Multiple sequence alignment - TraesCS5D01G035100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G035100 chr5D 100.000 6749 0 0 1 6749 34081761 34075013 0.000000e+00 12464.0
1 TraesCS5D01G035100 chr5D 80.320 1062 187 19 4280 5327 451674443 451675496 0.000000e+00 784.0
2 TraesCS5D01G035100 chr5B 93.207 5403 215 63 987 6309 25272144 25266814 0.000000e+00 7805.0
3 TraesCS5D01G035100 chr5B 89.185 638 54 12 1 629 25273504 25272873 0.000000e+00 782.0
4 TraesCS5D01G035100 chr5B 80.207 1061 190 17 4280 5327 551501874 551502927 0.000000e+00 778.0
5 TraesCS5D01G035100 chr5B 87.732 269 13 8 6371 6636 25266815 25266564 5.120000e-76 296.0
6 TraesCS5D01G035100 chr5B 93.985 133 5 1 6617 6749 25266273 25266144 1.480000e-46 198.0
7 TraesCS5D01G035100 chr5B 79.755 326 23 18 678 1000 25272447 25272162 5.340000e-46 196.0
8 TraesCS5D01G035100 chr5A 94.213 5115 188 51 985 6010 22714811 22719906 0.000000e+00 7707.0
9 TraesCS5D01G035100 chr5A 80.132 1062 189 19 4280 5327 570501987 570503040 0.000000e+00 773.0
10 TraesCS5D01G035100 chr5A 92.605 311 15 6 6014 6318 22719938 22720246 2.230000e-119 440.0
11 TraesCS5D01G035100 chr5A 83.841 328 27 9 6428 6749 22720274 22720581 8.560000e-74 289.0
12 TraesCS5D01G035100 chr5A 97.561 41 1 0 5918 5958 22719903 22719943 3.380000e-08 71.3
13 TraesCS5D01G035100 chr2B 88.462 468 28 14 5866 6309 76528373 76528838 5.950000e-150 542.0
14 TraesCS5D01G035100 chr2B 95.205 146 6 1 6371 6515 76528837 76528982 5.260000e-56 230.0
15 TraesCS5D01G035100 chr2B 87.313 134 13 4 463 594 442917499 442917368 4.220000e-32 150.0
16 TraesCS5D01G035100 chr2B 96.296 81 3 0 5244 5324 76528260 76528340 4.250000e-27 134.0
17 TraesCS5D01G035100 chr7A 80.511 313 34 19 1 302 473673598 473673894 1.470000e-51 215.0
18 TraesCS5D01G035100 chr7A 86.154 130 15 3 463 591 186409617 186409744 3.280000e-28 137.0
19 TraesCS5D01G035100 chr3B 93.269 104 4 3 361 464 5369903 5369803 4.220000e-32 150.0
20 TraesCS5D01G035100 chr1A 86.667 135 14 4 466 598 127116549 127116417 5.450000e-31 147.0
21 TraesCS5D01G035100 chr4B 88.983 118 11 2 460 576 171627461 171627345 1.960000e-30 145.0
22 TraesCS5D01G035100 chr4B 84.058 138 19 3 455 591 605070974 605071109 5.490000e-26 130.0
23 TraesCS5D01G035100 chrUn 85.507 138 16 4 458 594 134235151 134235017 2.540000e-29 141.0
24 TraesCS5D01G035100 chr3D 86.992 123 14 2 455 576 138759744 138759865 3.280000e-28 137.0
25 TraesCS5D01G035100 chr4A 85.075 134 14 4 466 595 674724289 674724420 1.530000e-26 132.0
26 TraesCS5D01G035100 chr3A 87.736 106 8 5 361 464 7645741 7645639 1.190000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G035100 chr5D 34075013 34081761 6748 True 12464.000 12464 100.0000 1 6749 1 chr5D.!!$R1 6748
1 TraesCS5D01G035100 chr5D 451674443 451675496 1053 False 784.000 784 80.3200 4280 5327 1 chr5D.!!$F1 1047
2 TraesCS5D01G035100 chr5B 25266144 25273504 7360 True 1855.400 7805 88.7728 1 6749 5 chr5B.!!$R1 6748
3 TraesCS5D01G035100 chr5B 551501874 551502927 1053 False 778.000 778 80.2070 4280 5327 1 chr5B.!!$F1 1047
4 TraesCS5D01G035100 chr5A 22714811 22720581 5770 False 2126.825 7707 92.0550 985 6749 4 chr5A.!!$F2 5764
5 TraesCS5D01G035100 chr5A 570501987 570503040 1053 False 773.000 773 80.1320 4280 5327 1 chr5A.!!$F1 1047
6 TraesCS5D01G035100 chr2B 76528260 76528982 722 False 302.000 542 93.3210 5244 6515 3 chr2B.!!$F1 1271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 1232 0.599060 ACCCAAAATTAACGCCACGG 59.401 50.000 0.00 0.0 0.00 4.94 F
1703 2186 0.107800 TCTCTCCGCGTACTGCTACT 60.108 55.000 4.92 0.0 43.27 2.57 F
1819 2308 0.808125 TTTTGTGCCGATCCCGATTG 59.192 50.000 0.00 0.0 38.22 2.67 F
2690 3186 2.814336 CCCAGCTGTTTCCACTAGTTTC 59.186 50.000 13.81 0.0 0.00 2.78 F
3224 3727 1.421268 TGGGAACTGCATCACTGAACT 59.579 47.619 0.00 0.0 0.00 3.01 F
4483 4987 0.840288 TCCAGGCAAACCAGGAGCTA 60.840 55.000 0.00 0.0 46.22 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 2289 0.808125 CAATCGGGATCGGCACAAAA 59.192 50.0 0.00 0.0 36.95 2.44 R
2965 3461 0.883833 CAAAACCAGTAGCCTGCCAG 59.116 55.0 0.00 0.0 37.38 4.85 R
3026 3527 1.279496 AACTGGTAGCCTGCTCATGA 58.721 50.0 0.00 0.0 0.00 3.07 R
4483 4987 0.322816 ACTGTGAGCGGATTGGCATT 60.323 50.0 0.00 0.0 34.64 3.56 R
5122 5635 0.745845 CCTTCTTGATGTCGGCCTGG 60.746 60.0 0.00 0.0 0.00 4.45 R
