Multiple sequence alignment - TraesCS5D01G036900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G036900 chr5D 100.000 2554 0 0 1 2554 35988106 35985553 0.000000e+00 4717.0
1 TraesCS5D01G036900 chr5D 74.677 387 57 23 2207 2554 36002540 36002156 1.590000e-27 134.0
2 TraesCS5D01G036900 chr7B 90.604 894 49 7 1 881 614546772 614545901 0.000000e+00 1153.0
3 TraesCS5D01G036900 chr7B 89.241 316 20 2 567 881 614488268 614487966 1.430000e-102 383.0
4 TraesCS5D01G036900 chr7B 92.079 101 7 1 1859 1959 640018919 640019018 9.530000e-30 141.0
5 TraesCS5D01G036900 chr5B 88.953 860 67 10 952 1799 26936532 26935689 0.000000e+00 1037.0
6 TraesCS5D01G036900 chr5B 87.097 62 2 4 1966 2021 141580512 141580573 5.900000e-07 65.8
7 TraesCS5D01G036900 chr1B 91.027 769 45 13 1 762 5743783 5744534 0.000000e+00 1016.0
8 TraesCS5D01G036900 chr1B 85.698 888 92 21 6 878 659517099 659517966 0.000000e+00 904.0
9 TraesCS5D01G036900 chr1B 91.304 368 26 5 88 454 98942765 98942403 4.910000e-137 497.0
10 TraesCS5D01G036900 chr1B 76.761 142 22 7 2424 2554 597154286 597154427 4.560000e-08 69.4
11 TraesCS5D01G036900 chr1A 85.923 888 101 20 2 882 42107643 42108513 0.000000e+00 926.0
12 TraesCS5D01G036900 chr3A 90.990 677 50 9 3 675 94386044 94385375 0.000000e+00 902.0
13 TraesCS5D01G036900 chr2D 84.922 902 88 28 1 882 82881318 82880445 0.000000e+00 869.0
14 TraesCS5D01G036900 chr2D 93.306 493 19 4 1 480 18252265 18252756 0.000000e+00 715.0
15 TraesCS5D01G036900 chr2D 93.750 192 11 1 694 885 18253562 18253752 1.160000e-73 287.0
16 TraesCS5D01G036900 chr2D 80.609 361 54 9 517 875 45500894 45501240 5.420000e-67 265.0
17 TraesCS5D01G036900 chr3B 90.207 531 39 6 1 519 543706432 543706961 0.000000e+00 680.0
18 TraesCS5D01G036900 chr3B 99.074 108 1 0 518 625 543715532 543715639 7.210000e-46 195.0
19 TraesCS5D01G036900 chr7D 88.376 542 45 12 6 541 631063226 631063755 9.970000e-179 636.0
20 TraesCS5D01G036900 chr7D 89.524 105 10 1 1859 1962 431336613 431336509 5.730000e-27 132.0
21 TraesCS5D01G036900 chr7D 89.623 106 8 3 1859 1961 581389564 581389459 5.730000e-27 132.0
22 TraesCS5D01G036900 chr6B 80.048 837 125 26 1 806 716062726 716061901 1.320000e-162 582.0
23 TraesCS5D01G036900 chr4B 84.954 545 44 22 1 541 643300679 643301189 3.770000e-143 518.0
24 TraesCS5D01G036900 chr4B 91.509 106 6 3 1859 1962 252980497 252980393 2.650000e-30 143.0
25 TraesCS5D01G036900 chr5A 87.186 398 31 12 923 1305 24797568 24797176 3.900000e-118 435.0
26 TraesCS5D01G036900 chr5A 92.282 298 20 1 1292 1586 24796838 24796541 1.090000e-113 420.0
27 TraesCS5D01G036900 chr5A 84.712 399 39 11 2174 2554 24796153 24795759 1.850000e-101 379.0
28 TraesCS5D01G036900 chr5A 86.505 289 24 6 2188 2469 25024391 25024671 1.150000e-78 303.0
29 TraesCS5D01G036900 chr5A 80.000 195 20 7 2207 2386 25093746 25093556 2.670000e-25 126.0
30 TraesCS5D01G036900 chr7A 79.059 425 81 6 459 881 2801575 2801157 4.160000e-73 285.0
31 TraesCS5D01G036900 chr4D 80.970 268 42 6 611 877 434175253 434174994 1.200000e-48 204.0
32 TraesCS5D01G036900 chr4D 89.524 105 7 3 1859 1962 244612288 244612187 2.060000e-26 130.0
33 TraesCS5D01G036900 chrUn 75.568 352 64 18 529 868 34151499 34151840 1.220000e-33 154.0
34 TraesCS5D01G036900 chr4A 92.079 101 3 4 1860 1959 86935120 86935024 1.230000e-28 137.0
35 TraesCS5D01G036900 chr2B 90.476 105 8 2 1859 1962 400811539 400811436 1.230000e-28 137.0
36 TraesCS5D01G036900 chr6D 88.288 111 11 2 1853 1962 357739683 357739792 5.730000e-27 132.0
37 TraesCS5D01G036900 chr3D 86.916 107 12 2 1860 1964 10222621 10222515 4.460000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G036900 chr5D 35985553 35988106 2553 True 4717.000000 4717 100.000 1 2554 1 chr5D.!!$R1 2553
1 TraesCS5D01G036900 chr7B 614545901 614546772 871 True 1153.000000 1153 90.604 1 881 1 chr7B.!!$R2 880
2 TraesCS5D01G036900 chr5B 26935689 26936532 843 True 1037.000000 1037 88.953 952 1799 1 chr5B.!!$R1 847
3 TraesCS5D01G036900 chr1B 5743783 5744534 751 False 1016.000000 1016 91.027 1 762 1 chr1B.!!$F1 761
4 TraesCS5D01G036900 chr1B 659517099 659517966 867 False 904.000000 904 85.698 6 878 1 chr1B.!!$F3 872
5 TraesCS5D01G036900 chr1A 42107643 42108513 870 False 926.000000 926 85.923 2 882 1 chr1A.!!$F1 880
6 TraesCS5D01G036900 chr3A 94385375 94386044 669 True 902.000000 902 90.990 3 675 1 chr3A.!!$R1 672
7 TraesCS5D01G036900 chr2D 82880445 82881318 873 True 869.000000 869 84.922 1 882 1 chr2D.!!$R1 881
8 TraesCS5D01G036900 chr2D 18252265 18253752 1487 False 501.000000 715 93.528 1 885 2 chr2D.!!$F2 884
9 TraesCS5D01G036900 chr3B 543706432 543706961 529 False 680.000000 680 90.207 1 519 1 chr3B.!!$F1 518
10 TraesCS5D01G036900 chr7D 631063226 631063755 529 False 636.000000 636 88.376 6 541 1 chr7D.!!$F1 535
11 TraesCS5D01G036900 chr6B 716061901 716062726 825 True 582.000000 582 80.048 1 806 1 chr6B.!!$R1 805
12 TraesCS5D01G036900 chr4B 643300679 643301189 510 False 518.000000 518 84.954 1 541 1 chr4B.!!$F1 540
13 TraesCS5D01G036900 chr5A 24795759 24797568 1809 True 411.333333 435 88.060 923 2554 3 chr5A.!!$R2 1631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 1549 0.036164 AGTGATGCGGCAGTTACCAA 59.964 50.0 9.25 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 2810 0.03467 GCCTCAATGGAGCTTGGTCT 60.035 55.0 0.0 0.0 39.96 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 52 0.538057 AGTCACCTACGGACGAACCA 60.538 55.000 0.00 0.00 40.20 3.67
885 1510 1.005804 GGACGAGACGAACGGGTTTC 61.006 60.000 0.00 0.00 34.93 2.78
886 1511 1.005804 GACGAGACGAACGGGTTTCC 61.006 60.000 0.00 0.00 34.93 3.13
887 1512 1.288127 CGAGACGAACGGGTTTCCT 59.712 57.895 0.00 0.00 0.00 3.36
888 1513 0.731855 CGAGACGAACGGGTTTCCTC 60.732 60.000 0.00 0.00 0.00 3.71
889 1514 0.316204 GAGACGAACGGGTTTCCTCA 59.684 55.000 0.00 0.00 0.00 3.86
890 1515 0.754472 AGACGAACGGGTTTCCTCAA 59.246 50.000 0.00 0.00 0.00 3.02
891 1516 1.139455 AGACGAACGGGTTTCCTCAAA 59.861 47.619 0.00 0.00 0.00 2.69
892 1517 1.262417 GACGAACGGGTTTCCTCAAAC 59.738 52.381 0.00 0.00 41.22 2.93
893 1518 0.233848 CGAACGGGTTTCCTCAAACG 59.766 55.000 0.00 0.00 42.66 3.60
894 1519 0.589708 GAACGGGTTTCCTCAAACGG 59.410 55.000 0.00 0.00 42.66 4.44
