AutoCloner

Multiple sequence alignment - TraesCS5D01G036100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G036100	chr5D	100.000	2829	0	0	1	2829	35479545	35476717	0.000000e+00	5225.0
1	TraesCS5D01G036100	chr3D	91.342	2668	190	16	193	2829	17288875	17286218	0.000000e+00	3609.0
2	TraesCS5D01G036100	chr3D	91.064	2585	188	18	188	2739	17324019	17321445	0.000000e+00	3454.0
3	TraesCS5D01G036100	chr3D	89.655	841	59	12	2016	2829	17238611	17237772	0.000000e+00	1046.0
4	TraesCS5D01G036100	chr3D	91.358	162	11	1	571	729	87926000	87926161	4.750000e-53	219.0
5	TraesCS5D01G036100	chr3D	89.706	68	7	0	2762	2829	17321333	17321266	1.400000e-13	87.9
6	TraesCS5D01G036100	chr3B	90.576	2674	206	18	188	2829	24834638	24831979	0.000000e+00	3500.0
7	TraesCS5D01G036100	chrUn	92.902	2212	148	5	43	2251	334202360	334200155	0.000000e+00	3206.0
8	TraesCS5D01G036100	chrUn	90.978	1851	139	5	1007	2829	324174626	324176476	0.000000e+00	2468.0
9	TraesCS5D01G036100	chrUn	92.340	966	66	3	43	1005	373420307	373419347	0.000000e+00	1367.0
10	TraesCS5D01G036100	chrUn	93.103	58	2	2	2621	2678	324176210	324176265	1.810000e-12	84.2
11	TraesCS5D01G036100	chr2D	90.123	162	13	1	571	729	299891715	299891554	1.030000e-49	207.0
12	TraesCS5D01G036100	chr2D	95.082	61	3	0	206	266	564446653	564446593	2.320000e-16	97.1
13	TraesCS5D01G036100	chr4D	88.757	169	15	2	571	736	34661688	34661521	1.330000e-48	204.0
14	TraesCS5D01G036100	chr4D	87.778	180	15	4	554	729	386984653	386984829	1.330000e-48	204.0
15	TraesCS5D01G036100	chr7A	89.474	76	6	2	1	75	121566959	121567033	8.340000e-16	95.3
16	TraesCS5D01G036100	chr7A	81.188	101	15	4	1	99	101582775	101582677	8.400000e-11	78.7
17	TraesCS5D01G036100	chr1A	88.750	80	5	4	1	77	11737796	11737718	8.340000e-16	95.3
18	TraesCS5D01G036100	chr1A	87.013	77	8	2	1	76	546886947	546886872	5.020000e-13	86.1
19	TraesCS5D01G036100	chr1A	87.013	77	6	4	1	75	187015574	187015648	1.810000e-12	84.2
20	TraesCS5D01G036100	chr1A	94.872	39	2	0	306	344	432514763	432514801	8.460000e-06	62.1
21	TraesCS5D01G036100	chr6D	91.045	67	6	0	200	266	356594218	356594152	1.080000e-14	91.6
22	TraesCS5D01G036100	chr6D	78.125	128	21	6	211	334	153810781	153810657	1.090000e-09	75.0
23	TraesCS5D01G036100	chr5B	88.889	72	8	0	195	266	155715224	155715153	3.880000e-14	89.8
24	TraesCS5D01G036100	chr2A	88.462	78	4	5	3	77	300770463	300770538	3.880000e-14	89.8