6361 6996 0.257039 AGCTCAGCCATTTTCCGGAT 59.743 50.0 4.15 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.564225 CAGTAAAATCGGGGGCAATAGTC 59.436 47.826 0.00 0.00 0.00 2.59
28 29 2.348411 AATCGGGGGCAATAGTCAAG 57.652 50.000 0.00 0.00 0.00 3.02
30 31 1.281419 TCGGGGGCAATAGTCAAGAA 58.719 50.000 0.00 0.00 0.00 2.52
34 35 3.447229 CGGGGGCAATAGTCAAGAAAAAT 59.553 43.478 0.00 0.00 0.00 1.82
35 36 4.677779 CGGGGGCAATAGTCAAGAAAAATG 60.678 45.833 0.00 0.00 0.00 2.32
36 37 4.222810 GGGGGCAATAGTCAAGAAAAATGT 59.777 41.667 0.00 0.00 0.00 2.71
95 98 8.901793 ACAAATTTTCTATGTGGTTGCAAAAAT 58.098 25.926 0.00 0.00 0.00 1.82
107 110 9.716531 TGTGGTTGCAAAAATTTATCATGAATA 57.283 25.926 0.00 0.00 0.00 1.75
124 127 6.316140 TCATGAATAAACATTCCTGGAAGTCG 59.684 38.462 15.34 8.31 30.47 4.18
359 367 8.716674 ATTTTCAATATGGATCTAATGGCACT 57.283 30.769 0.00 0.00 0.00 4.40
404 413 5.381757 ACATTTTAGGTGTAAGCTTGGTCA 58.618 37.500 9.86 2.95 46.63 4.02
510 519 9.799106 AAGTCTTTTTAGGATTTCAATGAGAGA 57.201 29.630 0.00 0.00 0.00 3.10
531 540 7.097192 AGAGACTACATACGAAGCAAAATGAA 58.903 34.615 0.00 0.00 0.00 2.57
532 541 7.766278 AGAGACTACATACGAAGCAAAATGAAT 59.234 33.333 0.00 0.00 0.00 2.57
533 542 8.942338 AGACTACATACGAAGCAAAATGAATA 57.058 30.769 0.00 0.00 0.00 1.75
535 544 9.638300 GACTACATACGAAGCAAAATGAATAAG 57.362 33.333 0.00 0.00 0.00 1.73
544 553 8.230486 CGAAGCAAAATGAATAAGTCTACACTT 58.770 33.333 0.00 0.00 45.39 3.16
595 604 9.853177 ATGTAGTCCCTTATTGAAATCTTTAGG 57.147 33.333 0.00 0.00 0.00 2.69
612 621 6.197168 TCTTTAGGAACGGAGGGAGTATAAA 58.803 40.000 0.00 0.00 0.00 1.40
615 624 7.530426 TTAGGAACGGAGGGAGTATAAATAC 57.470 40.000 0.00 0.00 0.00 1.89
622 631 7.955918 ACGGAGGGAGTATAAATACGTATTTT 58.044 34.615 32.09 22.55 38.28 1.82
633 642 6.373186 AAATACGTATTTTAAGAGCTGGCC 57.627 37.500 24.43 0.00 32.28 5.36
634 643 3.343941 ACGTATTTTAAGAGCTGGCCA 57.656 42.857 4.71 4.71 0.00 5.36
635 644 3.681593 ACGTATTTTAAGAGCTGGCCAA 58.318 40.909 7.01 0.00 0.00 4.52
637 646 3.065371 CGTATTTTAAGAGCTGGCCAAGG 59.935 47.826 7.01 0.00 0.00 3.61
638 647 1.923356 TTTTAAGAGCTGGCCAAGGG 58.077 50.000 7.01 0.00 0.00 3.95
657 1051 1.472026 GGCACCAAATATGCAAGGCAG 60.472 52.381 0.00 0.00 43.65 4.85
668 1062 3.435105 TGCAAGGCAGTAACAAACAAG 57.565 42.857 0.00 0.00 33.32 3.16
670 1064 2.360801 GCAAGGCAGTAACAAACAAGGA 59.639 45.455 0.00 0.00 0.00 3.36
671 1065 3.795488 GCAAGGCAGTAACAAACAAGGAC 60.795 47.826 0.00 0.00 0.00 3.85
672 1066 2.218603 AGGCAGTAACAAACAAGGACG 58.781 47.619 0.00 0.00 0.00 4.79
673 1067 1.334689 GGCAGTAACAAACAAGGACGC 60.335 52.381 0.00 0.00 0.00 5.19
674 1068 1.332375 GCAGTAACAAACAAGGACGCA 59.668 47.619 0.00 0.00 0.00 5.24
675 1069 2.853281 GCAGTAACAAACAAGGACGCAC 60.853 50.000 0.00 0.00 0.00 5.34
676 1070 1.944709 AGTAACAAACAAGGACGCACC 59.055 47.619 0.00 0.00 39.35 5.01
677 1071 0.938713 TAACAAACAAGGACGCACCG 59.061 50.000 0.00 0.00 44.74 4.94
705 1099 4.451150 TGCTCCATCGGTCCACGC 62.451 66.667 0.00 0.00 43.86 5.34
706 1100 4.451150 GCTCCATCGGTCCACGCA 62.451 66.667 0.00 0.00 43.86 5.24
707 1101 2.509336 CTCCATCGGTCCACGCAC 60.509 66.667 0.00 0.00 43.86 5.34
747 1141 2.869503 ATCCGACGGCCACCATCAAC 62.870 60.000 9.66 0.00 0.00 3.18
765 1159 1.375551 ACCCAAACACGTCACAGAAC 58.624 50.000 0.00 0.00 0.00 3.01
766 1160 1.339247 ACCCAAACACGTCACAGAACA 60.339 47.619 0.00 0.00 0.00 3.18
767 1161 1.063469 CCCAAACACGTCACAGAACAC 59.937 52.381 0.00 0.00 0.00 3.32
768 1162 1.267334 CCAAACACGTCACAGAACACG 60.267 52.381 0.00 0.00 41.90 4.49
788 1182 9.620660 GAACACGAGAAACCAACATAATAAAAT 57.379 29.630 0.00 0.00 0.00 1.82
812 1206 7.214467 TCTTATCCACAACCAAAGATTCAAC 57.786 36.000 0.00 0.00 0.00 3.18
813 1207 7.004086 TCTTATCCACAACCAAAGATTCAACT 58.996 34.615 0.00 0.00 0.00 3.16
816 1210 6.385649 TCCACAACCAAAGATTCAACTAAC 57.614 37.500 0.00 0.00 0.00 2.34
817 1211 6.126409 TCCACAACCAAAGATTCAACTAACT 58.874 36.000 0.00 0.00 0.00 2.24
818 1212 6.039270 TCCACAACCAAAGATTCAACTAACTG 59.961 38.462 0.00 0.00 0.00 3.16
819 1213 6.039270 CCACAACCAAAGATTCAACTAACTGA 59.961 38.462 0.00 0.00 0.00 3.41
823 1217 5.070001 CCAAAGATTCAACTAACTGACCCA 58.930 41.667 0.00 0.00 0.00 4.51
826 1220 7.417342 CCAAAGATTCAACTAACTGACCCAAAA 60.417 37.037 0.00 0.00 0.00 2.44
827 1221 7.839680 AAGATTCAACTAACTGACCCAAAAT 57.160 32.000 0.00 0.00 0.00 1.82
828 1222 7.839680 AGATTCAACTAACTGACCCAAAATT 57.160 32.000 0.00 0.00 0.00 1.82