895 1520 0.107066 AACGGGTTTCCTCAAACGGT 60.107 50.000 0.00 0.00 42.66 4.83
896 1521 0.107066 ACGGGTTTCCTCAAACGGTT 60.107 50.000 0.00 0.00 42.66 4.44
897 1522 0.589708 CGGGTTTCCTCAAACGGTTC 59.410 55.000 0.00 0.00 42.66 3.62
898 1523 1.812708 CGGGTTTCCTCAAACGGTTCT 60.813 52.381 0.00 0.00 42.66 3.01
899 1524 1.878088 GGGTTTCCTCAAACGGTTCTC 59.122 52.381 0.00 0.00 42.66 2.87
900 1525 1.878088 GGTTTCCTCAAACGGTTCTCC 59.122 52.381 0.00 0.00 42.66 3.71
901 1526 2.486727 GGTTTCCTCAAACGGTTCTCCT 60.487 50.000 0.00 0.00 42.66 3.69
902 1527 3.211865 GTTTCCTCAAACGGTTCTCCTT 58.788 45.455 0.00 0.00 32.83 3.36
903 1528 2.833631 TCCTCAAACGGTTCTCCTTC 57.166 50.000 0.00 0.00 0.00 3.46
904 1529 2.326428 TCCTCAAACGGTTCTCCTTCT 58.674 47.619 0.00 0.00 0.00 2.85
905 1530 3.503365 TCCTCAAACGGTTCTCCTTCTA 58.497 45.455 0.00 0.00 0.00 2.10
906 1531 3.510360 TCCTCAAACGGTTCTCCTTCTAG 59.490 47.826 0.00 0.00 0.00 2.43
907 1532 3.258622 CCTCAAACGGTTCTCCTTCTAGT 59.741 47.826 0.00 0.00 0.00 2.57
908 1533 4.238514 CTCAAACGGTTCTCCTTCTAGTG 58.761 47.826 0.00 0.00 0.00 2.74
909 1534 3.893200 TCAAACGGTTCTCCTTCTAGTGA 59.107 43.478 0.00 0.00 0.00 3.41
910 1535 4.527038 TCAAACGGTTCTCCTTCTAGTGAT 59.473 41.667 0.00 0.00 0.00 3.06
911 1536 4.457834 AACGGTTCTCCTTCTAGTGATG 57.542 45.455 0.00 0.00 0.00 3.07
912 1537 2.166664 ACGGTTCTCCTTCTAGTGATGC 59.833 50.000 0.00 0.00 0.00 3.91
913 1538 2.796383 CGGTTCTCCTTCTAGTGATGCG 60.796 54.545 0.00 0.00 0.00 4.73
914 1539 2.482142 GGTTCTCCTTCTAGTGATGCGG 60.482 54.545 0.00 0.00 0.00 5.69
915 1540 0.747255 TCTCCTTCTAGTGATGCGGC 59.253 55.000 0.00 0.00 0.00 6.53
916 1541 0.461548 CTCCTTCTAGTGATGCGGCA 59.538 55.000 4.58 4.58 0.00 5.69
917 1542 0.461548 TCCTTCTAGTGATGCGGCAG 59.538 55.000 9.25 0.00 0.00 4.85
918 1543 0.176680 CCTTCTAGTGATGCGGCAGT 59.823 55.000 9.25 0.00 0.00 4.40
919 1544 1.406069 CCTTCTAGTGATGCGGCAGTT 60.406 52.381 9.25 0.00 0.00 3.16
920 1545 2.159099 CCTTCTAGTGATGCGGCAGTTA 60.159 50.000 9.25 0.00 0.00 2.24
921 1546 2.579207 TCTAGTGATGCGGCAGTTAC 57.421 50.000 9.25 7.34 0.00 2.50
922 1547 1.136305 TCTAGTGATGCGGCAGTTACC 59.864 52.381 9.25 0.00 0.00 2.85
923 1548 0.899019 TAGTGATGCGGCAGTTACCA 59.101 50.000 9.25 0.00 0.00 3.25
924 1549 0.036164 AGTGATGCGGCAGTTACCAA 59.964 50.000 9.25 0.00 0.00 3.67
925 1550 0.878416 GTGATGCGGCAGTTACCAAA 59.122 50.000 9.25 0.00 0.00 3.28
926 1551 1.268352 GTGATGCGGCAGTTACCAAAA 59.732 47.619 9.25 0.00 0.00 2.44
927 1552 1.957177 TGATGCGGCAGTTACCAAAAA 59.043 42.857 9.25 0.00 0.00 1.94
955 1582 3.939592 GACCCTGTAAACTGGCTAATGTC 59.060 47.826 0.71 0.03 34.08 3.06
984 1611 2.246469 TGCTTGCTAAAGGGATTGCAA 58.754 42.857 0.00 0.00 42.16 4.08
1051 1678 5.620429 GCTGTCCAACTGAGAGTACTAAGTC 60.620 48.000 0.00 0.00 36.87 3.01
1086 1713 1.404391 CAGCTGATGACATGCTTTCCC 59.596 52.381 8.42 0.00 34.51 3.97
1112 1739 5.426504 CTTGGAGAAGCTGTACATTCAGAT 58.573 41.667 10.93 0.00 37.61 2.90
1124 1751 3.548770 ACATTCAGATTGCGGTGATGAT 58.451 40.909 0.00 0.00 0.00 2.45
1125 1752 3.949754 ACATTCAGATTGCGGTGATGATT 59.050 39.130 0.00 0.00 0.00 2.57
1140 1767 6.020121 CGGTGATGATTTTCTTCATTCATTGC 60.020 38.462 0.00 0.00 36.48 3.56
1144 1771 6.656314 TGATTTTCTTCATTCATTGCATGC 57.344 33.333 11.82 11.82 0.00 4.06
1183 1811 9.381033 GATCTTCTTCTCTTCTCAAATGATTGA 57.619 33.333 0.00 0.00 43.18 2.57
1186 1814 9.776158 CTTCTTCTCTTCTCAAATGATTGATTG 57.224 33.333 0.00 0.00 44.29 2.67
1233 1867 1.319614 ACGTGTGCCAAAGCCAAACT 61.320 50.000 0.00 0.00 38.69 2.66
1253 1887 1.730487 TTTGTGGCGTCGCAAACAT 59.270 47.368 23.73 0.00 45.15 2.71
1282 1916 5.715921 TCTGACCAGATGTCCTAATATCCA 58.284 41.667 0.00 0.00 43.78 3.41
1310 2299 7.103641 TGAAGACAATAGTGTTGGATTCCTAC 58.896 38.462 9.98 9.98 38.41 3.18
1398 2387 0.606673 GAAGCTTCGGGTTTGCTCCT 60.607 55.000 11.40 0.00 35.85 3.69
1399 2388 0.690762 AAGCTTCGGGTTTGCTCCTA 59.309 50.000 0.00 0.00 35.85 2.94
1421 2410 6.261826 CCTACAATAAGGAATTCTTGGCAGAG 59.738 42.308 5.23 0.20 39.15 3.35
1426 2415 1.888512 GGAATTCTTGGCAGAGCAACA 59.111 47.619 5.23 0.00 0.00 3.33
1429 2418 4.340381 GGAATTCTTGGCAGAGCAACATAT 59.660 41.667 5.23 0.00 0.00 1.78
1558 2547 6.222038 TGATCCATTCTTAGTGTAGTGTCC 57.778 41.667 0.00 0.00 0.00 4.02
1563 2552 6.708949 TCCATTCTTAGTGTAGTGTCCAAAAC 59.291 38.462 0.00 0.00 0.00 2.43
1581 2570 1.950630 CGCTTGCCACTTGGTTTGC 60.951 57.895 0.00 0.00 37.57 3.68
1588 2577 1.070601 GCCACTTGGTTTGCTCCATTT 59.929 47.619 0.00 0.00 37.33 2.32
1599 2588 2.778299 TGCTCCATTTACGAGTTGCTT 58.222 42.857 0.00 0.00 0.00 3.91
1609 2598 2.778299 ACGAGTTGCTTTTGCCTATCA 58.222 42.857 0.00 0.00 46.87 2.15
1610 2599 2.484264 ACGAGTTGCTTTTGCCTATCAC 59.516 45.455 0.00 0.00 46.87 3.06
1641 2634 1.691196 TTTCTGTTTGGTCCAGCCTG 58.309 50.000 0.00 0.00 38.35 4.85
1656 2649 0.685097 GCCTGGACTAGTTGTGGTGA 59.315 55.000 0.00 0.00 0.00 4.02
1659 2652 3.810743 GCCTGGACTAGTTGTGGTGATTT 60.811 47.826 0.00 0.00 0.00 2.17
1663 2656 6.428083 TGGACTAGTTGTGGTGATTTTAGA 57.572 37.500 0.00 0.00 0.00 2.10
1693 2686 9.090103 TGTAATACTATCCTGGAAACTATCTGG 57.910 37.037 0.00 0.00 0.00 3.86
1694 2687 9.091220 GTAATACTATCCTGGAAACTATCTGGT 57.909 37.037 0.00 0.00 0.00 4.00
1695 2688 5.878406 ACTATCCTGGAAACTATCTGGTG 57.122 43.478 0.00 0.00 0.00 4.17
1696 2689 5.529289 ACTATCCTGGAAACTATCTGGTGA 58.471 41.667 0.00 0.00 0.00 4.02
1697 2690 4.762289 ATCCTGGAAACTATCTGGTGAC 57.238 45.455 0.00 0.00 0.00 3.67
1719 2712 8.784043 GTGACATTAAAGAACCTATCTGTGTTT 58.216 33.333 0.00 0.00 38.79 2.83
1729 2722 4.644685 ACCTATCTGTGTTTGTTTGCTTGT 59.355 37.500 0.00 0.00 0.00 3.16
1735 2728 7.328277 TCTGTGTTTGTTTGCTTGTTATACT 57.672 32.000 0.00 0.00 0.00 2.12
1736 2729 8.439993 TCTGTGTTTGTTTGCTTGTTATACTA 57.560 30.769 0.00 0.00 0.00 1.82
1737 2730 9.062524 TCTGTGTTTGTTTGCTTGTTATACTAT 57.937 29.630 0.00 0.00 0.00 2.12
1787 2782 7.283354 AGCCTATCCTTTAGTGTTTTGATTAGC 59.717 37.037 0.00 0.00 0.00 3.09
1792 2787 6.206634 TCCTTTAGTGTTTTGATTAGCTGTGG 59.793 38.462 0.00 0.00 0.00 4.17
1799 2794 5.293079 TGTTTTGATTAGCTGTGGTTTTTGC 59.707 36.000 0.00 0.00 0.00 3.68
1800 2795 3.281341 TGATTAGCTGTGGTTTTTGCG 57.719 42.857 0.00 0.00 0.00 4.85
1801 2796 2.881513 TGATTAGCTGTGGTTTTTGCGA 59.118 40.909 0.00 0.00 0.00 5.10
