Multiple sequence alignment - TraesCS5D01G037000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G037000 chr5D 100.000 3596 0 0 1 3596 35999526 36003121 0.000000e+00 6641.0
1 TraesCS5D01G037000 chr5D 75.250 400 58 23 2618 3015 35985540 35985900 6.220000e-33 152.0
2 TraesCS5D01G037000 chr5A 96.094 3021 111 4 2 3021 25090738 25093752 0.000000e+00 4918.0
3 TraesCS5D01G037000 chr5A 95.918 343 12 2 3256 3596 25093981 25094323 4.060000e-154 555.0
4 TraesCS5D01G037000 chr5A 78.744 207 28 10 2889 3084 24795985 24796186 1.360000e-24 124.0
5 TraesCS5D01G037000 chr5A 83.178 107 16 2 2889 2993 25024530 25024424 2.960000e-16 97.1
6 TraesCS5D01G037000 chr1B 93.197 2499 137 15 457 2945 597156588 597154113 0.000000e+00 3642.0
7 TraesCS5D01G037000 chr1B 84.712 399 53 6 3205 3595 597154113 597153715 3.370000e-105 392.0
8 TraesCS5D01G037000 chr7D 77.136 1299 275 18 995 2282 58826894 58825607 0.000000e+00 734.0
9 TraesCS5D01G037000 chr7D 76.575 1302 270 29 995 2277 58855111 58856396 0.000000e+00 682.0
10 TraesCS5D01G037000 chr7D 76.282 1307 285 22 990 2282 58858599 58859894 0.000000e+00 673.0
11 TraesCS5D01G037000 chr7A 76.358 1307 274 30 995 2282 63388257 63389547 0.000000e+00 669.0
12 TraesCS5D01G037000 chr7A 75.844 1304 286 25 993 2280 63362975 63361685 1.410000e-178 636.0
13 TraesCS5D01G037000 chr7A 78.559 583 118 6 990 1567 63391699 63392279 9.420000e-101 377.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G037000 chr5D 35999526 36003121 3595 False 6641.0 6641 100.0000 1 3596 1 chr5D.!!$F2 3595
1 TraesCS5D01G037000 chr5A 25090738 25094323 3585 False 2736.5 4918 96.0060 2 3596 2 chr5A.!!$F2 3594
2 TraesCS5D01G037000 chr1B 597153715 597156588 2873 True 2017.0 3642 88.9545 457 3595 2 chr1B.!!$R1 3138
3 TraesCS5D01G037000 chr7D 58825607 58826894 1287 True 734.0 734 77.1360 995 2282 1 chr7D.!!$R1 1287
4 TraesCS5D01G037000 chr7D 58855111 58859894 4783 False 677.5 682 76.4285 990 2282 2 chr7D.!!$F1 1292
5 TraesCS5D01G037000 chr7A 63361685 63362975 1290 True 636.0 636 75.8440 993 2280 1 chr7A.!!$R1 1287
6 TraesCS5D01G037000 chr7A 63388257 63392279 4022 False 523.0 669 77.4585 990 2282 2 chr7A.!!$F1 1292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 362 0.040204 CAGGGCCCTGAATCAACCTT 59.960 55.0 44.19 5.82 46.30 3.50 F
713 715 0.168788 AACAAGTCGCGCATCATTGG 59.831 50.0 8.75 0.00 0.00 3.16 F
1375 1380 0.443869 CACCGTGAAGTGCATACTGC 59.556 55.0 0.00 0.00 45.29 4.40 F