829 1223 8.934023 AGATTCAACTAACTGACCCAAAATTA 57.066 30.769 0.00 0.00 0.00 1.40
830 1224 9.362151 AGATTCAACTAACTGACCCAAAATTAA 57.638 29.630 0.00 0.00 0.00 1.40
831 1225 9.406828 GATTCAACTAACTGACCCAAAATTAAC 57.593 33.333 0.00 0.00 0.00 2.01
832 1226 6.961576 TCAACTAACTGACCCAAAATTAACG 58.038 36.000 0.00 0.00 0.00 3.18
833 1227 5.366829 ACTAACTGACCCAAAATTAACGC 57.633 39.130 0.00 0.00 0.00 4.84
834 1228 3.653539 AACTGACCCAAAATTAACGCC 57.346 42.857 0.00 0.00 0.00 5.68
835 1229 2.588620 ACTGACCCAAAATTAACGCCA 58.411 42.857 0.00 0.00 0.00 5.69
836 1230 2.295070 ACTGACCCAAAATTAACGCCAC 59.705 45.455 0.00 0.00 0.00 5.01
837 1231 1.267261 TGACCCAAAATTAACGCCACG 59.733 47.619 0.00 0.00 0.00 4.94
838 1232 0.599060 ACCCAAAATTAACGCCACGG 59.401 50.000 0.00 0.00 0.00 4.94
839 1233 0.882474 CCCAAAATTAACGCCACGGA 59.118 50.000 0.00 0.00 0.00 4.69
840 1234 1.474879 CCCAAAATTAACGCCACGGAT 59.525 47.619 0.00 0.00 0.00 4.18
841 1235 2.683867 CCCAAAATTAACGCCACGGATA 59.316 45.455 0.00 0.00 0.00 2.59
842 1236 3.128938 CCCAAAATTAACGCCACGGATAA 59.871 43.478 0.00 0.00 0.00 1.75
843 1237 4.099824 CCAAAATTAACGCCACGGATAAC 58.900 43.478 0.00 0.00 0.00 1.89
844 1238 4.379603 CCAAAATTAACGCCACGGATAACA 60.380 41.667 0.00 0.00 0.00 2.41
845 1239 5.154932 CAAAATTAACGCCACGGATAACAA 58.845 37.500 0.00 0.00 0.00 2.83
846 1240 5.570234 AAATTAACGCCACGGATAACAAT 57.430 34.783 0.00 0.00 0.00 2.71
847 1241 6.680874 AAATTAACGCCACGGATAACAATA 57.319 33.333 0.00 0.00 0.00 1.90
848 1242 6.680874 AATTAACGCCACGGATAACAATAA 57.319 33.333 0.00 0.00 0.00 1.40
849 1243 5.467902 TTAACGCCACGGATAACAATAAC 57.532 39.130 0.00 0.00 0.00 1.89
850 1244 2.282407 ACGCCACGGATAACAATAACC 58.718 47.619 0.00 0.00 0.00 2.85
851 1245 1.600485 CGCCACGGATAACAATAACCC 59.400 52.381 0.00 0.00 0.00 4.11
852 1246 1.600485 GCCACGGATAACAATAACCCG 59.400 52.381 0.00 0.00 45.09 5.28
853 1247 2.215196 CCACGGATAACAATAACCCGG 58.785 52.381 0.00 0.00 43.98 5.73
854 1248 2.158928 CCACGGATAACAATAACCCGGA 60.159 50.000 0.73 0.00 43.98 5.14
855 1249 3.128349 CACGGATAACAATAACCCGGAG 58.872 50.000 0.73 0.00 43.98 4.63
897 1291 3.692690 GCACCCTGGACTAAATTTACCA 58.307 45.455 7.20 7.20 0.00 3.25
902 1296 3.315191 CCTGGACTAAATTTACCATGCCG 59.685 47.826 7.74 0.00 0.00 5.69
903 1297 3.283751 TGGACTAAATTTACCATGCCGG 58.716 45.455 0.00 0.00 42.50 6.13
934 1328 8.445275 TTCATAAAAAGGAAAAAGGGAAAAGC 57.555 30.769 0.00 0.00 0.00 3.51
935 1329 6.995686 TCATAAAAAGGAAAAAGGGAAAAGCC 59.004 34.615 0.00 0.00 0.00 4.35
936 1330 3.469008 AAAGGAAAAAGGGAAAAGCCG 57.531 42.857 0.00 0.00 37.63 5.52
937 1331 2.082140 AGGAAAAAGGGAAAAGCCGT 57.918 45.000 0.00 0.00 37.63 5.68
939 1333 3.568443 AGGAAAAAGGGAAAAGCCGTAA 58.432 40.909 0.00 0.00 37.63 3.18
940 1334 4.157246 AGGAAAAAGGGAAAAGCCGTAAT 58.843 39.130 0.00 0.00 37.63 1.89
941 1335 5.326900 AGGAAAAAGGGAAAAGCCGTAATA 58.673 37.500 0.00 0.00 37.63 0.98
942 1336 5.955959 AGGAAAAAGGGAAAAGCCGTAATAT 59.044 36.000 0.00 0.00 37.63 1.28
943 1337 6.439375 AGGAAAAAGGGAAAAGCCGTAATATT 59.561 34.615 0.00 0.00 37.63 1.28
944 1338 7.038587 AGGAAAAAGGGAAAAGCCGTAATATTT 60.039 33.333 0.00 0.00 37.63 1.40
945 1339 7.064134 GGAAAAAGGGAAAAGCCGTAATATTTG 59.936 37.037 0.00 0.00 37.63 2.32
946 1340 6.599356 AAAGGGAAAAGCCGTAATATTTGT 57.401 33.333 0.00 0.00 37.63 2.83
947 1341 5.576447 AGGGAAAAGCCGTAATATTTGTG 57.424 39.130 0.00 0.00 37.63 3.33
1021 1449 1.977544 CACTCTCCTCCGTCCGGTT 60.978 63.158 0.00 0.00 36.47 4.44
1071 1505 6.492087 CGTATATTCTTCTTCTTCCTCCTCCT 59.508 42.308 0.00 0.00 0.00 3.69
1114 1548 2.420568 CGAACTCCCCGAATCCCGA 61.421 63.158 0.00 0.00 41.76 5.14
1158 1593 2.677228 CTTGTCAATCCCGCCCCT 59.323 61.111 0.00 0.00 0.00 4.79
1159 1594 1.000896 CTTGTCAATCCCGCCCCTT 60.001 57.895 0.00 0.00 0.00 3.95
1160 1595 1.001393 TTGTCAATCCCGCCCCTTC 60.001 57.895 0.00 0.00 0.00 3.46
1199 1634 3.186047 CGTCACGCCCGATTCCAC 61.186 66.667 0.00 0.00 0.00 4.02
1545 2004 2.828549 GGCGGTGGATGCGGAATT 60.829 61.111 0.00 0.00 0.00 2.17
1650 2118 2.204151 CCACCCCTGGGACCTCTT 60.204 66.667 16.20 0.00 38.96 2.85
1703 2186 0.107800 TCTCTCCGCGTACTGCTACT 60.108 55.000 4.92 0.00 43.27 2.57
1707 2190 1.874019 CCGCGTACTGCTACTGCTG 60.874 63.158 4.92 0.00 43.27 4.41
1741 2226 8.288217 TCGTGTCAAAATTAAAGTAATTTGGC 57.712 30.769 6.72 0.00 44.98 4.52
1777 2266 7.069569 CGTAATTGGATCGATGGATTTGTTAC 58.930 38.462 0.54 2.62 31.51 2.50
