700 chr2B 76.303 844 178 17 1251 2083 371562939 371562107 6.130000e-117 431.0
7 TraesCS5D01G037700 chr2A 76.123 846 176 19 1251 2083 374721652 374720820 1.330000e-113 420.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G037700 chr5D 36742127 36745218 3091 False 5710.000000 5710 100.000 1 3092 1 chr5D.!!$F1 3091
1 TraesCS5D01G037700 chr5A 25863380 25866051 2671 False 3747.000000 3747 92.226 434 3092 1 chr5A.!!$F1 2658
2 TraesCS5D01G037700 chr5B 27485541 27488417 2876 False 1156.866667 3247 91.859 438 3070 3 chr5B.!!$F1 2632
3 TraesCS5D01G037700 chr2D 299551239 299552071 832 True 448.000000 448 76.686 1251 2083 1 chr2D.!!$R1 832
4 TraesCS5D01G037700 chr2B 371562107 371562939 832 True 431.000000 431 76.303 1251 2083 1 chr2B.!!$R1 832
5 TraesCS5D01G037700 chr2A 374720820 374721652 832 True 420.000000 420 76.123 1251 2083 1 chr2A.!!$R1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.035739 AAGGGTTTGGCGACATACGT 59.964 50.0 5.73 0.00 42.43 3.57 F
345 346 0.036164 TCCTTCCGTCCCACAATGTG 59.964 55.0 6.37 6.37 0.00 3.21 F
346 347 0.036164 CCTTCCGTCCCACAATGTGA 59.964 55.0 15.91 0.00 35.23 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1644 0.170561 CGTGGACGTAGAGGTTGAGG 59.829 60.000 0.00 0.0 34.11 3.86 R
1506 1815 1.520342 GGAGAGCAGCGCGAAGAAT 60.520 57.895 12.10 0.0 0.00 2.40 R
2177 2499 3.944087 ACCTGATAGGACTTTGCAGAAC 58.056 45.455 1.13 0.0 37.67 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.416243 ACCAATAATAGGGTCGCCGA 58.584 50.000 0.00 0.00 29.34 5.54
20 21 1.764134 ACCAATAATAGGGTCGCCGAA 59.236 47.619 0.00 0.00 29.34 4.30
21 22 2.171027 ACCAATAATAGGGTCGCCGAAA 59.829 45.455 0.00 0.00 29.34 3.46
22 23 3.207778 CCAATAATAGGGTCGCCGAAAA 58.792 45.455 0.00 0.00 0.00 2.29
23 24 3.250040 CCAATAATAGGGTCGCCGAAAAG 59.750 47.826 0.00 0.00 0.00 2.27
24 25 2.607631 TAATAGGGTCGCCGAAAAGG 57.392 50.000 0.00 0.00 44.97 3.11
25 26 0.906775 AATAGGGTCGCCGAAAAGGA 59.093 50.000 0.00 0.00 45.00 3.36
26 27 0.177373 ATAGGGTCGCCGAAAAGGAC 59.823 55.000 0.00 0.00 45.00 3.85
27 28 1.186917 TAGGGTCGCCGAAAAGGACA 61.187 55.000 0.00 0.00 45.00 4.02
28 29 1.598685 GGGTCGCCGAAAAGGACAA 60.599 57.895 0.00 0.00 45.00 3.18
29 30 1.167781 GGGTCGCCGAAAAGGACAAA 61.168 55.000 0.00 0.00 45.00 2.83
30 31 0.040692 GGTCGCCGAAAAGGACAAAC 60.041 55.000 0.00 0.00 45.00 2.93
31 32 0.040692 GTCGCCGAAAAGGACAAACC 60.041 55.000 0.00 0.00 45.00 3.27
32 33 0.464013 TCGCCGAAAAGGACAAACCA 60.464 50.000 0.00 0.00 45.00 3.67
33 34 0.596082 CGCCGAAAAGGACAAACCAT 59.404 50.000 0.00 0.00 45.00 3.55
34 35 1.807742 CGCCGAAAAGGACAAACCATA 59.192 47.619 0.00 0.00 45.00 2.74
35 36 2.226912 CGCCGAAAAGGACAAACCATAA 59.773 45.455 0.00 0.00 45.00 1.90
36 37 3.304794 CGCCGAAAAGGACAAACCATAAA 60.305 43.478 0.00 0.00 45.00 1.40
37 38 4.617298 CGCCGAAAAGGACAAACCATAAAT 60.617 41.667 0.00 0.00 45.00 1.40
38 39 5.234752 GCCGAAAAGGACAAACCATAAATT 58.765 37.500 0.00 0.00 45.00 1.82
39 40 5.699001 GCCGAAAAGGACAAACCATAAATTT 59.301 36.000 0.00 0.00 45.00 1.82
40 41 6.869388 GCCGAAAAGGACAAACCATAAATTTA 59.131 34.615 0.00 0.00 45.00 1.40
41 42 7.062956 GCCGAAAAGGACAAACCATAAATTTAG 59.937 37.037 3.94 0.00 45.00 1.85
42 43 8.301002 CCGAAAAGGACAAACCATAAATTTAGA 58.699 33.333 3.94 0.00 45.00 2.10
43 44 9.341899 CGAAAAGGACAAACCATAAATTTAGAG 57.658 33.333 3.94 0.34 42.04 2.43
44 45 9.639601 GAAAAGGACAAACCATAAATTTAGAGG 57.360 33.333 14.69 14.69 42.04 3.69
45 46 8.721133 AAAGGACAAACCATAAATTTAGAGGT 57.279 30.769 15.72 15.72 42.04 3.85
46 47 7.939784 AGGACAAACCATAAATTTAGAGGTC 57.060 36.000 19.67 12.81 42.04 3.85
47 48 7.466804 AGGACAAACCATAAATTTAGAGGTCA 58.533 34.615 19.67 0.00 42.04 4.02
48 49 7.947890 AGGACAAACCATAAATTTAGAGGTCAA 59.052 33.333 19.67 0.00 42.04 3.18
49 50 8.581578 GGACAAACCATAAATTTAGAGGTCAAA 58.418 33.333 19.67 0.00 38.79 2.69
62 63 7.554959 TTAGAGGTCAAATATAGGGATCACC 57.445 40.000 0.00 0.00 40.67 4.02
63 64 5.476983 AGAGGTCAAATATAGGGATCACCA 58.523 41.667 0.00 0.00 43.89 4.17
64 65 5.308237 AGAGGTCAAATATAGGGATCACCAC 59.692 44.000 0.00 0.00 43.89 4.16
65 66 4.975147 AGGTCAAATATAGGGATCACCACA 59.025 41.667 0.00 0.00 43.89 4.17
66 67 5.431731 AGGTCAAATATAGGGATCACCACAA 59.568 40.000 0.00 0.00 43.89 3.33
67 68 6.069088 AGGTCAAATATAGGGATCACCACAAA 60.069 38.462 0.00 0.00 43.89 2.83
68 69 6.605594 GGTCAAATATAGGGATCACCACAAAA 59.394 38.462 0.00 0.00 43.89 2.44
69 70 7.123547 GGTCAAATATAGGGATCACCACAAAAA 59.876 37.037 0.00 0.00 43.89 1.94
70 71 8.190784 GTCAAATATAGGGATCACCACAAAAAG 58.809 37.037 0.00 0.00 43.89 2.27
71 72 8.112822 TCAAATATAGGGATCACCACAAAAAGA 58.887 33.333 0.00 0.00 43.89 2.52
72 73 8.748412 CAAATATAGGGATCACCACAAAAAGAA 58.252 33.333 0.00 0.00 43.89 2.52
73 74 8.893563 AATATAGGGATCACCACAAAAAGAAA 57.106 30.769 0.00 0.00 43.89 2.52
74 75 6.840780 ATAGGGATCACCACAAAAAGAAAG 57.159 37.500 0.00 0.00 43.89 2.62
75 76 3.897505 AGGGATCACCACAAAAAGAAAGG 59.102 43.478 0.00 0.00 43.89 3.11
76 77 3.641436 GGGATCACCACAAAAAGAAAGGT 59.359 43.478 0.00 0.00 39.85 3.50
77 78 4.262036 GGGATCACCACAAAAAGAAAGGTC 60.262 45.833 0.00 0.00 39.85 3.85
78 79 4.340950 GGATCACCACAAAAAGAAAGGTCA 59.659 41.667 0.00 0.00 35.97 4.02
79 80 5.011023 GGATCACCACAAAAAGAAAGGTCAT 59.989 40.000 0.00 0.00 35.97 3.06
80 81 5.514274 TCACCACAAAAAGAAAGGTCATC 57.486 39.130 0.00 0.00 0.00 2.92
81 82 5.200483 TCACCACAAAAAGAAAGGTCATCT 58.800 37.500 0.00 0.00 0.00 2.90
82 83 5.067674 TCACCACAAAAAGAAAGGTCATCTG 59.932 40.000 0.00 0.00 0.00 2.90
83 84 4.342092 ACCACAAAAAGAAAGGTCATCTGG 59.658 41.667 0.00 0.00 0.00 3.86
84 85 4.342092 CCACAAAAAGAAAGGTCATCTGGT 59.658 41.667 0.00 0.00 0.00 4.00
85 86 5.163416 CCACAAAAAGAAAGGTCATCTGGTT 60.163 40.000 0.00 0.00 0.00 3.67
86 87 6.340522 CACAAAAAGAAAGGTCATCTGGTTT 58.659 36.000 0.00 0.00 0.00 3.27
87 88 7.417342 CCACAAAAAGAAAGGTCATCTGGTTTA 60.417 37.037 0.00 0.00 0.00 2.01
88 89 7.649306 CACAAAAAGAAAGGTCATCTGGTTTAG 59.351 37.037 0.00 0.00 0.00 1.85
89 90 7.559897 ACAAAAAGAAAGGTCATCTGGTTTAGA 59.440 33.333 0.00 0.00 40.37 2.10