2423 2440 0.689055 AGCTGGAGTGCAGATGTTCA 59.311 50.0 16.83 0.00 34.99 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1610 0.390735 CAATTGGGAGCAAAGGCAGC 60.391 55.000 0.00 0.00 44.61 5.25 R
2484 2522 0.527565 GCCCACTTACAGTGCAATGG 59.472 55.000 19.57 3.09 44.63 3.16 R
2515 2553 0.961019 TTGAAATGTGTGGCTCCTGC 59.039 50.000 0.00 0.00 38.76 4.85 R
3349 5269 1.133823 AGATGTTTGGCCGGCATATCA 60.134 47.619 30.85 21.00 0.00 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.709613 GCATCTCAAAGATTTCCTGCAAATATT 59.290 33.333 0.00 0.00 37.48 1.28
60 61 0.749649 AGCAATGCCACAAACCGAAA 59.250 45.000 0.00 0.00 0.00 3.46
147 148 7.292591 TGCCTCTTAGCTAAATTATCCCTAGTT 59.707 37.037 7.74 0.00 0.00 2.24
171 172 9.931210 GTTAGCAGTTTATAATGTGATGGTAAC 57.069 33.333 14.83 14.83 40.60 2.50
179 180 9.521841 TTTATAATGTGATGGTAACCACAAGAA 57.478 29.630 0.00 0.00 45.08 2.52
185 186 6.374053 TGTGATGGTAACCACAAGAACATATG 59.626 38.462 0.00 0.00 39.97 1.78
227 228 4.640771 TCTTCCAAGCAGTAGGAACAAT 57.359 40.909 0.00 0.00 38.91 2.71
240 241 7.224949 GCAGTAGGAACAATAACTGGAGTAATC 59.775 40.741 3.75 0.00 39.75 1.75
241 242 7.711339 CAGTAGGAACAATAACTGGAGTAATCC 59.289 40.741 1.18 1.18 36.53 3.01
277 278 8.482429 CAGATGTGCTTTAACAAAACTGAATTC 58.518 33.333 0.00 0.00 34.63 2.17
278 279 6.804534 TGTGCTTTAACAAAACTGAATTCG 57.195 33.333 0.04 0.00 0.00 3.34
323 324 4.080919 AGCTATACACTCCTGAATTGTGCA 60.081 41.667 0.00 0.00 35.33 4.57
332 333 2.159476 CCTGAATTGTGCATCTTCCACG 60.159 50.000 0.00 0.00 36.01 4.94
334 335 1.470098 GAATTGTGCATCTTCCACGCT 59.530 47.619 0.00 0.00 36.01 5.07
346 348 3.423154 CACGCTTTCGGTCAGGGC 61.423 66.667 0.00 0.00 40.69 5.19
358 360 4.344237 CAGGGCCCTGAATCAACC 57.656 61.111 44.19 2.48 46.30 3.77
360 362 0.040204 CAGGGCCCTGAATCAACCTT 59.960 55.000 44.19 5.82 46.30 3.50
362 364 1.566231 AGGGCCCTGAATCAACCTTAG 59.434 52.381 28.05 0.00 0.00 2.18
480 482 6.808008 AATTCGGAGATATTATGGCACAAG 57.192 37.500 0.00 0.00 38.47 3.16
502 504 3.009723 TGAATTACACCAGCAGCTAAGC 58.990 45.455 0.00 0.00 0.00 3.09
563 565 3.057526 TCGTCACACAAGTCAGATACCAG 60.058 47.826 0.00 0.00 0.00 4.00
673 675 7.976175 AGACCAACTGAAAAGAAAAGACAATTC 59.024 33.333 0.00 0.00 0.00 2.17
713 715 0.168788 AACAAGTCGCGCATCATTGG 59.831 50.000 8.75 0.00 0.00 3.16
889 891 5.811613 CCTTGACTTTTTGAGCAATCAAACA 59.188 36.000 3.03 0.00 39.06 2.83
957 959 5.300752 CACTACATGACCCATCCATAGAAC 58.699 45.833 0.00 0.00 0.00 3.01