1789 2278 8.172484 CGATGGATTTGTTACTTTGACGATTTA 58.828 33.333 0.00 0.00 0.00 1.40
1799 2288 0.828022 TGACGATTTATCCACCCGCT 59.172 50.000 0.00 0.00 0.00 5.52
1800 2289 1.208535 TGACGATTTATCCACCCGCTT 59.791 47.619 0.00 0.00 0.00 4.68
1812 2301 1.154035 CCCGCTTTTTGTGCCGATC 60.154 57.895 0.00 0.00 0.00 3.69
1814 2303 1.154035 CGCTTTTTGTGCCGATCCC 60.154 57.895 0.00 0.00 0.00 3.85
1819 2308 0.808125 TTTTGTGCCGATCCCGATTG 59.192 50.000 0.00 0.00 38.22 2.67
1831 2320 3.423539 TCCCGATTGGATTGGATCATC 57.576 47.619 0.00 0.00 38.61 2.92
2194 2689 5.682943 TTTCAGTTTTTGTGACGATAGGG 57.317 39.130 0.00 0.00 43.77 3.53
2314 2810 6.657541 TCTCCAAATCGGTTTAGCTTTATTGT 59.342 34.615 0.00 0.00 35.57 2.71
2315 2811 6.616947 TCCAAATCGGTTTAGCTTTATTGTG 58.383 36.000 0.00 0.00 35.57 3.33
2359 2855 3.074412 ACAATGAGGTGTTTTCTAGCCG 58.926 45.455 0.00 0.00 0.00 5.52
2377 2873 3.965347 AGCCGGTATATGTTTGTCTAGGT 59.035 43.478 1.90 0.00 0.00 3.08
2381 2877 6.218746 CCGGTATATGTTTGTCTAGGTAACC 58.781 44.000 0.00 0.00 37.17 2.85
2384 2880 7.491682 GGTATATGTTTGTCTAGGTAACCGAA 58.508 38.462 0.00 0.00 37.17 4.30
2395 2891 9.675464 TGTCTAGGTAACCGAATTATTTGAATT 57.325 29.630 0.00 0.00 37.17 2.17
2616 3112 3.196463 CTGCCAATTGTTGCTTTGTGAA 58.804 40.909 4.43 0.00 0.00 3.18
2690 3186 2.814336 CCCAGCTGTTTCCACTAGTTTC 59.186 50.000 13.81 0.00 0.00 2.78
2693 3189 3.499918 CAGCTGTTTCCACTAGTTTCTGG 59.500 47.826 5.25 0.00 0.00 3.86
2849 3345 5.485662 AAGAAACGGATAGCTACAATTGC 57.514 39.130 5.05 0.00 0.00 3.56
2965 3461 5.758296 TGACCGCATCATTTAAATCTCTACC 59.242 40.000 0.00 0.00 29.99 3.18
3026 3527 3.159213 TGACCACAGCATTCAAATCCT 57.841 42.857 0.00 0.00 0.00 3.24
3079 3581 9.620660 GTTAAACTAGTGTAAATTGGAATGTGG 57.379 33.333 7.10 0.00 0.00 4.17
3112 3614 6.187125 TGCATCTTCTTTTGATTAGTCTGC 57.813 37.500 0.00 0.00 0.00 4.26
3150 3653 5.046376 TGCACTTTATCTGACCTCTCAATGA 60.046 40.000 0.00 0.00 0.00 2.57
3197 3700 4.890158 AATAAAGGCCCAAAAGGTGAAG 57.110 40.909 0.00 0.00 38.26 3.02
3224 3727 1.421268 TGGGAACTGCATCACTGAACT 59.579 47.619 0.00 0.00 0.00 3.01
3242 3745 7.009999 CACTGAACTTAGCAGATTACACATCTC 59.990 40.741 0.00 0.00 36.86 2.75
3373 3877 8.393366 CAGTGACACTTTCTTGTCCAATATATG 58.607 37.037 5.04 0.00 44.63 1.78
3406 3910 9.895138 TCTCATTGGAACACCATATATCATATG 57.105 33.333 0.00 0.00 39.29 1.78
3431 3935 7.774157 TGGTCAACCAGTTTGTTAATTACTGTA 59.226 33.333 0.00 0.00 42.01 2.74
3433 3937 8.071967 GTCAACCAGTTTGTTAATTACTGTACC 58.928 37.037 11.31 0.00 38.04 3.34
3788 4292 3.445008 TGTCAGGAAGTCCTTCAGCTAT 58.555 45.455 9.12 0.00 46.09 2.97
4103 4607 3.873952 CCTCTTCTGATGAATCCGTTTCC 59.126 47.826 0.00 0.00 33.04 3.13
4135 4639 7.775561 ACCTATTTCTTTCATATCTTGGGACAC 59.224 37.037 0.00 0.00 39.29 3.67
4195 4699 4.887071 GCCCATTTCCCTTTGTTTTTCTTT 59.113 37.500 0.00 0.00 0.00 2.52
4483 4987 0.840288 TCCAGGCAAACCAGGAGCTA 60.840 55.000 0.00 0.00 46.22 3.32
4577 5081 3.181449 TGAGACCTATAGAGAGCGCTTCT 60.181 47.826 13.26 18.20 39.43 2.85
4660 5164 4.315803 CTCCTAACAAGTCATTCGTTGGT 58.684 43.478 0.00 0.00 0.00 3.67
4917 5424 6.183360 GCATACATCTTGAAGTTCGATGACAA 60.183 38.462 20.89 10.48 38.27 3.18
5035 5545 3.292936 AGCGGAACCGACGACACT 61.293 61.111 17.63 0.33 42.83 3.55
5122 5635 3.675563 ATCCCGATCCGCGAGCTC 61.676 66.667 8.23 2.73 44.57 4.09
5362 5878 1.035385 TGCCGAGAGCTAATCGACCA 61.035 55.000 19.46 13.56 42.76 4.02
5364 5880 1.025812 CCGAGAGCTAATCGACCAGT 58.974 55.000 19.46 0.00 42.76 4.00
5405 5935 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
5406 5936 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
5407 5937 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
5408 5938 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
5569 6112 0.592247 CCGTTTTGCTCTGTGTGTGC 60.592 55.000 0.00 0.00 35.88 4.57
5597 6140 4.336713 GTGTTTTCCTTCACTTTCTCTGCT 59.663 41.667 0.00 0.00 0.00 4.24
5659 6203 2.465813 AGAATGCTGTCTGCTCCTACT 58.534 47.619 3.20 0.00 43.37 2.57
5705 6256 3.391296 TGGGACCTGTAATCATCCTTAGC 59.609 47.826 0.00 0.00 0.00 3.09
5755 6306 7.283625 TGTTAATTATTATGCCATGTGTCCC 57.716 36.000 0.00 0.00 0.00 4.46
5758 6309 2.664402 ATTATGCCATGTGTCCCTCC 57.336 50.000 0.00 0.00 0.00 4.30
5760 6311 0.839277 TATGCCATGTGTCCCTCCTG 59.161 55.000 0.00 0.00 0.00 3.86
5761 6312 0.915872 ATGCCATGTGTCCCTCCTGA 60.916 55.000 0.00 0.00 0.00 3.86
