Multiple sequence alignment - TraesCS5D01G037100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G037100 chr5D 100.000 3349 0 0 1 3349 36005978 36002630 0.000000e+00 6185.0
1 TraesCS5D01G037100 chr5D 77.778 756 99 34 1880 2609 22863943 22863231 5.200000e-108 401.0
2 TraesCS5D01G037100 chr5D 84.286 140 8 12 1013 1150 22864984 22864857 1.260000e-24 124.0
3 TraesCS5D01G037100 chr5A 90.830 1036 75 8 1839 2870 25095798 25094779 0.000000e+00 1369.0
4 TraesCS5D01G037100 chr5A 85.732 792 73 26 927 1700 25096849 25096080 0.000000e+00 800.0
5 TraesCS5D01G037100 chr5A 88.975 517 43 9 309 816 25099099 25098588 7.890000e-176 627.0
6 TraesCS5D01G037100 chr5A 95.965 347 12 2 2854 3198 25094327 25093981 2.260000e-156 562.0
7 TraesCS5D01G037100 chr5A 86.972 284 34 2 1 283 25108263 25107982 1.940000e-82 316.0
8 TraesCS5D01G037100 chr5A 89.552 134 11 2 2165 2297 16502793 16502662 2.070000e-37 167.0
9 TraesCS5D01G037100 chr5A 82.963 135 10 11 1013 1145 16649107 16648984 3.530000e-20 110.0
10 TraesCS5D01G037100 chr5A 82.963 135 10 11 1013 1145 16672868 16672745 3.530000e-20 110.0
11 TraesCS5D01G037100 chr5A 82.963 135 10 11 1013 1145 16684648 16684525 3.530000e-20 110.0
12 TraesCS5D01G037100 chr5A 82.222 135 11 11 1013 1145 16660985 16660862 1.640000e-18 104.0
13 TraesCS5D01G037100 chr5B 90.571 1050 71 10 1748 2775 26951615 26950572 0.000000e+00 1365.0
14 TraesCS5D01G037100 chr5B 87.285 755 50 18 947 1688 26952358 26951637 0.000000e+00 821.0
15 TraesCS5D01G037100 chr5B 91.489 47 4 0 832 878 688983522 688983476 7.760000e-07 65.8
16 TraesCS5D01G037100 chr5B 91.489 47 4 0 832 878 689073334 689073288 7.760000e-07 65.8
17 TraesCS5D01G037100 chr1B 87.214 962 73 19 1848 2802 597152260 597153178 0.000000e+00 1050.0
18 TraesCS5D01G037100 chr1B 95.070 284 12 2 948 1230 597151384 597151666 2.370000e-121 446.0
19 TraesCS5D01G037100 chr1B 84.712 399 53 6 2859 3249 597153715 597154113 3.130000e-105 392.0
20 TraesCS5D01G037100 chr1B 85.492 386 35 6 1484 1859 597151859 597152233 1.890000e-102 383.0
21 TraesCS5D01G037100 chr4A 91.837 49 3 1 831 878 623392460 623392508 2.160000e-07 67.6
22 TraesCS5D01G037100 chrUn 91.489 47 4 0 832 878 357158658 357158704 7.760000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G037100 chr5D 36002630 36005978 3348 True 6185.00 6185 100.0000 1 3349 1 chr5D.!!$R1 3348
1 TraesCS5D01G037100 chr5D 22863231 22864984 1753 True 262.50 401 81.0320 1013 2609 2 chr5D.!!$R2 1596
2 TraesCS5D01G037100 chr5A 25093981 25099099 5118 True 839.50 1369 90.3755 309 3198 4 chr5A.!!$R7 2889
3 TraesCS5D01G037100 chr5B 26950572 26952358 1786 True 1093.00 1365 88.9280 947 2775 2 chr5B.!!$R3 1828
4 TraesCS5D01G037100 chr1B 597151384 597154113 2729 False 567.75 1050 88.1220 948 3249 4 chr1B.!!$F1 2301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.108207 AGCTGATGCATAGGTGAGCC 59.892 55.0 0.0 0.0 42.74 4.70 F
1462 3374 0.036732 TGCCATCGTTCTTGCCTTCT 59.963 50.0 0.0 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 3420 0.027586 GCTCAACAACGAACGCAACT 59.972 50.0 0.00 0.00 0.00 3.16 R
3318 6096 0.176910 TGATTGTCCGCGCTAATCCA 59.823 50.0 18.82 9.35 31.47 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.596046 AAAATCGGCCCACACGCA 60.596 55.556 0.00 0.00 0.00 5.24
18 19 2.196925 AAAATCGGCCCACACGCAA 61.197 52.632 0.00 0.00 0.00 4.85
19 20 2.414840 AAAATCGGCCCACACGCAAC 62.415 55.000 0.00 0.00 0.00 4.17
25 26 2.978010 CCCACACGCAACCACCTC 60.978 66.667 0.00 0.00 0.00 3.85
26 27 2.203139 CCACACGCAACCACCTCA 60.203 61.111 0.00 0.00 0.00 3.86
27 28 1.821759 CCACACGCAACCACCTCAA 60.822 57.895 0.00 0.00 0.00 3.02
28 29 1.648720 CACACGCAACCACCTCAAG 59.351 57.895 0.00 0.00 0.00 3.02
29 30 1.095228 CACACGCAACCACCTCAAGT 61.095 55.000 0.00 0.00 0.00 3.16
30 31 0.466543 ACACGCAACCACCTCAAGTA 59.533 50.000 0.00 0.00 0.00 2.24
31 32 1.148310 CACGCAACCACCTCAAGTAG 58.852 55.000 0.00 0.00 0.00 2.57
32 33 0.756903 ACGCAACCACCTCAAGTAGT 59.243 50.000 0.00 0.00 0.00 2.73
33 34 1.148310 CGCAACCACCTCAAGTAGTG 58.852 55.000 0.00 0.00 0.00 2.74
34 35 0.875059 GCAACCACCTCAAGTAGTGC 59.125 55.000 0.00 0.00 32.48 4.40
35 36 1.523758 CAACCACCTCAAGTAGTGCC 58.476 55.000 0.00 0.00 32.48 5.01
36 37 0.400594 AACCACCTCAAGTAGTGCCC 59.599 55.000 0.00 0.00 32.48 5.36
37 38 1.299976 CCACCTCAAGTAGTGCCCC 59.700 63.158 0.00 0.00 32.48 5.80
38 39 1.299976 CACCTCAAGTAGTGCCCCC 59.700 63.158 0.00 0.00 0.00 5.40
80 81 2.568090 CCGTTGCTGGCCATCAAC 59.432 61.111 32.99 32.99 39.20 3.18
81 82 2.568090 CGTTGCTGGCCATCAACC 59.432 61.111 34.99 22.38 39.36 3.77
82 83 2.973082 GTTGCTGGCCATCAACCC 59.027 61.111 32.85 15.82 37.26 4.11
83 84 1.607467 GTTGCTGGCCATCAACCCT 60.607 57.895 32.85 0.00 37.26 4.34
84 85 1.304381 TTGCTGGCCATCAACCCTC 60.304 57.895 17.90 0.00 0.00 4.30
85 86 2.825836 GCTGGCCATCAACCCTCG 60.826 66.667 5.51 0.00 0.00 4.63
86 87 2.825836 CTGGCCATCAACCCTCGC 60.826 66.667 5.51 0.00 0.00 5.03
87 88 3.626996 CTGGCCATCAACCCTCGCA 62.627 63.158 5.51 0.00 0.00 5.10
88 89 2.825836 GGCCATCAACCCTCGCAG 60.826 66.667 0.00 0.00 0.00 5.18
89 90 2.045926 GCCATCAACCCTCGCAGT 60.046 61.111 0.00 0.00 0.00 4.40
90 91 2.401766 GCCATCAACCCTCGCAGTG 61.402 63.158 0.00 0.00 0.00 3.66
91 92 1.003355 CCATCAACCCTCGCAGTGT 60.003 57.895 0.00 0.00 0.00 3.55
92 93 1.300971 CCATCAACCCTCGCAGTGTG 61.301 60.000 0.00 0.00 0.00 3.82
93 94 0.603707 CATCAACCCTCGCAGTGTGT 60.604 55.000 3.13 0.00 0.00 3.72
94 95 0.603707 ATCAACCCTCGCAGTGTGTG 60.604 55.000 3.13 0.75 0.00 3.82
114 115 4.182433 GCCCCTCTGCCTAGCCAC 62.182 72.222 0.00 0.00 0.00 5.01
115 116 2.688666 CCCCTCTGCCTAGCCACA 60.689 66.667 0.00 0.00 0.00 4.17
116 117 2.586792 CCCTCTGCCTAGCCACAC 59.413 66.667 0.00 0.00 0.00 3.82
117 118 1.992277 CCCTCTGCCTAGCCACACT 60.992 63.158 0.00 0.00 0.00 3.55
118 119 1.220206 CCTCTGCCTAGCCACACTG 59.780 63.158 0.00 0.00 0.00 3.66
119 120 1.548357 CCTCTGCCTAGCCACACTGT 61.548 60.000 0.00 0.00 0.00 3.55
120 121 0.390866 CTCTGCCTAGCCACACTGTG 60.391 60.000 6.19 6.19 0.00 3.66
129 130 4.624364 CACACTGTGGCAGGCCGA 62.624 66.667 13.09 0.00 39.42 5.54
130 131 3.640407 ACACTGTGGCAGGCCGAT 61.640 61.111 13.09 0.00 39.42 4.18
131 132 2.821366 CACTGTGGCAGGCCGATC 60.821 66.667 5.74 0.00 39.42 3.69
132 133 3.005539 ACTGTGGCAGGCCGATCT 61.006 61.111 5.74 0.00 39.42 2.75
133 134 2.513204 CTGTGGCAGGCCGATCTG 60.513 66.667 5.74 0.00 39.42 2.90
134 135 4.100084 TGTGGCAGGCCGATCTGG 62.100 66.667 5.74 0.00 39.42 3.86
135 136 4.864334 GTGGCAGGCCGATCTGGG 62.864 72.222 5.74 0.00 39.42 4.45
143 144 2.350895 CCGATCTGGGCCACAACA 59.649 61.111 0.00 0.00 0.00 3.33
144 145 1.077501 CCGATCTGGGCCACAACAT 60.078 57.895 0.00 0.00 0.00 2.71
145 146 1.378882 CCGATCTGGGCCACAACATG 61.379 60.000 0.00 0.00 0.00 3.21
146 147 1.811860 GATCTGGGCCACAACATGC 59.188 57.895 0.00 0.00 0.00 4.06