90 91 8.413229 CAAAAAGAAAGGTCATCTGGTTTAGAA 58.587 33.333 0.00 0.00 39.30 2.10
91 92 8.533569 AAAAGAAAGGTCATCTGGTTTAGAAA 57.466 30.769 0.00 0.00 39.30 2.52
92 93 7.511959 AAGAAAGGTCATCTGGTTTAGAAAC 57.488 36.000 0.00 0.00 39.30 2.78
107 108 7.406799 GTTTAGAAACCACAACCAAATCATG 57.593 36.000 0.00 0.00 32.82 3.07
108 109 6.423604 GTTTAGAAACCACAACCAAATCATGG 59.576 38.462 0.00 0.00 42.87 3.66
117 118 0.096976 CCAAATCATGGTGTCGACGC 59.903 55.000 20.76 20.76 44.85 5.19
118 119 0.247262 CAAATCATGGTGTCGACGCG 60.247 55.000 21.89 3.53 0.00 6.01
119 120 1.358725 AAATCATGGTGTCGACGCGG 61.359 55.000 21.89 14.09 0.00 6.46
143 144 6.300354 CGTAGCCTATTCAATAAGGGTTTG 57.700 41.667 0.00 0.00 33.82 2.93
144 145 5.238650 CGTAGCCTATTCAATAAGGGTTTGG 59.761 44.000 0.00 0.00 33.82 3.28
145 146 3.960755 AGCCTATTCAATAAGGGTTTGGC 59.039 43.478 0.00 0.00 37.15 4.52
146 147 3.243401 GCCTATTCAATAAGGGTTTGGCG 60.243 47.826 0.00 0.00 0.00 5.69
147 148 4.204012 CCTATTCAATAAGGGTTTGGCGA 58.796 43.478 0.00 0.00 0.00 5.54
148 149 4.036380 CCTATTCAATAAGGGTTTGGCGAC 59.964 45.833 0.00 0.00 0.00 5.19
149 150 2.570415 TCAATAAGGGTTTGGCGACA 57.430 45.000 0.00 0.00 39.83 4.35
150 151 3.080300 TCAATAAGGGTTTGGCGACAT 57.920 42.857 0.00 0.00 42.32 3.06
151 152 4.223556 TCAATAAGGGTTTGGCGACATA 57.776 40.909 0.00 0.00 42.32 2.29
152 153 3.942748 TCAATAAGGGTTTGGCGACATAC 59.057 43.478 2.84 2.84 42.32 2.39
153 154 2.012937 TAAGGGTTTGGCGACATACG 57.987 50.000 5.73 0.00 42.43 3.06
154 155 0.035739 AAGGGTTTGGCGACATACGT 59.964 50.000 5.73 0.00 42.43 3.57
155 156 0.035739 AGGGTTTGGCGACATACGTT 59.964 50.000 5.73 0.00 42.43 3.99
156 157 1.275856 AGGGTTTGGCGACATACGTTA 59.724 47.619 5.73 0.00 42.43 3.18
157 158 2.075338 GGGTTTGGCGACATACGTTAA 58.925 47.619 5.73 0.00 42.43 2.01
158 159 2.679336 GGGTTTGGCGACATACGTTAAT 59.321 45.455 5.73 0.00 42.43 1.40
159 160 3.127376 GGGTTTGGCGACATACGTTAATT 59.873 43.478 5.73 0.00 42.43 1.40
160 161 4.379708 GGGTTTGGCGACATACGTTAATTT 60.380 41.667 5.73 0.00 42.43 1.82
161 162 5.163774 GGGTTTGGCGACATACGTTAATTTA 60.164 40.000 5.73 0.00 42.43 1.40
162 163 6.458615 GGGTTTGGCGACATACGTTAATTTAT 60.459 38.462 5.73 0.00 42.43 1.40
163 164 6.630045 GGTTTGGCGACATACGTTAATTTATC 59.370 38.462 5.73 0.00 42.43 1.75
164 165 5.910637 TGGCGACATACGTTAATTTATCC 57.089 39.130 0.00 0.00 44.60 2.59
165 166 5.358090 TGGCGACATACGTTAATTTATCCA 58.642 37.500 0.00 0.00 44.60 3.41
166 167 5.992829 TGGCGACATACGTTAATTTATCCAT 59.007 36.000 0.00 0.00 44.60 3.41
167 168 6.146510 TGGCGACATACGTTAATTTATCCATC 59.853 38.462 0.00 0.00 44.60 3.51
168 169 6.401796 GGCGACATACGTTAATTTATCCATCC 60.402 42.308 0.00 0.00 44.60 3.51
169 170 6.146510 GCGACATACGTTAATTTATCCATCCA 59.853 38.462 0.00 0.00 44.60 3.41
170 171 7.148474 GCGACATACGTTAATTTATCCATCCAT 60.148 37.037 0.00 0.00 44.60 3.41
171 172 8.380644 CGACATACGTTAATTTATCCATCCATC 58.619 37.037 0.00 0.00 37.22 3.51
172 173 8.251750 ACATACGTTAATTTATCCATCCATCG 57.748 34.615 0.00 0.00 0.00 3.84
173 174 8.092068 ACATACGTTAATTTATCCATCCATCGA 58.908 33.333 0.00 0.00 0.00 3.59
174 175 9.098355 CATACGTTAATTTATCCATCCATCGAT 57.902 33.333 0.00 0.00 0.00 3.59
175 176 7.979444 ACGTTAATTTATCCATCCATCGATT 57.021 32.000 0.00 0.00 0.00 3.34
176 177 7.806690 ACGTTAATTTATCCATCCATCGATTG 58.193 34.615 0.00 0.00 0.00 2.67
187 188 1.660167 CATCGATTGGAAGAGCTGCA 58.340 50.000 1.02 0.00 0.00 4.41
188 189 2.011947 CATCGATTGGAAGAGCTGCAA 58.988 47.619 1.02 0.00 39.98 4.08
189 190 2.183478 TCGATTGGAAGAGCTGCAAA 57.817 45.000 1.02 0.00 39.03 3.68
190 191 2.503331 TCGATTGGAAGAGCTGCAAAA 58.497 42.857 1.02 0.00 39.03 2.44
191 192 2.884012 TCGATTGGAAGAGCTGCAAAAA 59.116 40.909 1.02 0.00 39.03 1.94
214 215 8.546597 AAAAGTATGAATTACATTTTGGCACC 57.453 30.769 0.00 0.00 40.07 5.01
215 216 6.220726 AGTATGAATTACATTTTGGCACCC 57.779 37.500 0.00 0.00 40.07 4.61
216 217 3.584406 TGAATTACATTTTGGCACCCG 57.416 42.857 0.00 0.00 0.00 5.28
217 218 2.267426 GAATTACATTTTGGCACCCGC 58.733 47.619 0.00 0.00 37.44 6.13
218 219 1.555967 ATTACATTTTGGCACCCGCT 58.444 45.000 0.00 0.00 38.60 5.52
219 220 0.885196 TTACATTTTGGCACCCGCTC 59.115 50.000 0.00 0.00 38.60 5.03
220 221 0.963355 TACATTTTGGCACCCGCTCC 60.963 55.000 0.00 0.00 38.60 4.70
221 222 1.978617 CATTTTGGCACCCGCTCCT 60.979 57.895 0.00 0.00 38.60 3.69
222 223 1.228862 ATTTTGGCACCCGCTCCTT 60.229 52.632 0.00 0.00 38.60 3.36
223 224 1.535204 ATTTTGGCACCCGCTCCTTG 61.535 55.000 0.00 0.00 38.60 3.61
227 228 3.064324 GCACCCGCTCCTTGCAAT 61.064 61.111 0.00 0.00 43.06 3.56
228 229 2.639327 GCACCCGCTCCTTGCAATT 61.639 57.895 0.00 0.00 43.06 2.32
229 230 1.508088 CACCCGCTCCTTGCAATTC 59.492 57.895 0.00 0.00 43.06 2.17
230 231 1.074775 ACCCGCTCCTTGCAATTCA 59.925 52.632 0.00 0.00 43.06 2.57
231 232 0.962356 ACCCGCTCCTTGCAATTCAG 60.962 55.000 0.00 0.00 43.06 3.02
232 233 1.138247 CCGCTCCTTGCAATTCAGC 59.862 57.895 0.00 6.96 43.06 4.26
233 234 1.588824 CCGCTCCTTGCAATTCAGCA 61.589 55.000 19.02 0.00 43.99 4.41
246 247 5.743398 TGCAATTCAGCAAGTAATAAATCGC 59.257 36.000 0.00 0.00 42.46 4.58
247 248 5.173854 GCAATTCAGCAAGTAATAAATCGCC 59.826 40.000 0.00 0.00 0.00 5.54
248 249 6.264832 CAATTCAGCAAGTAATAAATCGCCA 58.735 36.000 0.00 0.00 0.00 5.69
249 250 4.875544 TCAGCAAGTAATAAATCGCCAC 57.124 40.909 0.00 0.00 0.00 5.01
250 251 4.257731 TCAGCAAGTAATAAATCGCCACA 58.742 39.130 0.00 0.00 0.00 4.17
251 252 4.332543 TCAGCAAGTAATAAATCGCCACAG 59.667 41.667 0.00 0.00 0.00 3.66
252 253 3.627577 AGCAAGTAATAAATCGCCACAGG 59.372 43.478 0.00 0.00 0.00 4.00
253 254 3.377172 GCAAGTAATAAATCGCCACAGGT 59.623 43.478 0.00 0.00 0.00 4.00
254 255 4.142469 GCAAGTAATAAATCGCCACAGGTT 60.142 41.667 0.00 0.00 0.00 3.50
255 256 5.065474 GCAAGTAATAAATCGCCACAGGTTA 59.935 40.000 0.00 0.00 0.00 2.85
256 257 6.238648 GCAAGTAATAAATCGCCACAGGTTAT 60.239 38.462 0.00 0.00 0.00 1.89
257 258 6.861065 AGTAATAAATCGCCACAGGTTATG 57.139 37.500 0.00 0.00 0.00 1.90
258 259 6.354130 AGTAATAAATCGCCACAGGTTATGT 58.646 36.000 0.00 0.00 45.43 2.29