25	TraesCS5D01G036100	chr2A	87.013	77	7	3	1	76	630451890	630451816	1.810000e-12	84.2
26	TraesCS5D01G036100	chr1D	86.842	76	8	2	1	75	33870448	33870522	1.810000e-12	84.2
27	TraesCS5D01G036100	chr4B	83.721	86	10	4	6	89	420896138	420896055	8.400000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G036100	chr5D	35476717	35479545	2828	True	5225.00	5225	100.0000	1	2829	1	chr5D.!!$R1	2828
1	TraesCS5D01G036100	chr3D	17286218	17288875	2657	True	3609.00	3609	91.3420	193	2829	1	chr3D.!!$R2	2636
2	TraesCS5D01G036100	chr3D	17321266	17324019	2753	True	1770.95	3454	90.3850	188	2829	2	chr3D.!!$R3	2641
3	TraesCS5D01G036100	chr3D	17237772	17238611	839	True	1046.00	1046	89.6550	2016	2829	1	chr3D.!!$R1	813
4	TraesCS5D01G036100	chr3B	24831979	24834638	2659	True	3500.00	3500	90.5760	188	2829	1	chr3B.!!$R1	2641
5	TraesCS5D01G036100	chrUn	334200155	334202360	2205	True	3206.00	3206	92.9020	43	2251	1	chrUn.!!$R1	2208
6	TraesCS5D01G036100	chrUn	373419347	373420307	960	True	1367.00	1367	92.3400	43	1005	1	chrUn.!!$R2	962
7	TraesCS5D01G036100	chrUn	324174626	324176476	1850	False	1276.10	2468	92.0405	1007	2829	2	chrUn.!!$F1	1822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
38	39	0.179100	CCACGCTACTGCTAGCACAT	60.179	55.000	14.93	7.69	45.22	3.21	F
46	47	1.278127	ACTGCTAGCACATTAACCCGT	59.722	47.619	14.93	3.79	0.00	5.28	F
157	158	2.036475	AGTAATCTGCTCCACGGCTATG	59.964	50.000	0.00	0.00	0.00	2.23	F
1372	1381	0.529992	GGCATCGTACCCACTACAGC	60.530	60.000	0.00	0.00	0.00	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1171	1180	0.181350	CCTACCCCATCACTTCCAGC	59.819	60.000	0.00	0.00	0.00	4.85	R
1276	1285	0.623723	TGAAGGAACATGGGCCTACC	59.376	55.000	4.53	0.00	40.81	3.18	R
1575	1584	2.750637	TCGAGCACGAGGTCCCTC	60.751	66.667	0.88	3.09	43.81	4.30	R
2682	2716	1.734465	CGCCTTCTGATTTGACACCTC	59.266	52.381	0.00	0.00	0.00	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	2.577059	GGCACCACGCTACTGCTA	59.423	61.111	0.00	0.00	41.91	3.49
33	34	1.519455	GGCACCACGCTACTGCTAG	60.519	63.158	0.00	0.00	41.91	3.42
34	35	2.167861	GCACCACGCTACTGCTAGC	61.168	63.158	8.10	8.10	41.97	3.42
35	36	1.215382	CACCACGCTACTGCTAGCA	59.785	57.895	18.22	18.22	45.22	3.49
36	37	1.078759	CACCACGCTACTGCTAGCAC	61.079	60.000	14.93	2.78	45.22	4.40
37	38	1.215382	CCACGCTACTGCTAGCACA	59.785	57.895	14.93	3.52	45.22	4.57
38	39	0.179100	CCACGCTACTGCTAGCACAT	60.179	55.000	14.93	7.69	45.22	3.21
39	40	1.645034	CACGCTACTGCTAGCACATT	58.355	50.000	14.93	3.52	45.22	2.71