147 148 0.966875 GATCTGGGCCACAACATGCA 60.967 55.000 0.00 0.00 0.00 3.96
148 149 1.252904 ATCTGGGCCACAACATGCAC 61.253 55.000 0.00 0.00 0.00 4.57
149 150 2.123554 TGGGCCACAACATGCACA 60.124 55.556 0.00 0.00 38.89 4.57
150 151 1.533513 TGGGCCACAACATGCACAT 60.534 52.632 0.00 0.00 35.60 3.21
151 152 1.079681 GGGCCACAACATGCACATG 60.080 57.895 4.39 9.06 44.15 3.21
152 153 1.079681 GGCCACAACATGCACATGG 60.080 57.895 14.73 0.00 42.91 3.66
153 154 1.079681 GCCACAACATGCACATGGG 60.080 57.895 14.73 8.85 42.91 4.00
154 155 1.534336 GCCACAACATGCACATGGGA 61.534 55.000 14.73 0.00 42.91 4.37
155 156 0.528924 CCACAACATGCACATGGGAG 59.471 55.000 14.73 6.62 42.91 4.30
156 157 0.528924 CACAACATGCACATGGGAGG 59.471 55.000 14.73 4.10 42.91 4.30
157 158 1.252904 ACAACATGCACATGGGAGGC 61.253 55.000 14.73 0.00 42.91 4.70
158 159 1.077086 AACATGCACATGGGAGGCA 59.923 52.632 14.73 2.19 42.91 4.75
159 160 0.542467 AACATGCACATGGGAGGCAA 60.542 50.000 14.73 0.00 42.91 4.52
160 161 0.968901 ACATGCACATGGGAGGCAAG 60.969 55.000 14.73 1.82 42.91 4.01
161 162 1.380785 ATGCACATGGGAGGCAAGG 60.381 57.895 0.00 0.00 41.43 3.61
162 163 2.757099 GCACATGGGAGGCAAGGG 60.757 66.667 0.00 0.00 0.00 3.95
163 164 3.089838 CACATGGGAGGCAAGGGA 58.910 61.111 0.00 0.00 0.00 4.20
164 165 1.077212 CACATGGGAGGCAAGGGAG 60.077 63.158 0.00 0.00 0.00 4.30
165 166 2.123982 CATGGGAGGCAAGGGAGC 60.124 66.667 0.00 0.00 0.00 4.70
173 174 4.232310 GCAAGGGAGCCTTAGCAG 57.768 61.111 0.00 0.00 42.67 4.24
174 175 2.117779 GCAAGGGAGCCTTAGCAGC 61.118 63.158 0.00 0.00 42.67 5.25
175 176 1.452833 CAAGGGAGCCTTAGCAGCC 60.453 63.158 0.00 0.00 42.67 4.85
177 178 4.196778 GGGAGCCTTAGCAGCCCC 62.197 72.222 5.06 0.00 45.42 5.80
178 179 3.411517 GGAGCCTTAGCAGCCCCA 61.412 66.667 0.00 0.00 43.56 4.96
179 180 2.761465 GGAGCCTTAGCAGCCCCAT 61.761 63.158 0.00 0.00 43.56 4.00
180 181 1.228094 GAGCCTTAGCAGCCCCATC 60.228 63.158 0.00 0.00 43.56 3.51
181 182 2.203408 GCCTTAGCAGCCCCATCC 60.203 66.667 0.00 0.00 39.53 3.51
182 183 3.060614 GCCTTAGCAGCCCCATCCA 62.061 63.158 0.00 0.00 39.53 3.41
183 184 1.152881 CCTTAGCAGCCCCATCCAC 60.153 63.158 0.00 0.00 0.00 4.02
184 185 1.152881 CTTAGCAGCCCCATCCACC 60.153 63.158 0.00 0.00 0.00 4.61
185 186 1.925285 CTTAGCAGCCCCATCCACCA 61.925 60.000 0.00 0.00 0.00 4.17
186 187 2.210144 TTAGCAGCCCCATCCACCAC 62.210 60.000 0.00 0.00 0.00 4.16
188 189 4.802051 CAGCCCCATCCACCACCG 62.802 72.222 0.00 0.00 0.00 4.94
190 191 3.809013 GCCCCATCCACCACCGAT 61.809 66.667 0.00 0.00 0.00 4.18
191 192 2.192979 CCCCATCCACCACCGATG 59.807 66.667 0.00 0.00 37.46 3.84
192 193 2.516930 CCCATCCACCACCGATGC 60.517 66.667 0.00 0.00 36.58 3.91
193 194 2.271821 CCATCCACCACCGATGCA 59.728 61.111 0.00 0.00 36.58 3.96
194 195 1.378382 CCATCCACCACCGATGCAA 60.378 57.895 0.00 0.00 36.58 4.08
195 196 1.656818 CCATCCACCACCGATGCAAC 61.657 60.000 0.00 0.00 36.58 4.17
196 197 0.959867 CATCCACCACCGATGCAACA 60.960 55.000 0.00 0.00 31.37 3.33
197 198 0.251121 ATCCACCACCGATGCAACAA 60.251 50.000 0.00 0.00 0.00 2.83
198 199 1.169661 TCCACCACCGATGCAACAAC 61.170 55.000 0.00 0.00 0.00 3.32
199 200 1.451337 CCACCACCGATGCAACAACA 61.451 55.000 0.00 0.00 0.00 3.33
200 201 0.383590 CACCACCGATGCAACAACAA 59.616 50.000 0.00 0.00 0.00 2.83
201 202 0.667993 ACCACCGATGCAACAACAAG 59.332 50.000 0.00 0.00 0.00 3.16
202 203 0.664166 CCACCGATGCAACAACAAGC 60.664 55.000 0.00 0.00 0.00 4.01
203 204 0.311790 CACCGATGCAACAACAAGCT 59.688 50.000 0.00 0.00 0.00 3.74
204 205 0.311790 ACCGATGCAACAACAAGCTG 59.688 50.000 0.00 0.00 0.00 4.24
205 206 0.592637 CCGATGCAACAACAAGCTGA 59.407 50.000 0.00 0.00 0.00 4.26
206 207 1.200716 CCGATGCAACAACAAGCTGAT 59.799 47.619 0.00 0.00 0.00 2.90
207 208 2.247637 CGATGCAACAACAAGCTGATG 58.752 47.619 0.00 0.00 0.00 3.07
208 209 1.990563 GATGCAACAACAAGCTGATGC 59.009 47.619 0.00 0.00 43.34 3.91
209 210 3.573569 GCAACAACAAGCTGATGCA 57.426 47.368 0.00 0.00 42.77 3.96
210 211 1.341852 TGCAACAACAAGCTGATGCAT 59.658 42.857 0.00 0.00 46.38 3.96
211 212 2.557490 TGCAACAACAAGCTGATGCATA 59.443 40.909 0.00 0.00 46.38 3.14
212 213 3.176708 GCAACAACAAGCTGATGCATAG 58.823 45.455 0.00 0.00 42.77 2.23
213 214 3.766151 CAACAACAAGCTGATGCATAGG 58.234 45.455 0.00 0.00 42.74 2.57
214 215 3.077484 ACAACAAGCTGATGCATAGGT 57.923 42.857 0.00 0.44 42.74 3.08
215 216 2.751259 ACAACAAGCTGATGCATAGGTG 59.249 45.455 0.00 0.00 42.74 4.00
216 217 3.011818 CAACAAGCTGATGCATAGGTGA 58.988 45.455 0.00 0.00 42.74 4.02
217 218 2.915349 ACAAGCTGATGCATAGGTGAG 58.085 47.619 0.00 3.46 42.74 3.51
218 219 1.602851 CAAGCTGATGCATAGGTGAGC 59.397 52.381 0.00 2.61 42.74 4.26
219 220 0.108207 AGCTGATGCATAGGTGAGCC 59.892 55.000 0.00 0.00 42.74 4.70
220 221 0.888285 GCTGATGCATAGGTGAGCCC 60.888 60.000 0.00 0.00 39.41 5.19
221 222 0.250640 CTGATGCATAGGTGAGCCCC 60.251 60.000 0.00 0.00 34.57 5.80
222 223 0.987613 TGATGCATAGGTGAGCCCCA 60.988 55.000 0.00 0.00 34.57 4.96
223 224 0.536006 GATGCATAGGTGAGCCCCAC 60.536 60.000 0.00 0.00 44.95 4.61
264 265 3.900892 CGAGCCCTGCCGTCGTAT 61.901 66.667 0.00 0.00 0.00 3.06
265 266 2.279517 GAGCCCTGCCGTCGTATG 60.280 66.667 0.00 0.00 0.00 2.39
266 267 4.530857 AGCCCTGCCGTCGTATGC 62.531 66.667 0.00 0.00 0.00 3.14
270 271 4.873129 CTGCCGTCGTATGCCGCT 62.873 66.667 0.00 0.00 36.19 5.52
271 272 4.444838 TGCCGTCGTATGCCGCTT 62.445 61.111 0.00 0.00 36.19 4.68
272 273 3.925238 GCCGTCGTATGCCGCTTG 61.925 66.667 0.00 0.00 36.19 4.01
273 274 2.202690 CCGTCGTATGCCGCTTGA 60.203 61.111 0.00 0.00 36.19 3.02
274 275 1.807981 CCGTCGTATGCCGCTTGAA 60.808 57.895 0.00 0.00 36.19 2.69
275 276 1.631072 CGTCGTATGCCGCTTGAAG 59.369 57.895 0.00 0.00 36.19 3.02
276 277 0.800683 CGTCGTATGCCGCTTGAAGA 60.801 55.000 0.00 0.00 36.19 2.87
277 278 0.645868 GTCGTATGCCGCTTGAAGAC 59.354 55.000 0.00 0.00 36.19 3.01
278 279 0.459585 TCGTATGCCGCTTGAAGACC 60.460 55.000 0.00 0.00 36.19 3.85
279 280 1.752501 CGTATGCCGCTTGAAGACCG 61.753 60.000 0.00 0.00 0.00 4.79
280 281 1.813753 TATGCCGCTTGAAGACCGC 60.814 57.895 0.00 0.00 0.00 5.68
281 282 2.514510 TATGCCGCTTGAAGACCGCA 62.515 55.000 0.00 0.00 0.00 5.69
282 283 3.793144 GCCGCTTGAAGACCGCAG 61.793 66.667 0.00 0.00 0.00 5.18
283 284 2.357517 CCGCTTGAAGACCGCAGT 60.358 61.111 0.00 0.00 0.00 4.40
284 285 2.383527 CCGCTTGAAGACCGCAGTC 61.384 63.158 0.00 0.00 43.89 3.51
285 286 1.664649 CGCTTGAAGACCGCAGTCA 60.665 57.895 2.32 0.00 46.15 3.41
286 287 1.016130 CGCTTGAAGACCGCAGTCAT 61.016 55.000 2.32 0.00 46.15 3.06
287 288 0.723981 GCTTGAAGACCGCAGTCATC 59.276 55.000 2.32 0.17 46.15 2.92
288 289 0.994995 CTTGAAGACCGCAGTCATCG 59.005 55.000 2.32 0.00 46.15 3.84
289 290 1.014044 TTGAAGACCGCAGTCATCGC 61.014 55.000 2.32 0.00 46.15 4.58
290 291 2.125512 AAGACCGCAGTCATCGCC 60.126 61.111 2.32 0.00 46.15 5.54
291 292 3.989698 AAGACCGCAGTCATCGCCG 62.990 63.158 2.32 0.00 46.15 6.46