259 260 6.826741 AGTAATAAATCGCCACAGGTTATGTT 59.173 34.615 0.00 0.00 41.41 2.71
260 261 3.848272 AAATCGCCACAGGTTATGTTG 57.152 42.857 0.00 0.00 41.41 3.33
261 262 1.750193 ATCGCCACAGGTTATGTTGG 58.250 50.000 0.00 0.00 41.41 3.77
262 263 0.687920 TCGCCACAGGTTATGTTGGA 59.312 50.000 0.00 0.00 41.41 3.53
263 264 0.802494 CGCCACAGGTTATGTTGGAC 59.198 55.000 0.00 0.00 41.41 4.02
264 265 1.880221 CGCCACAGGTTATGTTGGACA 60.880 52.381 0.00 0.00 41.41 4.02
265 266 2.235016 GCCACAGGTTATGTTGGACAA 58.765 47.619 0.00 0.00 41.41 3.18
266 267 2.030274 GCCACAGGTTATGTTGGACAAC 60.030 50.000 8.19 8.19 41.41 3.32
267 268 3.486383 CCACAGGTTATGTTGGACAACT 58.514 45.455 15.37 4.95 41.41 3.16
268 269 4.647611 CCACAGGTTATGTTGGACAACTA 58.352 43.478 15.37 3.80 41.41 2.24
269 270 4.695455 CCACAGGTTATGTTGGACAACTAG 59.305 45.833 15.37 0.00 41.41 2.57
270 271 4.695455 CACAGGTTATGTTGGACAACTAGG 59.305 45.833 15.37 2.60 41.41 3.02
271 272 4.261801 CAGGTTATGTTGGACAACTAGGG 58.738 47.826 15.37 0.00 41.67 3.53
272 273 3.914435 AGGTTATGTTGGACAACTAGGGT 59.086 43.478 15.37 0.00 41.67 4.34
273 274 5.046159 CAGGTTATGTTGGACAACTAGGGTA 60.046 44.000 15.37 0.00 41.67 3.69
274 275 5.729718 AGGTTATGTTGGACAACTAGGGTAT 59.270 40.000 15.37 3.36 41.67 2.73
275 276 6.904654 AGGTTATGTTGGACAACTAGGGTATA 59.095 38.462 15.37 2.51 41.67 1.47
276 277 7.403813 AGGTTATGTTGGACAACTAGGGTATAA 59.596 37.037 15.37 7.69 41.67 0.98
277 278 8.048514 GGTTATGTTGGACAACTAGGGTATAAA 58.951 37.037 15.37 0.00 41.67 1.40
278 279 9.452287 GTTATGTTGGACAACTAGGGTATAAAA 57.548 33.333 15.37 0.00 41.67 1.52
281 282 8.343168 TGTTGGACAACTAGGGTATAAAAATG 57.657 34.615 15.37 0.00 41.67 2.32
282 283 7.394923 TGTTGGACAACTAGGGTATAAAAATGG 59.605 37.037 15.37 0.00 41.67 3.16
283 284 6.428295 TGGACAACTAGGGTATAAAAATGGG 58.572 40.000 0.00 0.00 0.00 4.00
284 285 5.831525 GGACAACTAGGGTATAAAAATGGGG 59.168 44.000 0.00 0.00 0.00 4.96
285 286 6.354126 GGACAACTAGGGTATAAAAATGGGGA 60.354 42.308 0.00 0.00 0.00 4.81
286 287 6.669631 ACAACTAGGGTATAAAAATGGGGAG 58.330 40.000 0.00 0.00 0.00 4.30
287 288 6.218938 ACAACTAGGGTATAAAAATGGGGAGT 59.781 38.462 0.00 0.00 0.00 3.85
288 289 7.406739 ACAACTAGGGTATAAAAATGGGGAGTA 59.593 37.037 0.00 0.00 0.00 2.59
289 290 7.628501 ACTAGGGTATAAAAATGGGGAGTAG 57.371 40.000 0.00 0.00 0.00 2.57
290 291 7.144430 ACTAGGGTATAAAAATGGGGAGTAGT 58.856 38.462 0.00 0.00 0.00 2.73
291 292 8.299128 ACTAGGGTATAAAAATGGGGAGTAGTA 58.701 37.037 0.00 0.00 0.00 1.82
292 293 9.335211 CTAGGGTATAAAAATGGGGAGTAGTAT 57.665 37.037 0.00 0.00 0.00 2.12
294 295 9.869574 AGGGTATAAAAATGGGGAGTAGTATAT 57.130 33.333 0.00 0.00 0.00 0.86
295 296 9.901172 GGGTATAAAAATGGGGAGTAGTATATG 57.099 37.037 0.00 0.00 0.00 1.78
305 306 9.965902 ATGGGGAGTAGTATATGAATTCAAATC 57.034 33.333 13.09 3.40 0.00 2.17
306 307 9.170890 TGGGGAGTAGTATATGAATTCAAATCT 57.829 33.333 13.09 10.80 0.00 2.40
307 308 9.660180 GGGGAGTAGTATATGAATTCAAATCTC 57.340 37.037 13.09 12.21 0.00 2.75
337 338 3.413846 AAAAAGTACTCCTTCCGTCCC 57.586 47.619 0.00 0.00 31.27 4.46
338 339 2.019807 AAAGTACTCCTTCCGTCCCA 57.980 50.000 0.00 0.00 31.27 4.37
339 340 1.264295 AAGTACTCCTTCCGTCCCAC 58.736 55.000 0.00 0.00 0.00 4.61
340 341 0.113776 AGTACTCCTTCCGTCCCACA 59.886 55.000 0.00 0.00 0.00 4.17
341 342 0.971386 GTACTCCTTCCGTCCCACAA 59.029 55.000 0.00 0.00 0.00 3.33
342 343 1.553704 GTACTCCTTCCGTCCCACAAT 59.446 52.381 0.00 0.00 0.00 2.71
343 344 0.324943 ACTCCTTCCGTCCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
344 345 0.324943 CTCCTTCCGTCCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
345 346 0.036164 TCCTTCCGTCCCACAATGTG 59.964 55.000 6.37 6.37 0.00 3.21
346 347 0.036164 CCTTCCGTCCCACAATGTGA 59.964 55.000 15.91 0.00 35.23 3.58
347 348 1.544537 CCTTCCGTCCCACAATGTGAA 60.545 52.381 15.91 0.00 35.23 3.18
348 349 2.436417 CTTCCGTCCCACAATGTGAAT 58.564 47.619 15.91 0.00 35.23 2.57
349 350 3.605634 CTTCCGTCCCACAATGTGAATA 58.394 45.455 15.91 0.00 35.23 1.75
350 351 3.260475 TCCGTCCCACAATGTGAATAG 57.740 47.619 15.91 3.64 35.23 1.73
351 352 2.569853 TCCGTCCCACAATGTGAATAGT 59.430 45.455 15.91 0.00 35.23 2.12
352 353 2.677836 CCGTCCCACAATGTGAATAGTG 59.322 50.000 15.91 0.00 35.23 2.74
353 354 3.334691 CGTCCCACAATGTGAATAGTGT 58.665 45.455 15.91 0.00 35.23 3.55
354 355 3.370978 CGTCCCACAATGTGAATAGTGTC 59.629 47.826 15.91 0.00 35.23 3.67
355 356 4.323417 GTCCCACAATGTGAATAGTGTCA 58.677 43.478 15.91 0.00 35.23 3.58
356 357 4.759693 GTCCCACAATGTGAATAGTGTCAA 59.240 41.667 15.91 0.00 35.23 3.18
357 358 5.240623 GTCCCACAATGTGAATAGTGTCAAA 59.759 40.000 15.91 0.00 35.23 2.69
358 359 5.830457 TCCCACAATGTGAATAGTGTCAAAA 59.170 36.000 15.91 0.00 35.23 2.44
359 360 6.322456 TCCCACAATGTGAATAGTGTCAAAAA 59.678 34.615 15.91 0.00 35.23 1.94
380 381 7.617533 AAAAACGTGTATAAGACATTGTTGC 57.382 32.000 0.00 0.00 41.14 4.17
381 382 4.577687 ACGTGTATAAGACATTGTTGCG 57.422 40.909 0.00 0.00 41.14 4.85
382 383 3.369756 ACGTGTATAAGACATTGTTGCGG 59.630 43.478 0.00 0.00 41.14 5.69
383 384 3.242284 CGTGTATAAGACATTGTTGCGGG 60.242 47.826 0.00 0.00 41.14 6.13
384 385 3.687698 GTGTATAAGACATTGTTGCGGGT 59.312 43.478 0.00 0.00 41.14 5.28
385 386 4.155280 GTGTATAAGACATTGTTGCGGGTT 59.845 41.667 0.00 0.00 41.14 4.11
386 387 4.393680 TGTATAAGACATTGTTGCGGGTTC 59.606 41.667 0.00 0.00 31.20 3.62
387 388 1.686355 AAGACATTGTTGCGGGTTCA 58.314 45.000 0.00 0.00 0.00 3.18
388 389 1.686355 AGACATTGTTGCGGGTTCAA 58.314 45.000 0.00 0.00 0.00 2.69
389 390 2.238521 AGACATTGTTGCGGGTTCAAT 58.761 42.857 0.00 0.00 32.93 2.57
390 391 2.627699 AGACATTGTTGCGGGTTCAATT 59.372 40.909 0.00 0.00 30.74 2.32
391 392 3.069443 AGACATTGTTGCGGGTTCAATTT 59.931 39.130 0.00 0.00 30.74 1.82
392 393 3.129871 ACATTGTTGCGGGTTCAATTTG 58.870 40.909 0.00 0.00 30.74 2.32
393 394 2.231215 TTGTTGCGGGTTCAATTTGG 57.769 45.000 0.00 0.00 0.00 3.28
394 395 1.403814 TGTTGCGGGTTCAATTTGGA 58.596 45.000 0.00 0.00 0.00 3.53