1802 2797 3.316588 TGATTAGCTGTGGTTTTTGCGAA 59.683 39.130 0.00 0.00 0.00 4.70
1803 2798 3.784701 TTAGCTGTGGTTTTTGCGAAA 57.215 38.095 0.00 0.00 0.00 3.46
1804 2799 2.663826 AGCTGTGGTTTTTGCGAAAA 57.336 40.000 7.81 7.81 32.53 2.29
1805 2800 3.177997 AGCTGTGGTTTTTGCGAAAAT 57.822 38.095 14.84 0.00 37.12 1.82
1806 2801 3.530535 AGCTGTGGTTTTTGCGAAAATT 58.469 36.364 14.84 0.00 37.12 1.82
1807 2802 3.309410 AGCTGTGGTTTTTGCGAAAATTG 59.691 39.130 14.84 5.58 37.12 2.32
1808 2803 3.606422 CTGTGGTTTTTGCGAAAATTGC 58.394 40.909 14.84 8.51 37.12 3.56
1809 2804 3.265791 TGTGGTTTTTGCGAAAATTGCT 58.734 36.364 14.84 0.00 37.12 3.91
1810 2805 3.686726 TGTGGTTTTTGCGAAAATTGCTT 59.313 34.783 14.84 0.00 37.12 3.91
1811 2806 4.154918 TGTGGTTTTTGCGAAAATTGCTTT 59.845 33.333 14.84 0.00 37.12 3.51
1812 2807 5.092105 GTGGTTTTTGCGAAAATTGCTTTT 58.908 33.333 14.84 0.00 37.12 2.27
1813 2808 5.003308 GTGGTTTTTGCGAAAATTGCTTTTG 59.997 36.000 14.84 0.00 37.12 2.44
1814 2809 4.498681 GGTTTTTGCGAAAATTGCTTTTGG 59.501 37.500 14.84 0.00 37.12 3.28
1815 2810 5.327891 GTTTTTGCGAAAATTGCTTTTGGA 58.672 33.333 14.84 0.00 37.12 3.53
1816 2811 4.792528 TTTGCGAAAATTGCTTTTGGAG 57.207 36.364 0.00 0.00 34.73 3.86
1817 2812 3.724508 TGCGAAAATTGCTTTTGGAGA 57.275 38.095 0.00 0.00 34.73 3.71
1818 2813 3.380142 TGCGAAAATTGCTTTTGGAGAC 58.620 40.909 0.00 0.00 34.73 3.36
1819 2814 2.731451 GCGAAAATTGCTTTTGGAGACC 59.269 45.455 0.00 0.00 34.73 3.85
1820 2815 3.798548 GCGAAAATTGCTTTTGGAGACCA 60.799 43.478 0.00 0.00 34.73 4.02
1821 2816 4.367450 CGAAAATTGCTTTTGGAGACCAA 58.633 39.130 0.00 0.00 42.29 3.67
1822 2817 4.445385 CGAAAATTGCTTTTGGAGACCAAG 59.555 41.667 3.49 0.00 44.84 3.61
1823 2818 3.391506 AATTGCTTTTGGAGACCAAGC 57.608 42.857 7.32 7.32 44.84 4.01
1824 2819 2.071778 TTGCTTTTGGAGACCAAGCT 57.928 45.000 13.28 0.00 44.84 3.74
1825 2820 1.609208 TGCTTTTGGAGACCAAGCTC 58.391 50.000 13.28 0.00 44.84 4.09
1833 2828 2.035530 GAGACCAAGCTCCATTGAGG 57.964 55.000 0.00 0.00 39.14 3.86
1834 2829 0.034670 AGACCAAGCTCCATTGAGGC 60.035 55.000 0.00 0.00 39.14 4.70
1835 2830 1.000396 ACCAAGCTCCATTGAGGCC 60.000 57.895 0.00 0.00 39.14 5.19
1836 2831 1.305623 CCAAGCTCCATTGAGGCCT 59.694 57.895 3.86 3.86 39.14 5.19
1837 2832 0.324091 CCAAGCTCCATTGAGGCCTT 60.324 55.000 6.77 0.00 39.14 4.35
1838 2833 1.101331 CAAGCTCCATTGAGGCCTTC 58.899 55.000 6.77 0.10 39.14 3.46
1839 2834 0.700564 AAGCTCCATTGAGGCCTTCA 59.299 50.000 6.77 3.35 39.14 3.02
1840 2835 0.924823 AGCTCCATTGAGGCCTTCAT 59.075 50.000 6.77 0.00 39.14 2.57
1841 2836 1.287146 AGCTCCATTGAGGCCTTCATT 59.713 47.619 6.77 0.04 39.14 2.57
1842 2837 2.105766 GCTCCATTGAGGCCTTCATTT 58.894 47.619 6.77 0.00 39.14 2.32
1843 2838 2.159142 GCTCCATTGAGGCCTTCATTTG 60.159 50.000 6.77 7.54 39.14 2.32
1844 2839 1.826720 TCCATTGAGGCCTTCATTTGC 59.173 47.619 6.77 0.00 35.27 3.68
1845 2840 1.551430 CCATTGAGGCCTTCATTTGCA 59.449 47.619 6.77 0.00 35.27 4.08
1846 2841 2.027929 CCATTGAGGCCTTCATTTGCAA 60.028 45.455 6.77 4.75 35.27 4.08
1847 2842 3.370103 CCATTGAGGCCTTCATTTGCAAT 60.370 43.478 6.77 7.28 35.27 3.56
1848 2843 4.258543 CATTGAGGCCTTCATTTGCAATT 58.741 39.130 6.77 0.00 35.27 2.32
1849 2844 4.354893 TTGAGGCCTTCATTTGCAATTT 57.645 36.364 6.77 0.00 35.27 1.82
1850 2845 4.354893 TGAGGCCTTCATTTGCAATTTT 57.645 36.364 6.77 0.00 0.00 1.82
1851 2846 4.716794 TGAGGCCTTCATTTGCAATTTTT 58.283 34.783 6.77 0.00 0.00 1.94
1852 2847 5.862845 TGAGGCCTTCATTTGCAATTTTTA 58.137 33.333 6.77 0.00 0.00 1.52
1853 2848 6.294473 TGAGGCCTTCATTTGCAATTTTTAA 58.706 32.000 6.77 0.00 0.00 1.52
1854 2849 6.769822 TGAGGCCTTCATTTGCAATTTTTAAA 59.230 30.769 6.77 0.00 0.00 1.52
1855 2850 7.284034 TGAGGCCTTCATTTGCAATTTTTAAAA 59.716 29.630 6.77 0.00 0.00 1.52
1856 2851 7.650890 AGGCCTTCATTTGCAATTTTTAAAAG 58.349 30.769 0.00 0.00 0.00 2.27
1857 2852 6.363088 GGCCTTCATTTGCAATTTTTAAAAGC 59.637 34.615 0.00 2.47 0.00 3.51
1858 2853 6.363088 GCCTTCATTTGCAATTTTTAAAAGCC 59.637 34.615 0.00 0.00 0.00 4.35
1859 2854 7.424001 CCTTCATTTGCAATTTTTAAAAGCCA 58.576 30.769 0.00 0.00 0.00 4.75
1860 2855 8.083462 CCTTCATTTGCAATTTTTAAAAGCCAT 58.917 29.630 0.00 0.00 0.00 4.40
1909 2904 9.559732 TGAAACAAATACAGATATACATGGAGG 57.440 33.333 0.00 0.00 0.00 4.30
1910 2905 7.986085 AACAAATACAGATATACATGGAGGC 57.014 36.000 0.00 0.00 0.00 4.70
1911 2906 7.078249 ACAAATACAGATATACATGGAGGCA 57.922 36.000 0.00 0.00 0.00 4.75
1912 2907 7.693132 ACAAATACAGATATACATGGAGGCAT 58.307 34.615 0.00 0.00 0.00 4.40
1913 2908 8.825774 ACAAATACAGATATACATGGAGGCATA 58.174 33.333 0.00 0.00 0.00 3.14
1914 2909 9.671279 CAAATACAGATATACATGGAGGCATAA 57.329 33.333 0.00 0.00 0.00 1.90
1915 2910 9.672673 AAATACAGATATACATGGAGGCATAAC 57.327 33.333 0.00 0.00 0.00 1.89
1916 2911 6.686484 ACAGATATACATGGAGGCATAACA 57.314 37.500 0.00 0.00 0.00 2.41
1917 2912 6.467677 ACAGATATACATGGAGGCATAACAC 58.532 40.000 0.00 0.00 0.00 3.32
1918 2913 5.877012 CAGATATACATGGAGGCATAACACC 59.123 44.000 0.00 0.00 0.00 4.16
1919 2914 3.508845 ATACATGGAGGCATAACACCC 57.491 47.619 0.00 0.00 0.00 4.61
1920 2915 0.998928 ACATGGAGGCATAACACCCA 59.001 50.000 0.00 0.00 0.00 4.51
1921 2916 1.570501 ACATGGAGGCATAACACCCAT 59.429 47.619 0.00 0.00 38.07 4.00
1922 2917 1.958579 CATGGAGGCATAACACCCATG 59.041 52.381 0.00 0.00 45.38 3.66
1923 2918 0.998928 TGGAGGCATAACACCCATGT 59.001 50.000 0.00 0.00 42.46 3.21
1924 2919 4.803223 CATGGAGGCATAACACCCATGTG 61.803 52.174 7.63 0.00 45.50 3.21
1938 2933 5.229423 CACCCATGTGTGTAAATTTTCAGG 58.771 41.667 0.00 0.00 37.72 3.86
1939 2934 4.283212 ACCCATGTGTGTAAATTTTCAGGG 59.717 41.667 14.02 14.02 37.43 4.45
1940 2935 4.526262 CCCATGTGTGTAAATTTTCAGGGA 59.474 41.667 11.47 0.00 33.23 4.20
1941 2936 5.336690 CCCATGTGTGTAAATTTTCAGGGAG 60.337 44.000 11.47 0.00 33.23 4.30
1942 2937 5.476599 CCATGTGTGTAAATTTTCAGGGAGA 59.523 40.000 0.00 0.00 0.00 3.71
1943 2938 6.015519 CCATGTGTGTAAATTTTCAGGGAGAA 60.016 38.462 0.00 0.00 0.00 2.87
1944 2939 7.432869 CATGTGTGTAAATTTTCAGGGAGAAA 58.567 34.615 0.00 0.00 44.21 2.52
1945 2940 7.595819 TGTGTGTAAATTTTCAGGGAGAAAT 57.404 32.000 0.00 0.00 45.15 2.17
1946 2941 8.698973 TGTGTGTAAATTTTCAGGGAGAAATA 57.301 30.769 0.00 0.00 45.15 1.40
1947 2942 8.573035 TGTGTGTAAATTTTCAGGGAGAAATAC 58.427 33.333 0.00 0.00 45.15 1.89