5764 6315 1.504912 CCATGTGTCCCTCCTGAGAT 58.495 55.000 0.00 0.00 0.00 2.75
5765 6316 1.140452 CCATGTGTCCCTCCTGAGATG 59.860 57.143 0.00 0.00 0.00 2.90
5769 6329 3.516586 TGTGTCCCTCCTGAGATGTTTA 58.483 45.455 0.00 0.00 0.00 2.01
5770 6330 3.260884 TGTGTCCCTCCTGAGATGTTTAC 59.739 47.826 0.00 0.00 0.00 2.01
5781 6341 5.582665 CCTGAGATGTTTACCTACTGCTTTC 59.417 44.000 0.00 0.00 0.00 2.62
5814 6386 2.630098 TCTCCAGTTTCACAGGTCTGAG 59.370 50.000 4.84 0.00 0.00 3.35
5844 6416 5.893824 GGATTGAAGAAGGGGACATGTTTAT 59.106 40.000 0.00 0.00 0.00 1.40
5845 6417 7.060421 GGATTGAAGAAGGGGACATGTTTATA 58.940 38.462 0.00 0.00 0.00 0.98
5846 6418 7.229506 GGATTGAAGAAGGGGACATGTTTATAG 59.770 40.741 0.00 0.00 0.00 1.31
5847 6419 6.636454 TGAAGAAGGGGACATGTTTATAGT 57.364 37.500 0.00 0.00 0.00 2.12
5848 6420 7.027874 TGAAGAAGGGGACATGTTTATAGTT 57.972 36.000 0.00 0.00 0.00 2.24
5849 6421 7.110155 TGAAGAAGGGGACATGTTTATAGTTC 58.890 38.462 0.00 0.00 0.00 3.01
5851 6423 7.027874 AGAAGGGGACATGTTTATAGTTCAA 57.972 36.000 0.00 0.00 0.00 2.69
5852 6424 7.466804 AGAAGGGGACATGTTTATAGTTCAAA 58.533 34.615 0.00 0.00 0.00 2.69
5853 6425 7.947890 AGAAGGGGACATGTTTATAGTTCAAAA 59.052 33.333 0.00 0.00 0.00 2.44
5854 6426 8.485578 AAGGGGACATGTTTATAGTTCAAAAA 57.514 30.769 0.00 0.00 0.00 1.94
5975 6549 3.614092 TCCTTGGATGATGAGCAGTTTC 58.386 45.455 0.00 0.00 0.00 2.78
6061 6668 1.021390 CGGTGCATGACAGGGAACTC 61.021 60.000 0.00 0.00 40.21 3.01
6077 6684 0.914644 ACTCATCCCATCCACCACAG 59.085 55.000 0.00 0.00 0.00 3.66
6095 6708 6.863126 CACCACAGATGTATTTCTTTTTGGAC 59.137 38.462 0.00 0.00 0.00 4.02
6101 6714 5.103290 TGTATTTCTTTTTGGACGAGTGC 57.897 39.130 0.00 0.00 0.00 4.40
6183 6806 2.483876 ACATGTGACAGGTCAAAGTCG 58.516 47.619 3.28 0.00 41.85 4.18
6305 6940 2.438392 TGCTCATCAGATTCAGATGGCT 59.562 45.455 21.43 0.00 42.38 4.75
6309 6944 5.569026 GCTCATCAGATTCAGATGGCTCATA 60.569 44.000 16.30 0.00 42.38 2.15
6310 6945 6.622427 TCATCAGATTCAGATGGCTCATAT 57.378 37.500 16.30 0.00 42.38 1.78
6311 6946 7.017319 TCATCAGATTCAGATGGCTCATATT 57.983 36.000 16.30 0.00 42.38 1.28
6312 6947 6.879458 TCATCAGATTCAGATGGCTCATATTG 59.121 38.462 16.30 0.00 42.38 1.90
6313 6948 6.429521 TCAGATTCAGATGGCTCATATTGA 57.570 37.500 0.00 0.00 0.00 2.57
6314 6949 6.228995 TCAGATTCAGATGGCTCATATTGAC 58.771 40.000 0.00 0.00 0.00 3.18
6315 6950 5.411977 CAGATTCAGATGGCTCATATTGACC 59.588 44.000 0.00 0.00 0.00 4.02
6316 6951 5.310068 AGATTCAGATGGCTCATATTGACCT 59.690 40.000 0.00 0.00 0.00 3.85
6317 6952 4.347360 TCAGATGGCTCATATTGACCTG 57.653 45.455 0.00 0.00 0.00 4.00
6318 6953 3.713248 TCAGATGGCTCATATTGACCTGT 59.287 43.478 0.00 0.00 0.00 4.00
6319 6954 4.901250 TCAGATGGCTCATATTGACCTGTA 59.099 41.667 0.00 0.00 0.00 2.74
6320 6955 5.011431 TCAGATGGCTCATATTGACCTGTAG 59.989 44.000 0.00 0.00 0.00 2.74
6321 6956 5.011431 CAGATGGCTCATATTGACCTGTAGA 59.989 44.000 0.00 0.00 0.00 2.59
6322 6957 5.784390 AGATGGCTCATATTGACCTGTAGAT 59.216 40.000 0.00 0.00 0.00 1.98
6323 6958 6.956435 AGATGGCTCATATTGACCTGTAGATA 59.044 38.462 0.00 0.00 0.00 1.98
6324 6959 6.346477 TGGCTCATATTGACCTGTAGATAC 57.654 41.667 0.00 0.00 0.00 2.24
6325 6960 5.838521 TGGCTCATATTGACCTGTAGATACA 59.161 40.000 0.00 0.00 34.56 2.29
6326 6961 6.326323 TGGCTCATATTGACCTGTAGATACAA 59.674 38.462 0.00 0.00 35.50 2.41
6327 6962 6.647067 GGCTCATATTGACCTGTAGATACAAC 59.353 42.308 0.00 0.00 35.50 3.32
6328 6963 7.437748 GCTCATATTGACCTGTAGATACAACT 58.562 38.462 0.00 0.00 35.50 3.16
6329 6964 7.596995 GCTCATATTGACCTGTAGATACAACTC 59.403 40.741 0.00 0.00 35.50 3.01
6330 6965 7.952671 TCATATTGACCTGTAGATACAACTCC 58.047 38.462 0.00 0.00 35.50 3.85
6331 6966 7.785028 TCATATTGACCTGTAGATACAACTCCT 59.215 37.037 0.00 0.00 35.50 3.69
6332 6967 9.078990 CATATTGACCTGTAGATACAACTCCTA 57.921 37.037 0.00 0.00 35.50 2.94
6333 6968 6.770746 TTGACCTGTAGATACAACTCCTAC 57.229 41.667 0.00 0.00 35.50 3.18
6334 6969 5.198965 TGACCTGTAGATACAACTCCTACC 58.801 45.833 0.00 0.00 35.50 3.18
6335 6970 5.198965 GACCTGTAGATACAACTCCTACCA 58.801 45.833 0.00 0.00 35.50 3.25
6336 6971 5.586877 ACCTGTAGATACAACTCCTACCAA 58.413 41.667 0.00 0.00 35.50 3.67
6337 6972 6.021030 ACCTGTAGATACAACTCCTACCAAA 58.979 40.000 0.00 0.00 35.50 3.28
6338 6973 6.499350 ACCTGTAGATACAACTCCTACCAAAA 59.501 38.462 0.00 0.00 35.50 2.44
6339 6974 7.182206 ACCTGTAGATACAACTCCTACCAAAAT 59.818 37.037 0.00 0.00 35.50 1.82