292 293 4.492160 GACCGCAGTCATCGCCGA 62.492 66.667 0.00 0.00 42.99 5.54
293 294 3.774959 GACCGCAGTCATCGCCGAT 62.775 63.158 0.00 0.00 42.99 4.18
294 295 3.333189 CCGCAGTCATCGCCGATG 61.333 66.667 20.70 20.70 41.00 3.84
295 296 3.993234 CGCAGTCATCGCCGATGC 61.993 66.667 21.83 16.17 39.63 3.91
296 297 2.891936 GCAGTCATCGCCGATGCA 60.892 61.111 21.83 8.50 39.63 3.96
297 298 2.879070 GCAGTCATCGCCGATGCAG 61.879 63.158 21.83 14.17 39.63 4.41
298 299 1.520120 CAGTCATCGCCGATGCAGT 60.520 57.895 21.83 10.89 39.63 4.40
299 300 1.520120 AGTCATCGCCGATGCAGTG 60.520 57.895 21.83 0.00 39.63 3.66
300 301 2.891936 TCATCGCCGATGCAGTGC 60.892 61.111 21.83 8.58 39.63 4.40
301 302 3.197092 CATCGCCGATGCAGTGCA 61.197 61.111 22.22 22.22 44.86 4.57
441 446 1.378646 GAAGGAAAAGGGGAGGCGG 60.379 63.158 0.00 0.00 0.00 6.13
442 447 2.138453 GAAGGAAAAGGGGAGGCGGT 62.138 60.000 0.00 0.00 0.00 5.68
491 496 2.758089 GCAGGCAAGAGCGACATGG 61.758 63.158 0.00 0.00 43.41 3.66
492 497 1.376424 CAGGCAAGAGCGACATGGT 60.376 57.895 0.00 0.00 43.41 3.55
493 498 1.376424 AGGCAAGAGCGACATGGTG 60.376 57.895 0.00 0.00 43.41 4.17
494 499 2.401766 GGCAAGAGCGACATGGTGG 61.402 63.158 0.00 0.00 43.41 4.61
495 500 2.401766 GCAAGAGCGACATGGTGGG 61.402 63.158 0.00 0.00 0.00 4.61
496 501 1.003355 CAAGAGCGACATGGTGGGT 60.003 57.895 0.00 0.00 0.00 4.51
603 612 9.489084 TCTAAAGTTATATTCCATTCATCACCG 57.511 33.333 0.00 0.00 0.00 4.94
615 624 6.270000 TCCATTCATCACCGAGGAGTAATATT 59.730 38.462 0.00 0.00 0.00 1.28
619 628 7.119709 TCATCACCGAGGAGTAATATTTTCA 57.880 36.000 0.00 0.00 0.00 2.69
626 635 8.871125 ACCGAGGAGTAATATTTTCATATCTGT 58.129 33.333 0.00 0.00 0.00 3.41
692 701 7.104043 ACACCATCAATTAATGTCAGAATGG 57.896 36.000 0.00 0.00 35.52 3.16
737 746 7.657336 ACCACCTAAAATAAATTGTCAGTGTG 58.343 34.615 0.00 0.00 0.00 3.82
739 748 7.255801 CCACCTAAAATAAATTGTCAGTGTGGT 60.256 37.037 0.00 0.00 33.96 4.16
867 1321 9.474920 AATTGTTTAGATTGTTTACCACATGTG 57.525 29.630 19.31 19.31 34.43 3.21
869 1323 7.644490 TGTTTAGATTGTTTACCACATGTGTC 58.356 34.615 23.79 12.17 34.43 3.67
870 1324 7.283354 TGTTTAGATTGTTTACCACATGTGTCA 59.717 33.333 23.79 8.71 34.43 3.58
880 1334 1.337387 CACATGTGTCATGTGGTGCAA 59.663 47.619 25.74 0.00 44.04 4.08
882 1336 2.429971 ACATGTGTCATGTGGTGCAAAA 59.570 40.909 13.47 0.00 0.00 2.44
883 1337 3.069872 ACATGTGTCATGTGGTGCAAAAT 59.930 39.130 13.47 0.00 0.00 1.82
884 1338 3.095102 TGTGTCATGTGGTGCAAAATG 57.905 42.857 0.00 0.00 0.00 2.32
885 1339 2.429971 TGTGTCATGTGGTGCAAAATGT 59.570 40.909 0.00 0.00 0.00 2.71
886 1340 3.633986 TGTGTCATGTGGTGCAAAATGTA 59.366 39.130 0.00 0.00 0.00 2.29
887 1341 4.098501 TGTGTCATGTGGTGCAAAATGTAA 59.901 37.500 0.00 0.00 0.00 2.41
889 1343 6.015940 TGTGTCATGTGGTGCAAAATGTAATA 60.016 34.615 0.00 0.00 0.00 0.98
890 1344 6.527722 GTGTCATGTGGTGCAAAATGTAATAG 59.472 38.462 0.00 0.00 0.00 1.73
891 1345 6.432472 TGTCATGTGGTGCAAAATGTAATAGA 59.568 34.615 0.00 0.00 0.00 1.98
892 1346 6.968904 GTCATGTGGTGCAAAATGTAATAGAG 59.031 38.462 0.00 0.00 0.00 2.43
894 1348 5.565509 TGTGGTGCAAAATGTAATAGAGGA 58.434 37.500 0.00 0.00 0.00 3.71
896 1350 5.648092 GTGGTGCAAAATGTAATAGAGGAGT 59.352 40.000 0.00 0.00 0.00 3.85
898 1352 6.821665 TGGTGCAAAATGTAATAGAGGAGTAC 59.178 38.462 0.00 0.00 0.00 2.73
899 1353 6.018994 GGTGCAAAATGTAATAGAGGAGTACG 60.019 42.308 0.00 0.00 30.99 3.67
900 1354 6.534079 GTGCAAAATGTAATAGAGGAGTACGT 59.466 38.462 0.00 0.00 30.99 3.57
901 1355 7.064253 GTGCAAAATGTAATAGAGGAGTACGTT 59.936 37.037 0.00 0.00 39.03 3.99
902 1356 7.604927 TGCAAAATGTAATAGAGGAGTACGTTT 59.395 33.333 0.00 0.00 45.26 3.60
910 1364 9.631452 GTAATAGAGGAGTACGTTTTTAAGTGT 57.369 33.333 0.00 0.00 0.00 3.55
914 1368 8.120140 AGAGGAGTACGTTTTTAAGTGTATCT 57.880 34.615 0.00 0.00 0.00 1.98
916 1370 9.283420 GAGGAGTACGTTTTTAAGTGTATCTAC 57.717 37.037 0.00 0.00 0.00 2.59
917 1371 8.246871 AGGAGTACGTTTTTAAGTGTATCTACC 58.753 37.037 0.00 0.00 0.00 3.18
918 1372 7.218963 GGAGTACGTTTTTAAGTGTATCTACCG 59.781 40.741 0.00 0.00 0.00 4.02
919 1373 7.029563 AGTACGTTTTTAAGTGTATCTACCGG 58.970 38.462 0.00 0.00 0.00 5.28
922 1376 5.863397 CGTTTTTAAGTGTATCTACCGGTGA 59.137 40.000 19.93 13.35 0.00 4.02
923 1377 6.365789 CGTTTTTAAGTGTATCTACCGGTGAA 59.634 38.462 19.93 5.07 0.00 3.18
924 1378 7.095691 CGTTTTTAAGTGTATCTACCGGTGAAA 60.096 37.037 19.93 2.03 0.00 2.69
925 1379 8.558700 GTTTTTAAGTGTATCTACCGGTGAAAA 58.441 33.333 19.93 5.67 0.00 2.29
967 2606 2.007608 GAATCGGGGAAGGAAACGAAG 58.992 52.381 0.00 0.00 38.94 3.79
1209 2848 4.200283 CGCCTCCTCGTGAGCCTC 62.200 72.222 0.00 0.00 39.98 4.70
1210 2849 3.844090 GCCTCCTCGTGAGCCTCC 61.844 72.222 0.00 0.00 39.98 4.30
1212 2851 3.151022 CTCCTCGTGAGCCTCCCC 61.151 72.222 0.00 0.00 33.47 4.81
1213 2852 3.670629 CTCCTCGTGAGCCTCCCCT 62.671 68.421 0.00 0.00 33.47 4.79
1214 2853 3.151022 CCTCGTGAGCCTCCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
1230 2873 2.543637 TCCCCTCCCTCCCTCCTT 60.544 66.667 0.00 0.00 0.00 3.36
1253 2899 1.124477 CCAGATCTACCTGCCCCCTC 61.124 65.000 0.00 0.00 32.97 4.30
1281 2935 1.874466 GCTCCTCGACGCTTGCTAC 60.874 63.158 0.00 0.00 0.00 3.58
1299 2965 2.311124 ACTTATCGCACTAGCCCAAC 57.689 50.000 0.00 0.00 37.52 3.77
1320 3206 8.593679 CCCAACTATAATTTAATTTCCCCCATC 58.406 37.037 0.00 0.00 0.00 3.51
1332 3218 4.894252 TTCCCCCATCTACTACTGTAGT 57.106 45.455 22.72 22.72 44.74 2.73
1348 3234 8.936509 CTACTGTAGTAGTACAATCATTAGCG 57.063 38.462 11.49 0.05 42.22 4.26
1359 3245 6.355397 ACAATCATTAGCGTTCATTCAGAG 57.645 37.500 0.00 0.00 0.00 3.35
1372 3272 6.455646 CGTTCATTCAGAGAATTACCTTTCCG 60.456 42.308 0.00 0.00 0.00 4.30
1452 3364 1.951510 CACAAGCTGTGCCATCGTT 59.048 52.632 3.83 0.00 41.89 3.85
1455 3367 0.877071 CAAGCTGTGCCATCGTTCTT 59.123 50.000 0.00 0.00 0.00 2.52
1456 3368 0.877071 AAGCTGTGCCATCGTTCTTG 59.123 50.000 0.00 0.00 0.00 3.02
1457 3369 1.154150 GCTGTGCCATCGTTCTTGC 60.154 57.895 0.00 0.00 0.00 4.01
1458 3370 1.503542 CTGTGCCATCGTTCTTGCC 59.496 57.895 0.00 0.00 0.00 4.52
1459 3371 0.957395 CTGTGCCATCGTTCTTGCCT 60.957 55.000 0.00 0.00 0.00 4.75
1461 3373 0.169009 GTGCCATCGTTCTTGCCTTC 59.831 55.000 0.00 0.00 0.00 3.46
1462 3374 0.036732 TGCCATCGTTCTTGCCTTCT 59.963 50.000 0.00 0.00 0.00 2.85
1482 3394 6.767902 CCTTCTTGGAGCAGCTTGTTATATTA 59.232 38.462 0.00 0.00 38.35 0.98
1674 3613 0.684535 TCGGATGTGAGTGGCTTTCA 59.315 50.000 0.00 0.00 0.00 2.69
1696 3637 4.118093 CCGAATTTAATTGGGTGGGAAC 57.882 45.455 10.05 0.00 33.92 3.62
1700 3646 6.327154 CGAATTTAATTGGGTGGGAACTAAC 58.673 40.000 0.00 0.00 0.00 2.34
1704 3650 3.825908 ATTGGGTGGGAACTAACACAT 57.174 42.857 0.00 0.00 39.31 3.21
1706 3652 1.777878 TGGGTGGGAACTAACACATGT 59.222 47.619 0.00 0.00 39.31 3.21
1726 3838 4.361420 TGTTGTTGTTTCGTCAGTATCGA 58.639 39.130 0.00 0.00 35.50 3.59
1729 3841 5.756950 TGTTGTTTCGTCAGTATCGATTC 57.243 39.130 1.71 0.00 37.18 2.52