1948 2943 7.749126 GTGTGTAAATTTTCAGGGAGAAATACG 59.251 37.037 0.00 0.00 45.15 3.06
1949 2944 7.446013 TGTGTAAATTTTCAGGGAGAAATACGT 59.554 33.333 0.00 0.00 45.15 3.57
1950 2945 8.294577 GTGTAAATTTTCAGGGAGAAATACGTT 58.705 33.333 0.00 0.00 45.15 3.99
1951 2946 8.293867 TGTAAATTTTCAGGGAGAAATACGTTG 58.706 33.333 0.00 0.00 45.15 4.10
1952 2947 7.519032 AAATTTTCAGGGAGAAATACGTTGA 57.481 32.000 0.00 0.00 45.15 3.18
1953 2948 7.519032 AATTTTCAGGGAGAAATACGTTGAA 57.481 32.000 0.00 0.00 45.15 2.69
1954 2949 6.945938 TTTTCAGGGAGAAATACGTTGAAA 57.054 33.333 0.00 0.00 45.15 2.69
1955 2950 7.519032 TTTTCAGGGAGAAATACGTTGAAAT 57.481 32.000 0.00 0.00 45.15 2.17
1956 2951 6.494893 TTCAGGGAGAAATACGTTGAAATG 57.505 37.500 0.00 0.00 32.05 2.32
1957 2952 5.800296 TCAGGGAGAAATACGTTGAAATGA 58.200 37.500 0.00 0.00 0.00 2.57
1958 2953 5.874810 TCAGGGAGAAATACGTTGAAATGAG 59.125 40.000 0.00 0.00 0.00 2.90
1959 2954 5.065218 CAGGGAGAAATACGTTGAAATGAGG 59.935 44.000 0.00 0.00 0.00 3.86
1960 2955 4.335594 GGGAGAAATACGTTGAAATGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
1961 2956 4.201920 GGAGAAATACGTTGAAATGAGGGC 60.202 45.833 0.00 0.00 0.00 5.19
1962 2957 3.374058 AGAAATACGTTGAAATGAGGGCG 59.626 43.478 0.00 0.00 0.00 6.13
1963 2958 2.396590 ATACGTTGAAATGAGGGCGT 57.603 45.000 0.00 0.00 36.52 5.68
1964 2959 2.172851 TACGTTGAAATGAGGGCGTT 57.827 45.000 0.00 0.00 34.38 4.84
1965 2960 1.314730 ACGTTGAAATGAGGGCGTTT 58.685 45.000 0.00 0.00 35.99 3.60
1966 2961 1.265905 ACGTTGAAATGAGGGCGTTTC 59.734 47.619 0.00 0.00 45.82 2.78
1970 2965 2.636768 GAAATGAGGGCGTTTCAAGG 57.363 50.000 0.00 0.00 45.25 3.61
1971 2966 1.886542 GAAATGAGGGCGTTTCAAGGT 59.113 47.619 0.00 0.00 45.25 3.50
1972 2967 2.871096 AATGAGGGCGTTTCAAGGTA 57.129 45.000 0.00 0.00 0.00 3.08
1973 2968 3.366052 AATGAGGGCGTTTCAAGGTAT 57.634 42.857 0.00 0.00 0.00 2.73
1974 2969 2.871096 TGAGGGCGTTTCAAGGTATT 57.129 45.000 0.00 0.00 0.00 1.89
1975 2970 3.149005 TGAGGGCGTTTCAAGGTATTT 57.851 42.857 0.00 0.00 0.00 1.40
1976 2971 3.078837 TGAGGGCGTTTCAAGGTATTTC 58.921 45.455 0.00 0.00 0.00 2.17
1977 2972 3.078837 GAGGGCGTTTCAAGGTATTTCA 58.921 45.455 0.00 0.00 0.00 2.69
1978 2973 3.694566 GAGGGCGTTTCAAGGTATTTCAT 59.305 43.478 0.00 0.00 0.00 2.57
1979 2974 3.694566 AGGGCGTTTCAAGGTATTTCATC 59.305 43.478 0.00 0.00 0.00 2.92
1980 2975 3.181490 GGGCGTTTCAAGGTATTTCATCC 60.181 47.826 0.00 0.00 0.00 3.51
1981 2976 3.694566 GGCGTTTCAAGGTATTTCATCCT 59.305 43.478 0.00 0.00 35.34 3.24
1982 2977 4.438744 GGCGTTTCAAGGTATTTCATCCTG 60.439 45.833 0.00 0.00 33.97 3.86
1983 2978 4.394920 GCGTTTCAAGGTATTTCATCCTGA 59.605 41.667 0.00 0.00 33.97 3.86
1984 2979 5.106317 GCGTTTCAAGGTATTTCATCCTGAA 60.106 40.000 0.00 0.00 34.03 3.02
1985 2980 6.404734 GCGTTTCAAGGTATTTCATCCTGAAT 60.405 38.462 0.00 0.00 36.11 2.57
1986 2981 6.968904 CGTTTCAAGGTATTTCATCCTGAATG 59.031 38.462 0.00 0.00 36.11 2.67
1987 2982 7.362056 CGTTTCAAGGTATTTCATCCTGAATGT 60.362 37.037 0.00 0.00 36.11 2.71
1988 2983 8.306761 GTTTCAAGGTATTTCATCCTGAATGTT 58.693 33.333 0.00 0.00 36.11 2.71
1989 2984 8.421249 TTCAAGGTATTTCATCCTGAATGTTT 57.579 30.769 0.00 0.00 36.11 2.83
1990 2985 9.527157 TTCAAGGTATTTCATCCTGAATGTTTA 57.473 29.630 0.00 0.00 36.11 2.01
1991 2986 8.956426 TCAAGGTATTTCATCCTGAATGTTTAC 58.044 33.333 0.00 0.00 36.11 2.01
1992 2987 8.739039 CAAGGTATTTCATCCTGAATGTTTACA 58.261 33.333 0.00 0.00 36.11 2.41
1993 2988 8.281212 AGGTATTTCATCCTGAATGTTTACAC 57.719 34.615 0.00 0.00 36.11 2.90
1994 2989 7.888021 AGGTATTTCATCCTGAATGTTTACACA 59.112 33.333 0.00 0.00 36.11 3.72
1995 2990 7.968405 GGTATTTCATCCTGAATGTTTACACAC 59.032 37.037 0.00 0.00 36.11 3.82
1996 2991 6.951062 TTTCATCCTGAATGTTTACACACA 57.049 33.333 0.00 0.00 36.11 3.72
1997 2992 7.523293 TTTCATCCTGAATGTTTACACACAT 57.477 32.000 0.00 0.00 39.17 3.21
1998 2993 6.741992 TCATCCTGAATGTTTACACACATC 57.258 37.500 0.00 0.00 36.30 3.06
1999 2994 6.237154 TCATCCTGAATGTTTACACACATCA 58.763 36.000 0.90 0.90 36.30 3.07
2000 2995 5.940192 TCCTGAATGTTTACACACATCAC 57.060 39.130 0.00 0.00 36.30 3.06
2001 2996 5.372373 TCCTGAATGTTTACACACATCACA 58.628 37.500 0.00 0.00 36.30 3.58
2002 2997 6.003326 TCCTGAATGTTTACACACATCACAT 58.997 36.000 0.00 0.00 36.30 3.21
2003 2998 6.149308 TCCTGAATGTTTACACACATCACATC 59.851 38.462 0.00 0.00 36.30 3.06
2004 2999 6.252967 TGAATGTTTACACACATCACATCC 57.747 37.500 0.00 0.00 36.30 3.51
2005 3000 6.003326 TGAATGTTTACACACATCACATCCT 58.997 36.000 0.00 0.00 36.30 3.24
2006 3001 6.489700 TGAATGTTTACACACATCACATCCTT 59.510 34.615 0.00 0.00 36.30 3.36
2007 3002 5.687770 TGTTTACACACATCACATCCTTG 57.312 39.130 0.00 0.00 0.00 3.61
2008 3003 5.129634 TGTTTACACACATCACATCCTTGT 58.870 37.500 0.00 0.00 36.15 3.16
2009 3004 6.292150 TGTTTACACACATCACATCCTTGTA 58.708 36.000 0.00 0.00 33.76 2.41
2010 3005 6.939730 TGTTTACACACATCACATCCTTGTAT 59.060 34.615 0.00 0.00 33.76 2.29
2011 3006 8.097662 TGTTTACACACATCACATCCTTGTATA 58.902 33.333 0.00 0.00 33.76 1.47
2012 3007 8.388103 GTTTACACACATCACATCCTTGTATAC 58.612 37.037 0.00 0.00 33.76 1.47
2013 3008 6.299805 ACACACATCACATCCTTGTATACT 57.700 37.500 4.17 0.00 33.76 2.12
2014 3009 6.711277 ACACACATCACATCCTTGTATACTT 58.289 36.000 4.17 0.00 33.76 2.24
2015 3010 6.595326 ACACACATCACATCCTTGTATACTTG 59.405 38.462 4.17 0.00 33.76 3.16
2016 3011 6.595326 CACACATCACATCCTTGTATACTTGT 59.405 38.462 4.17 0.00 33.76 3.16
2017 3012 7.763985 CACACATCACATCCTTGTATACTTGTA 59.236 37.037 4.17 0.00 33.76 2.41
2018 3013 8.486210 ACACATCACATCCTTGTATACTTGTAT 58.514 33.333 4.17 0.00 33.76 2.29
2019 3014 9.981114 CACATCACATCCTTGTATACTTGTATA 57.019 33.333 4.17 0.00 33.76 1.47
2051 3046 9.598517 TTGCAGATTTTTATGAAACTGAAAAGT 57.401 25.926 0.00 0.00 0.00 2.66
2052 3047 9.598517 TGCAGATTTTTATGAAACTGAAAAGTT 57.401 25.926 0.00 0.00 0.00 2.66
2073 3068 4.510038 TCAAATTTTGAAGCTGAGCTCC 57.490 40.909 7.72 0.00 38.25 4.70
2074 3069 3.890756 TCAAATTTTGAAGCTGAGCTCCA 59.109 39.130 7.72 0.00 38.25 3.86
2075 3070 4.341806 TCAAATTTTGAAGCTGAGCTCCAA 59.658 37.500 7.72 4.10 38.25 3.53
2076 3071 4.942761 AATTTTGAAGCTGAGCTCCAAA 57.057 36.364 15.00 15.00 40.84 3.28
2078 3073 4.942761 TTTTGAAGCTGAGCTCCAAAAT 57.057 36.364 24.54 0.09 45.12 1.82