395 396 1.067821 TGTTGCGGGTTCAATTTGGAC 59.932 47.619 0.00 0.00 0.00 4.02
396 397 1.067821 GTTGCGGGTTCAATTTGGACA 59.932 47.619 9.98 0.00 0.00 4.02
397 398 0.958091 TGCGGGTTCAATTTGGACAG 59.042 50.000 9.98 4.49 0.00 3.51
398 399 1.243902 GCGGGTTCAATTTGGACAGA 58.756 50.000 9.98 0.00 0.00 3.41
399 400 1.200020 GCGGGTTCAATTTGGACAGAG 59.800 52.381 9.98 1.88 0.00 3.35
400 401 2.504367 CGGGTTCAATTTGGACAGAGT 58.496 47.619 9.98 0.00 0.00 3.24
401 402 2.884639 CGGGTTCAATTTGGACAGAGTT 59.115 45.455 9.98 0.00 0.00 3.01
402 403 4.069304 CGGGTTCAATTTGGACAGAGTTA 58.931 43.478 9.98 0.00 0.00 2.24
403 404 4.700213 CGGGTTCAATTTGGACAGAGTTAT 59.300 41.667 9.98 0.00 0.00 1.89
404 405 5.183140 CGGGTTCAATTTGGACAGAGTTATT 59.817 40.000 9.98 0.00 0.00 1.40
405 406 6.373216 CGGGTTCAATTTGGACAGAGTTATTA 59.627 38.462 9.98 0.00 0.00 0.98
406 407 7.067008 CGGGTTCAATTTGGACAGAGTTATTAT 59.933 37.037 9.98 0.00 0.00 1.28
407 408 9.403583 GGGTTCAATTTGGACAGAGTTATTATA 57.596 33.333 9.98 0.00 0.00 0.98
415 416 9.542462 TTTGGACAGAGTTATTATAATCGAAGG 57.458 33.333 0.00 0.00 0.00 3.46
416 417 8.473358 TGGACAGAGTTATTATAATCGAAGGA 57.527 34.615 0.00 0.00 0.00 3.36
417 418 8.577296 TGGACAGAGTTATTATAATCGAAGGAG 58.423 37.037 0.00 0.00 0.00 3.69
418 419 8.794553 GGACAGAGTTATTATAATCGAAGGAGA 58.205 37.037 0.00 0.00 0.00 3.71
432 433 7.887996 ATCGAAGGAGATTAGTACTAGTACG 57.112 40.000 23.87 10.29 40.80 3.67
433 434 6.810911 TCGAAGGAGATTAGTACTAGTACGT 58.189 40.000 23.87 15.54 40.80 3.57
434 435 7.268586 TCGAAGGAGATTAGTACTAGTACGTT 58.731 38.462 23.87 14.33 40.80 3.99
435 436 7.436673 TCGAAGGAGATTAGTACTAGTACGTTC 59.563 40.741 23.87 20.42 40.80 3.95
436 437 7.475771 AAGGAGATTAGTACTAGTACGTTCG 57.524 40.000 23.87 0.00 40.80 3.95
437 438 6.810911 AGGAGATTAGTACTAGTACGTTCGA 58.189 40.000 23.87 11.78 40.80 3.71
438 439 7.441017 AGGAGATTAGTACTAGTACGTTCGAT 58.559 38.462 23.87 15.20 40.80 3.59
439 440 7.930865 AGGAGATTAGTACTAGTACGTTCGATT 59.069 37.037 23.87 10.00 40.80 3.34
452 453 2.495939 GTTCGATTGCACGTCATGAAC 58.504 47.619 0.00 0.00 34.70 3.18
567 578 1.105457 ACAAAAGCAGCAGAGCACAA 58.895 45.000 0.00 0.00 36.85 3.33
591 602 0.780637 TCACCTCACCTCACTCCTCT 59.219 55.000 0.00 0.00 0.00 3.69
593 604 1.080638 ACCTCACCTCACTCCTCTCT 58.919 55.000 0.00 0.00 0.00 3.10
594 605 1.431243 ACCTCACCTCACTCCTCTCTT 59.569 52.381 0.00 0.00 0.00 2.85
596 607 2.099405 CTCACCTCACTCCTCTCTTCC 58.901 57.143 0.00 0.00 0.00 3.46
632 643 2.108250 CCTCTTCTCCCTCCAAAAACCA 59.892 50.000 0.00 0.00 0.00 3.67
655 908 1.302511 CTCCACCCTCCAAACACCG 60.303 63.158 0.00 0.00 0.00 4.94
666 919 0.039256 CAAACACCGCCACCATCAAG 60.039 55.000 0.00 0.00 0.00 3.02
667 920 0.179004 AAACACCGCCACCATCAAGA 60.179 50.000 0.00 0.00 0.00 3.02
706 965 2.174592 CGCGAGATCCGATCCGAG 59.825 66.667 18.00 13.04 41.76 4.63
758 1020 2.355193 GGAGCTCGCCTCTGTCCTT 61.355 63.158 7.83 0.00 40.57 3.36
844 1125 4.320456 CTCGATCCATGCCCGGGG 62.320 72.222 25.28 9.31 0.00 5.73
1224 1530 3.839432 CCCTCCTCCTTCGGCGTC 61.839 72.222 6.85 0.00 0.00 5.19
1506 1815 4.629523 GACGACCCGGCCAACCAA 62.630 66.667 2.24 0.00 34.57 3.67
1744 2062 2.570284 TTCTTCGTGCTCGCCAGGA 61.570 57.895 2.69 0.00 36.62 3.86
2247 2577 2.074576 CTGTGCCAAGTCTCATCAGTG 58.925 52.381 0.00 0.00 0.00 3.66
2257 2587 4.973168 AGTCTCATCAGTGTTTTAGGCAA 58.027 39.130 0.00 0.00 0.00 4.52
2397 2733 6.798427 TCCTTATCTTGCAGTTCAGATAGT 57.202 37.500 6.07 0.00 0.00 2.12
2462 2810 5.351740 GGTGTCTTAGTAAAAGGATGCTGAC 59.648 44.000 0.00 0.00 0.00 3.51
2643 2998 2.943653 GCCTTGTTGTTCCGTCGG 59.056 61.111 4.39 4.39 0.00 4.79
2679 3036 2.348888 GGGATGCTGCTGCTTGCTT 61.349 57.895 17.00 11.40 43.37 3.91
2683 3040 1.741706 GATGCTGCTGCTTGCTTAGAA 59.258 47.619 17.00 0.00 43.37 2.10
2801 3164 1.502640 CGAGCGAGAGGAAGTCGTT 59.497 57.895 0.00 0.00 39.69 3.85
2953 3319 4.764823 TGTCAATATCACACACCTTTTCCC 59.235 41.667 0.00 0.00 0.00 3.97
2999 3393 3.084786 GGCACCACTATCTTCTTGCTTT 58.915 45.455 0.00 0.00 0.00 3.51
3000 3394 3.119708 GGCACCACTATCTTCTTGCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
3001 3395 3.753272 GCACCACTATCTTCTTGCTTTGA 59.247 43.478 0.00 0.00 0.00 2.69
3002 3396 4.216257 GCACCACTATCTTCTTGCTTTGAA 59.784 41.667 0.00 0.00 0.00 2.69
3004 3398 4.762251 ACCACTATCTTCTTGCTTTGAACC 59.238 41.667 0.00 0.00 0.00 3.62
3005 3399 4.142816 CCACTATCTTCTTGCTTTGAACCG 60.143 45.833 0.00 0.00 0.00 4.44
3006 3400 4.690748 CACTATCTTCTTGCTTTGAACCGA 59.309 41.667 0.00 0.00 0.00 4.69
3007 3401 5.179368 CACTATCTTCTTGCTTTGAACCGAA 59.821 40.000 0.00 0.00 0.00 4.30
3008 3402 4.756084 ATCTTCTTGCTTTGAACCGAAG 57.244 40.909 0.00 0.00 0.00 3.79
3009 3403 3.541632 TCTTCTTGCTTTGAACCGAAGT 58.458 40.909 0.00 0.00 32.10 3.01
3010 3404 3.945285 TCTTCTTGCTTTGAACCGAAGTT 59.055 39.130 0.00 0.00 39.54 2.66
3011 3405 3.691049 TCTTGCTTTGAACCGAAGTTG 57.309 42.857 0.00 0.00 35.94 3.16
3012 3406 2.119457 CTTGCTTTGAACCGAAGTTGC 58.881 47.619 0.00 0.00 35.94 4.17
3013 3407 1.388547 TGCTTTGAACCGAAGTTGCT 58.611 45.000 0.00 0.00 35.94 3.91
3014 3408 1.748493 TGCTTTGAACCGAAGTTGCTT 59.252 42.857 0.00 0.00 35.94 3.91
3015 3409 2.946329 TGCTTTGAACCGAAGTTGCTTA 59.054 40.909 0.00 0.00 35.94 3.09
3016 3410 3.568007 TGCTTTGAACCGAAGTTGCTTAT 59.432 39.130 0.00 0.00 35.94 1.73
3017 3411 4.757657 TGCTTTGAACCGAAGTTGCTTATA 59.242 37.500 0.00 0.00 35.94 0.98
3018 3412 5.414454 TGCTTTGAACCGAAGTTGCTTATAT 59.586 36.000 0.00 0.00 35.94 0.86
3019 3413 6.072175 TGCTTTGAACCGAAGTTGCTTATATT 60.072 34.615 0.00 0.00 35.94 1.28
3020 3414 6.469275 GCTTTGAACCGAAGTTGCTTATATTC 59.531 38.462 0.00 0.00 35.94 1.75
3021 3415 7.626452 GCTTTGAACCGAAGTTGCTTATATTCT 60.626 37.037 0.00 0.00 35.94 2.40
3022 3416 7.681939 TTGAACCGAAGTTGCTTATATTCTT 57.318 32.000 0.00 0.00 35.94 2.52
3023 3417 7.681939 TGAACCGAAGTTGCTTATATTCTTT 57.318 32.000 0.00 0.00 35.94 2.52
3024 3418 7.748847 TGAACCGAAGTTGCTTATATTCTTTC 58.251 34.615 0.00 0.00 35.94 2.62
3025 3419 7.606456 TGAACCGAAGTTGCTTATATTCTTTCT 59.394 33.333 0.00 0.00 35.94 2.52