6340 6975 8.047310 CCTGTAGATACAACTCCTACCAAAATT 58.953 37.037 0.00 0.00 35.50 1.82
6341 6976 9.099454 CTGTAGATACAACTCCTACCAAAATTC 57.901 37.037 0.00 0.00 35.50 2.17
6342 6977 8.822805 TGTAGATACAACTCCTACCAAAATTCT 58.177 33.333 0.00 0.00 33.66 2.40
6345 6980 9.668497 AGATACAACTCCTACCAAAATTCTAAC 57.332 33.333 0.00 0.00 0.00 2.34
6346 6981 8.803397 ATACAACTCCTACCAAAATTCTAACC 57.197 34.615 0.00 0.00 0.00 2.85
6347 6982 6.607019 ACAACTCCTACCAAAATTCTAACCA 58.393 36.000 0.00 0.00 0.00 3.67
6348 6983 7.238710 ACAACTCCTACCAAAATTCTAACCAT 58.761 34.615 0.00 0.00 0.00 3.55
6349 6984 7.728532 ACAACTCCTACCAAAATTCTAACCATT 59.271 33.333 0.00 0.00 0.00 3.16
6350 6985 7.939784 ACTCCTACCAAAATTCTAACCATTC 57.060 36.000 0.00 0.00 0.00 2.67
6351 6986 7.699878 ACTCCTACCAAAATTCTAACCATTCT 58.300 34.615 0.00 0.00 0.00 2.40
6352 6987 8.832735 ACTCCTACCAAAATTCTAACCATTCTA 58.167 33.333 0.00 0.00 0.00 2.10
6353 6988 9.681062 CTCCTACCAAAATTCTAACCATTCTAA 57.319 33.333 0.00 0.00 0.00 2.10
6354 6989 9.457436 TCCTACCAAAATTCTAACCATTCTAAC 57.543 33.333 0.00 0.00 0.00 2.34
6355 6990 9.238368 CCTACCAAAATTCTAACCATTCTAACA 57.762 33.333 0.00 0.00 0.00 2.41
6358 6993 8.919145 ACCAAAATTCTAACCATTCTAACAACA 58.081 29.630 0.00 0.00 0.00 3.33
6359 6994 9.410556 CCAAAATTCTAACCATTCTAACAACAG 57.589 33.333 0.00 0.00 0.00 3.16
6360 6995 9.410556 CAAAATTCTAACCATTCTAACAACAGG 57.589 33.333 0.00 0.00 0.00 4.00
6361 6996 8.934023 AAATTCTAACCATTCTAACAACAGGA 57.066 30.769 0.00 0.00 0.00 3.86
6362 6997 9.533831 AAATTCTAACCATTCTAACAACAGGAT 57.466 29.630 0.00 0.00 0.00 3.24
6363 6998 8.738645 ATTCTAACCATTCTAACAACAGGATC 57.261 34.615 0.00 0.00 0.00 3.36
6364 6999 6.650120 TCTAACCATTCTAACAACAGGATCC 58.350 40.000 2.48 2.48 0.00 3.36
6365 7000 3.873910 ACCATTCTAACAACAGGATCCG 58.126 45.455 5.98 3.99 0.00 4.18
6366 7001 3.206150 CCATTCTAACAACAGGATCCGG 58.794 50.000 10.69 10.69 0.00 5.14
6367 7002 3.118408 CCATTCTAACAACAGGATCCGGA 60.118 47.826 19.55 6.61 0.00 5.14
6368 7003 4.513442 CATTCTAACAACAGGATCCGGAA 58.487 43.478 19.55 8.47 0.00 4.30
6369 7004 4.627284 TTCTAACAACAGGATCCGGAAA 57.373 40.909 19.55 0.00 0.00 3.13
6370 7005 4.627284 TCTAACAACAGGATCCGGAAAA 57.373 40.909 19.55 0.00 0.00 2.29
6371 7006 5.174037 TCTAACAACAGGATCCGGAAAAT 57.826 39.130 19.55 0.00 0.00 1.82
6405 7041 9.753669 CTGAAAACAAAACAGAAAAACAATACC 57.246 29.630 0.00 0.00 34.07 2.73
6502 7139 6.223120 ACTGTCAAAATGCCTGTAAAAATCC 58.777 36.000 0.00 0.00 0.00 3.01
6509 7160 4.255833 TGCCTGTAAAAATCCTGCAAAG 57.744 40.909 0.00 0.00 0.00 2.77
6511 7162 4.100808 TGCCTGTAAAAATCCTGCAAAGTT 59.899 37.500 0.00 0.00 0.00 2.66
6512 7163 4.686091 GCCTGTAAAAATCCTGCAAAGTTC 59.314 41.667 0.00 0.00 0.00 3.01
6513 7164 5.230182 CCTGTAAAAATCCTGCAAAGTTCC 58.770 41.667 0.00 0.00 0.00 3.62
6514 7165 5.011023 CCTGTAAAAATCCTGCAAAGTTCCT 59.989 40.000 0.00 0.00 0.00 3.36
6515 7166 5.841810 TGTAAAAATCCTGCAAAGTTCCTG 58.158 37.500 0.00 0.00 0.00 3.86
6516 7167 5.362430 TGTAAAAATCCTGCAAAGTTCCTGT 59.638 36.000 0.00 0.00 0.00 4.00
6517 7168 6.547880 TGTAAAAATCCTGCAAAGTTCCTGTA 59.452 34.615 0.00 0.00 0.00 2.74
6518 7169 6.478512 AAAAATCCTGCAAAGTTCCTGTAA 57.521 33.333 0.00 0.00 0.00 2.41
6519 7170 6.478512 AAAATCCTGCAAAGTTCCTGTAAA 57.521 33.333 0.00 0.00 0.00 2.01
6520 7171 6.478512 AAATCCTGCAAAGTTCCTGTAAAA 57.521 33.333 0.00 0.00 0.00 1.52
6521 7172 6.478512 AATCCTGCAAAGTTCCTGTAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
6522 7173 5.257082 TCCTGCAAAGTTCCTGTAAAAAC 57.743 39.130 0.00 0.00 0.00 2.43
6562 7213 5.152623 CTGTTCTAACAACAGGATCTGGA 57.847 43.478 6.59 0.00 42.83 3.86
6601 7252 1.675483 CAACCAGGCGCAATAGCAATA 59.325 47.619 10.83 0.00 42.27 1.90
6713 7674 2.836981 TGAAAAAGTTGGCATATGGGGG 59.163 45.455 4.56 0.00 0.00 5.40
6743 7704 1.108132 TGTGTGCTCAAAGCCATGCA 61.108 50.000 0.00 0.00 41.51 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.222810 ACATTTTTCTTGACTATTGCCCCC 59.777 41.667 0.00 0.00 0.00 5.40
67 70 6.154203 TGCAACCACATAGAAAATTTGTCA 57.846 33.333 0.00 0.00 0.00 3.58
107 110 2.504367 CCACGACTTCCAGGAATGTTT 58.496 47.619 1.09 0.00 0.00 2.83
189 195 2.039613 TGACATTGTGGTAGTCATGGCA 59.960 45.455 0.00 0.00 37.36 4.92
228 234 7.255242 CCTTTGACAGAAGTTTTCTATGCTTGA 60.255 37.037 0.00 0.00 38.11 3.02
445 454 9.531158 GGAGGGAGTATATAATAAGTGTGTAGT 57.469 37.037 0.00 0.00 0.00 2.73