2079 3074 3.928727 TTGAAGCTGAGCTCCAAAATG 57.071 42.857 7.72 0.00 38.25 2.32
2080 3075 1.542915 TGAAGCTGAGCTCCAAAATGC 59.457 47.619 7.72 6.09 38.25 3.56
2081 3076 0.893447 AAGCTGAGCTCCAAAATGCC 59.107 50.000 7.72 0.00 38.25 4.40
2082 3077 0.969409 AGCTGAGCTCCAAAATGCCC 60.969 55.000 12.15 0.00 30.62 5.36
2083 3078 1.953231 GCTGAGCTCCAAAATGCCCC 61.953 60.000 12.15 0.00 0.00 5.80
2084 3079 0.612732 CTGAGCTCCAAAATGCCCCA 60.613 55.000 12.15 0.00 0.00 4.96
2085 3080 0.899717 TGAGCTCCAAAATGCCCCAC 60.900 55.000 12.15 0.00 0.00 4.61
2100 3095 8.838649 AAATGCCCCACTCTTAAGTTTATAAT 57.161 30.769 1.63 0.00 31.71 1.28
2140 3259 1.556564 CACATGAGTACTTACCGCCG 58.443 55.000 0.00 0.00 0.00 6.46
2172 3312 1.618837 TGGTCCGACTTCTCTTCAAGG 59.381 52.381 0.00 0.00 0.00 3.61
2176 3316 3.741856 GTCCGACTTCTCTTCAAGGTTTC 59.258 47.826 0.00 0.00 0.00 2.78
2181 3321 3.388350 ACTTCTCTTCAAGGTTTCGAGGT 59.612 43.478 0.00 0.00 0.00 3.85
2201 3341 1.133945 TGGTTTGCACAAGGCTAGTGA 60.134 47.619 7.69 0.00 45.15 3.41
2228 3368 2.484264 GGTGAAGTGATTGAAAGGGTCG 59.516 50.000 0.00 0.00 0.00 4.79
2238 3378 2.846193 TGAAAGGGTCGTTCTTTGGAG 58.154 47.619 5.46 0.00 34.92 3.86
2247 3387 4.695928 GGTCGTTCTTTGGAGCTAAGATTT 59.304 41.667 0.00 0.00 32.09 2.17
2263 3403 6.632035 GCTAAGATTTTTCGATCATTGCTGAG 59.368 38.462 0.00 0.00 34.12 3.35
2270 3410 3.711086 TCGATCATTGCTGAGAGCTAAC 58.289 45.455 0.00 0.00 42.97 2.34
2286 3426 2.169978 GCTAACCCTAGGTACCAGTTGG 59.830 54.545 15.94 13.99 33.12 3.77
2344 3493 5.112686 CAGTTCTTGGAAGTAGTGATAGGC 58.887 45.833 0.00 0.00 30.86 3.93
2349 3498 6.173339 TCTTGGAAGTAGTGATAGGCAAAAG 58.827 40.000 0.00 0.00 0.00 2.27
2350 3499 5.755409 TGGAAGTAGTGATAGGCAAAAGA 57.245 39.130 0.00 0.00 0.00 2.52
2356 3505 3.084786 AGTGATAGGCAAAAGAAGTGGC 58.915 45.455 0.00 0.00 41.67 5.01
2388 3537 9.520515 AAAGTTATCCTTCAATCTAGCTTTCAA 57.479 29.630 0.00 0.00 31.27 2.69
2396 3545 6.246420 TCAATCTAGCTTTCAAAAGACTGC 57.754 37.500 6.67 0.00 38.28 4.40
2398 3547 6.148480 TCAATCTAGCTTTCAAAAGACTGCTC 59.852 38.462 6.67 0.00 38.28 4.26
2399 3548 4.319177 TCTAGCTTTCAAAAGACTGCTCC 58.681 43.478 6.67 0.00 38.28 4.70
2400 3549 3.220674 AGCTTTCAAAAGACTGCTCCT 57.779 42.857 6.67 0.00 38.28 3.69
2401 3550 2.883386 AGCTTTCAAAAGACTGCTCCTG 59.117 45.455 6.67 0.00 38.28 3.86
2404 3553 3.769739 TTCAAAAGACTGCTCCTGCTA 57.230 42.857 0.00 0.00 40.48 3.49
2409 3567 0.536260 AGACTGCTCCTGCTAGCTTG 59.464 55.000 17.23 8.73 43.19 4.01
2416 3574 5.163258 ACTGCTCCTGCTAGCTTGTTATAAT 60.163 40.000 17.23 0.00 43.19 1.28
2422 3580 6.553476 TCCTGCTAGCTTGTTATAATCCTACA 59.447 38.462 17.23 0.00 0.00 2.74
2427 3585 8.507249 GCTAGCTTGTTATAATCCTACATTTGG 58.493 37.037 7.70 0.00 0.00 3.28
2428 3586 9.778741 CTAGCTTGTTATAATCCTACATTTGGA 57.221 33.333 0.00 0.00 38.06 3.53
2437 3595 1.468054 CCTACATTTGGAAGCAAGCGC 60.468 52.381 0.00 0.00 38.99 5.92
2509 3667 5.962433 AGAACATGATGCTGAAATGAAAGG 58.038 37.500 0.00 0.00 0.00 3.11
2518 3676 5.916318 TGCTGAAATGAAAGGACAAAACAT 58.084 33.333 0.00 0.00 0.00 2.71
2532 3690 5.925969 GGACAAAACATAAAACTGGACATGG 59.074 40.000 0.00 0.00 0.00 3.66
2533 3691 5.852827 ACAAAACATAAAACTGGACATGGG 58.147 37.500 0.00 0.00 0.00 4.00
2534 3692 5.600484 ACAAAACATAAAACTGGACATGGGA 59.400 36.000 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 52 4.379243 CTGGCTCGTCCTGGCGTT 62.379 66.667 9.66 0.00 35.26 4.84
831 1456 4.222847 GGCGAACCCTAGCTCCCG 62.223 72.222 0.00 0.00 0.00 5.14
885 1510 2.841442 AGAAGGAGAACCGTTTGAGG 57.159 50.000 0.00 0.00 41.83 3.86
886 1511 4.022242 TCACTAGAAGGAGAACCGTTTGAG 60.022 45.833 0.00 0.00 41.83 3.02
887 1512 3.893200 TCACTAGAAGGAGAACCGTTTGA 59.107 43.478 0.00 0.00 41.83 2.69
888 1513 4.252971 TCACTAGAAGGAGAACCGTTTG 57.747 45.455 0.00 0.00 41.83 2.93
889 1514 4.822026 CATCACTAGAAGGAGAACCGTTT 58.178 43.478 0.00 0.00 41.83 3.60
890 1515 3.368531 GCATCACTAGAAGGAGAACCGTT 60.369 47.826 0.00 0.00 41.83 4.44
891 1516 2.166664 GCATCACTAGAAGGAGAACCGT 59.833 50.000 0.00 0.00 41.83 4.83
892 1517 2.796383 CGCATCACTAGAAGGAGAACCG 60.796 54.545 0.00 0.00 41.83 4.44
893 1518 2.482142 CCGCATCACTAGAAGGAGAACC 60.482 54.545 0.00 0.00 0.00 3.62
894 1519 2.815478 CCGCATCACTAGAAGGAGAAC 58.185 52.381 0.00 0.00 0.00 3.01
895 1520 1.137086 GCCGCATCACTAGAAGGAGAA 59.863 52.381 0.00 0.00 0.00 2.87
896 1521 0.747255 GCCGCATCACTAGAAGGAGA 59.253 55.000 0.00 0.00 0.00 3.71
897 1522 0.461548 TGCCGCATCACTAGAAGGAG 59.538 55.000 0.00 0.00 0.00 3.69
898 1523 0.461548 CTGCCGCATCACTAGAAGGA 59.538 55.000 0.00 0.00 0.00 3.36
899 1524 0.176680 ACTGCCGCATCACTAGAAGG 59.823 55.000 0.00 0.00 0.00 3.46
900 1525 2.015736 AACTGCCGCATCACTAGAAG 57.984 50.000 0.00 0.00 0.00 2.85
901 1526 2.418197 GGTAACTGCCGCATCACTAGAA 60.418 50.000 0.00 0.00 0.00 2.10
902 1527 1.136305 GGTAACTGCCGCATCACTAGA 59.864 52.381 0.00 0.00 0.00 2.43
903 1528 1.134818 TGGTAACTGCCGCATCACTAG 60.135 52.381 0.00 0.00 37.61 2.57
904 1529 0.899019 TGGTAACTGCCGCATCACTA 59.101 50.000 0.00 0.00 37.61 2.74
905 1530 0.036164 TTGGTAACTGCCGCATCACT 59.964 50.000 0.00 0.00 37.61 3.41
906 1531 0.878416 TTTGGTAACTGCCGCATCAC 59.122 50.000 0.00 0.00 37.61 3.06
907 1532 1.610363 TTTTGGTAACTGCCGCATCA 58.390 45.000 0.00 0.00 37.61 3.07
908 1533 2.715737 TTTTTGGTAACTGCCGCATC 57.284 45.000 0.00 0.00 37.61 3.91
927 1552 2.963101 GCCAGTTTACAGGGTCCTTTTT 59.037 45.455 0.00 0.00 0.00 1.94
928 1553 2.177016 AGCCAGTTTACAGGGTCCTTTT 59.823 45.455 0.00 0.00 0.00 2.27
932 1557 3.279434 CATTAGCCAGTTTACAGGGTCC 58.721 50.000 0.00 0.00 34.94 4.46
936 1561 2.351726 GCGACATTAGCCAGTTTACAGG 59.648 50.000 0.00 0.00 0.00 4.00
937 1562 3.658351 GCGACATTAGCCAGTTTACAG 57.342 47.619 0.00 0.00 0.00 2.74
984 1611 2.756760 CACCATTGCCAGCTTATCAACT 59.243 45.455 0.00 0.00 0.00 3.16
1051 1678 4.322080 TCAGCTGAATAACCGTATCCAG 57.678 45.455 15.67 0.00 0.00 3.86
1112 1739 5.048154 TGAATGAAGAAAATCATCACCGCAA 60.048 36.000 0.00 0.00 39.08 4.85
1212 1840 0.179124 TTTGGCTTTGGCACACGTTC 60.179 50.000 0.00 0.00 39.29 3.95
1213 1841 0.459411 GTTTGGCTTTGGCACACGTT 60.459 50.000 0.00 0.00 39.29 3.99
1214 1842 1.140804 GTTTGGCTTTGGCACACGT 59.859 52.632 0.00 0.00 39.29 4.49
1217 1851 3.133721 ACAAATAGTTTGGCTTTGGCACA 59.866 39.130 7.28 0.00 44.81 4.57