1184 1186 2.224018 GGCACATCACAAACCATGTTGT 60.224 45.455 0.00 0.00 41.46 3.32
1239 1241 0.537188 ACCAGGGTCGTTATCTGCTG 59.463 55.000 0.00 0.00 0.00 4.41
1375 1380 0.443869 CACCGTGAAGTGCATACTGC 59.556 55.000 0.00 0.00 45.29 4.40
1563 1571 6.409704 TGTCGAGAAAGAAAGGATCATCAAT 58.590 36.000 0.00 0.00 0.00 2.57
1579 1587 3.896648 TCAATTTCTTGCTTGACGACC 57.103 42.857 0.00 0.00 32.11 4.79
1580 1588 3.210227 TCAATTTCTTGCTTGACGACCA 58.790 40.909 0.00 0.00 32.11 4.02
1602 1610 1.097547 GTCCATGCATCACGGGGAAG 61.098 60.000 4.37 0.00 0.00 3.46
1681 1689 1.153289 GTCTGCGATGATGCCAGGT 60.153 57.895 0.00 0.00 0.00 4.00
2199 2216 6.552445 AATCTACAGCTCTGGTGTAAGATT 57.448 37.500 17.79 17.79 44.15 2.40
2214 2231 7.712639 TGGTGTAAGATTCTGAGAAGCAATATC 59.287 37.037 13.36 0.00 0.00 1.63
2389 2406 1.756950 CCAAGCCCTGATGCAGCAT 60.757 57.895 7.91 7.91 0.00 3.79
2423 2440 0.689055 AGCTGGAGTGCAGATGTTCA 59.311 50.000 16.83 0.00 34.99 3.18
2484 2522 0.887387 TTTGCCTGGACTACAACGCC 60.887 55.000 0.00 0.00 0.00 5.68
2515 2553 1.308998 AAGTGGGCGAAACAGTTCAG 58.691 50.000 0.00 0.00 32.89 3.02
2521 2559 0.514691 GCGAAACAGTTCAGCAGGAG 59.485 55.000 7.77 0.00 35.06 3.69
2602 2640 1.516161 TTCTGTGTGCTGATCAGTGC 58.484 50.000 23.38 16.20 0.00 4.40
2679 2724 4.097286 TCCAGTTTTGTGCTGTTTTCTACC 59.903 41.667 0.00 0.00 32.41 3.18
2712 2760 2.695147 TCAGCATCGCATCCTCTTAGAA 59.305 45.455 0.00 0.00 0.00 2.10
2853 3500 8.084684 AGATTGAAGTATGACTTTCTTTTTGCC 58.915 33.333 0.00 0.00 38.80 4.52
2863 3510 5.729510 ACTTTCTTTTTGCCACTGCTTTTA 58.270 33.333 0.00 0.00 38.71 1.52
2887 3534 3.699538 CTGTACCTGTATCACTACTGCCA 59.300 47.826 0.00 0.00 0.00 4.92
2924 3571 6.239176 GGCAGCTACAGATACTACTTCTCAAT 60.239 42.308 0.00 0.00 0.00 2.57
2940 3587 0.868602 CAATGCTATGCGCCAACTGC 60.869 55.000 4.18 2.76 38.05 4.40
2950 3597 1.527370 GCCAACTGCTACCTAGGGG 59.473 63.158 14.81 6.69 36.87 4.79
2987 3634 1.202114 TCCAATGATCTTTGCGCCAAC 59.798 47.619 14.34 0.00 0.00 3.77
3001 3648 0.958822 GCCAACGAATGACCCTTTGT 59.041 50.000 0.00 0.00 0.00 2.83
3078 4302 0.031178 AAGTGCAAGCGCTTTGGAAG 59.969 50.000 22.51 10.21 43.30 3.46
3083 4307 1.535462 GCAAGCGCTTTGGAAGTAGAA 59.465 47.619 22.51 0.00 37.26 2.10
3084 4308 2.665794 GCAAGCGCTTTGGAAGTAGAAC 60.666 50.000 22.51 0.00 37.26 3.01
3085 4309 2.543777 AGCGCTTTGGAAGTAGAACA 57.456 45.000 2.64 0.00 0.00 3.18
3086 4310 2.846193 AGCGCTTTGGAAGTAGAACAA 58.154 42.857 2.64 0.00 0.00 2.83