40	41	2.481276	CCACGCTACTGCTAGCACATTA	60.481	50.000	14.93	4.60	45.22	1.90
41	42	3.186909	CACGCTACTGCTAGCACATTAA	58.813	45.455	14.93	0.00	45.22	1.40
46	47	1.278127	ACTGCTAGCACATTAACCCGT	59.722	47.619	14.93	3.79	0.00	5.28
65	66	3.429960	CCGTGCTACTACTAGGGTTTTCC	60.430	52.174	0.00	0.00	39.75	3.13
79	80	3.935315	GGTTTTCCCTAGTAGTGTGTCC	58.065	50.000	0.00	0.00	0.00	4.02
145	146	3.618690	AGGAGGTGTCAAGTAATCTGC	57.381	47.619	0.00	0.00	0.00	4.26
152	153	2.271800	GTCAAGTAATCTGCTCCACGG	58.728	52.381	0.00	0.00	0.00	4.94
157	158	2.036475	AGTAATCTGCTCCACGGCTATG	59.964	50.000	0.00	0.00	0.00	2.23
173	174	3.585862	GCTATGGTTTCGTGAGTTCTCA	58.414	45.455	0.00	0.00	0.00	3.27
203	204	6.880484	TGAAGAAGACCAACTGTTTGTACTA	58.120	36.000	0.00	0.00	0.00	1.82
388	391	7.147976	AGATGAAGTGTGCCAACTTTAAATTC	58.852	34.615	2.95	0.00	40.48	2.17
389	392	6.214191	TGAAGTGTGCCAACTTTAAATTCA	57.786	33.333	2.95	0.00	40.48	2.57
488	491	7.867403	GTGTTGTTTCCTCATTTATCATGTTGT	59.133	33.333	0.00	0.00	0.00	3.32
648	654	5.163713	GGAGCAAAATGAGTGAATCTACACC	60.164	44.000	0.00	0.00	41.12	4.16
733	740	7.698163	AGTTAGGAATGGAGGAAGTATCAAT	57.302	36.000	0.00	0.00	0.00	2.57
735	742	8.652290	AGTTAGGAATGGAGGAAGTATCAATAC	58.348	37.037	0.00	0.00	0.00	1.89
815	822	9.026074	ACAAATTACGTTCATTACCTTTGTTTG	57.974	29.630	0.00	0.00	33.19	2.93
880	887	7.172532	TCCTTATTTGTATGTGGTGAATATCGC	59.827	37.037	0.00	0.00	0.00	4.58
1108	1117	3.702048	CGGAGGCGGGAAAGGACA	61.702	66.667	0.00	0.00	0.00	4.02
1119	1128	3.244112	CGGGAAAGGACACTGTAGACTTT	60.244	47.826	5.95	5.95	34.38	2.66
1276	1285	2.511145	GGGCGCTCTTGAGCTCAG	60.511	66.667	17.43	11.30	39.36	3.35
1372	1381	0.529992	GGCATCGTACCCACTACAGC	60.530	60.000	0.00	0.00	0.00	4.40
1446	1455	1.399089	GCACGTGACTCCTCTCTCTAC	59.601	57.143	22.23	0.00	0.00	2.59
1467	1476	2.111669	TCTATCGTAGCCGGCGGA	59.888	61.111	33.44	20.10	33.95	5.54
1490	1499	0.960364	CACGTGCAAGGCCTGGTTAT	60.960	55.000	5.69	0.00	0.00	1.89
1542	1551	2.580322	ACCCATGTCCAACATATCCACA	59.420	45.455	0.00	0.00	36.53	4.17
1575	1584	1.972872	ACAAGCTCAACAGGGAACAG	58.027	50.000	0.00	0.00	0.00	3.16
1577	1586	2.149578	CAAGCTCAACAGGGAACAGAG	58.850	52.381	0.00	0.00	0.00	3.35
1727	1736	4.208047	CGTTCGATATTCTCAAGGCTTCAG	59.792	45.833	0.00	0.00	0.00	3.02
1768	1777	3.960755	TCACCGATGTGTTCCTATCTGAT	59.039	43.478	0.00	0.00	43.26	2.90
1826	1835	1.819288	CTCGTACATCCAGTGGTGAGT	59.181	52.381	9.54	8.90	0.00	3.41