3026 3420 7.308782 ACCGAAGTTGCTTATATTCTTTCTG 57.691 36.000 0.00 0.00 0.00 3.02
3027 3421 6.316390 ACCGAAGTTGCTTATATTCTTTCTGG 59.684 38.462 0.00 0.00 0.00 3.86
3028 3422 6.195165 CGAAGTTGCTTATATTCTTTCTGGC 58.805 40.000 0.00 0.00 0.00 4.85
3029 3423 6.037610 CGAAGTTGCTTATATTCTTTCTGGCT 59.962 38.462 0.00 0.00 0.00 4.75
3030 3424 6.934048 AGTTGCTTATATTCTTTCTGGCTC 57.066 37.500 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.536761 TTCGGCGACCCTATTATTGG 57.463 50.000 10.16 0.00 0.00 3.16
3 4 3.135167 TCCTTTTCGGCGACCCTATTATT 59.865 43.478 10.16 0.00 0.00 1.40
4 5 2.701951 TCCTTTTCGGCGACCCTATTAT 59.298 45.455 10.16 0.00 0.00 1.28
6 7 0.906775 TCCTTTTCGGCGACCCTATT 59.093 50.000 10.16 0.00 0.00 1.73
7 8 0.177373 GTCCTTTTCGGCGACCCTAT 59.823 55.000 10.16 0.00 0.00 2.57
8 9 1.186917 TGTCCTTTTCGGCGACCCTA 61.187 55.000 10.16 0.00 0.00 3.53
9 10 2.047213 TTGTCCTTTTCGGCGACCCT 62.047 55.000 10.16 0.00 0.00 4.34
10 11 1.167781 TTTGTCCTTTTCGGCGACCC 61.168 55.000 10.16 0.00 0.00 4.46
11 12 0.040692 GTTTGTCCTTTTCGGCGACC 60.041 55.000 10.16 0.00 0.00 4.79
12 13 0.040692 GGTTTGTCCTTTTCGGCGAC 60.041 55.000 10.16 0.00 0.00 5.19
13 14 0.464013 TGGTTTGTCCTTTTCGGCGA 60.464 50.000 4.99 4.99 37.07 5.54
14 15 0.596082 ATGGTTTGTCCTTTTCGGCG 59.404 50.000 0.00 0.00 37.07 6.46
15 16 3.926821 TTATGGTTTGTCCTTTTCGGC 57.073 42.857 0.00 0.00 37.07 5.54
16 17 8.301002 TCTAAATTTATGGTTTGTCCTTTTCGG 58.699 33.333 0.00 0.00 37.07 4.30
17 18 9.341899 CTCTAAATTTATGGTTTGTCCTTTTCG 57.658 33.333 0.00 0.00 37.07 3.46
18 19 9.639601 CCTCTAAATTTATGGTTTGTCCTTTTC 57.360 33.333 0.00 0.00 37.07 2.29
19 20 9.154632 ACCTCTAAATTTATGGTTTGTCCTTTT 57.845 29.630 13.93 0.00 37.07 2.27
20 21 8.721133 ACCTCTAAATTTATGGTTTGTCCTTT 57.279 30.769 13.93 0.00 37.07 3.11
21 22 7.947890 TGACCTCTAAATTTATGGTTTGTCCTT 59.052 33.333 18.28 0.95 37.07 3.36
22 23 7.466804 TGACCTCTAAATTTATGGTTTGTCCT 58.533 34.615 18.28 1.48 37.07 3.85
23 24 7.696992 TGACCTCTAAATTTATGGTTTGTCC 57.303 36.000 18.28 9.89 0.00 4.02
36 37 8.606830 GGTGATCCCTATATTTGACCTCTAAAT 58.393 37.037 0.00 0.00 0.00 1.40
37 38 7.570982 TGGTGATCCCTATATTTGACCTCTAAA 59.429 37.037 0.00 0.00 0.00 1.85
38 39 7.016268 GTGGTGATCCCTATATTTGACCTCTAA 59.984 40.741 0.00 0.00 0.00 2.10
39 40 6.497259 GTGGTGATCCCTATATTTGACCTCTA 59.503 42.308 0.00 0.00 0.00 2.43
40 41 5.308237 GTGGTGATCCCTATATTTGACCTCT 59.692 44.000 0.00 0.00 0.00 3.69
41 42 5.071788 TGTGGTGATCCCTATATTTGACCTC 59.928 44.000 0.00 0.00 0.00 3.85
42 43 4.975147 TGTGGTGATCCCTATATTTGACCT 59.025 41.667 0.00 0.00 0.00 3.85
43 44 5.304686 TGTGGTGATCCCTATATTTGACC 57.695 43.478 0.00 0.00 0.00 4.02
44 45 7.639113 TTTTGTGGTGATCCCTATATTTGAC 57.361 36.000 0.00 0.00 0.00 3.18
45 46 8.112822 TCTTTTTGTGGTGATCCCTATATTTGA 58.887 33.333 0.00 0.00 0.00 2.69
46 47 8.292444 TCTTTTTGTGGTGATCCCTATATTTG 57.708 34.615 0.00 0.00 0.00 2.32
47 48 8.893563 TTCTTTTTGTGGTGATCCCTATATTT 57.106 30.769 0.00 0.00 0.00 1.40
48 49 8.893563 TTTCTTTTTGTGGTGATCCCTATATT 57.106 30.769 0.00 0.00 0.00 1.28
49 50 7.561356 CCTTTCTTTTTGTGGTGATCCCTATAT 59.439 37.037 0.00 0.00 0.00 0.86
50 51 6.889722 CCTTTCTTTTTGTGGTGATCCCTATA 59.110 38.462 0.00 0.00 0.00 1.31
51 52 5.716703 CCTTTCTTTTTGTGGTGATCCCTAT 59.283 40.000 0.00 0.00 0.00 2.57
52 53 5.076873 CCTTTCTTTTTGTGGTGATCCCTA 58.923 41.667 0.00 0.00 0.00 3.53
53 54 3.897505 CCTTTCTTTTTGTGGTGATCCCT 59.102 43.478 0.00 0.00 0.00 4.20
54 55 3.641436 ACCTTTCTTTTTGTGGTGATCCC 59.359 43.478 0.00 0.00 0.00 3.85
55 56 4.340950 TGACCTTTCTTTTTGTGGTGATCC 59.659 41.667 0.00 0.00 0.00 3.36
56 57 5.514274 TGACCTTTCTTTTTGTGGTGATC 57.486 39.130 0.00 0.00 0.00 2.92
57 58 5.835280 AGATGACCTTTCTTTTTGTGGTGAT 59.165 36.000 0.00 0.00 0.00 3.06
58 59 5.067674 CAGATGACCTTTCTTTTTGTGGTGA 59.932 40.000 0.00 0.00 0.00 4.02
59 60 5.284079 CAGATGACCTTTCTTTTTGTGGTG 58.716 41.667 0.00 0.00 0.00 4.17
60 61 4.342092 CCAGATGACCTTTCTTTTTGTGGT 59.658 41.667 0.00 0.00 0.00 4.16
61 62 4.342092 ACCAGATGACCTTTCTTTTTGTGG 59.658 41.667 0.00 0.00 0.00 4.17
62 63 5.520376 ACCAGATGACCTTTCTTTTTGTG 57.480 39.130 0.00 0.00 0.00 3.33
63 64 6.544928 AAACCAGATGACCTTTCTTTTTGT 57.455 33.333 0.00 0.00 0.00 2.83
64 65 7.940850 TCTAAACCAGATGACCTTTCTTTTTG 58.059 34.615 0.00 0.00 0.00 2.44
65 66 8.533569 TTCTAAACCAGATGACCTTTCTTTTT 57.466 30.769 0.00 0.00 31.77 1.94
66 67 8.414003 GTTTCTAAACCAGATGACCTTTCTTTT 58.586 33.333 0.00 0.00 31.77 2.27
67 68 7.941919 GTTTCTAAACCAGATGACCTTTCTTT 58.058 34.615 0.00 0.00 31.77 2.52
68 69 7.511959 GTTTCTAAACCAGATGACCTTTCTT 57.488 36.000 0.00 0.00 31.77 2.52
83 84 6.423604 CCATGATTTGGTTGTGGTTTCTAAAC 59.576 38.462 0.00 0.00 40.99 2.01
84 85 6.520272 CCATGATTTGGTTGTGGTTTCTAAA 58.480 36.000 0.00 0.00 40.99 1.85
85 86 6.095432 CCATGATTTGGTTGTGGTTTCTAA 57.905 37.500 0.00 0.00 40.99 2.10
86 87 5.720371 CCATGATTTGGTTGTGGTTTCTA 57.280 39.130 0.00 0.00 40.99 2.10
87 88 4.605640 CCATGATTTGGTTGTGGTTTCT 57.394 40.909 0.00 0.00 40.99 2.52
99 100 0.247262 CGCGTCGACACCATGATTTG 60.247 55.000 17.16 0.00 0.00 2.32
100 101 1.358725 CCGCGTCGACACCATGATTT 61.359 55.000 17.16 0.00 0.00 2.17
101 102 1.809619 CCGCGTCGACACCATGATT 60.810 57.895 17.16 0.00 0.00 2.57
102 103 2.202743 CCGCGTCGACACCATGAT 60.203 61.111 17.16 0.00 0.00 2.45
119 120 4.004196 ACCCTTATTGAATAGGCTACGC 57.996 45.455 0.00 0.00 0.00 4.42
120 121 5.238650 CCAAACCCTTATTGAATAGGCTACG 59.761 44.000 0.00 0.00 0.00 3.51
121 122 5.009710 GCCAAACCCTTATTGAATAGGCTAC 59.990 44.000 0.00 0.00 35.63 3.58
122 123 5.137551 GCCAAACCCTTATTGAATAGGCTA 58.862 41.667 0.00 0.00 35.63 3.93
123 124 3.960755 GCCAAACCCTTATTGAATAGGCT 59.039 43.478 0.00 0.00 35.63 4.58
124 125 3.243401 CGCCAAACCCTTATTGAATAGGC 60.243 47.826 0.00 0.00 35.19 3.93
125 126 4.036380 GTCGCCAAACCCTTATTGAATAGG 59.964 45.833 0.00 0.00 0.00 2.57
126 127 4.638421 TGTCGCCAAACCCTTATTGAATAG 59.362 41.667 0.00 0.00 0.00 1.73
127 128 4.590918 TGTCGCCAAACCCTTATTGAATA 58.409 39.130 0.00 0.00 0.00 1.75
128 129 3.426615 TGTCGCCAAACCCTTATTGAAT 58.573 40.909 0.00 0.00 0.00 2.57