3123 4347 5.586643 GGTAAGATCCTCAACTTGATTGTCC 59.413 44.000 0.00 0.00 39.54 4.02
3126 4350 0.443869 CCTCAACTTGATTGTCCGCG 59.556 55.000 0.00 0.00 39.54 6.46
3164 4966 3.317711 TGATTTGGTTACTGTGTTGCCTG 59.682 43.478 0.00 0.00 0.00 4.85
3165 4967 2.428544 TTGGTTACTGTGTTGCCTGT 57.571 45.000 0.00 0.00 0.00 4.00
3169 4971 2.285083 GTTACTGTGTTGCCTGTGTGA 58.715 47.619 0.00 0.00 0.00 3.58
3172 4974 1.134128 ACTGTGTTGCCTGTGTGATGA 60.134 47.619 0.00 0.00 0.00 2.92
3174 4976 2.153645 TGTGTTGCCTGTGTGATGATC 58.846 47.619 0.00 0.00 0.00 2.92
3177 4979 2.815503 TGTTGCCTGTGTGATGATCTTG 59.184 45.455 0.00 0.00 0.00 3.02
3178 4980 3.076621 GTTGCCTGTGTGATGATCTTGA 58.923 45.455 0.00 0.00 0.00 3.02
3181 4983 3.276857 GCCTGTGTGATGATCTTGATGT 58.723 45.455 0.00 0.00 0.00 3.06
3182 4984 4.080975 TGCCTGTGTGATGATCTTGATGTA 60.081 41.667 0.00 0.00 0.00 2.29
3183 4985 4.877823 GCCTGTGTGATGATCTTGATGTAA 59.122 41.667 0.00 0.00 0.00 2.41
3185 4987 5.295292 CCTGTGTGATGATCTTGATGTAACC 59.705 44.000 0.00 0.00 0.00 2.85
3187 4989 6.237154 TGTGTGATGATCTTGATGTAACCAA 58.763 36.000 0.00 0.00 0.00 3.67
3188 4990 6.149308 TGTGTGATGATCTTGATGTAACCAAC 59.851 38.462 0.00 0.00 0.00 3.77
3189 4991 6.149308 GTGTGATGATCTTGATGTAACCAACA 59.851 38.462 0.00 0.00 43.86 3.33
3231 5151 2.228582 CGAACCCTTGCATCATCACAAA 59.771 45.455 0.00 0.00 0.00 2.83
3233 5153 2.596346 ACCCTTGCATCATCACAAACA 58.404 42.857 0.00 0.00 0.00 2.83
3533 5485 3.959535 TGCTTTGCAGGATTAAAAGGG 57.040 42.857 0.00 0.00 33.32 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.845758 AATCTTTGAGATGCTTGGATTCAA 57.154 33.333 0.00 0.00 34.65 2.69
60 61 3.885297 CTGAATCCTGTCACCACTTGTTT 59.115 43.478 0.00 0.00 0.00 2.83
147 148 8.268605 TGGTTACCATCACATTATAAACTGCTA 58.731 33.333 0.00 0.00 0.00 3.49
171 172 4.199310 CTGGGGTACATATGTTCTTGTGG 58.801 47.826 14.77 0.00 0.00 4.17
198 199 4.946157 CCTACTGCTTGGAAGATTCATGTT 59.054 41.667 0.00 0.00 0.00 2.71
293 294 5.632034 TCAGGAGTGTATAGCTCTCAGTA 57.368 43.478 0.00 0.00 38.95 2.74
311 312 2.159476 CGTGGAAGATGCACAATTCAGG 60.159 50.000 8.98 0.00 38.73 3.86
323 324 0.320374 TGACCGAAAGCGTGGAAGAT 59.680 50.000 0.00 0.00 35.23 2.40
332 333 4.035102 AGGGCCCTGACCGAAAGC 62.035 66.667 28.05 0.00 34.63 3.51
334 335 2.528127 TCAGGGCCCTGACCGAAA 60.528 61.111 44.71 26.02 46.80 3.46
346 348 5.693769 TCTAACCTAAGGTTGATTCAGGG 57.306 43.478 0.00 0.00 46.35 4.45