1906	1915	6.434028	ACCATTTGGATAATAAGCGTATGCAT	59.566	34.615	10.11	3.79	40.59	3.96
1916	1925	1.066002	AGCGTATGCATTGAACCATGC	59.934	47.619	3.54	2.32	46.23	4.06
1951	1960	9.491675	AAAGAATTTGTCATTCATGTATTTGCA	57.508	25.926	0.00	0.00	36.60	4.08
1971	1980	3.305539	GCATGACCAATGACTTGAAAGCA	60.306	43.478	0.00	0.00	38.72	3.91
2042	2051	3.529319	ACCCAAGGAGAGCCTATCAAAAT	59.471	43.478	0.00	0.00	46.28	1.82
2046	2055	5.832060	CCAAGGAGAGCCTATCAAAATCATT	59.168	40.000	0.00	0.00	46.28	2.57
2142	2152	7.375834	CACAACACTAGTATTCTTGTCACCTA	58.624	38.462	0.00	0.00	0.00	3.08
2207	2217	4.274147	CCAGACTGGTACTACTGTCATCT	58.726	47.826	13.84	0.00	40.49	2.90
2211	2221	3.878103	ACTGGTACTACTGTCATCTAGCG	59.122	47.826	0.00	0.00	0.00	4.26
2221	2231	4.093998	ACTGTCATCTAGCGCATTTGAAAG	59.906	41.667	11.47	13.51	0.00	2.62
2235	2245	6.162777	GCATTTGAAAGTTAAATGGTGCCTA	58.837	36.000	11.34	0.00	42.76	3.93
2319	2330	7.703058	ACTAAACTCATTGGAACCCATTTAG	57.297	36.000	11.51	11.51	37.23	1.85
2329	2340	8.558700	CATTGGAACCCATTTAGTTTTGAAAAG	58.441	33.333	0.00	0.00	31.53	2.27
2399	2410	9.023962	AGTTCCAATTACAATTCATACATGTGT	57.976	29.630	9.11	0.00	0.00	3.72
2436	2452	7.044181	ACTTTCTCATACACACCTCATACATG	58.956	38.462	0.00	0.00	0.00	3.21
2509	2528	7.984002	TTCATATTACAATGTGCCAAATTCG	57.016	32.000	0.00	0.00	0.00	3.34
2520	2539	2.360483	TGCCAAATTCGAAAGTGCTTCA	59.640	40.909	0.00	0.00	33.17	3.02
2542	2561	7.301068	TCAACAAAACAAAGTGCCAAATTAG	57.699	32.000	0.00	0.00	0.00	1.73
2544	2563	6.902224	ACAAAACAAAGTGCCAAATTAGAC	57.098	33.333	0.00	0.00	0.00	2.59
2580	2599	8.697846	ACAATAGATGATTCAAAGTTGCAATG	57.302	30.769	0.59	0.00	0.00	2.82
2595	2614	3.704512	TGCAATGCACAAAGTGTTAGTG	58.295	40.909	2.72	0.00	35.75	2.74
2610	2629	5.412594	AGTGTTAGTGCACATGATAAAGTGG	59.587	40.000	21.04	0.00	41.52	4.00
2810	2937	5.172687	TGGACACATATAGAAAGTGCCAA	57.827	39.130	0.00	0.00	36.90	4.52
2813	2940	6.095300	TGGACACATATAGAAAGTGCCAATTG	59.905	38.462	0.00	0.00	36.90	2.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.308690	GGTGCCCAGACTACTACTAGG	58.691	57.143	0.00	0.00	0.00	3.02
1	2	2.688958	GTGGTGCCCAGACTACTACTAG	59.311	54.545	0.00	0.00	32.34	2.57
2	3	2.731572	GTGGTGCCCAGACTACTACTA	58.268	52.381	0.00	0.00	32.34	1.82
3	4	1.558233	GTGGTGCCCAGACTACTACT	58.442	55.000	0.00	0.00	32.34	2.57
4	5	0.172803	CGTGGTGCCCAGACTACTAC	59.827	60.000	0.00	0.00	32.34	2.73
5	6	1.601419	GCGTGGTGCCCAGACTACTA	61.601	60.000	0.00	0.00	37.76	1.82