129 130 2.865079 TGTCGCCAAACCCTTATTGAA 58.135 42.857 0.00 0.00 0.00 2.69
130 131 2.570415 TGTCGCCAAACCCTTATTGA 57.430 45.000 0.00 0.00 0.00 2.57
131 132 3.242608 CGTATGTCGCCAAACCCTTATTG 60.243 47.826 0.00 0.00 0.00 1.90
132 133 2.940410 CGTATGTCGCCAAACCCTTATT 59.060 45.455 0.00 0.00 0.00 1.40
133 134 2.093341 ACGTATGTCGCCAAACCCTTAT 60.093 45.455 0.00 0.00 44.19 1.73
134 135 1.275856 ACGTATGTCGCCAAACCCTTA 59.724 47.619 0.00 0.00 44.19 2.69
135 136 0.035739 ACGTATGTCGCCAAACCCTT 59.964 50.000 0.00 0.00 44.19 3.95
136 137 0.035739 AACGTATGTCGCCAAACCCT 59.964 50.000 0.00 0.00 44.19 4.34
137 138 1.724429 TAACGTATGTCGCCAAACCC 58.276 50.000 0.00 0.00 44.19 4.11
138 139 4.345271 AATTAACGTATGTCGCCAAACC 57.655 40.909 0.00 0.00 44.19 3.27
139 140 6.630045 GGATAAATTAACGTATGTCGCCAAAC 59.370 38.462 0.00 0.00 44.19 2.93
140 141 6.315642 TGGATAAATTAACGTATGTCGCCAAA 59.684 34.615 0.00 0.00 44.19 3.28
141 142 5.816258 TGGATAAATTAACGTATGTCGCCAA 59.184 36.000 0.00 0.00 44.19 4.52
142 143 5.358090 TGGATAAATTAACGTATGTCGCCA 58.642 37.500 0.00 0.00 44.19 5.69
143 144 5.910637 TGGATAAATTAACGTATGTCGCC 57.089 39.130 0.00 0.00 44.19 5.54
144 145 6.146510 TGGATGGATAAATTAACGTATGTCGC 59.853 38.462 0.00 0.00 44.19 5.19
145 146 7.646446 TGGATGGATAAATTAACGTATGTCG 57.354 36.000 0.00 0.00 46.00 4.35
146 147 8.380644 CGATGGATGGATAAATTAACGTATGTC 58.619 37.037 0.00 0.00 0.00 3.06
147 148 8.092068 TCGATGGATGGATAAATTAACGTATGT 58.908 33.333 0.00 0.00 0.00 2.29
148 149 8.474006 TCGATGGATGGATAAATTAACGTATG 57.526 34.615 0.00 0.00 0.00 2.39
149 150 9.667107 AATCGATGGATGGATAAATTAACGTAT 57.333 29.630 0.00 0.00 31.83 3.06
150 151 8.931775 CAATCGATGGATGGATAAATTAACGTA 58.068 33.333 0.00 0.00 31.83 3.57
151 152 7.806690 CAATCGATGGATGGATAAATTAACGT 58.193 34.615 0.00 0.00 31.83 3.99
168 169 1.660167 TGCAGCTCTTCCAATCGATG 58.340 50.000 0.00 0.00 0.00 3.84
169 170 2.408271 TTGCAGCTCTTCCAATCGAT 57.592 45.000 0.00 0.00 0.00 3.59
170 171 2.183478 TTTGCAGCTCTTCCAATCGA 57.817 45.000 0.00 0.00 0.00 3.59
171 172 2.995466 TTTTGCAGCTCTTCCAATCG 57.005 45.000 0.00 0.00 0.00 3.34
188 189 8.998377 GGTGCCAAAATGTAATTCATACTTTTT 58.002 29.630 6.46 6.46 45.44 1.94
189 190 7.606073 GGGTGCCAAAATGTAATTCATACTTTT 59.394 33.333 0.00 0.00 41.22 2.27
190 191 7.102993 GGGTGCCAAAATGTAATTCATACTTT 58.897 34.615 0.00 0.00 33.67 2.66
191 192 6.627065 CGGGTGCCAAAATGTAATTCATACTT 60.627 38.462 0.00 0.00 33.67 2.24
192 193 5.163561 CGGGTGCCAAAATGTAATTCATACT 60.164 40.000 0.00 0.00 33.67 2.12
193 194 5.040635 CGGGTGCCAAAATGTAATTCATAC 58.959 41.667 0.00 0.00 33.67 2.39
194 195 4.440802 GCGGGTGCCAAAATGTAATTCATA 60.441 41.667 0.00 0.00 31.64 2.15
195 196 3.678529 GCGGGTGCCAAAATGTAATTCAT 60.679 43.478 0.00 0.00 31.64 2.57
196 197 2.353208 GCGGGTGCCAAAATGTAATTCA 60.353 45.455 0.00 0.00 31.64 2.57
197 198 2.094234 AGCGGGTGCCAAAATGTAATTC 60.094 45.455 0.00 0.00 44.31 2.17
198 199 1.899142 AGCGGGTGCCAAAATGTAATT 59.101 42.857 0.00 0.00 44.31 1.40
199 200 1.476488 GAGCGGGTGCCAAAATGTAAT 59.524 47.619 0.00 0.00 44.31 1.89
200 201 0.885196 GAGCGGGTGCCAAAATGTAA 59.115 50.000 0.00 0.00 44.31 2.41
201 202 0.963355 GGAGCGGGTGCCAAAATGTA 60.963 55.000 0.00 0.00 44.31 2.29
202 203 2.275380 GGAGCGGGTGCCAAAATGT 61.275 57.895 0.00 0.00 44.31 2.71
203 204 1.535204 AAGGAGCGGGTGCCAAAATG 61.535 55.000 0.00 0.00 44.31 2.32
204 205 1.228862 AAGGAGCGGGTGCCAAAAT 60.229 52.632 0.00 0.00 44.31 1.82
205 206 2.197324 AAGGAGCGGGTGCCAAAA 59.803 55.556 0.00 0.00 44.31 2.44
206 207 2.597217 CAAGGAGCGGGTGCCAAA 60.597 61.111 0.00 0.00 44.31 3.28
222 223 5.743398 GCGATTTATTACTTGCTGAATTGCA 59.257 36.000 0.00 0.00 41.65 4.08
223 224 5.173854 GGCGATTTATTACTTGCTGAATTGC 59.826 40.000 0.00 0.00 34.63 3.56
224 225 6.197096 GTGGCGATTTATTACTTGCTGAATTG 59.803 38.462 0.00 0.00 0.00 2.32
225 226 6.127758 TGTGGCGATTTATTACTTGCTGAATT 60.128 34.615 0.00 0.00 0.00 2.17
226 227 5.356751 TGTGGCGATTTATTACTTGCTGAAT 59.643 36.000 0.00 0.00 0.00 2.57
227 228 4.697828 TGTGGCGATTTATTACTTGCTGAA 59.302 37.500 0.00 0.00 0.00 3.02
228 229 4.257731 TGTGGCGATTTATTACTTGCTGA 58.742 39.130 0.00 0.00 0.00 4.26
229 230 4.496341 CCTGTGGCGATTTATTACTTGCTG 60.496 45.833 0.00 0.00 0.00 4.41
230 231 3.627577 CCTGTGGCGATTTATTACTTGCT 59.372 43.478 0.00 0.00 0.00 3.91
231 232 3.377172 ACCTGTGGCGATTTATTACTTGC 59.623 43.478 0.00 0.00 0.00 4.01
232 233 5.560966 AACCTGTGGCGATTTATTACTTG 57.439 39.130 0.00 0.00 0.00 3.16
233 234 6.826741 ACATAACCTGTGGCGATTTATTACTT 59.173 34.615 0.00 0.00 36.48 2.24
234 235 6.354130 ACATAACCTGTGGCGATTTATTACT 58.646 36.000 0.00 0.00 36.48 2.24
235 236 6.613755 ACATAACCTGTGGCGATTTATTAC 57.386 37.500 0.00 0.00 36.48 1.89
236 237 6.038825 CCAACATAACCTGTGGCGATTTATTA 59.961 38.462 0.00 0.00 38.39 0.98
237 238 5.163561 CCAACATAACCTGTGGCGATTTATT 60.164 40.000 0.00 0.00 38.39 1.40
238 239 4.338118 CCAACATAACCTGTGGCGATTTAT 59.662 41.667 0.00 0.00 38.39 1.40
239 240 3.692101 CCAACATAACCTGTGGCGATTTA 59.308 43.478 0.00 0.00 38.39 1.40
240 241 2.491693 CCAACATAACCTGTGGCGATTT 59.508 45.455 0.00 0.00 38.39 2.17
241 242 2.091541 CCAACATAACCTGTGGCGATT 58.908 47.619 0.00 0.00 38.39 3.34
242 243 1.280710 TCCAACATAACCTGTGGCGAT 59.719 47.619 0.00 0.00 38.39 4.58
243 244 0.687920 TCCAACATAACCTGTGGCGA 59.312 50.000 0.00 0.00 38.39 5.54
244 245 0.802494 GTCCAACATAACCTGTGGCG 59.198 55.000 0.00 0.00 38.39 5.69
245 246 1.904287 TGTCCAACATAACCTGTGGC 58.096 50.000 0.00 0.00 38.39 5.01
246 247 3.486383 AGTTGTCCAACATAACCTGTGG 58.514 45.455 12.32 0.00 43.47 4.17
247 248 4.695455 CCTAGTTGTCCAACATAACCTGTG 59.305 45.833 12.32 0.00 43.47 3.66
248 249 4.263331 CCCTAGTTGTCCAACATAACCTGT 60.263 45.833 12.32 0.00 43.47 4.00
249 250 4.261801 CCCTAGTTGTCCAACATAACCTG 58.738 47.826 12.32 0.00 43.47 4.00
250 251 3.914435 ACCCTAGTTGTCCAACATAACCT 59.086 43.478 12.32 0.00 43.47 3.50
251 252 4.296621 ACCCTAGTTGTCCAACATAACC 57.703 45.455 12.32 0.00 43.47 2.85