358 360 7.174946 TCTCCTGCAAATTGTTTCTAACCTAAG 59.825 37.037 0.00 0.00 0.00 2.18
360 362 6.539173 TCTCCTGCAAATTGTTTCTAACCTA 58.461 36.000 0.00 0.00 0.00 3.08
362 364 5.705609 TCTCCTGCAAATTGTTTCTAACC 57.294 39.130 0.00 0.00 0.00 2.85
480 482 3.181506 GCTTAGCTGCTGGTGTAATTCAC 60.182 47.826 13.43 0.00 45.47 3.18
502 504 4.302455 CCAGTCTGTAGAAGTGTGTCTTG 58.698 47.826 0.00 0.00 36.40 3.02
563 565 3.548770 TGAGATGGCCATCATTTCTGAC 58.451 45.455 40.05 22.09 40.22 3.51
673 675 3.211865 TGGCGGTAGATACTACAGACAG 58.788 50.000 12.09 0.60 0.00 3.51
713 715 4.984785 GGTGCTTTCTGAAGGAATGAAAAC 59.015 41.667 3.45 0.00 34.84 2.43
889 891 4.402474 TGACAATATCGTCTCACCTGTGAT 59.598 41.667 0.00 0.00 39.13 3.06
924 926 2.086869 GTCATGTAGTGGTGCTTGCAT 58.913 47.619 0.00 0.00 0.00 3.96
957 959 6.094603 CAGATCTTGGAATGTTTCAGGGTAAG 59.905 42.308 0.00 0.00 0.00 2.34
1184 1186 1.076995 TCCGAGAGCCATTCGAGGA 60.077 57.895 3.95 0.00 40.36 3.71
1239 1241 2.509336 CCGCACCTGATCGTGTCC 60.509 66.667 3.18 0.00 36.08 4.02
1563 1571 0.934496 CGTGGTCGTCAAGCAAGAAA 59.066 50.000 0.00 0.00 37.06 2.52
1579 1587 2.463620 CCGTGATGCATGGACCGTG 61.464 63.158 2.46 9.54 42.73 4.94
1580 1588 2.125147 CCGTGATGCATGGACCGT 60.125 61.111 2.46 0.00 42.73 4.83
1602 1610 0.390735 CAATTGGGAGCAAAGGCAGC 60.391 55.000 0.00 0.00 44.61 5.25
2113 2130 5.528690 CGAAGAATGATCCATTTAGCTTCCA 59.471 40.000 0.00 0.00 33.90 3.53
2199 2216 1.694150 CCCCCGATATTGCTTCTCAGA 59.306 52.381 0.00 0.00 0.00 3.27
2214 2231 1.460273 CCAACAAGGACAAACCCCCG 61.460 60.000 0.00 0.00 41.22 5.73
2355 2372 2.621998 GCTTGGCAGAAGCATATCATGT 59.378 45.455 13.35 0.00 44.61 3.21
2423 2440 4.214971 TGCACAACAACACTTTTGCATTTT 59.785 33.333 0.00 0.00 35.13 1.82
2484 2522 0.527565 GCCCACTTACAGTGCAATGG 59.472 55.000 19.57 3.09 44.63 3.16
2515 2553 0.961019 TTGAAATGTGTGGCTCCTGC 59.039 50.000 0.00 0.00 38.76 4.85
2521 2559 2.419021 CCCCATGATTGAAATGTGTGGC 60.419 50.000 0.00 0.00 0.00 5.01
2679 2724 2.789092 GCGATGCTGAAATGAAAGGACG 60.789 50.000 0.00 0.00 0.00 4.79
2853 3500 3.740115 ACAGGTACAGGTAAAAGCAGTG 58.260 45.455 0.00 0.00 0.00 3.66
2863 3510 3.700038 GCAGTAGTGATACAGGTACAGGT 59.300 47.826 0.42 0.00 0.00 4.00
2950 3597 6.286758 TCATTGGATCATTTCTGAGAGCTAC 58.713 40.000 0.00 0.00 34.12 3.58
2987 3634 5.880054 AAGTGATTACAAAGGGTCATTCG 57.120 39.130 0.00 0.00 0.00 3.34
3001 3648 8.639761 GGCTAGAAGTAGATGGTAAAGTGATTA 58.360 37.037 0.00 0.00 0.00 1.75