1219 1853 3.494048 CCACAAATAGTTTGGCTTTGGCA 60.494 43.478 7.28 0.00 44.81 4.92
1233 1867 0.945099 TGTTTGCGACGCCACAAATA 59.055 45.000 18.69 6.92 38.01 1.40
1253 1887 1.403814 GACATCTGGTCAGATCCCGA 58.596 55.000 10.24 0.00 45.78 5.14
1275 1909 9.334947 CAACACTATTGTCTTCAGATGGATATT 57.665 33.333 0.00 0.00 33.55 1.28
1282 1916 6.825721 GGAATCCAACACTATTGTCTTCAGAT 59.174 38.462 0.00 0.00 33.55 2.90
1310 2299 1.081892 CTTCAGACTTGATGCCACGG 58.918 55.000 0.00 0.00 32.27 4.94
1386 2375 2.943033 CCTTATTGTAGGAGCAAACCCG 59.057 50.000 0.00 0.00 37.50 5.28
1390 2379 7.122650 CCAAGAATTCCTTATTGTAGGAGCAAA 59.877 37.037 0.65 0.00 44.82 3.68
1398 2387 5.590259 GCTCTGCCAAGAATTCCTTATTGTA 59.410 40.000 0.65 0.00 32.82 2.41
1399 2388 4.400567 GCTCTGCCAAGAATTCCTTATTGT 59.599 41.667 0.65 0.00 32.82 2.71
1462 2451 3.374058 AGTTGTAAAATGAATCCGAGCCG 59.626 43.478 0.00 0.00 0.00 5.52
1558 2547 0.179113 ACCAAGTGGCAAGCGTTTTG 60.179 50.000 0.00 0.00 39.32 2.44
1563 2552 1.950630 GCAAACCAAGTGGCAAGCG 60.951 57.895 0.00 0.00 39.32 4.68
1581 2570 3.914364 GCAAAAGCAACTCGTAAATGGAG 59.086 43.478 0.00 0.00 37.54 3.86
1588 2577 3.682858 GTGATAGGCAAAAGCAACTCGTA 59.317 43.478 0.00 0.00 0.00 3.43
1599 2588 5.402054 AATGGGATAAGGTGATAGGCAAA 57.598 39.130 0.00 0.00 0.00 3.68
1609 2598 5.843969 ACCAAACAGAAAAATGGGATAAGGT 59.156 36.000 0.00 0.00 37.26 3.50
1610 2599 6.358974 ACCAAACAGAAAAATGGGATAAGG 57.641 37.500 0.00 0.00 37.26 2.69
1641 2634 7.824779 AGAATCTAAAATCACCACAACTAGTCC 59.175 37.037 0.00 0.00 0.00 3.85
1688 2681 7.989741 CAGATAGGTTCTTTAATGTCACCAGAT 59.010 37.037 12.07 7.10 29.93 2.90
1689 2682 7.038302 ACAGATAGGTTCTTTAATGTCACCAGA 60.038 37.037 12.07 3.96 29.93 3.86
1690 2683 7.065085 CACAGATAGGTTCTTTAATGTCACCAG 59.935 40.741 12.07 0.00 29.93 4.00
1691 2684 6.878923 CACAGATAGGTTCTTTAATGTCACCA 59.121 38.462 12.07 0.00 29.93 4.17
1692 2685 6.879458 ACACAGATAGGTTCTTTAATGTCACC 59.121 38.462 5.05 5.05 29.93 4.02
1693 2686 7.907214 ACACAGATAGGTTCTTTAATGTCAC 57.093 36.000 0.00 0.00 29.93 3.67
1694 2687 8.783093 CAAACACAGATAGGTTCTTTAATGTCA 58.217 33.333 0.00 0.00 29.93 3.58
1695 2688 8.784043 ACAAACACAGATAGGTTCTTTAATGTC 58.216 33.333 0.00 0.00 29.93 3.06
1696 2689 8.691661 ACAAACACAGATAGGTTCTTTAATGT 57.308 30.769 0.00 0.00 29.93 2.71
1697 2690 9.965824 AAACAAACACAGATAGGTTCTTTAATG 57.034 29.630 0.00 0.00 29.93 1.90
1736 2729 9.926158 CTGATAAGCAAGAGTTCTCACATATAT 57.074 33.333 2.64 0.00 0.00 0.86
1737 2730 7.869937 GCTGATAAGCAAGAGTTCTCACATATA 59.130 37.037 0.00 0.00 34.41 0.86
1738 2731 6.705381 GCTGATAAGCAAGAGTTCTCACATAT 59.295 38.462 0.00 0.00 34.41 1.78
1756 2749 8.325787 TCAAAACACTAAAGGATAGGCTGATAA 58.674 33.333 0.00 0.00 0.00 1.75
1787 2782 3.309410 AGCAATTTTCGCAAAAACCACAG 59.691 39.130 0.00 0.00 37.20 3.66
1792 2787 5.327891 TCCAAAAGCAATTTTCGCAAAAAC 58.672 33.333 0.00 0.00 37.20 2.43
1799 2794 3.976169 TGGTCTCCAAAAGCAATTTTCG 58.024 40.909 0.00 0.00 0.00 3.46
1800 2795 4.212004 GCTTGGTCTCCAAAAGCAATTTTC 59.788 41.667 7.37 0.00 43.44 2.29
1801 2796 4.129380 GCTTGGTCTCCAAAAGCAATTTT 58.871 39.130 7.37 0.00 43.44 1.82
1802 2797 3.389002 AGCTTGGTCTCCAAAAGCAATTT 59.611 39.130 12.86 0.00 43.44 1.82
1803 2798 2.967887 AGCTTGGTCTCCAAAAGCAATT 59.032 40.909 12.86 0.00 43.44 2.32
1804 2799 2.560105 GAGCTTGGTCTCCAAAAGCAAT 59.440 45.455 12.86 0.00 43.44 3.56
1805 2800 1.956477 GAGCTTGGTCTCCAAAAGCAA 59.044 47.619 12.86 0.00 43.44 3.91
1806 2801 1.609208 GAGCTTGGTCTCCAAAAGCA 58.391 50.000 12.86 0.00 43.44 3.91
1814 2809 2.016096 GCCTCAATGGAGCTTGGTCTC 61.016 57.143 0.00 0.00 39.96 3.36
1815 2810 0.034670 GCCTCAATGGAGCTTGGTCT 60.035 55.000 0.00 0.00 39.96 3.85
1816 2811 1.034292 GGCCTCAATGGAGCTTGGTC 61.034 60.000 0.00 0.00 39.96 4.02
1817 2812 1.000396 GGCCTCAATGGAGCTTGGT 60.000 57.895 0.00 0.00 39.96 3.67
1818 2813 0.324091 AAGGCCTCAATGGAGCTTGG 60.324 55.000 5.23 0.00 39.96 3.61
1819 2814 1.101331 GAAGGCCTCAATGGAGCTTG 58.899 55.000 5.23 0.00 39.96 4.01
1820 2815 0.700564 TGAAGGCCTCAATGGAGCTT 59.299 50.000 5.23 0.00 39.96 3.74
1821 2816 0.924823 ATGAAGGCCTCAATGGAGCT 59.075 50.000 5.23 0.00 39.96 4.09
1822 2817 1.772836 AATGAAGGCCTCAATGGAGC 58.227 50.000 5.23 0.00 39.96 4.70
1823 2818 2.159142 GCAAATGAAGGCCTCAATGGAG 60.159 50.000 5.23 0.00 37.67 3.86
1824 2819 1.826720 GCAAATGAAGGCCTCAATGGA 59.173 47.619 5.23 0.00 37.67 3.41
1825 2820 1.551430 TGCAAATGAAGGCCTCAATGG 59.449 47.619 5.23 0.00 37.67 3.16
1826 2821 3.322211 TTGCAAATGAAGGCCTCAATG 57.678 42.857 5.23 10.68 37.67 2.82
1827 2822 4.563140 AATTGCAAATGAAGGCCTCAAT 57.437 36.364 5.23 6.76 37.67 2.57
1828 2823 4.354893 AAATTGCAAATGAAGGCCTCAA 57.645 36.364 5.23 4.15 37.67 3.02
1829 2824 4.354893 AAAATTGCAAATGAAGGCCTCA 57.645 36.364 5.23 6.53 38.81 3.86
1830 2825 6.799926 TTAAAAATTGCAAATGAAGGCCTC 57.200 33.333 5.23 0.00 0.00 4.70
1831 2826 7.579761 TTTTAAAAATTGCAAATGAAGGCCT 57.420 28.000 1.71 0.00 0.00 5.19
1832 2827 6.363088 GCTTTTAAAAATTGCAAATGAAGGCC 59.637 34.615 1.71 0.00 0.00 5.19
1833 2828 6.363088 GGCTTTTAAAAATTGCAAATGAAGGC 59.637 34.615 1.71 9.55 0.00 4.35
1834 2829 7.424001 TGGCTTTTAAAAATTGCAAATGAAGG 58.576 30.769 1.71 0.00 0.00 3.46
1883 2878 9.559732 CCTCCATGTATATCTGTATTTGTTTCA 57.440 33.333 0.00 0.00 0.00 2.69
1884 2879 8.507249 GCCTCCATGTATATCTGTATTTGTTTC 58.493 37.037 0.00 0.00 0.00 2.78
1885 2880 7.998383 TGCCTCCATGTATATCTGTATTTGTTT 59.002 33.333 0.00 0.00 0.00 2.83
1886 2881 7.517320 TGCCTCCATGTATATCTGTATTTGTT 58.483 34.615 0.00 0.00 0.00 2.83
1887 2882 7.078249 TGCCTCCATGTATATCTGTATTTGT 57.922 36.000 0.00 0.00 0.00 2.83
1888 2883 9.671279 TTATGCCTCCATGTATATCTGTATTTG 57.329 33.333 0.00 0.00 32.85 2.32
1889 2884 9.672673 GTTATGCCTCCATGTATATCTGTATTT 57.327 33.333 0.00 0.00 32.85 1.40
1890 2885 8.825774 TGTTATGCCTCCATGTATATCTGTATT 58.174 33.333 0.00 0.00 32.85 1.89
1891 2886 8.260818 GTGTTATGCCTCCATGTATATCTGTAT 58.739 37.037 0.00 0.00 32.85 2.29
1892 2887 7.310423 GGTGTTATGCCTCCATGTATATCTGTA 60.310 40.741 0.00 0.00 32.85 2.74
1893 2888 6.467677 GTGTTATGCCTCCATGTATATCTGT 58.532 40.000 0.00 0.00 32.85 3.41
1894 2889 5.877012 GGTGTTATGCCTCCATGTATATCTG 59.123 44.000 0.00 0.00 32.85 2.90
1895 2890 5.045578 GGGTGTTATGCCTCCATGTATATCT 60.046 44.000 0.00 0.00 32.85 1.98