252 253 9.452287 TTTTATACCCTAGTTGTCCAACATAAC 57.548 33.333 12.32 0.00 43.47 1.89
255 256 8.966868 CATTTTTATACCCTAGTTGTCCAACAT 58.033 33.333 12.32 0.00 43.47 2.71
256 257 7.394923 CCATTTTTATACCCTAGTTGTCCAACA 59.605 37.037 12.32 0.00 43.47 3.33
257 258 7.147966 CCCATTTTTATACCCTAGTTGTCCAAC 60.148 40.741 1.90 1.90 41.45 3.77
258 259 6.893005 CCCATTTTTATACCCTAGTTGTCCAA 59.107 38.462 0.00 0.00 0.00 3.53
259 260 6.428295 CCCATTTTTATACCCTAGTTGTCCA 58.572 40.000 0.00 0.00 0.00 4.02
260 261 5.831525 CCCCATTTTTATACCCTAGTTGTCC 59.168 44.000 0.00 0.00 0.00 4.02
261 262 6.665695 TCCCCATTTTTATACCCTAGTTGTC 58.334 40.000 0.00 0.00 0.00 3.18
262 263 6.218938 ACTCCCCATTTTTATACCCTAGTTGT 59.781 38.462 0.00 0.00 0.00 3.32
263 264 6.669631 ACTCCCCATTTTTATACCCTAGTTG 58.330 40.000 0.00 0.00 0.00 3.16
264 265 6.920695 ACTCCCCATTTTTATACCCTAGTT 57.079 37.500 0.00 0.00 0.00 2.24
265 266 7.144430 ACTACTCCCCATTTTTATACCCTAGT 58.856 38.462 0.00 0.00 0.00 2.57
266 267 7.628501 ACTACTCCCCATTTTTATACCCTAG 57.371 40.000 0.00 0.00 0.00 3.02
268 269 9.869574 ATATACTACTCCCCATTTTTATACCCT 57.130 33.333 0.00 0.00 0.00 4.34
269 270 9.901172 CATATACTACTCCCCATTTTTATACCC 57.099 37.037 0.00 0.00 0.00 3.69
279 280 9.965902 GATTTGAATTCATATACTACTCCCCAT 57.034 33.333 9.40 0.00 0.00 4.00
280 281 9.170890 AGATTTGAATTCATATACTACTCCCCA 57.829 33.333 9.40 0.00 0.00 4.96
281 282 9.660180 GAGATTTGAATTCATATACTACTCCCC 57.340 37.037 9.40 0.00 0.00 4.81
317 318 2.707257 TGGGACGGAAGGAGTACTTTTT 59.293 45.455 0.00 0.00 40.21 1.94
318 319 2.038164 GTGGGACGGAAGGAGTACTTTT 59.962 50.000 0.00 0.00 40.21 2.27
319 320 1.622312 GTGGGACGGAAGGAGTACTTT 59.378 52.381 0.00 0.00 40.21 2.66
320 321 1.264295 GTGGGACGGAAGGAGTACTT 58.736 55.000 0.00 0.00 43.65 2.24
321 322 0.113776 TGTGGGACGGAAGGAGTACT 59.886 55.000 0.00 0.00 0.00 2.73
322 323 0.971386 TTGTGGGACGGAAGGAGTAC 59.029 55.000 0.00 0.00 0.00 2.73
323 324 1.553248 CATTGTGGGACGGAAGGAGTA 59.447 52.381 0.00 0.00 0.00 2.59
324 325 0.324943 CATTGTGGGACGGAAGGAGT 59.675 55.000 0.00 0.00 0.00 3.85
325 326 0.324943 ACATTGTGGGACGGAAGGAG 59.675 55.000 0.00 0.00 0.00 3.69
326 327 0.036164 CACATTGTGGGACGGAAGGA 59.964 55.000 9.00 0.00 0.00 3.36
327 328 0.036164 TCACATTGTGGGACGGAAGG 59.964 55.000 16.46 0.00 33.87 3.46
328 329 1.890876 TTCACATTGTGGGACGGAAG 58.109 50.000 16.46 0.00 33.87 3.46
329 330 2.577606 ATTCACATTGTGGGACGGAA 57.422 45.000 16.46 3.15 33.87 4.30
330 331 2.569853 ACTATTCACATTGTGGGACGGA 59.430 45.455 16.46 0.00 33.87 4.69
331 332 2.677836 CACTATTCACATTGTGGGACGG 59.322 50.000 16.46 6.56 33.79 4.79
332 333 3.334691 ACACTATTCACATTGTGGGACG 58.665 45.455 16.46 6.30 39.63 4.79
333 334 4.323417 TGACACTATTCACATTGTGGGAC 58.677 43.478 16.46 0.00 39.63 4.46
334 335 4.632327 TGACACTATTCACATTGTGGGA 57.368 40.909 16.46 6.60 39.63 4.37
335 336 5.703978 TTTGACACTATTCACATTGTGGG 57.296 39.130 16.46 7.48 39.63 4.61
356 357 6.358558 CGCAACAATGTCTTATACACGTTTTT 59.641 34.615 0.00 0.00 42.09 1.94
357 358 5.849081 CGCAACAATGTCTTATACACGTTTT 59.151 36.000 0.00 0.00 42.09 2.43
358 359 5.379003 CGCAACAATGTCTTATACACGTTT 58.621 37.500 0.00 0.00 42.09 3.60
359 360 4.142988 CCGCAACAATGTCTTATACACGTT 60.143 41.667 0.00 0.00 42.09 3.99
360 361 3.369756 CCGCAACAATGTCTTATACACGT 59.630 43.478 0.00 0.00 42.09 4.49
361 362 3.242284 CCCGCAACAATGTCTTATACACG 60.242 47.826 0.00 0.00 42.09 4.49
362 363 3.687698 ACCCGCAACAATGTCTTATACAC 59.312 43.478 0.00 0.00 42.09 2.90
363 364 3.945346 ACCCGCAACAATGTCTTATACA 58.055 40.909 0.00 0.00 43.86 2.29
364 365 4.393680 TGAACCCGCAACAATGTCTTATAC 59.606 41.667 0.00 0.00 0.00 1.47
365 366 4.580868 TGAACCCGCAACAATGTCTTATA 58.419 39.130 0.00 0.00 0.00 0.98
366 367 3.417101 TGAACCCGCAACAATGTCTTAT 58.583 40.909 0.00 0.00 0.00 1.73
367 368 2.852449 TGAACCCGCAACAATGTCTTA 58.148 42.857 0.00 0.00 0.00 2.10
368 369 1.686355 TGAACCCGCAACAATGTCTT 58.314 45.000 0.00 0.00 0.00 3.01
369 370 1.686355 TTGAACCCGCAACAATGTCT 58.314 45.000 0.00 0.00 0.00 3.41
370 371 2.723124 ATTGAACCCGCAACAATGTC 57.277 45.000 0.00 0.00 33.79 3.06
371 372 3.129871 CAAATTGAACCCGCAACAATGT 58.870 40.909 0.00 0.00 35.00 2.71
372 373 2.479656 CCAAATTGAACCCGCAACAATG 59.520 45.455 0.00 0.00 35.00 2.82
373 374 2.366916 TCCAAATTGAACCCGCAACAAT 59.633 40.909 0.00 0.00 36.07 2.71
374 375 1.757118 TCCAAATTGAACCCGCAACAA 59.243 42.857 0.00 0.00 0.00 2.83
375 376 1.067821 GTCCAAATTGAACCCGCAACA 59.932 47.619 0.00 0.00 0.00 3.33
376 377 1.067821 TGTCCAAATTGAACCCGCAAC 59.932 47.619 0.00 0.00 0.00 4.17
377 378 1.339610 CTGTCCAAATTGAACCCGCAA 59.660 47.619 0.00 0.00 0.00 4.85
378 379 0.958091 CTGTCCAAATTGAACCCGCA 59.042 50.000 0.00 0.00 0.00 5.69
379 380 1.200020 CTCTGTCCAAATTGAACCCGC 59.800 52.381 0.00 0.00 0.00 6.13
380 381 2.504367 ACTCTGTCCAAATTGAACCCG 58.496 47.619 0.00 0.00 0.00 5.28
381 382 6.590234 AATAACTCTGTCCAAATTGAACCC 57.410 37.500 0.00 0.00 0.00 4.11
389 390 9.542462 CCTTCGATTATAATAACTCTGTCCAAA 57.458 33.333 0.00 0.00 0.00 3.28
390 391 8.920174 TCCTTCGATTATAATAACTCTGTCCAA 58.080 33.333 0.00 0.00 0.00 3.53
391 392 8.473358 TCCTTCGATTATAATAACTCTGTCCA 57.527 34.615 0.00 0.00 0.00 4.02
392 393 8.794553 TCTCCTTCGATTATAATAACTCTGTCC 58.205 37.037 0.00 0.00 0.00 4.02
406 407 9.416794 CGTACTAGTACTAATCTCCTTCGATTA 57.583 37.037 26.36 0.00 35.40 1.75
407 408 7.930865 ACGTACTAGTACTAATCTCCTTCGATT 59.069 37.037 26.36 0.00 37.40 3.34
408 409 7.441017 ACGTACTAGTACTAATCTCCTTCGAT 58.559 38.462 26.36 2.32 34.04 3.59
409 410 6.810911 ACGTACTAGTACTAATCTCCTTCGA 58.189 40.000 26.36 0.00 34.04 3.71
410 411 7.475771 AACGTACTAGTACTAATCTCCTTCG 57.524 40.000 26.36 13.62 34.04 3.79
411 412 7.436673 TCGAACGTACTAGTACTAATCTCCTTC 59.563 40.741 26.36 13.70 34.04 3.46
412 413 7.268586 TCGAACGTACTAGTACTAATCTCCTT 58.731 38.462 26.36 8.09 34.04 3.36
413 414 6.810911 TCGAACGTACTAGTACTAATCTCCT 58.189 40.000 26.36 5.83 34.04 3.69
414 415 7.650834 ATCGAACGTACTAGTACTAATCTCC 57.349 40.000 26.36 10.44 34.04 3.71