1733 3845 5.475719 TGTTTCGTCAGTATCGATTCCTTT 58.524 37.500 1.71 0.00 37.18 3.11
1743 3855 2.368439 TCGATTCCTTTGCTCCATTGG 58.632 47.619 0.00 0.00 0.00 3.16
1846 3969 7.996644 ACCCAACTCTAAAAGTAAATTCACAGA 59.003 33.333 0.00 0.00 37.17 3.41
1877 4108 9.534565 TGAGCTCATAAAGTTACATTATCAGAC 57.465 33.333 13.74 0.00 0.00 3.51
1878 4109 8.581057 AGCTCATAAAGTTACATTATCAGACG 57.419 34.615 0.00 0.00 0.00 4.18
1890 4121 6.299141 ACATTATCAGACGGCCAATAATCTT 58.701 36.000 2.24 0.00 0.00 2.40
1928 4160 0.542938 TCCACTCTGCTAGCACCAGT 60.543 55.000 14.93 15.56 0.00 4.00
1929 4161 1.186200 CCACTCTGCTAGCACCAGTA 58.814 55.000 14.93 0.00 0.00 2.74
1930 4162 1.134965 CCACTCTGCTAGCACCAGTAC 60.135 57.143 14.93 0.00 0.00 2.73
1931 4163 1.134965 CACTCTGCTAGCACCAGTACC 60.135 57.143 14.93 0.00 0.00 3.34
1932 4164 1.186200 CTCTGCTAGCACCAGTACCA 58.814 55.000 14.93 0.00 0.00 3.25
1933 4165 1.135915 CTCTGCTAGCACCAGTACCAG 59.864 57.143 14.93 0.34 0.00 4.00
1937 4169 1.136500 GCTAGCACCAGTACCAGGTAC 59.864 57.143 20.90 20.90 37.23 3.34
1944 4176 2.111384 CCAGTACCAGGTACAGATGCT 58.889 52.381 28.36 6.80 41.03 3.79
1973 4206 8.353684 TGAACACCATAAATCATTGTTTACGTT 58.646 29.630 0.00 0.00 30.60 3.99
1982 4215 7.945033 AATCATTGTTTACGTTGCAAATTCT 57.055 28.000 0.00 0.00 0.00 2.40
1986 4219 3.794028 TGTTTACGTTGCAAATTCTGTGC 59.206 39.130 0.00 0.00 42.55 4.57
2117 4359 5.120054 TGGATGACCATGTCAATCTTGAT 57.880 39.130 0.46 0.00 45.96 2.57
2125 4367 5.220381 CCATGTCAATCTTGATGCATTAGC 58.780 41.667 0.00 0.00 39.73 3.09
2175 4417 6.201044 ACTTCTGAAGTTCTTGTGATTGTACG 59.799 38.462 17.00 0.00 39.04 3.67
2361 4606 0.532862 ACTGTGAAGGTGTCCTTGCG 60.533 55.000 5.73 0.00 44.82 4.85
2403 4658 3.988379 TTGCTCTTGTTTACTTGGCAG 57.012 42.857 0.00 0.00 0.00 4.85
2478 4741 5.244785 TCAGGAGTTTGCTACATACTACG 57.755 43.478 0.00 0.00 32.75 3.51
2496 4759 5.242434 ACTACGATGACCTTTGCATGTTTA 58.758 37.500 0.00 0.00 0.00 2.01
2510 4773 8.795786 TTTGCATGTTTAATTACAGAGTTGAC 57.204 30.769 0.00 0.00 0.00 3.18
2579 4842 3.562557 ACAAAGGTACCGTGAACATGAAC 59.437 43.478 21.41 0.00 0.00 3.18
2600 4863 3.901844 ACAAGTCTGACTACCAAAGGCTA 59.098 43.478 11.30 0.00 32.57 3.93
2609 4872 6.303839 TGACTACCAAAGGCTAAAGACAAAT 58.696 36.000 0.00 0.00 32.57 2.32
2614 4877 7.215719 ACCAAAGGCTAAAGACAAATACTTC 57.784 36.000 0.00 0.00 0.00 3.01
2643 4910 8.429641 AGGATCAAGGCTAATCGATTTAACTAA 58.570 33.333 17.19 4.92 0.00 2.24
2644 4911 9.220767 GGATCAAGGCTAATCGATTTAACTAAT 57.779 33.333 17.19 8.90 0.00 1.73
2847 5114 5.859205 ATCAACAGAAGCCTTTTGTTCTT 57.141 34.783 10.16 0.00 33.06 2.52
2848 5115 5.248870 TCAACAGAAGCCTTTTGTTCTTC 57.751 39.130 10.16 0.00 37.17 2.87
2849 5116 4.704540 TCAACAGAAGCCTTTTGTTCTTCA 59.295 37.500 10.16 0.00 38.83 3.02
2850 5117 4.907879 ACAGAAGCCTTTTGTTCTTCAG 57.092 40.909 0.00 0.00 38.83 3.02
2851 5118 3.067320 ACAGAAGCCTTTTGTTCTTCAGC 59.933 43.478 0.00 0.00 38.83 4.26
2919 5693 9.860898 AAACTTATCACCATCTTTTCTTATTGC 57.139 29.630 0.00 0.00 0.00 3.56
2923 5697 5.332743 TCACCATCTTTTCTTATTGCCCTT 58.667 37.500 0.00 0.00 0.00 3.95
3056 5834 0.884704 ACGCCGATATGATTGCCACC 60.885 55.000 0.00 0.00 0.00 4.61
3103 5881 1.133823 AGATGTTTGGCCGGCATATCA 60.134 47.619 30.85 21.00 0.00 2.15
3104 5882 1.888512 GATGTTTGGCCGGCATATCAT 59.111 47.619 30.85 24.53 0.00 2.45
3221 5999 2.050350 GCACCCTCATGCAGCATGT 61.050 57.895 30.38 12.31 45.39 3.21
3237 6015 2.927477 GCATGTTTGTGATGATGCAAGG 59.073 45.455 0.00 0.00 40.78 3.61
3249 6027 2.224426 TGATGCAAGGGTTCGTAACTGT 60.224 45.455 0.00 0.00 0.00 3.55
3250 6028 2.335316 TGCAAGGGTTCGTAACTGTT 57.665 45.000 0.00 0.00 0.00 3.16
3251 6029 2.645802 TGCAAGGGTTCGTAACTGTTT 58.354 42.857 0.00 0.00 0.00 2.83
3252 6030 2.614983 TGCAAGGGTTCGTAACTGTTTC 59.385 45.455 0.00 0.00 0.00 2.78
3253 6031 2.876550 GCAAGGGTTCGTAACTGTTTCT 59.123 45.455 0.00 0.00 0.00 2.52
3254 6032 4.060205 GCAAGGGTTCGTAACTGTTTCTA 58.940 43.478 0.00 0.00 0.00 2.10
3255 6033 4.512571 GCAAGGGTTCGTAACTGTTTCTAA 59.487 41.667 0.00 0.00 0.00 2.10
3256 6034 5.559608 GCAAGGGTTCGTAACTGTTTCTAAC 60.560 44.000 0.00 2.30 0.00 2.34
3257 6035 4.635223 AGGGTTCGTAACTGTTTCTAACC 58.365 43.478 18.90 18.90 35.30 2.85
3258 6036 4.101430 AGGGTTCGTAACTGTTTCTAACCA 59.899 41.667 24.49 0.00 37.27 3.67
3259 6037 4.450080 GGGTTCGTAACTGTTTCTAACCAG 59.550 45.833 24.49 0.00 37.27 4.00
3260 6038 5.052481 GGTTCGTAACTGTTTCTAACCAGT 58.948 41.667 20.90 0.00 35.93 4.00
3261 6039 5.176406 GGTTCGTAACTGTTTCTAACCAGTC 59.824 44.000 20.90 2.53 35.93 3.51
3262 6040 5.518848 TCGTAACTGTTTCTAACCAGTCA 57.481 39.130 0.00 0.00 0.00 3.41
3263 6041 6.092955 TCGTAACTGTTTCTAACCAGTCAT 57.907 37.500 0.00 0.00 0.00 3.06
3264 6042 5.924254 TCGTAACTGTTTCTAACCAGTCATG 59.076 40.000 0.00 0.00 0.00 3.07
3265 6043 5.694910 CGTAACTGTTTCTAACCAGTCATGT 59.305 40.000 0.00 0.00 0.00 3.21
3266 6044 6.202188 CGTAACTGTTTCTAACCAGTCATGTT 59.798 38.462 0.00 0.00 0.00 2.71
3267 6045 6.377327 AACTGTTTCTAACCAGTCATGTTG 57.623 37.500 0.00 0.00 0.00 3.33
3268 6046 4.821805 ACTGTTTCTAACCAGTCATGTTGG 59.178 41.667 14.73 14.73 41.60 3.77
3276 6054 4.365514 ACCAGTCATGTTGGTTACATCA 57.634 40.909 15.81 0.00 46.57 3.07
3277 6055 4.724399 ACCAGTCATGTTGGTTACATCAA 58.276 39.130 15.81 0.00 46.57 2.57
3278 6056 4.761739 ACCAGTCATGTTGGTTACATCAAG 59.238 41.667 15.81 0.00 46.57 3.02
3279 6057 5.003160 CCAGTCATGTTGGTTACATCAAGA 58.997 41.667 9.86 0.00 45.71 3.02
3280 6058 5.649395 CCAGTCATGTTGGTTACATCAAGAT 59.351 40.000 9.86 0.00 45.71 2.40
3281 6059 6.183360 CCAGTCATGTTGGTTACATCAAGATC 60.183 42.308 9.86 0.00 45.71 2.75
3282 6060 6.372381 CAGTCATGTTGGTTACATCAAGATCA 59.628 38.462 0.00 0.00 45.71 2.92
3283 6061 7.066645 CAGTCATGTTGGTTACATCAAGATCAT 59.933 37.037 0.00 0.00 45.71 2.45
3284 6062 7.281774 AGTCATGTTGGTTACATCAAGATCATC 59.718 37.037 0.00 0.00 45.71 2.92
3285 6063 7.066163 GTCATGTTGGTTACATCAAGATCATCA 59.934 37.037 0.00 0.00 45.71 3.07
3286 6064 6.741992 TGTTGGTTACATCAAGATCATCAC 57.258 37.500 0.00 0.00 0.00 3.06
3287 6065 6.237154 TGTTGGTTACATCAAGATCATCACA 58.763 36.000 0.00 0.00 0.00 3.58
3288 6066 6.149308 TGTTGGTTACATCAAGATCATCACAC 59.851 38.462 0.00 0.00 0.00 3.82
3289 6067 5.803552 TGGTTACATCAAGATCATCACACA 58.196 37.500 0.00 0.00 0.00 3.72
3290 6068 5.876460 TGGTTACATCAAGATCATCACACAG 59.124 40.000 0.00 0.00 0.00 3.66
3291 6069 5.295292 GGTTACATCAAGATCATCACACAGG 59.705 44.000 0.00 0.00 0.00 4.00
3292 6070 3.276857 ACATCAAGATCATCACACAGGC 58.723 45.455 0.00 0.00 0.00 4.85
3293 6071 3.275999 CATCAAGATCATCACACAGGCA 58.724 45.455 0.00 0.00 0.00 4.75
3294 6072 3.421919 TCAAGATCATCACACAGGCAA 57.578 42.857 0.00 0.00 0.00 4.52
3295 6073 3.076621 TCAAGATCATCACACAGGCAAC 58.923 45.455 0.00 0.00 0.00 4.17
3296 6074 2.815503 CAAGATCATCACACAGGCAACA 59.184 45.455 0.00 0.00 41.41 3.33
3297 6075 2.430465 AGATCATCACACAGGCAACAC 58.570 47.619 0.00 0.00 41.41 3.32