1896 2891 5.186198 GGGTGTTATGCCTCCATGTATATC 58.814 45.833 0.00 0.00 32.85 1.63
1897 2892 4.601420 TGGGTGTTATGCCTCCATGTATAT 59.399 41.667 0.00 0.00 32.85 0.86
1898 2893 3.977326 TGGGTGTTATGCCTCCATGTATA 59.023 43.478 0.00 0.00 32.85 1.47
1899 2894 2.782925 TGGGTGTTATGCCTCCATGTAT 59.217 45.455 0.00 0.00 32.85 2.29
1900 2895 2.200955 TGGGTGTTATGCCTCCATGTA 58.799 47.619 0.00 0.00 32.85 2.29
1901 2896 0.998928 TGGGTGTTATGCCTCCATGT 59.001 50.000 0.00 0.00 32.85 3.21
1902 2897 1.958579 CATGGGTGTTATGCCTCCATG 59.041 52.381 6.30 6.30 45.64 3.66
1903 2898 1.570501 ACATGGGTGTTATGCCTCCAT 59.429 47.619 0.00 0.00 38.61 3.41
1904 2899 0.998928 ACATGGGTGTTATGCCTCCA 59.001 50.000 0.00 0.00 34.01 3.86
1905 2900 1.392589 CACATGGGTGTTATGCCTCC 58.607 55.000 0.00 0.00 40.24 4.30
1916 2911 4.283212 CCCTGAAAATTTACACACATGGGT 59.717 41.667 0.00 0.00 34.93 4.51
1917 2912 4.526262 TCCCTGAAAATTTACACACATGGG 59.474 41.667 0.00 0.00 0.00 4.00
1918 2913 5.476599 TCTCCCTGAAAATTTACACACATGG 59.523 40.000 0.00 0.00 0.00 3.66
1919 2914 6.573664 TCTCCCTGAAAATTTACACACATG 57.426 37.500 0.00 0.00 0.00 3.21
1920 2915 7.595819 TTTCTCCCTGAAAATTTACACACAT 57.404 32.000 0.00 0.00 41.23 3.21
1921 2916 7.595819 ATTTCTCCCTGAAAATTTACACACA 57.404 32.000 0.00 0.00 46.32 3.72
1922 2917 7.749126 CGTATTTCTCCCTGAAAATTTACACAC 59.251 37.037 0.00 0.00 46.32 3.82
1923 2918 7.446013 ACGTATTTCTCCCTGAAAATTTACACA 59.554 33.333 0.00 0.00 46.32 3.72
1924 2919 7.813645 ACGTATTTCTCCCTGAAAATTTACAC 58.186 34.615 0.00 0.00 46.32 2.90
1925 2920 7.989416 ACGTATTTCTCCCTGAAAATTTACA 57.011 32.000 0.00 0.00 46.32 2.41
1926 2921 8.508875 TCAACGTATTTCTCCCTGAAAATTTAC 58.491 33.333 0.00 0.00 46.32 2.01
1927 2922 8.624367 TCAACGTATTTCTCCCTGAAAATTTA 57.376 30.769 0.00 0.00 46.32 1.40
1928 2923 7.519032 TCAACGTATTTCTCCCTGAAAATTT 57.481 32.000 0.00 0.00 46.32 1.82
1929 2924 7.519032 TTCAACGTATTTCTCCCTGAAAATT 57.481 32.000 0.00 0.00 46.32 1.82
1930 2925 7.519032 TTTCAACGTATTTCTCCCTGAAAAT 57.481 32.000 4.30 0.00 46.32 1.82
1931 2926 6.945938 TTTCAACGTATTTCTCCCTGAAAA 57.054 33.333 4.30 0.00 46.32 2.29
1933 2928 6.234920 TCATTTCAACGTATTTCTCCCTGAA 58.765 36.000 0.00 0.00 0.00 3.02
1934 2929 5.800296 TCATTTCAACGTATTTCTCCCTGA 58.200 37.500 0.00 0.00 0.00 3.86
1935 2930 5.065218 CCTCATTTCAACGTATTTCTCCCTG 59.935 44.000 0.00 0.00 0.00 4.45
1936 2931 5.186198 CCTCATTTCAACGTATTTCTCCCT 58.814 41.667 0.00 0.00 0.00 4.20
1937 2932 4.335594 CCCTCATTTCAACGTATTTCTCCC 59.664 45.833 0.00 0.00 0.00 4.30
1938 2933 4.201920 GCCCTCATTTCAACGTATTTCTCC 60.202 45.833 0.00 0.00 0.00 3.71
1939 2934 4.494199 CGCCCTCATTTCAACGTATTTCTC 60.494 45.833 0.00 0.00 0.00 2.87
1940 2935 3.374058 CGCCCTCATTTCAACGTATTTCT 59.626 43.478 0.00 0.00 0.00 2.52
1941 2936 3.126343 ACGCCCTCATTTCAACGTATTTC 59.874 43.478 0.00 0.00 31.03 2.17
1942 2937 3.078837 ACGCCCTCATTTCAACGTATTT 58.921 40.909 0.00 0.00 31.03 1.40
1943 2938 2.706890 ACGCCCTCATTTCAACGTATT 58.293 42.857 0.00 0.00 31.03 1.89
1944 2939 2.396590 ACGCCCTCATTTCAACGTAT 57.603 45.000 0.00 0.00 31.03 3.06
1945 2940 2.172851 AACGCCCTCATTTCAACGTA 57.827 45.000 0.00 0.00 32.76 3.57
1946 2941 1.265905 GAAACGCCCTCATTTCAACGT 59.734 47.619 0.00 0.00 35.34 3.99
1947 2942 1.265635 TGAAACGCCCTCATTTCAACG 59.734 47.619 0.00 0.00 40.85 4.10
1948 2943 3.308530 CTTGAAACGCCCTCATTTCAAC 58.691 45.455 7.80 0.00 45.35 3.18
1950 2945 1.885887 CCTTGAAACGCCCTCATTTCA 59.114 47.619 0.00 0.00 41.80 2.69
1951 2946 1.886542 ACCTTGAAACGCCCTCATTTC 59.113 47.619 0.00 0.00 35.73 2.17
1952 2947 1.995376 ACCTTGAAACGCCCTCATTT 58.005 45.000 0.00 0.00 0.00 2.32
1953 2948 2.871096 TACCTTGAAACGCCCTCATT 57.129 45.000 0.00 0.00 0.00 2.57
1954 2949 3.366052 AATACCTTGAAACGCCCTCAT 57.634 42.857 0.00 0.00 0.00 2.90
1955 2950 2.871096 AATACCTTGAAACGCCCTCA 57.129 45.000 0.00 0.00 0.00 3.86
1956 2951 3.078837 TGAAATACCTTGAAACGCCCTC 58.921 45.455 0.00 0.00 0.00 4.30
1957 2952 3.149005 TGAAATACCTTGAAACGCCCT 57.851 42.857 0.00 0.00 0.00 5.19
1958 2953 3.181490 GGATGAAATACCTTGAAACGCCC 60.181 47.826 0.00 0.00 0.00 6.13
1959 2954 3.694566 AGGATGAAATACCTTGAAACGCC 59.305 43.478 0.00 0.00 31.95 5.68
1960 2955 4.394920 TCAGGATGAAATACCTTGAAACGC 59.605 41.667 0.00 0.00 45.97 4.84
1976 2971 6.072563 TGTGATGTGTGTAAACATTCAGGATG 60.073 38.462 2.72 0.00 40.87 3.51
1977 2972 6.003326 TGTGATGTGTGTAAACATTCAGGAT 58.997 36.000 2.72 0.00 40.87 3.24
1978 2973 5.372373 TGTGATGTGTGTAAACATTCAGGA 58.628 37.500 2.72 0.00 40.87 3.86
1979 2974 5.687770 TGTGATGTGTGTAAACATTCAGG 57.312 39.130 2.72 0.00 40.87 3.86
1980 2975 6.149973 AGGATGTGATGTGTGTAAACATTCAG 59.850 38.462 2.72 0.00 40.87 3.02
1981 2976 6.003326 AGGATGTGATGTGTGTAAACATTCA 58.997 36.000 0.00 0.00 40.87 2.57
1982 2977 6.500684 AGGATGTGATGTGTGTAAACATTC 57.499 37.500 0.00 0.00 40.87 2.67
1983 2978 6.265196 ACAAGGATGTGATGTGTGTAAACATT 59.735 34.615 0.00 0.00 36.49 2.71
1984 2979 5.769662 ACAAGGATGTGATGTGTGTAAACAT 59.230 36.000 0.00 0.00 38.69 2.71
1985 2980 5.129634 ACAAGGATGTGATGTGTGTAAACA 58.870 37.500 0.00 0.00 38.69 2.83
1986 2981 5.689383 ACAAGGATGTGATGTGTGTAAAC 57.311 39.130 0.00 0.00 38.69 2.01
1987 2982 8.318412 AGTATACAAGGATGTGATGTGTGTAAA 58.682 33.333 5.50 0.00 40.84 2.01
1988 2983 7.847096 AGTATACAAGGATGTGATGTGTGTAA 58.153 34.615 5.50 0.00 40.84 2.41
1989 2984 7.418337 AGTATACAAGGATGTGATGTGTGTA 57.582 36.000 5.50 0.00 40.84 2.90
1990 2985 6.299805 AGTATACAAGGATGTGATGTGTGT 57.700 37.500 5.50 0.00 40.84 3.72
1991 2986 6.595326 ACAAGTATACAAGGATGTGATGTGTG 59.405 38.462 5.50 0.00 40.84 3.82
1992 2987 6.711277 ACAAGTATACAAGGATGTGATGTGT 58.289 36.000 5.50 0.00 40.84 3.72
1993 2988 8.893219 ATACAAGTATACAAGGATGTGATGTG 57.107 34.615 5.50 0.00 40.84 3.21
2025 3020 9.598517 ACTTTTCAGTTTCATAAAAATCTGCAA 57.401 25.926 0.00 0.00 0.00 4.08
2026 3021 9.598517 AACTTTTCAGTTTCATAAAAATCTGCA 57.401 25.926 0.00 0.00 40.66 4.41
2039 3034 9.265938 GCTTCAAAATTTGAACTTTTCAGTTTC 57.734 29.630 16.28 0.00 43.79 2.78
2040 3035 9.002600 AGCTTCAAAATTTGAACTTTTCAGTTT 57.997 25.926 16.28 0.00 43.79 2.66
2041 3036 8.445493 CAGCTTCAAAATTTGAACTTTTCAGTT 58.555 29.630 16.28 1.57 46.64 3.16
2042 3037 7.818930 TCAGCTTCAAAATTTGAACTTTTCAGT 59.181 29.630 16.28 0.00 44.21 3.41