446 455 8.675504 CGGAGGGAGTATATAATAAGTGTGTAG 58.324 40.741 0.00 0.00 0.00 2.74
447 456 8.166061 ACGGAGGGAGTATATAATAAGTGTGTA 58.834 37.037 0.00 0.00 0.00 2.90
448 457 7.008941 ACGGAGGGAGTATATAATAAGTGTGT 58.991 38.462 0.00 0.00 0.00 3.72
449 458 7.463961 ACGGAGGGAGTATATAATAAGTGTG 57.536 40.000 0.00 0.00 0.00 3.82
450 459 7.178097 GGAACGGAGGGAGTATATAATAAGTGT 59.822 40.741 0.00 0.00 0.00 3.55
452 461 7.477008 AGGAACGGAGGGAGTATATAATAAGT 58.523 38.462 0.00 0.00 0.00 2.24
466 475 7.957992 AAGACTTATATATAGGAACGGAGGG 57.042 40.000 8.74 0.00 0.00 4.30
494 503 7.285629 TCGTATGTAGTCTCTCATTGAAATCCT 59.714 37.037 0.00 0.00 0.00 3.24
500 509 5.357032 TGCTTCGTATGTAGTCTCTCATTGA 59.643 40.000 0.00 0.00 0.00 2.57
505 514 6.752351 TCATTTTGCTTCGTATGTAGTCTCTC 59.248 38.462 0.00 0.00 0.00 3.20
508 517 7.849804 ATTCATTTTGCTTCGTATGTAGTCT 57.150 32.000 0.00 0.00 0.00 3.24
510 519 9.162764 ACTTATTCATTTTGCTTCGTATGTAGT 57.837 29.630 0.00 0.00 0.00 2.73
514 523 9.638300 GTAGACTTATTCATTTTGCTTCGTATG 57.362 33.333 0.00 0.00 0.00 2.39
516 525 8.653338 GTGTAGACTTATTCATTTTGCTTCGTA 58.347 33.333 0.00 0.00 0.00 3.43
518 527 7.743104 AGTGTAGACTTATTCATTTTGCTTCG 58.257 34.615 0.00 0.00 0.00 3.79
576 585 6.826741 TCCGTTCCTAAAGATTTCAATAAGGG 59.173 38.462 0.00 0.00 0.00 3.95
584 593 4.081031 ACTCCCTCCGTTCCTAAAGATTTC 60.081 45.833 0.00 0.00 0.00 2.17
594 603 4.279420 ACGTATTTATACTCCCTCCGTTCC 59.721 45.833 0.00 0.00 0.00 3.62
595 604 5.444663 ACGTATTTATACTCCCTCCGTTC 57.555 43.478 0.00 0.00 0.00 3.95
612 621 5.031066 TGGCCAGCTCTTAAAATACGTAT 57.969 39.130 0.00 1.14 0.00 3.06
615 624 3.065371 CCTTGGCCAGCTCTTAAAATACG 59.935 47.826 5.11 0.00 0.00 3.06
622 631 2.677228 GCCCTTGGCCAGCTCTTA 59.323 61.111 5.11 0.00 44.06 2.10
632 641 1.193323 TGCATATTTGGTGCCCTTGG 58.807 50.000 0.00 0.00 41.83 3.61
633 642 2.419021 CCTTGCATATTTGGTGCCCTTG 60.419 50.000 0.00 0.00 41.83 3.61
634 643 1.832998 CCTTGCATATTTGGTGCCCTT 59.167 47.619 0.00 0.00 41.83 3.95
635 644 1.488390 CCTTGCATATTTGGTGCCCT 58.512 50.000 0.00 0.00 41.83 5.19
637 646 0.536260 TGCCTTGCATATTTGGTGCC 59.464 50.000 0.00 0.00 41.83 5.01
638 647 1.205417 ACTGCCTTGCATATTTGGTGC 59.795 47.619 0.00 0.00 42.81 5.01
639 648 4.082300 TGTTACTGCCTTGCATATTTGGTG 60.082 41.667 0.00 0.00 38.13 4.17
640 649 4.085733 TGTTACTGCCTTGCATATTTGGT 58.914 39.130 0.00 0.00 38.13 3.67
641 650 4.717233 TGTTACTGCCTTGCATATTTGG 57.283 40.909 0.00 0.00 38.13 3.28
643 652 6.095432 TGTTTGTTACTGCCTTGCATATTT 57.905 33.333 0.00 0.00 38.13 1.40
644 653 5.720371 TGTTTGTTACTGCCTTGCATATT 57.280 34.783 0.00 0.00 38.13 1.28
645 654 5.336690 CCTTGTTTGTTACTGCCTTGCATAT 60.337 40.000 0.00 0.00 38.13 1.78
646 655 4.022416 CCTTGTTTGTTACTGCCTTGCATA 60.022 41.667 0.00 0.00 38.13 3.14
647 656 3.243839 CCTTGTTTGTTACTGCCTTGCAT 60.244 43.478 0.00 0.00 38.13 3.96
648 657 2.100584 CCTTGTTTGTTACTGCCTTGCA 59.899 45.455 0.00 0.00 36.92 4.08
649 658 2.360801 TCCTTGTTTGTTACTGCCTTGC 59.639 45.455 0.00 0.00 0.00 4.01
650 659 3.548014 CGTCCTTGTTTGTTACTGCCTTG 60.548 47.826 0.00 0.00 0.00 3.61
651 660 2.616842 CGTCCTTGTTTGTTACTGCCTT 59.383 45.455 0.00 0.00 0.00 4.35
657 1051 1.333435 CGGTGCGTCCTTGTTTGTTAC 60.333 52.381 0.00 0.00 0.00 2.50
670 1064 4.309950 GGTTGGAGGACGGTGCGT 62.310 66.667 0.00 0.00 45.10 5.24
671 1065 4.003788 AGGTTGGAGGACGGTGCG 62.004 66.667 0.00 0.00 0.00 5.34
672 1066 2.358737 CAGGTTGGAGGACGGTGC 60.359 66.667 0.00 0.00 0.00 5.01
673 1067 2.358737 GCAGGTTGGAGGACGGTG 60.359 66.667 0.00 0.00 0.00 4.94
674 1068 2.526873 AGCAGGTTGGAGGACGGT 60.527 61.111 0.00 0.00 0.00 4.83
675 1069 2.266055 GAGCAGGTTGGAGGACGG 59.734 66.667 0.00 0.00 0.00 4.79
676 1070 1.903877 ATGGAGCAGGTTGGAGGACG 61.904 60.000 0.00 0.00 0.00 4.79
677 1071 0.107459 GATGGAGCAGGTTGGAGGAC 60.107 60.000 0.00 0.00 0.00 3.85
721 1115 4.899239 GGCCGTCGGATGCTGGAG 62.899 72.222 17.49 0.00 0.00 3.86
739 1133 1.314730 GACGTGTTTGGGTTGATGGT 58.685 50.000 0.00 0.00 0.00 3.55
747 1141 1.063469 GTGTTCTGTGACGTGTTTGGG 59.937 52.381 0.00 0.00 0.00 4.12
765 1159 9.840427 AAGATTTTATTATGTTGGTTTCTCGTG 57.160 29.630 0.00 0.00 0.00 4.35
788 1182 7.004086 AGTTGAATCTTTGGTTGTGGATAAGA 58.996 34.615 0.00 0.00 0.00 2.10
812 1206 4.216687 TGGCGTTAATTTTGGGTCAGTTAG 59.783 41.667 0.00 0.00 0.00 2.34
813 1207 4.023021 GTGGCGTTAATTTTGGGTCAGTTA 60.023 41.667 0.00 0.00 0.00 2.24
816 1210 2.667171 CGTGGCGTTAATTTTGGGTCAG 60.667 50.000 0.00 0.00 0.00 3.51