6	7	2.943978	GCGTGGTGCCCAGACTACT	61.944	63.158	0.00	0.00	37.76	2.57
7	8	2.434359	GCGTGGTGCCCAGACTAC	60.434	66.667	0.00	0.00	37.76	2.73
24	25	3.123804	CGGGTTAATGTGCTAGCAGTAG	58.876	50.000	20.03	0.00	0.00	2.57
25	26	2.498481	ACGGGTTAATGTGCTAGCAGTA	59.502	45.455	20.03	11.08	0.00	2.74
26	27	1.278127	ACGGGTTAATGTGCTAGCAGT	59.722	47.619	20.03	7.25	0.00	4.40
27	28	1.665679	CACGGGTTAATGTGCTAGCAG	59.334	52.381	20.03	5.40	0.00	4.24
28	29	1.732941	CACGGGTTAATGTGCTAGCA	58.267	50.000	14.93	14.93	0.00	3.49
34	35	4.119442	AGTAGTAGCACGGGTTAATGTG	57.881	45.455	0.00	2.20	39.10	3.21
35	36	4.340381	CCTAGTAGTAGCACGGGTTAATGT	59.660	45.833	0.00	0.00	0.00	2.71
36	37	4.261909	CCCTAGTAGTAGCACGGGTTAATG	60.262	50.000	0.00	0.00	0.00	1.90
37	38	3.893813	CCCTAGTAGTAGCACGGGTTAAT	59.106	47.826	0.00	0.00	0.00	1.40
38	39	3.290710	CCCTAGTAGTAGCACGGGTTAA	58.709	50.000	0.00	0.00	0.00	2.01
39	40	2.242196	ACCCTAGTAGTAGCACGGGTTA	59.758	50.000	0.00	0.00	41.99	2.85
40	41	1.006400	ACCCTAGTAGTAGCACGGGTT	59.994	52.381	0.00	0.00	41.99	4.11
41	42	0.627986	ACCCTAGTAGTAGCACGGGT	59.372	55.000	0.00	0.00	39.98	5.28
46	47	4.070681	AGGGAAAACCCTAGTAGTAGCA	57.929	45.455	5.97	0.00	41.63	3.49
65	66	4.631813	GCAGATTTTGGACACACTACTAGG	59.368	45.833	0.00	0.00	0.00	3.02
79	80	5.186996	AGGTGTAGTTTGTGCAGATTTTG	57.813	39.130	0.00	0.00	0.00	2.44
114	115	2.038426	TGACACCTCCTATGTTGTGTGG	59.962	50.000	0.00	0.00	41.69	4.17
115	116	3.401033	TGACACCTCCTATGTTGTGTG	57.599	47.619	0.00	0.00	41.69	3.82
145	146	0.108329	ACGAAACCATAGCCGTGGAG	60.108	55.000	11.63	3.38	42.02	3.86
152	153	3.585862	TGAGAACTCACGAAACCATAGC	58.414	45.455	0.00	0.00	34.14	2.97
157	158	4.609691	TTTGTTGAGAACTCACGAAACC	57.390	40.909	3.88	0.00	39.66	3.27
173	174	6.530019	AACAGTTGGTCTTCTTCATTTGTT	57.470	33.333	0.00	0.00	0.00	2.83
460	463	7.596494	ACATGATAAATGAGGAAACAACACAG	58.404	34.615	0.00	0.00	0.00	3.66
710	716	7.599245	CGTATTGATACTTCCTCCATTCCTAAC	59.401	40.741	0.22	0.00	0.00	2.34
790	797	9.026074	ACAAACAAAGGTAATGAACGTAATTTG	57.974	29.630	2.11	0.00	33.18	2.32
1098	1107	4.040584	AGAAAGTCTACAGTGTCCTTTCCC	59.959	45.833	24.75	12.45	41.05	3.97
1108	1117	4.156477	AGGCTGAAGAGAAAGTCTACAGT	58.844	43.478	0.00	0.00	32.65	3.55
1119	1128	0.256177	TCGCTAGGAGGCTGAAGAGA	59.744	55.000	0.00	0.00	0.00	3.10
1171	1180	0.181350	CCTACCCCATCACTTCCAGC	59.819	60.000	0.00	0.00	0.00	4.85
1173	1182	1.622607	CGCCTACCCCATCACTTCCA	61.623	60.000	0.00	0.00	0.00	3.53