3298 6076 2.153645 GATCATCACACAGGCAACACA 58.846 47.619 0.00 0.00 41.41 3.72
3299 6077 1.596603 TCATCACACAGGCAACACAG 58.403 50.000 0.00 0.00 41.41 3.66
3300 6078 1.134128 TCATCACACAGGCAACACAGT 60.134 47.619 0.00 0.00 41.41 3.55
3301 6079 2.103941 TCATCACACAGGCAACACAGTA 59.896 45.455 0.00 0.00 41.41 2.74
3302 6080 2.700722 TCACACAGGCAACACAGTAA 57.299 45.000 0.00 0.00 41.41 2.24
3303 6081 2.285083 TCACACAGGCAACACAGTAAC 58.715 47.619 0.00 0.00 41.41 2.50
3304 6082 1.333619 CACACAGGCAACACAGTAACC 59.666 52.381 0.00 0.00 41.41 2.85
3305 6083 1.065053 ACACAGGCAACACAGTAACCA 60.065 47.619 0.00 0.00 41.41 3.67
3306 6084 2.020720 CACAGGCAACACAGTAACCAA 58.979 47.619 0.00 0.00 41.41 3.67
3307 6085 2.425312 CACAGGCAACACAGTAACCAAA 59.575 45.455 0.00 0.00 41.41 3.28
3308 6086 3.068024 CACAGGCAACACAGTAACCAAAT 59.932 43.478 0.00 0.00 41.41 2.32
3309 6087 3.317993 ACAGGCAACACAGTAACCAAATC 59.682 43.478 0.00 0.00 41.41 2.17
3310 6088 3.317711 CAGGCAACACAGTAACCAAATCA 59.682 43.478 0.00 0.00 41.41 2.57
3311 6089 4.022068 CAGGCAACACAGTAACCAAATCAT 60.022 41.667 0.00 0.00 41.41 2.45
3312 6090 4.022068 AGGCAACACAGTAACCAAATCATG 60.022 41.667 0.00 0.00 41.41 3.07
3327 6105 6.758593 CAAATCATGGAAATTGGATTAGCG 57.241 37.500 0.00 0.00 30.29 4.26
3328 6106 3.988379 TCATGGAAATTGGATTAGCGC 57.012 42.857 0.00 0.00 0.00 5.92
3329 6107 2.290367 TCATGGAAATTGGATTAGCGCG 59.710 45.455 0.00 0.00 0.00 6.86
3330 6108 1.021202 TGGAAATTGGATTAGCGCGG 58.979 50.000 8.83 0.00 0.00 6.46
3331 6109 1.305201 GGAAATTGGATTAGCGCGGA 58.695 50.000 8.83 0.00 0.00 5.54
3332 6110 1.002792 GGAAATTGGATTAGCGCGGAC 60.003 52.381 8.83 0.00 0.00 4.79
3333 6111 1.668751 GAAATTGGATTAGCGCGGACA 59.331 47.619 8.83 0.00 0.00 4.02
3334 6112 1.745232 AATTGGATTAGCGCGGACAA 58.255 45.000 8.83 5.11 0.00 3.18
3335 6113 1.967319 ATTGGATTAGCGCGGACAAT 58.033 45.000 8.83 7.36 0.00 2.71
3336 6114 1.295792 TTGGATTAGCGCGGACAATC 58.704 50.000 8.83 9.87 0.00 2.67
3337 6115 0.176910 TGGATTAGCGCGGACAATCA 59.823 50.000 20.62 6.98 31.61 2.57
3338 6116 1.295792 GGATTAGCGCGGACAATCAA 58.704 50.000 20.62 2.70 31.61 2.57
3339 6117 1.261619 GGATTAGCGCGGACAATCAAG 59.738 52.381 20.62 0.00 31.61 3.02
3340 6118 1.933853 GATTAGCGCGGACAATCAAGT 59.066 47.619 8.83 0.00 0.00 3.16
3341 6119 1.803334 TTAGCGCGGACAATCAAGTT 58.197 45.000 8.83 0.00 0.00 2.66
3342 6120 1.075542 TAGCGCGGACAATCAAGTTG 58.924 50.000 8.83 0.00 43.64 3.16
3343 6121 0.602638 AGCGCGGACAATCAAGTTGA 60.603 50.000 8.83 8.27 40.37 3.18
3344 6122 0.179215 GCGCGGACAATCAAGTTGAG 60.179 55.000 8.83 1.09 40.37 3.02
3345 6123 0.443869 CGCGGACAATCAAGTTGAGG 59.556 55.000 11.91 8.56 40.37 3.86
3346 6124 1.808411 GCGGACAATCAAGTTGAGGA 58.192 50.000 11.91 0.00 40.37 3.71
3347 6125 2.359900 GCGGACAATCAAGTTGAGGAT 58.640 47.619 11.91 0.00 40.37 3.24
3348 6126 2.352960 GCGGACAATCAAGTTGAGGATC 59.647 50.000 11.91 7.90 40.37 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.196925 TTGCGTGTGGGCCGATTTT 61.197 52.632 0.00 0.00 0.00 1.82
1 2 2.596046 TTGCGTGTGGGCCGATTT 60.596 55.556 0.00 0.00 0.00 2.17
2 3 3.361977 GTTGCGTGTGGGCCGATT 61.362 61.111 0.00 0.00 0.00 3.34
9 10 1.785041 CTTGAGGTGGTTGCGTGTGG 61.785 60.000 0.00 0.00 0.00 4.17
10 11 1.095228 ACTTGAGGTGGTTGCGTGTG 61.095 55.000 0.00 0.00 0.00 3.82
11 12 0.466543 TACTTGAGGTGGTTGCGTGT 59.533 50.000 0.00 0.00 0.00 4.49
12 13 1.148310 CTACTTGAGGTGGTTGCGTG 58.852 55.000 0.00 0.00 0.00 5.34
13 14 0.756903 ACTACTTGAGGTGGTTGCGT 59.243 50.000 0.00 0.00 36.17 5.24
14 15 1.148310 CACTACTTGAGGTGGTTGCG 58.852 55.000 0.00 0.00 37.54 4.85
15 16 0.875059 GCACTACTTGAGGTGGTTGC 59.125 55.000 0.00 0.00 37.54 4.17
16 17 1.523758 GGCACTACTTGAGGTGGTTG 58.476 55.000 0.00 0.00 37.54 3.77
17 18 0.400594 GGGCACTACTTGAGGTGGTT 59.599 55.000 0.00 0.00 37.54 3.67
18 19 1.489560 GGGGCACTACTTGAGGTGGT 61.490 60.000 0.00 0.00 40.30 4.16
19 20 1.299976 GGGGCACTACTTGAGGTGG 59.700 63.158 0.00 0.00 34.41 4.61
20 21 1.299976 GGGGGCACTACTTGAGGTG 59.700 63.158 0.00 0.00 36.62 4.00
21 22 3.821886 GGGGGCACTACTTGAGGT 58.178 61.111 0.00 0.00 0.00 3.85
63 64 2.568090 GTTGATGGCCAGCAACGG 59.432 61.111 41.47 0.00 45.80 4.44
66 67 1.304381 GAGGGTTGATGGCCAGCAA 60.304 57.895 31.76 31.76 33.94 3.91
67 68 2.356278 GAGGGTTGATGGCCAGCA 59.644 61.111 22.27 22.27 0.00 4.41
68 69 2.825836 CGAGGGTTGATGGCCAGC 60.826 66.667 15.83 15.83 0.00 4.85
69 70 2.825836 GCGAGGGTTGATGGCCAG 60.826 66.667 13.05 0.00 0.00 4.85
70 71 3.626996 CTGCGAGGGTTGATGGCCA 62.627 63.158 8.56 8.56 0.00 5.36
71 72 2.825836 CTGCGAGGGTTGATGGCC 60.826 66.667 0.00 0.00 0.00 5.36
72 73 2.045926 ACTGCGAGGGTTGATGGC 60.046 61.111 0.00 0.00 0.00 4.40
73 74 1.003355 ACACTGCGAGGGTTGATGG 60.003 57.895 0.00 0.00 0.00 3.51
74 75 0.603707 ACACACTGCGAGGGTTGATG 60.604 55.000 0.00 0.00 21.60 3.07
75 76 0.603707 CACACACTGCGAGGGTTGAT 60.604 55.000 0.00 0.00 21.60 2.57
76 77 1.227527 CACACACTGCGAGGGTTGA 60.228 57.895 0.00 0.00 21.60 3.18
77 78 2.896801 GCACACACTGCGAGGGTTG 61.897 63.158 0.00 0.00 35.72 3.77
78 79 2.591715 GCACACACTGCGAGGGTT 60.592 61.111 0.00 0.00 35.72 4.11
97 98 4.182433 GTGGCTAGGCAGAGGGGC 62.182 72.222 20.88 2.61 43.80 5.80
98 99 2.688666 TGTGGCTAGGCAGAGGGG 60.689 66.667 20.88 0.00 0.00 4.79
99 100 1.992277 AGTGTGGCTAGGCAGAGGG 60.992 63.158 20.88 0.00 0.00 4.30
100 101 1.220206 CAGTGTGGCTAGGCAGAGG 59.780 63.158 20.88 9.83 0.00 3.69
101 102 0.390866 CACAGTGTGGCTAGGCAGAG 60.391 60.000 20.88 10.12 0.00 3.35
102 103 1.673477 CACAGTGTGGCTAGGCAGA 59.327 57.895 20.88 16.60 0.00 4.26
103 104 4.291047 CACAGTGTGGCTAGGCAG 57.709 61.111 20.88 10.50 0.00 4.85
112 113 3.907260 ATCGGCCTGCCACAGTGTG 62.907 63.158 16.70 16.70 35.37 3.82
113 114 3.612247 GATCGGCCTGCCACAGTGT 62.612 63.158 9.17 0.00 35.37 3.55
114 115 2.821366 GATCGGCCTGCCACAGTG 60.821 66.667 9.17 0.00 35.37 3.66
115 116 3.005539 AGATCGGCCTGCCACAGT 61.006 61.111 9.17 0.00 35.37 3.55
116 117 2.513204 CAGATCGGCCTGCCACAG 60.513 66.667 9.17 0.00 35.37 3.66
117 118 4.100084 CCAGATCGGCCTGCCACA 62.100 66.667 9.17 0.00 35.37 4.17
118 119 4.864334 CCCAGATCGGCCTGCCAC 62.864 72.222 9.17 0.00 35.37 5.01
126 127 1.077501 ATGTTGTGGCCCAGATCGG 60.078 57.895 0.00 0.00 0.00 4.18
127 128 1.996786 GCATGTTGTGGCCCAGATCG 61.997 60.000 0.00 0.00 0.00 3.69
128 129 0.966875 TGCATGTTGTGGCCCAGATC 60.967 55.000 0.00 0.00 0.00 2.75
129 130 1.077086 TGCATGTTGTGGCCCAGAT 59.923 52.632 0.00 0.00 0.00 2.90
130 131 1.902918 GTGCATGTTGTGGCCCAGA 60.903 57.895 0.00 0.00 0.00 3.86
131 132 1.537814 ATGTGCATGTTGTGGCCCAG 61.538 55.000 0.00 0.00 0.00 4.45
132 133 1.533513 ATGTGCATGTTGTGGCCCA 60.534 52.632 0.00 0.00 0.00 5.36
133 134 1.079681 CATGTGCATGTTGTGGCCC 60.080 57.895 0.00 0.00 34.23 5.80
134 135 1.079681 CCATGTGCATGTTGTGGCC 60.080 57.895 10.76 0.00 37.11 5.36