415 416 7.530190 GCAATCGAACGTACTAGTACTAATCTC 59.470 40.741 26.36 15.30 34.04 2.75
416 417 7.011763 TGCAATCGAACGTACTAGTACTAATCT 59.988 37.037 26.36 9.45 34.04 2.40
417 418 7.111317 GTGCAATCGAACGTACTAGTACTAATC 59.889 40.741 26.36 19.80 34.04 1.75
418 419 6.909357 GTGCAATCGAACGTACTAGTACTAAT 59.091 38.462 26.36 14.55 34.04 1.73
419 420 6.250819 GTGCAATCGAACGTACTAGTACTAA 58.749 40.000 26.36 10.61 34.04 2.24
420 421 5.500771 CGTGCAATCGAACGTACTAGTACTA 60.501 44.000 26.36 1.89 35.13 1.82
421 422 4.656041 GTGCAATCGAACGTACTAGTACT 58.344 43.478 26.36 12.22 34.04 2.73
422 423 3.476379 CGTGCAATCGAACGTACTAGTAC 59.524 47.826 21.06 21.06 35.13 2.73
423 424 3.673366 CGTGCAATCGAACGTACTAGTA 58.327 45.455 0.00 0.00 35.13 1.82
424 425 2.512885 CGTGCAATCGAACGTACTAGT 58.487 47.619 0.00 0.00 35.13 2.57
431 432 0.713329 TCATGACGTGCAATCGAACG 59.287 50.000 5.86 5.86 45.15 3.95
432 433 2.495939 GTTCATGACGTGCAATCGAAC 58.504 47.619 3.48 4.45 31.52 3.95
433 434 1.125930 CGTTCATGACGTGCAATCGAA 59.874 47.619 3.48 0.00 46.49 3.71
434 435 0.713329 CGTTCATGACGTGCAATCGA 59.287 50.000 3.48 0.00 46.49 3.59
435 436 3.188026 CGTTCATGACGTGCAATCG 57.812 52.632 0.00 0.00 46.49 3.34
487 488 3.130450 TGTCCTAATCCCACCATCCATT 58.870 45.455 0.00 0.00 0.00 3.16
490 491 1.421646 CCTGTCCTAATCCCACCATCC 59.578 57.143 0.00 0.00 0.00 3.51
567 578 0.105453 AGTGAGGTGAGGTGAGGTGT 60.105 55.000 0.00 0.00 0.00 4.16
611 622 2.108250 TGGTTTTTGGAGGGAGAAGAGG 59.892 50.000 0.00 0.00 0.00 3.69
612 623 3.508845 TGGTTTTTGGAGGGAGAAGAG 57.491 47.619 0.00 0.00 0.00 2.85
632 643 1.780309 TGTTTGGAGGGTGGAGATGTT 59.220 47.619 0.00 0.00 0.00 2.71
655 908 2.413142 GGCTGCTCTTGATGGTGGC 61.413 63.158 0.00 0.00 0.00 5.01
706 965 1.530013 AAATCTGCTGCTGGTGGTGC 61.530 55.000 6.69 0.00 0.00 5.01
803 1084 2.095461 GGAGGAAAGATTTCACCAGCC 58.905 52.381 7.56 0.00 38.92 4.85
805 1086 3.350833 CAGGGAGGAAAGATTTCACCAG 58.649 50.000 16.67 6.88 38.92 4.00
807 1088 2.095461 GCAGGGAGGAAAGATTTCACC 58.905 52.381 7.56 9.17 38.92 4.02
884 1165 1.002662 AGGGAGATCCTGCTGCTCA 59.997 57.895 0.00 0.00 46.07 4.26
900 1181 0.460987 GCCAAGACGAGGATCACAGG 60.461 60.000 0.00 0.00 33.17 4.00
1026 1332 2.358003 AGCAGCAGCAGGAACGAC 60.358 61.111 3.17 0.00 45.49 4.34
1084 1390 4.473520 CGGGAGCGTCTTGGGCAT 62.474 66.667 0.00 0.00 0.00 4.40
1335 1644 0.170561 CGTGGACGTAGAGGTTGAGG 59.829 60.000 0.00 0.00 34.11 3.86
1506 1815 1.520342 GGAGAGCAGCGCGAAGAAT 60.520 57.895 12.10 0.00 0.00 2.40
2177 2499 3.944087 ACCTGATAGGACTTTGCAGAAC 58.056 45.455 1.13 0.00 37.67 3.01
2247 2577 5.328886 GCACAGTTGAAATTGCCTAAAAC 57.671 39.130 0.00 0.00 0.00 2.43
2373 2709 7.372260 ACTATCTGAACTGCAAGATAAGGAT 57.628 36.000 7.15 0.24 37.43 3.24
2397 2733 6.595326 CACTGCAACAATACTCTCCTTTGATA 59.405 38.462 0.00 0.00 0.00 2.15
2462 2810 1.205657 CCGACACCCGAACAATATCG 58.794 55.000 0.00 0.00 41.76 2.92
2559 2914 2.111255 CAAAGGGGATGGATGGATGGAT 59.889 50.000 0.00 0.00 0.00 3.41
2560 2915 1.500303 CAAAGGGGATGGATGGATGGA 59.500 52.381 0.00 0.00 0.00 3.41
2561 2916 1.218704 ACAAAGGGGATGGATGGATGG 59.781 52.381 0.00 0.00 0.00 3.51
2562 2917 2.313317 CACAAAGGGGATGGATGGATG 58.687 52.381 0.00 0.00 0.00 3.51
2613 2968 1.235724 ACAAGGCGAAGTAGGTTTGC 58.764 50.000 0.00 0.00 44.11 3.68
2679 3036 5.019470 ACACCACATCACTCTCTGATTCTA 58.981 41.667 0.00 0.00 37.53 2.10
2683 3040 3.307269 CCAACACCACATCACTCTCTGAT 60.307 47.826 0.00 0.00 40.59 2.90
2865 3228 0.535335 GTATCGACAGGTTGCCTCCA 59.465 55.000 0.00 0.00 0.00 3.86
2999 3393 7.606456 AGAAAGAATATAAGCAACTTCGGTTCA 59.394 33.333 0.00 0.00 35.78 3.18
3000 3394 7.905493 CAGAAAGAATATAAGCAACTTCGGTTC 59.095 37.037 0.00 0.00 35.78 3.62
3001 3395 7.148239 CCAGAAAGAATATAAGCAACTTCGGTT 60.148 37.037 0.00 0.00 38.94 4.44
3002 3396 6.316390 CCAGAAAGAATATAAGCAACTTCGGT 59.684 38.462 0.00 0.00 0.00 4.69
3004 3398 6.037610 AGCCAGAAAGAATATAAGCAACTTCG 59.962 38.462 0.00 0.00 0.00 3.79
3005 3399 7.281999 AGAGCCAGAAAGAATATAAGCAACTTC 59.718 37.037 0.00 0.00 0.00 3.01
3006 3400 7.115414 AGAGCCAGAAAGAATATAAGCAACTT 58.885 34.615 0.00 0.00 0.00 2.66
3007 3401 6.657875 AGAGCCAGAAAGAATATAAGCAACT 58.342 36.000 0.00 0.00 0.00 3.16
3008 3402 6.934048 AGAGCCAGAAAGAATATAAGCAAC 57.066 37.500 0.00 0.00 0.00 4.17
3009 3403 7.147479 ACCTAGAGCCAGAAAGAATATAAGCAA 60.147 37.037 0.00 0.00 0.00 3.91
3010 3404 6.327626 ACCTAGAGCCAGAAAGAATATAAGCA 59.672 38.462 0.00 0.00 0.00 3.91
3011 3405 6.648725 CACCTAGAGCCAGAAAGAATATAAGC 59.351 42.308 0.00 0.00 0.00 3.09
3012 3406 7.158021 CCACCTAGAGCCAGAAAGAATATAAG 58.842 42.308 0.00 0.00 0.00 1.73
3013 3407 6.464465 GCCACCTAGAGCCAGAAAGAATATAA 60.464 42.308 0.00 0.00 0.00 0.98
3014 3408 5.012148 GCCACCTAGAGCCAGAAAGAATATA 59.988 44.000 0.00 0.00 0.00 0.86
3015 3409 4.202409 GCCACCTAGAGCCAGAAAGAATAT 60.202 45.833 0.00 0.00 0.00 1.28
3016 3410 3.134804 GCCACCTAGAGCCAGAAAGAATA 59.865 47.826 0.00 0.00 0.00 1.75
3017 3411 2.092699 GCCACCTAGAGCCAGAAAGAAT 60.093 50.000 0.00 0.00 0.00 2.40
3018 3412 1.279271 GCCACCTAGAGCCAGAAAGAA 59.721 52.381 0.00 0.00 0.00 2.52
3019 3413 0.905357 GCCACCTAGAGCCAGAAAGA 59.095 55.000 0.00 0.00 0.00 2.52
3020 3414 0.615331 TGCCACCTAGAGCCAGAAAG 59.385 55.000 0.00 0.00 0.00 2.62
3021 3415 1.064003 TTGCCACCTAGAGCCAGAAA 58.936 50.000 0.00 0.00 0.00 2.52
3022 3416 0.324943 GTTGCCACCTAGAGCCAGAA 59.675 55.000 0.00 0.00 0.00 3.02
3023 3417 1.553690 GGTTGCCACCTAGAGCCAGA 61.554 60.000 0.00 0.00 40.44 3.86
3024 3418 1.078143 GGTTGCCACCTAGAGCCAG 60.078 63.158 0.00 0.00 40.44 4.85
3025 3419 2.954684 CGGTTGCCACCTAGAGCCA 61.955 63.158 5.29 0.00 41.64 4.75
3026 3420 2.125106 CGGTTGCCACCTAGAGCC 60.125 66.667 5.29 0.00 41.64 4.70
3027 3421 2.820037 GCGGTTGCCACCTAGAGC 60.820 66.667 5.29 0.00 41.64 4.09
3028 3422 1.741770 GTGCGGTTGCCACCTAGAG 60.742 63.158 5.29 0.00 41.64 2.43
3029 3423 2.345991 GTGCGGTTGCCACCTAGA 59.654 61.111 5.29 0.00 41.64 2.43
3030 3424 2.746277 GGTGCGGTTGCCACCTAG 60.746 66.667 5.29 0.00 41.64 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.