1230	1239	3.737972	CGATCTTGCTGTGCATGTACCTA	60.738	47.826	11.66	0.00	38.76	3.08
1276	1285	0.623723	TGAAGGAACATGGGCCTACC	59.376	55.000	4.53	0.00	40.81	3.18
1446	1455	2.952245	CCGGCTACGATAGACCCG	59.048	66.667	0.00	0.00	44.60	5.28
1490	1499	6.408092	GGTGAGGTCATCCATGATAGTGTAAA	60.408	42.308	0.00	0.00	39.30	2.01
1542	1551	3.077359	GAGCTTGTTTATCAGCACCACT	58.923	45.455	0.00	0.00	0.00	4.00
1575	1584	2.750637	TCGAGCACGAGGTCCCTC	60.751	66.667	0.88	3.09	43.81	4.30
1692	1701	5.470098	AGAATATCGAACGCCTGCAAATAAT	59.530	36.000	0.00	0.00	0.00	1.28
1693	1702	4.814234	AGAATATCGAACGCCTGCAAATAA	59.186	37.500	0.00	0.00	0.00	1.40
1727	1736	4.636206	GGTGAGGACAGTATTGGAATTCAC	59.364	45.833	7.93	0.00	0.00	3.18
1768	1777	9.442062	TTGGATAGGGAGACATTAGTATTGTTA	57.558	33.333	0.00	0.00	0.00	2.41
1778	1787	8.001292	CCTTTTATTCTTGGATAGGGAGACATT	58.999	37.037	0.00	0.00	0.00	2.71
1916	1925	8.870160	TGAATGACAAATTCTTTACAACCAAG	57.130	30.769	0.30	0.00	0.00	3.61
1951	1960	7.557358	TGTATATGCTTTCAAGTCATTGGTCAT	59.443	33.333	0.00	0.00	37.02	3.06
2006	2015	3.785887	TCCTTGGGTAATGGTTGCTAGAT	59.214	43.478	0.00	0.00	0.00	1.98
2046	2055	7.335422	GGCTCTACAGATCTCAAAGAAAAATCA	59.665	37.037	0.00	0.00	0.00	2.57
2065	2074	2.760092	TGCAAAATGGGAATGGCTCTAC	59.240	45.455	0.00	0.00	0.00	2.59
2142	2152	4.145807	AGTCTGACAGTTGTACTAGTGCT	58.854	43.478	12.42	0.00	0.00	4.40
2207	2217	5.861251	CACCATTTAACTTTCAAATGCGCTA	59.139	36.000	9.73	0.00	40.49	4.26
2211	2221	4.996758	AGGCACCATTTAACTTTCAAATGC	59.003	37.500	2.92	0.00	40.49	3.56
2338	2349	5.735922	GCACTTTCCTATTTTGTGTGCTCAA	60.736	40.000	0.00	0.00	43.79	3.02
2399	2410	5.416639	TGTATGAGAAAGTTGCGTACTCCTA	59.583	40.000	0.00	0.00	35.54	2.94
2436	2452	5.414454	TGATTGTTGTATAACCAGGCACTTC	59.586	40.000	0.00	0.00	35.92	3.01
2509	2528	6.298853	CACTTTGTTTTGTTGAAGCACTTTC	58.701	36.000	0.00	0.00	36.29	2.62
2520	2539	6.035542	CGTCTAATTTGGCACTTTGTTTTGTT	59.964	34.615	0.00	0.00	0.00	2.83
2595	2614	4.877823	TCATCTCACCACTTTATCATGTGC	59.122	41.667	0.00	0.00	33.26	4.57
2598	2617	8.667076	TTGTATCATCTCACCACTTTATCATG	57.333	34.615	0.00	0.00	0.00	3.07
2610	2629	7.221067	GTGTACTAGCACTTTGTATCATCTCAC	59.779	40.741	0.00	0.00	36.51	3.51
2682	2716	1.734465	CGCCTTCTGATTTGACACCTC	59.266	52.381	0.00	0.00	0.00	3.85
2758	2797	9.798885	GTGTGAACTTTTATCGATCATATAAGC	57.201	33.333	0.00	0.00	32.11	3.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.