135 136 1.079681 CCCATGTGCATGTTGTGGC 60.080 57.895 10.76 0.00 37.11 5.01
136 137 0.528924 CTCCCATGTGCATGTTGTGG 59.471 55.000 10.76 5.41 37.11 4.17
137 138 0.528924 CCTCCCATGTGCATGTTGTG 59.471 55.000 10.76 3.68 37.11 3.33
138 139 1.252904 GCCTCCCATGTGCATGTTGT 61.253 55.000 10.76 0.00 37.11 3.32
139 140 1.252215 TGCCTCCCATGTGCATGTTG 61.252 55.000 10.76 2.82 37.11 3.33
140 141 0.542467 TTGCCTCCCATGTGCATGTT 60.542 50.000 10.76 0.00 37.11 2.71
141 142 0.968901 CTTGCCTCCCATGTGCATGT 60.969 55.000 10.76 0.00 37.11 3.21
142 143 1.672854 CCTTGCCTCCCATGTGCATG 61.673 60.000 5.26 5.26 38.51 4.06
143 144 1.380785 CCTTGCCTCCCATGTGCAT 60.381 57.895 0.00 0.00 34.51 3.96
144 145 2.036098 CCTTGCCTCCCATGTGCA 59.964 61.111 0.00 0.00 0.00 4.57
145 146 2.757099 CCCTTGCCTCCCATGTGC 60.757 66.667 0.00 0.00 0.00 4.57
146 147 1.077212 CTCCCTTGCCTCCCATGTG 60.077 63.158 0.00 0.00 0.00 3.21
147 148 2.988839 GCTCCCTTGCCTCCCATGT 61.989 63.158 0.00 0.00 0.00 3.21
148 149 2.123982 GCTCCCTTGCCTCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
156 157 2.117779 GCTGCTAAGGCTCCCTTGC 61.118 63.158 6.77 8.59 44.44 4.01
157 158 1.452833 GGCTGCTAAGGCTCCCTTG 60.453 63.158 6.77 0.00 44.44 3.61
158 159 3.002371 GGCTGCTAAGGCTCCCTT 58.998 61.111 0.00 1.71 46.63 3.95
165 166 1.152881 GTGGATGGGGCTGCTAAGG 60.153 63.158 0.00 0.00 0.00 2.69
166 167 1.152881 GGTGGATGGGGCTGCTAAG 60.153 63.158 0.00 0.00 0.00 2.18
167 168 1.928046 TGGTGGATGGGGCTGCTAA 60.928 57.895 0.00 0.00 0.00 3.09
168 169 2.286045 TGGTGGATGGGGCTGCTA 60.286 61.111 0.00 0.00 0.00 3.49
169 170 4.052518 GTGGTGGATGGGGCTGCT 62.053 66.667 0.00 0.00 0.00 4.24
171 172 4.802051 CGGTGGTGGATGGGGCTG 62.802 72.222 0.00 0.00 0.00 4.85
173 174 3.809013 ATCGGTGGTGGATGGGGC 61.809 66.667 0.00 0.00 0.00 5.80
174 175 2.192979 CATCGGTGGTGGATGGGG 59.807 66.667 0.00 0.00 38.07 4.96
175 176 2.516930 GCATCGGTGGTGGATGGG 60.517 66.667 0.00 0.00 41.22 4.00
176 177 1.378382 TTGCATCGGTGGTGGATGG 60.378 57.895 0.00 0.00 41.22 3.51
177 178 0.959867 TGTTGCATCGGTGGTGGATG 60.960 55.000 0.00 0.00 43.23 3.51
178 179 0.251121 TTGTTGCATCGGTGGTGGAT 60.251 50.000 0.00 0.00 0.00 3.41
179 180 1.149401 TTGTTGCATCGGTGGTGGA 59.851 52.632 0.00 0.00 0.00 4.02
180 181 1.285641 GTTGTTGCATCGGTGGTGG 59.714 57.895 0.00 0.00 0.00 4.61
181 182 0.383590 TTGTTGTTGCATCGGTGGTG 59.616 50.000 0.00 0.00 0.00 4.17
182 183 0.667993 CTTGTTGTTGCATCGGTGGT 59.332 50.000 0.00 0.00 0.00 4.16
183 184 0.664166 GCTTGTTGTTGCATCGGTGG 60.664 55.000 0.00 0.00 0.00 4.61
184 185 0.311790 AGCTTGTTGTTGCATCGGTG 59.688 50.000 0.00 0.00 0.00 4.94
185 186 0.311790 CAGCTTGTTGTTGCATCGGT 59.688 50.000 0.00 0.00 0.00 4.69
186 187 0.592637 TCAGCTTGTTGTTGCATCGG 59.407 50.000 0.00 0.00 0.00 4.18
187 188 2.247637 CATCAGCTTGTTGTTGCATCG 58.752 47.619 0.00 0.00 0.00 3.84
188 189 1.990563 GCATCAGCTTGTTGTTGCATC 59.009 47.619 13.10 0.00 41.29 3.91
189 190 1.341852 TGCATCAGCTTGTTGTTGCAT 59.658 42.857 15.60 0.00 44.46 3.96
190 191 0.745468 TGCATCAGCTTGTTGTTGCA 59.255 45.000 15.60 15.60 46.10 4.08
191 192 2.074547 ATGCATCAGCTTGTTGTTGC 57.925 45.000 11.69 11.69 41.76 4.17
192 193 3.192001 ACCTATGCATCAGCTTGTTGTTG 59.808 43.478 0.19 0.00 42.74 3.33
193 194 3.192001 CACCTATGCATCAGCTTGTTGTT 59.808 43.478 0.19 0.00 42.74 2.83
194 195 2.751259 CACCTATGCATCAGCTTGTTGT 59.249 45.455 0.19 0.00 42.74 3.32
195 196 3.011818 TCACCTATGCATCAGCTTGTTG 58.988 45.455 0.19 0.00 42.74 3.33
196 197 3.276857 CTCACCTATGCATCAGCTTGTT 58.723 45.455 0.19 0.00 42.74 2.83
197 198 2.915349 CTCACCTATGCATCAGCTTGT 58.085 47.619 0.19 0.00 42.74 3.16
198 199 1.602851 GCTCACCTATGCATCAGCTTG 59.397 52.381 0.19 0.00 42.74 4.01
199 200 1.476471 GGCTCACCTATGCATCAGCTT 60.476 52.381 0.19 0.00 42.74 3.74
200 201 0.108207 GGCTCACCTATGCATCAGCT 59.892 55.000 0.19 0.00 42.74 4.24
201 202 0.888285 GGGCTCACCTATGCATCAGC 60.888 60.000 0.19 4.23 37.53 4.26
202 203 0.250640 GGGGCTCACCTATGCATCAG 60.251 60.000 0.19 0.00 40.03 2.90
203 204 0.987613 TGGGGCTCACCTATGCATCA 60.988 55.000 0.19 0.00 40.03 3.07
204 205 0.536006 GTGGGGCTCACCTATGCATC 60.536 60.000 6.12 0.00 40.39 3.91
205 206 1.533711 GTGGGGCTCACCTATGCAT 59.466 57.895 6.12 3.79 40.39 3.96
206 207 2.998097 GTGGGGCTCACCTATGCA 59.002 61.111 6.12 0.00 40.39 3.96
247 248 3.900892 ATACGACGGCAGGGCTCG 61.901 66.667 0.00 11.12 0.00 5.03
248 249 2.279517 CATACGACGGCAGGGCTC 60.280 66.667 0.00 0.00 0.00 4.70
249 250 4.530857 GCATACGACGGCAGGGCT 62.531 66.667 0.00 0.00 0.00 5.19
253 254 4.873129 AGCGGCATACGACGGCAG 62.873 66.667 1.45 0.00 46.79 4.85
254 255 4.444838 AAGCGGCATACGACGGCA 62.445 61.111 1.45 0.00 46.79 5.69
255 256 3.925238 CAAGCGGCATACGACGGC 61.925 66.667 1.45 0.00 46.79 5.68
256 257 1.752501 CTTCAAGCGGCATACGACGG 61.753 60.000 1.45 0.00 46.79 4.79
260 261 1.752501 CGGTCTTCAAGCGGCATACG 61.753 60.000 1.45 0.00 44.98 3.06
261 262 2.006772 CGGTCTTCAAGCGGCATAC 58.993 57.895 1.45 0.00 44.98 2.39
262 263 4.513519 CGGTCTTCAAGCGGCATA 57.486 55.556 1.45 0.00 44.98 3.14
268 269 0.723981 GATGACTGCGGTCTTCAAGC 59.276 55.000 27.95 9.50 42.55 4.01
269 270 0.994995 CGATGACTGCGGTCTTCAAG 59.005 55.000 30.28 17.51 42.90 3.02
270 271 1.014044 GCGATGACTGCGGTCTTCAA 61.014 55.000 30.28 12.89 42.90 2.69
271 272 1.446099 GCGATGACTGCGGTCTTCA 60.446 57.895 30.28 13.77 42.90 3.02
272 273 2.167861 GGCGATGACTGCGGTCTTC 61.168 63.158 25.54 25.11 42.54 2.87
273 274 2.125512 GGCGATGACTGCGGTCTT 60.126 61.111 25.54 19.71 42.54 3.01
274 275 4.498520 CGGCGATGACTGCGGTCT 62.499 66.667 25.54 11.81 42.54 3.85
275 276 3.774959 ATCGGCGATGACTGCGGTC 62.775 63.158 23.36 19.20 42.42 4.79
276 277 3.838271 ATCGGCGATGACTGCGGT 61.838 61.111 23.36 0.00 34.63 5.68
277 278 3.333189 CATCGGCGATGACTGCGG 61.333 66.667 39.06 14.87 42.09 5.69
278 279 3.993234 GCATCGGCGATGACTGCG 61.993 66.667 43.92 23.22 42.09 5.18
279 280 2.879070 CTGCATCGGCGATGACTGC 61.879 63.158 43.92 33.24 42.09 4.40
280 281 1.520120 ACTGCATCGGCGATGACTG 60.520 57.895 43.92 35.50 42.09 3.51
281 282 1.520120 CACTGCATCGGCGATGACT 60.520 57.895 43.92 25.95 42.09 3.41
282 283 3.009140 CACTGCATCGGCGATGAC 58.991 61.111 43.92 34.23 42.09 3.06
283 284 2.891936 GCACTGCATCGGCGATGA 60.892 61.111 43.92 29.43 42.09 2.92
284 285 3.197092 TGCACTGCATCGGCGATG 61.197 61.111 38.01 38.01 45.35 3.84
293 294 2.327343 GGTTCAGCGATGCACTGCA 61.327 57.895 6.09 6.09 44.86 4.41
294 295 2.482374 GGTTCAGCGATGCACTGC 59.518 61.111 3.03 3.87 35.04 4.40
295 296 2.401766 GGGGTTCAGCGATGCACTG 61.402 63.158 3.03 0.00 36.44 3.66
296 297 2.045926 GGGGTTCAGCGATGCACT 60.046 61.111 3.03 0.00 0.00 4.40
297 298 3.134127 GGGGGTTCAGCGATGCAC 61.134 66.667 0.00 0.00 0.00 4.57
411 415 0.625849 TTTCCTTCTCTCCCCATGCC 59.374 55.000 0.00 0.00 0.00 4.40
441 446 3.138798 TCTCCCGCGACCTAGCAC 61.139 66.667 8.23 0.00 36.85 4.40
442 447 3.138798 GTCTCCCGCGACCTAGCA 61.139 66.667 8.23 0.00 36.85 3.49