2043 3038 8.188531 TCAGCTTCAAAATTTGAACTTTTCAG 57.811 30.769 16.28 6.95 44.21 3.02
2044 3039 7.201548 GCTCAGCTTCAAAATTTGAACTTTTCA 60.202 33.333 16.28 0.00 44.21 2.69
2045 3040 7.010830 AGCTCAGCTTCAAAATTTGAACTTTTC 59.989 33.333 16.28 9.54 44.21 2.29
2046 3041 6.820152 AGCTCAGCTTCAAAATTTGAACTTTT 59.180 30.769 16.28 1.26 44.21 2.27
2047 3042 6.343703 AGCTCAGCTTCAAAATTTGAACTTT 58.656 32.000 16.28 3.48 44.21 2.66
2048 3043 5.910614 AGCTCAGCTTCAAAATTTGAACTT 58.089 33.333 16.28 5.74 44.21 2.66
2049 3044 5.508657 GGAGCTCAGCTTCAAAATTTGAACT 60.509 40.000 16.28 14.75 44.21 3.01
2050 3045 4.683320 GGAGCTCAGCTTCAAAATTTGAAC 59.317 41.667 16.28 13.04 44.21 3.18
2051 3046 4.341806 TGGAGCTCAGCTTCAAAATTTGAA 59.658 37.500 18.68 18.68 41.71 2.69
2052 3047 3.890756 TGGAGCTCAGCTTCAAAATTTGA 59.109 39.130 17.19 4.03 41.71 2.69
2053 3048 4.247267 TGGAGCTCAGCTTCAAAATTTG 57.753 40.909 17.19 0.00 41.71 2.32
2060 3055 1.542915 GCATTTTGGAGCTCAGCTTCA 59.457 47.619 17.19 2.37 43.12 3.02
2061 3056 1.135170 GGCATTTTGGAGCTCAGCTTC 60.135 52.381 17.19 0.00 39.88 3.86
2062 3057 0.893447 GGCATTTTGGAGCTCAGCTT 59.107 50.000 17.19 0.00 39.88 3.74
2063 3058 0.969409 GGGCATTTTGGAGCTCAGCT 60.969 55.000 17.19 0.00 43.88 4.24
2064 3059 1.514553 GGGCATTTTGGAGCTCAGC 59.485 57.895 17.19 8.79 0.00 4.26
2065 3060 0.612732 TGGGGCATTTTGGAGCTCAG 60.613 55.000 17.19 0.00 31.24 3.35
2066 3061 0.899717 GTGGGGCATTTTGGAGCTCA 60.900 55.000 17.19 0.00 31.24 4.26
2067 3062 0.613012 AGTGGGGCATTTTGGAGCTC 60.613 55.000 4.71 4.71 0.00 4.09
2068 3063 0.613012 GAGTGGGGCATTTTGGAGCT 60.613 55.000 0.00 0.00 0.00 4.09
2069 3064 0.613012 AGAGTGGGGCATTTTGGAGC 60.613 55.000 0.00 0.00 0.00 4.70
2070 3065 1.928868 AAGAGTGGGGCATTTTGGAG 58.071 50.000 0.00 0.00 0.00 3.86
2071 3066 3.181423 ACTTAAGAGTGGGGCATTTTGGA 60.181 43.478 10.09 0.00 33.99 3.53
2072 3067 3.165071 ACTTAAGAGTGGGGCATTTTGG 58.835 45.455 10.09 0.00 33.99 3.28
2073 3068 4.871933 AACTTAAGAGTGGGGCATTTTG 57.128 40.909 10.09 0.00 35.91 2.44
2074 3069 8.658840 TTATAAACTTAAGAGTGGGGCATTTT 57.341 30.769 10.09 0.00 35.91 1.82
2075 3070 8.838649 ATTATAAACTTAAGAGTGGGGCATTT 57.161 30.769 10.09 0.00 35.91 2.32
2077 3072 9.740710 GATATTATAAACTTAAGAGTGGGGCAT 57.259 33.333 10.09 0.00 35.91 4.40
2078 3073 8.161425 GGATATTATAAACTTAAGAGTGGGGCA 58.839 37.037 10.09 0.00 35.91 5.36
2079 3074 8.383947 AGGATATTATAAACTTAAGAGTGGGGC 58.616 37.037 10.09 0.00 35.91 5.80
2080 3075 9.726438 CAGGATATTATAAACTTAAGAGTGGGG 57.274 37.037 10.09 0.00 35.91 4.96
2081 3076 9.726438 CCAGGATATTATAAACTTAAGAGTGGG 57.274 37.037 10.09 0.00 35.91 4.61
2100 3095 3.245839 TGGTGTCACTAGGTTCCAGGATA 60.246 47.826 2.35 0.00 0.00 2.59
2113 3108 4.021368 GGTAAGTACTCATGTGGTGTCACT 60.021 45.833 2.35 0.00 43.94 3.41
2140 3259 2.101700 CGGACCAGTACTCCGGTAC 58.898 63.158 12.90 8.97 45.90 3.34
2146 3265 2.713877 AGAGAAGTCGGACCAGTACTC 58.286 52.381 4.14 6.96 0.00 2.59
2158 3277 3.991121 CCTCGAAACCTTGAAGAGAAGTC 59.009 47.826 0.00 0.00 0.00 3.01
2172 3312 0.736053 TGTGCAAACCACCTCGAAAC 59.264 50.000 0.00 0.00 44.01 2.78
2176 3316 1.654220 CCTTGTGCAAACCACCTCG 59.346 57.895 0.00 0.00 44.01 4.63
2181 3321 1.133945 TCACTAGCCTTGTGCAAACCA 60.134 47.619 1.14 0.00 44.83 3.67
2201 3341 4.339247 CCTTTCAATCACTTCACCAACTGT 59.661 41.667 0.00 0.00 0.00 3.55
2228 3368 6.899114 TCGAAAAATCTTAGCTCCAAAGAAC 58.101 36.000 1.64 0.00 36.60 3.01
2238 3378 6.489675 TCAGCAATGATCGAAAAATCTTAGC 58.510 36.000 0.00 0.00 0.00 3.09
2247 3387 3.257469 AGCTCTCAGCAATGATCGAAA 57.743 42.857 0.00 0.00 45.56 3.46
2263 3403 3.029483 ACTGGTACCTAGGGTTAGCTC 57.971 52.381 14.81 0.00 37.09 4.09
2286 3426 5.838531 ACTACTTCTGCTCTACCATACAC 57.161 43.478 0.00 0.00 0.00 2.90
2287 3427 7.445707 CAGATACTACTTCTGCTCTACCATACA 59.554 40.741 0.00 0.00 34.68 2.29
2288 3428 7.446013 ACAGATACTACTTCTGCTCTACCATAC 59.554 40.741 0.78 0.00 43.57 2.39
2289 3429 7.519057 ACAGATACTACTTCTGCTCTACCATA 58.481 38.462 0.78 0.00 43.57 2.74
2290 3430 6.369629 ACAGATACTACTTCTGCTCTACCAT 58.630 40.000 0.78 0.00 43.57 3.55
2293 3433 6.708949 AGCTACAGATACTACTTCTGCTCTAC 59.291 42.308 0.78 0.00 43.57 2.59
2294 3434 6.708502 CAGCTACAGATACTACTTCTGCTCTA 59.291 42.308 0.78 0.00 43.57 2.43
2295 3435 5.530915 CAGCTACAGATACTACTTCTGCTCT 59.469 44.000 0.78 0.00 43.57 4.09
2296 3436 5.757886 CAGCTACAGATACTACTTCTGCTC 58.242 45.833 0.78 0.00 43.57 4.26
2331 3480 5.940470 CCACTTCTTTTGCCTATCACTACTT 59.060 40.000 0.00 0.00 0.00 2.24
2333 3482 4.095036 GCCACTTCTTTTGCCTATCACTAC 59.905 45.833 0.00 0.00 0.00 2.73
2338 3487 4.519540 TTTGCCACTTCTTTTGCCTATC 57.480 40.909 0.00 0.00 0.00 2.08
2369 3518 7.173907 CAGTCTTTTGAAAGCTAGATTGAAGGA 59.826 37.037 0.00 0.00 35.99 3.36
2386 3535 1.736681 GCTAGCAGGAGCAGTCTTTTG 59.263 52.381 10.63 0.00 45.49 2.44
2388 3537 1.274712 AGCTAGCAGGAGCAGTCTTT 58.725 50.000 18.83 0.00 45.43 2.52
2396 3545 6.107901 AGGATTATAACAAGCTAGCAGGAG 57.892 41.667 18.83 5.85 0.00 3.69
2398 3547 6.759272 TGTAGGATTATAACAAGCTAGCAGG 58.241 40.000 18.83 10.84 0.00 4.85
2399 3548 8.839310 AATGTAGGATTATAACAAGCTAGCAG 57.161 34.615 18.83 11.61 0.00 4.24
2400 3549 9.056005 CAAATGTAGGATTATAACAAGCTAGCA 57.944 33.333 18.83 0.00 0.00 3.49
2401 3550 8.507249 CCAAATGTAGGATTATAACAAGCTAGC 58.493 37.037 6.62 6.62 0.00 3.42
2404 3553 9.125026 CTTCCAAATGTAGGATTATAACAAGCT 57.875 33.333 0.00 0.00 34.56 3.74
2409 3567 7.862873 GCTTGCTTCCAAATGTAGGATTATAAC 59.137 37.037 0.00 0.00 34.56 1.89
2416 3574 2.083774 CGCTTGCTTCCAAATGTAGGA 58.916 47.619 0.00 0.00 0.00 2.94
2422 3580 1.259840 ATGGGCGCTTGCTTCCAAAT 61.260 50.000 7.64 0.00 34.26 2.32
2427 3585 1.094785 TAGAAATGGGCGCTTGCTTC 58.905 50.000 7.64 6.05 39.13 3.86
2428 3586 1.406539 CATAGAAATGGGCGCTTGCTT 59.593 47.619 7.64 0.00 39.13 3.91
2429 3587 1.027357 CATAGAAATGGGCGCTTGCT 58.973 50.000 7.64 0.00 39.13 3.91
2484 3642 6.127703 CCTTTCATTTCAGCATCATGTTCTCT 60.128 38.462 0.00 0.00 0.00 3.10
2488 3646 5.244402 TGTCCTTTCATTTCAGCATCATGTT 59.756 36.000 0.00 0.00 0.00 2.71
2493 3651 5.984926 TGTTTTGTCCTTTCATTTCAGCATC 59.015 36.000 0.00 0.00 0.00 3.91
2509 3667 5.925969 CCCATGTCCAGTTTTATGTTTTGTC 59.074 40.000 0.00 0.00 0.00 3.18
2518 3676 6.877668 TGTACTATCCCATGTCCAGTTTTA 57.122 37.500 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.