3035 4259 5.970592 GCAGAGGCAGATTTTTAGGAAAAT 58.029 37.500 0.00 0.00 42.54 1.82
3078 4302 2.281762 CGCTGCGGAGTATTTGTTCTAC 59.718 50.000 15.40 0.00 0.00 2.59
3106 4330 1.808411 GCGGACAATCAAGTTGAGGA 58.192 50.000 11.91 0.00 40.37 3.71
3123 4347 2.290367 TCATGGAAATTGGATTAGCGCG 59.710 45.455 0.00 0.00 0.00 6.86
3164 4966 6.149308 TGTTGGTTACATCAAGATCATCACAC 59.851 38.462 0.00 0.00 0.00 3.82
3165 4967 6.237154 TGTTGGTTACATCAAGATCATCACA 58.763 36.000 0.00 0.00 0.00 3.58
3169 4971 7.066645 CAGTCATGTTGGTTACATCAAGATCAT 59.933 37.037 0.00 0.00 45.71 2.45
3172 4974 5.649395 CCAGTCATGTTGGTTACATCAAGAT 59.351 40.000 9.86 0.00 45.71 2.40
3174 4976 4.761739 ACCAGTCATGTTGGTTACATCAAG 59.238 41.667 15.81 0.00 46.57 3.02
3185 4987 6.377327 AACTGTTTCTAACCAGTCATGTTG 57.623 37.500 0.00 0.00 0.00 3.33
3187 4989 5.694910 CGTAACTGTTTCTAACCAGTCATGT 59.305 40.000 0.00 0.00 0.00 3.21
3188 4990 5.924254 TCGTAACTGTTTCTAACCAGTCATG 59.076 40.000 0.00 0.00 0.00 3.07
3189 4991 6.092955 TCGTAACTGTTTCTAACCAGTCAT 57.907 37.500 0.00 0.00 0.00 3.06
3190 4992 5.518848 TCGTAACTGTTTCTAACCAGTCA 57.481 39.130 0.00 0.00 0.00 3.41
3191 4993 5.176406 GGTTCGTAACTGTTTCTAACCAGTC 59.824 44.000 20.90 2.53 35.93 3.51
3192 4994 5.052481 GGTTCGTAACTGTTTCTAACCAGT 58.948 41.667 20.90 0.00 35.93 4.00
3193 4995 4.450080 GGGTTCGTAACTGTTTCTAACCAG 59.550 45.833 24.49 0.00 37.27 4.00
3194 4996 4.101430 AGGGTTCGTAACTGTTTCTAACCA 59.899 41.667 24.49 0.00 37.27 3.67
3196 4998 5.559608 GCAAGGGTTCGTAACTGTTTCTAAC 60.560 44.000 0.00 2.30 0.00 2.34
3197 4999 4.512571 GCAAGGGTTCGTAACTGTTTCTAA 59.487 41.667 0.00 0.00 0.00 2.10
3198 5000 4.060205 GCAAGGGTTCGTAACTGTTTCTA 58.940 43.478 0.00 0.00 0.00 2.10
3199 5001 2.876550 GCAAGGGTTCGTAACTGTTTCT 59.123 45.455 0.00 0.00 0.00 2.52
3200 5002 2.614983 TGCAAGGGTTCGTAACTGTTTC 59.385 45.455 0.00 0.00 0.00 2.78
3201 5003 2.645802 TGCAAGGGTTCGTAACTGTTT 58.354 42.857 0.00 0.00 0.00 2.83
3203 5005 2.224426 TGATGCAAGGGTTCGTAACTGT 60.224 45.455 0.00 0.00 0.00 3.55
3231 5151 2.050350 GCACCCTCATGCAGCATGT 61.050 57.895 30.38 12.31 45.39 3.21
3348 5268 1.888512 GATGTTTGGCCGGCATATCAT 59.111 47.619 30.85 24.53 0.00 2.45
3349 5269 1.133823 AGATGTTTGGCCGGCATATCA 60.134 47.619 30.85 21.00 0.00 2.15
3528 5478 5.779771 TCACCATCTTTTCTTATTGCCCTTT 59.220 36.000 0.00 0.00 0.00 3.11
3533 5485 9.860898 AAACTTATCACCATCTTTTCTTATTGC 57.139 29.630 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.