514 519 1.654023 GGATGTTGCCACCGCTTACC 61.654 60.000 0.00 0.00 35.36 2.85
595 604 7.119709 TGAAAATATTACTCCTCGGTGATGA 57.880 36.000 0.00 0.00 0.00 2.92
597 606 9.877178 GATATGAAAATATTACTCCTCGGTGAT 57.123 33.333 0.00 0.00 0.00 3.06
727 736 0.110295 CCATGGGACCACACTGACAA 59.890 55.000 2.85 0.00 0.00 3.18
730 739 1.426251 AAGCCATGGGACCACACTGA 61.426 55.000 15.13 0.00 0.00 3.41
737 746 0.257039 AGTCATCAAGCCATGGGACC 59.743 55.000 15.13 0.00 35.59 4.46
739 748 2.173356 CCTTAGTCATCAAGCCATGGGA 59.827 50.000 15.13 2.29 0.00 4.37
843 864 8.001881 ACACATGTGGTAAACAATCTAAACAA 57.998 30.769 28.64 0.00 43.61 2.83
864 1318 2.429971 ACATTTTGCACCACATGACACA 59.570 40.909 0.00 0.00 0.00 3.72
867 1321 6.851609 TCTATTACATTTTGCACCACATGAC 58.148 36.000 0.00 0.00 0.00 3.06
869 1323 6.095300 TCCTCTATTACATTTTGCACCACATG 59.905 38.462 0.00 0.00 0.00 3.21
870 1324 6.186957 TCCTCTATTACATTTTGCACCACAT 58.813 36.000 0.00 0.00 0.00 3.21
877 1331 7.535489 AACGTACTCCTCTATTACATTTTGC 57.465 36.000 0.00 0.00 0.00 3.68
883 1337 9.630098 CACTTAAAAACGTACTCCTCTATTACA 57.370 33.333 0.00 0.00 0.00 2.41
884 1338 9.631452 ACACTTAAAAACGTACTCCTCTATTAC 57.369 33.333 0.00 0.00 0.00 1.89
889 1343 8.120140 AGATACACTTAAAAACGTACTCCTCT 57.880 34.615 0.00 0.00 0.00 3.69
890 1344 9.283420 GTAGATACACTTAAAAACGTACTCCTC 57.717 37.037 0.00 0.00 0.00 3.71
891 1345 8.246871 GGTAGATACACTTAAAAACGTACTCCT 58.753 37.037 0.00 0.00 0.00 3.69
892 1346 7.218963 CGGTAGATACACTTAAAAACGTACTCC 59.781 40.741 0.00 0.00 0.00 3.85
894 1348 7.029563 CCGGTAGATACACTTAAAAACGTACT 58.970 38.462 0.00 0.00 0.00 2.73
896 1350 6.806249 CACCGGTAGATACACTTAAAAACGTA 59.194 38.462 6.87 0.00 0.00 3.57
898 1352 5.863397 TCACCGGTAGATACACTTAAAAACG 59.137 40.000 6.87 0.00 0.00 3.60
899 1353 7.656707 TTCACCGGTAGATACACTTAAAAAC 57.343 36.000 6.87 0.00 0.00 2.43
900 1354 8.558700 GTTTTCACCGGTAGATACACTTAAAAA 58.441 33.333 6.87 0.00 0.00 1.94
901 1355 7.714377 TGTTTTCACCGGTAGATACACTTAAAA 59.286 33.333 6.87 0.00 0.00 1.52
902 1356 7.215789 TGTTTTCACCGGTAGATACACTTAAA 58.784 34.615 6.87 0.66 0.00 1.52
903 1357 6.757237 TGTTTTCACCGGTAGATACACTTAA 58.243 36.000 6.87 0.00 0.00 1.85
905 1359 5.217978 TGTTTTCACCGGTAGATACACTT 57.782 39.130 6.87 0.00 0.00 3.16
907 1361 7.118101 TGTTTATGTTTTCACCGGTAGATACAC 59.882 37.037 6.87 4.22 0.00 2.90
910 1364 7.879160 ACTTGTTTATGTTTTCACCGGTAGATA 59.121 33.333 6.87 0.00 0.00 1.98
911 1365 6.713450 ACTTGTTTATGTTTTCACCGGTAGAT 59.287 34.615 6.87 0.00 0.00 1.98
912 1366 6.017770 CACTTGTTTATGTTTTCACCGGTAGA 60.018 38.462 6.87 4.45 0.00 2.59
913 1367 6.140110 CACTTGTTTATGTTTTCACCGGTAG 58.860 40.000 6.87 1.53 0.00 3.18
914 1368 5.589452 ACACTTGTTTATGTTTTCACCGGTA 59.411 36.000 6.87 0.00 0.00 4.02
916 1370 4.927422 ACACTTGTTTATGTTTTCACCGG 58.073 39.130 0.00 0.00 0.00 5.28
917 1371 4.668837 CGACACTTGTTTATGTTTTCACCG 59.331 41.667 0.00 0.00 0.00 4.94
918 1372 5.575019 ACGACACTTGTTTATGTTTTCACC 58.425 37.500 0.00 0.00 0.00 4.02
919 1373 7.097168 GCTTACGACACTTGTTTATGTTTTCAC 60.097 37.037 0.00 0.00 0.00 3.18
922 1376 5.905181 CGCTTACGACACTTGTTTATGTTTT 59.095 36.000 0.00 0.00 43.93 2.43
923 1377 5.437263 CGCTTACGACACTTGTTTATGTTT 58.563 37.500 0.00 0.00 43.93 2.83
924 1378 4.084223 CCGCTTACGACACTTGTTTATGTT 60.084 41.667 0.00 0.00 43.93 2.71
925 1379 3.430895 CCGCTTACGACACTTGTTTATGT 59.569 43.478 0.00 0.00 43.93 2.29
1018 2657 3.804193 CTTCTCCAAAGCCGCCGC 61.804 66.667 0.00 0.00 0.00 6.53
1104 2743 1.153686 GAAGGCGTCGTAGAACCCC 60.154 63.158 0.00 0.00 39.69 4.95
1210 2849 4.179599 GAGGGAGGGAGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
1212 2851 2.613576 GAAGGAGGGAGGGAGGGGAG 62.614 70.000 0.00 0.00 0.00 4.30
1213 2852 2.543637 AAGGAGGGAGGGAGGGGA 60.544 66.667 0.00 0.00 0.00 4.81
1214 2853 2.040359 GAAGGAGGGAGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
1253 2899 2.837291 CGAGGAGCAGGAGAGGGG 60.837 72.222 0.00 0.00 0.00 4.79
1281 2935 2.604046 AGTTGGGCTAGTGCGATAAG 57.396 50.000 0.00 0.00 40.82 1.73
1332 3218 8.194769 TCTGAATGAACGCTAATGATTGTACTA 58.805 33.333 0.00 0.00 0.00 1.82
1338 3224 7.798596 ATTCTCTGAATGAACGCTAATGATT 57.201 32.000 0.00 0.00 0.00 2.57
1340 3226 7.224753 GGTAATTCTCTGAATGAACGCTAATGA 59.775 37.037 0.00 0.00 0.00 2.57
1348 3234 6.675728 GCGGAAAGGTAATTCTCTGAATGAAC 60.676 42.308 0.00 0.00 0.00 3.18
1359 3245 3.946308 GCTACAGCGGAAAGGTAATTC 57.054 47.619 0.00 0.00 0.00 2.17
1372 3272 3.828875 ATTAGGTTCCTCAGCTACAGC 57.171 47.619 0.00 0.00 35.10 4.40
1452 3364 0.607489 GCTGCTCCAAGAAGGCAAGA 60.607 55.000 0.00 0.00 37.29 3.02
1455 3367 0.892358 CAAGCTGCTCCAAGAAGGCA 60.892 55.000 1.00 0.00 37.29 4.75
1456 3368 0.892814 ACAAGCTGCTCCAAGAAGGC 60.893 55.000 1.00 0.00 37.29 4.35
1457 3369 1.613836 AACAAGCTGCTCCAAGAAGG 58.386 50.000 1.00 0.00 39.47 3.46
1458 3370 6.690194 AATATAACAAGCTGCTCCAAGAAG 57.310 37.500 1.00 0.00 0.00 2.85
1459 3371 6.542370 GGTAATATAACAAGCTGCTCCAAGAA 59.458 38.462 1.00 0.00 0.00 2.52
1461 3373 6.058183 AGGTAATATAACAAGCTGCTCCAAG 58.942 40.000 1.00 0.00 0.00 3.61
1462 3374 6.001449 AGGTAATATAACAAGCTGCTCCAA 57.999 37.500 1.00 0.00 0.00 3.53
1482 3394 4.142902 CGAACGCAACTATCATCAAAAGGT 60.143 41.667 0.00 0.00 0.00 3.50
1495 3420 0.027586 GCTCAACAACGAACGCAACT 59.972 50.000 0.00 0.00 0.00 3.16
1500 3425 1.593006 AGTTCTGCTCAACAACGAACG 59.407 47.619 0.00 0.00 39.05 3.95
1600 3533 2.991540 GGTGAGCCCCTGGTTTGC 60.992 66.667 0.00 0.00 0.00 3.68
1639 3578 1.097232 CCGAAAATGCAGCATCCAGA 58.903 50.000 8.77 0.00 0.00 3.86
1674 3613 3.459710 TCCCACCCAATTAAATTCGGT 57.540 42.857 0.00 0.00 33.84 4.69
1700 3646 4.014847 ACTGACGAAACAACAACATGTG 57.985 40.909 0.00 0.00 32.81 3.21
1704 3650 4.361420 TCGATACTGACGAAACAACAACA 58.639 39.130 0.00 0.00 36.84 3.33
1706 3652 5.119588 GGAATCGATACTGACGAAACAACAA 59.880 40.000 0.00 0.00 42.80 2.83
1712 3823 4.328983 GCAAAGGAATCGATACTGACGAAA 59.671 41.667 0.00 0.00 42.80 3.46
1726 3838 3.259123 GTGAACCAATGGAGCAAAGGAAT 59.741 43.478 6.16 0.00 0.00 3.01
1729 3841 1.962807 TGTGAACCAATGGAGCAAAGG 59.037 47.619 6.16 0.00 0.00 3.11
1733 3845 2.040145 TCTCATGTGAACCAATGGAGCA 59.960 45.455 6.16 0.00 0.00 4.26
1877 4108 5.123186 TGTGTGAACTAAAGATTATTGGCCG 59.877 40.000 0.00 0.00 0.00 6.13
1878 4109 6.509418 TGTGTGAACTAAAGATTATTGGCC 57.491 37.500 0.00 0.00 0.00 5.36
1890 4121 6.588204 AGTGGAGTACAATTGTGTGAACTAA 58.412 36.000 21.42 5.81 38.82 2.24
1928 4160 4.245251 TCAGTAGCATCTGTACCTGGTA 57.755 45.455 1.49 1.49 36.85 3.25
1929 4161 3.101643 TCAGTAGCATCTGTACCTGGT 57.898 47.619 4.05 4.05 36.85 4.00
1930 4162 3.195610 TGTTCAGTAGCATCTGTACCTGG 59.804 47.826 12.50 0.00 35.75 4.45
1931 4163 4.177026 GTGTTCAGTAGCATCTGTACCTG 58.823 47.826 12.50 0.00 35.75 4.00
1932 4164 3.195825 GGTGTTCAGTAGCATCTGTACCT 59.804 47.826 12.50 0.00 35.75 3.08
1933 4165 3.056107 TGGTGTTCAGTAGCATCTGTACC 60.056 47.826 12.50 14.59 35.75 3.34
1937 4169 6.539826 TGATTTATGGTGTTCAGTAGCATCTG 59.460 38.462 0.00 2.38 37.44 2.90
1982 4215 2.028130 CCAAAACTGGTAACTGGCACA 58.972 47.619 0.00 0.00 40.36 4.57
1986 4219 3.566742 GGTACACCAAAACTGGTAACTGG 59.433 47.826 0.00 0.00 40.85 4.00
2007 4240 9.458374 AAAATTTACAAACTACACGAATCTTGG 57.542 29.630 0.00 0.00 0.00 3.61
2117 4359 1.003464 TCCAACAGCTCAGCTAATGCA 59.997 47.619 0.00 0.00 42.74 3.96
2125 4367 2.286294 GCACGATATTCCAACAGCTCAG 59.714 50.000 0.00 0.00 0.00 3.35
2175 4417 8.165239 TGGCAACATATGATTTCATAGTTACC 57.835 34.615 10.38 15.99 46.17 2.85
2361 4606 6.314784 CAATTACAGGCTTACAGCTTACAAC 58.685 40.000 0.00 0.00 41.99 3.32
2478 4741 8.243426 TCTGTAATTAAACATGCAAAGGTCATC 58.757 33.333 0.00 0.00 0.00 2.92
2579 4842 3.409026 AGCCTTTGGTAGTCAGACTTG 57.591 47.619 8.80 0.00 0.00 3.16
2600 4863 6.049955 TGATCCTCGGAAGTATTTGTCTTT 57.950 37.500 0.00 0.00 0.00 2.52
2609 4872 2.160721 AGCCTTGATCCTCGGAAGTA 57.839 50.000 0.00 0.00 0.00 2.24
2614 4877 1.613925 TCGATTAGCCTTGATCCTCGG 59.386 52.381 0.00 0.00 0.00 4.63
2689 4956 2.664402 AACTCACACCTGGCTCAAAT 57.336 45.000 0.00 0.00 0.00 2.32
2826 5093 4.704540 TGAAGAACAAAAGGCTTCTGTTGA 59.295 37.500 22.71 2.36 37.82 3.18
2851 5118 5.464389 TCGTTGTCATCATGAGCATCTATTG 59.536 40.000 0.09 0.00 34.92 1.90
2919 5693 3.959535 TGCTTTGCAGGATTAAAAGGG 57.040 42.857 0.00 0.00 33.32 3.95
3056 5834 3.845178 TCTGCATAACTGTTGGTACTCG 58.155 45.455 2.69 0.00 0.00 4.18
3219 5997 2.596346 ACCCTTGCATCATCACAAACA 58.404 42.857 0.00 0.00 0.00 2.83
3221 5999 2.228582 CGAACCCTTGCATCATCACAAA 59.771 45.455 0.00 0.00 0.00 2.83
3237 6015 5.052481 ACTGGTTAGAAACAGTTACGAACC 58.948 41.667 7.15 12.99 45.03 3.62
3263 6041 6.149308 GTGTGATGATCTTGATGTAACCAACA 59.851 38.462 0.00 0.00 43.86 3.33
3264 6042 6.149308 TGTGTGATGATCTTGATGTAACCAAC 59.851 38.462 0.00 0.00 0.00 3.77
3265 6043 6.237154 TGTGTGATGATCTTGATGTAACCAA 58.763 36.000 0.00 0.00 0.00 3.67
3266 6044 5.803552 TGTGTGATGATCTTGATGTAACCA 58.196 37.500 0.00 0.00 0.00 3.67
3267 6045 5.295292 CCTGTGTGATGATCTTGATGTAACC 59.705 44.000 0.00 0.00 0.00 2.85
3268 6046 5.220739 GCCTGTGTGATGATCTTGATGTAAC 60.221 44.000 0.00 0.00 0.00 2.50
3269 6047 4.877823 GCCTGTGTGATGATCTTGATGTAA 59.122 41.667 0.00 0.00 0.00 2.41
3270 6048 4.080975 TGCCTGTGTGATGATCTTGATGTA 60.081 41.667 0.00 0.00 0.00 2.29
3271 6049 3.276857 GCCTGTGTGATGATCTTGATGT 58.723 45.455 0.00 0.00 0.00 3.06
3272 6050 3.275999 TGCCTGTGTGATGATCTTGATG 58.724 45.455 0.00 0.00 0.00 3.07
3273 6051 3.639672 TGCCTGTGTGATGATCTTGAT 57.360 42.857 0.00 0.00 0.00 2.57
3274 6052 3.076621 GTTGCCTGTGTGATGATCTTGA 58.923 45.455 0.00 0.00 0.00 3.02
3275 6053 2.815503 TGTTGCCTGTGTGATGATCTTG 59.184 45.455 0.00 0.00 0.00 3.02
3276 6054 2.816087 GTGTTGCCTGTGTGATGATCTT 59.184 45.455 0.00 0.00 0.00 2.40
3277 6055 2.224597 TGTGTTGCCTGTGTGATGATCT 60.225 45.455 0.00 0.00 0.00 2.75
3278 6056 2.153645 TGTGTTGCCTGTGTGATGATC 58.846 47.619 0.00 0.00 0.00 2.92
3279 6057 2.156917 CTGTGTTGCCTGTGTGATGAT 58.843 47.619 0.00 0.00 0.00 2.45
3280 6058 1.134128 ACTGTGTTGCCTGTGTGATGA 60.134 47.619 0.00 0.00 0.00 2.92
3281 6059 1.311859 ACTGTGTTGCCTGTGTGATG 58.688 50.000 0.00 0.00 0.00 3.07
3282 6060 2.878406 GTTACTGTGTTGCCTGTGTGAT 59.122 45.455 0.00 0.00 0.00 3.06
3283 6061 2.285083 GTTACTGTGTTGCCTGTGTGA 58.715 47.619 0.00 0.00 0.00 3.58
3284 6062 1.333619 GGTTACTGTGTTGCCTGTGTG 59.666 52.381 0.00 0.00 0.00 3.82
3285 6063 1.065053 TGGTTACTGTGTTGCCTGTGT 60.065 47.619 0.00 0.00 0.00 3.72
3286 6064 1.674359 TGGTTACTGTGTTGCCTGTG 58.326 50.000 0.00 0.00 0.00 3.66
3287 6065 2.428544 TTGGTTACTGTGTTGCCTGT 57.571 45.000 0.00 0.00 0.00 4.00
3288 6066 3.317711 TGATTTGGTTACTGTGTTGCCTG 59.682 43.478 0.00 0.00 0.00 4.85
3289 6067 3.561143 TGATTTGGTTACTGTGTTGCCT 58.439 40.909 0.00 0.00 0.00 4.75
3290 6068 4.236935 CATGATTTGGTTACTGTGTTGCC 58.763 43.478 0.00 0.00 0.00 4.52
3291 6069 4.022416 TCCATGATTTGGTTACTGTGTTGC 60.022 41.667 0.00 0.00 46.52 4.17
3292 6070 5.703978 TCCATGATTTGGTTACTGTGTTG 57.296 39.130 0.00 0.00 46.52 3.33
3293 6071 6.723298 TTTCCATGATTTGGTTACTGTGTT 57.277 33.333 0.00 0.00 46.52 3.32
3294 6072 6.916360 ATTTCCATGATTTGGTTACTGTGT 57.084 33.333 0.00 0.00 46.52 3.72
3295 6073 6.591062 CCAATTTCCATGATTTGGTTACTGTG 59.409 38.462 0.00 0.00 46.52 3.66
3296 6074 6.496565 TCCAATTTCCATGATTTGGTTACTGT 59.503 34.615 0.00 0.00 46.52 3.55
3297 6075 6.934056 TCCAATTTCCATGATTTGGTTACTG 58.066 36.000 0.00 0.00 46.52 2.74
3298 6076 7.738437 ATCCAATTTCCATGATTTGGTTACT 57.262 32.000 0.00 0.00 46.52 2.24
3299 6077 9.533253 CTAATCCAATTTCCATGATTTGGTTAC 57.467 33.333 0.00 0.00 46.52 2.50
3300 6078 8.203485 GCTAATCCAATTTCCATGATTTGGTTA 58.797 33.333 0.00 3.57 46.52 2.85
3301 6079 7.049754 GCTAATCCAATTTCCATGATTTGGTT 58.950 34.615 0.00 2.72 46.52 3.67
3302 6080 6.585416 GCTAATCCAATTTCCATGATTTGGT 58.415 36.000 0.00 0.00 46.52 3.67
3304 6082 5.176223 GCGCTAATCCAATTTCCATGATTTG 59.824 40.000 0.00 0.00 0.00 2.32
3305 6083 5.291971 GCGCTAATCCAATTTCCATGATTT 58.708 37.500 0.00 0.00 0.00 2.17
3306 6084 4.557296 CGCGCTAATCCAATTTCCATGATT 60.557 41.667 5.56 0.00 0.00 2.57
3307 6085 3.058016 CGCGCTAATCCAATTTCCATGAT 60.058 43.478 5.56 0.00 0.00 2.45
3308 6086 2.290367 CGCGCTAATCCAATTTCCATGA 59.710 45.455 5.56 0.00 0.00 3.07
3309 6087 2.605338 CCGCGCTAATCCAATTTCCATG 60.605 50.000 5.56 0.00 0.00 3.66
3310 6088 1.608590 CCGCGCTAATCCAATTTCCAT 59.391 47.619 5.56 0.00 0.00 3.41
3311 6089 1.021202 CCGCGCTAATCCAATTTCCA 58.979 50.000 5.56 0.00 0.00 3.53
3312 6090 1.002792 GTCCGCGCTAATCCAATTTCC 60.003 52.381 5.56 0.00 0.00 3.13
3313 6091 1.668751 TGTCCGCGCTAATCCAATTTC 59.331 47.619 5.56 0.00 0.00 2.17
3314 6092 1.745232 TGTCCGCGCTAATCCAATTT 58.255 45.000 5.56 0.00 0.00 1.82
3315 6093 1.745232 TTGTCCGCGCTAATCCAATT 58.255 45.000 5.56 0.00 0.00 2.32
3316 6094 1.873591 GATTGTCCGCGCTAATCCAAT 59.126 47.619 5.56 6.59 0.00 3.16
3317 6095 1.295792 GATTGTCCGCGCTAATCCAA 58.704 50.000 5.56 1.44 0.00 3.53
3318 6096 0.176910 TGATTGTCCGCGCTAATCCA 59.823 50.000 18.82 9.35 31.47 3.41
3319 6097 1.261619 CTTGATTGTCCGCGCTAATCC 59.738 52.381 18.82 7.63 31.47 3.01
3320 6098 1.933853 ACTTGATTGTCCGCGCTAATC 59.066 47.619 5.56 16.35 0.00 1.75
3321 6099 2.024176 ACTTGATTGTCCGCGCTAAT 57.976 45.000 5.56 0.00 0.00 1.73
3322 6100 1.463056 CAACTTGATTGTCCGCGCTAA 59.537 47.619 5.56 0.00 33.20 3.09
3323 6101 1.075542 CAACTTGATTGTCCGCGCTA 58.924 50.000 5.56 0.00 33.20 4.26
3324 6102 0.602638 TCAACTTGATTGTCCGCGCT 60.603 50.000 5.56 0.00 39.54 5.92
3325 6103 0.179215 CTCAACTTGATTGTCCGCGC 60.179 55.000 0.00 0.00 39.54 6.86
3326 6104 0.443869 CCTCAACTTGATTGTCCGCG 59.556 55.000 0.00 0.00 39.54 6.46
3327 6105 1.808411 TCCTCAACTTGATTGTCCGC 58.192 50.000 0.00 0.00 39.54 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.