817 1211 1.267261 CGTGGCGTTAATTTTGGGTCA 59.733 47.619 0.00 0.00 0.00 4.02
818 1212 1.401800 CCGTGGCGTTAATTTTGGGTC 60.402 52.381 0.00 0.00 0.00 4.46
819 1213 0.599060 CCGTGGCGTTAATTTTGGGT 59.401 50.000 0.00 0.00 0.00 4.51
823 1217 5.373981 TTGTTATCCGTGGCGTTAATTTT 57.626 34.783 0.00 0.00 0.00 1.82
826 1220 5.007921 GGTTATTGTTATCCGTGGCGTTAAT 59.992 40.000 0.00 0.00 0.00 1.40
827 1221 4.332268 GGTTATTGTTATCCGTGGCGTTAA 59.668 41.667 0.00 0.00 0.00 2.01
828 1222 3.870419 GGTTATTGTTATCCGTGGCGTTA 59.130 43.478 0.00 0.00 0.00 3.18
829 1223 2.679336 GGTTATTGTTATCCGTGGCGTT 59.321 45.455 0.00 0.00 0.00 4.84
830 1224 2.282407 GGTTATTGTTATCCGTGGCGT 58.718 47.619 0.00 0.00 0.00 5.68
831 1225 1.600485 GGGTTATTGTTATCCGTGGCG 59.400 52.381 0.00 0.00 0.00 5.69
832 1226 1.600485 CGGGTTATTGTTATCCGTGGC 59.400 52.381 0.00 0.00 36.38 5.01
833 1227 2.158928 TCCGGGTTATTGTTATCCGTGG 60.159 50.000 0.00 0.00 39.13 4.94
834 1228 3.128349 CTCCGGGTTATTGTTATCCGTG 58.872 50.000 0.00 0.00 39.13 4.94
835 1229 2.103601 CCTCCGGGTTATTGTTATCCGT 59.896 50.000 0.00 0.00 39.13 4.69
836 1230 2.762745 CCTCCGGGTTATTGTTATCCG 58.237 52.381 0.00 0.00 40.32 4.18
837 1231 2.501261 GCCTCCGGGTTATTGTTATCC 58.499 52.381 0.00 0.00 34.45 2.59
838 1232 2.501261 GGCCTCCGGGTTATTGTTATC 58.499 52.381 0.00 0.00 34.45 1.75
839 1233 1.202722 CGGCCTCCGGGTTATTGTTAT 60.203 52.381 0.00 0.00 44.15 1.89
840 1234 0.178533 CGGCCTCCGGGTTATTGTTA 59.821 55.000 0.00 0.00 44.15 2.41
841 1235 1.078001 CGGCCTCCGGGTTATTGTT 60.078 57.895 0.00 0.00 44.15 2.83
842 1236 2.587889 CGGCCTCCGGGTTATTGT 59.412 61.111 0.00 0.00 44.15 2.71
878 1272 4.278310 GCATGGTAAATTTAGTCCAGGGT 58.722 43.478 16.65 0.00 33.22 4.34
916 1310 2.769663 ACGGCTTTTCCCTTTTTCCTTT 59.230 40.909 0.00 0.00 0.00 3.11
918 1312 2.082140 ACGGCTTTTCCCTTTTTCCT 57.918 45.000 0.00 0.00 0.00 3.36
926 1320 5.106078 TGTCACAAATATTACGGCTTTTCCC 60.106 40.000 0.00 0.00 0.00 3.97
927 1321 5.945155 TGTCACAAATATTACGGCTTTTCC 58.055 37.500 0.00 0.00 0.00 3.13
928 1322 7.861176 TTTGTCACAAATATTACGGCTTTTC 57.139 32.000 0.00 0.00 0.00 2.29
929 1323 8.825667 AATTTGTCACAAATATTACGGCTTTT 57.174 26.923 16.23 0.00 0.00 2.27
930 1324 9.349145 GTAATTTGTCACAAATATTACGGCTTT 57.651 29.630 16.23 0.33 0.00 3.51
931 1325 7.694784 CGTAATTTGTCACAAATATTACGGCTT 59.305 33.333 27.04 11.30 44.81 4.35
933 1327 7.181418 TCGTAATTTGTCACAAATATTACGGC 58.819 34.615 30.49 13.24 46.76 5.68
934 1328 8.597227 TCTCGTAATTTGTCACAAATATTACGG 58.403 33.333 30.49 24.51 46.76 4.02
939 1333 8.405531 CCCATTCTCGTAATTTGTCACAAATAT 58.594 33.333 16.23 9.16 0.00 1.28
940 1334 7.627513 GCCCATTCTCGTAATTTGTCACAAATA 60.628 37.037 16.23 0.00 0.00 1.40
941 1335 6.620678 CCCATTCTCGTAATTTGTCACAAAT 58.379 36.000 10.14 10.14 0.00 2.32
942 1336 5.563867 GCCCATTCTCGTAATTTGTCACAAA 60.564 40.000 5.18 5.18 0.00 2.83
943 1337 4.083003 GCCCATTCTCGTAATTTGTCACAA 60.083 41.667 0.00 0.00 0.00 3.33
944 1338 3.438781 GCCCATTCTCGTAATTTGTCACA 59.561 43.478 0.00 0.00 0.00 3.58
945 1339 3.181500 GGCCCATTCTCGTAATTTGTCAC 60.181 47.826 0.00 0.00 0.00 3.67
946 1340 3.013921 GGCCCATTCTCGTAATTTGTCA 58.986 45.455 0.00 0.00 0.00 3.58
947 1341 3.279434 AGGCCCATTCTCGTAATTTGTC 58.721 45.455 0.00 0.00 0.00 3.18
1071 1505 3.976490 ATTGGGACGCGGAGGAGGA 62.976 63.158 12.47 0.00 0.00 3.71
1114 1548 3.912745 GATTTGTGTCGGGGCGGGT 62.913 63.158 0.00 0.00 0.00 5.28
1178 1613 3.441011 GAATCGGGCGTGACGGGAT 62.441 63.158 7.25 0.00 0.00 3.85
1213 1652 2.203084 TCCAAGAACGGCGTTGCA 60.203 55.556 31.90 0.00 0.00 4.08
1556 2024 2.825836 CTCTTCCCATGCCACGGC 60.826 66.667 0.00 0.00 42.35 5.68
1557 2025 2.124570 CCTCTTCCCATGCCACGG 60.125 66.667 0.00 0.00 0.00 4.94
1558 2026 1.153289 CTCCTCTTCCCATGCCACG 60.153 63.158 0.00 0.00 0.00 4.94
1559 2027 0.329596 AACTCCTCTTCCCATGCCAC 59.670 55.000 0.00 0.00 0.00 5.01
1560 2028 0.620556 GAACTCCTCTTCCCATGCCA 59.379 55.000 0.00 0.00 0.00 4.92
1561 2029 0.462759 CGAACTCCTCTTCCCATGCC 60.463 60.000 0.00 0.00 0.00 4.40
1562 2030 0.537188 TCGAACTCCTCTTCCCATGC 59.463 55.000 0.00 0.00 0.00 4.06
1563 2031 1.137872 CCTCGAACTCCTCTTCCCATG 59.862 57.143 0.00 0.00 0.00 3.66
1564 2032 1.007238 TCCTCGAACTCCTCTTCCCAT 59.993 52.381 0.00 0.00 0.00 4.00
1570 2038 0.961358 CCACGTCCTCGAACTCCTCT 60.961 60.000 0.00 0.00 40.62 3.69
1650 2118 2.493675 CTCACATTGAGGACGGAGAAGA 59.506 50.000 0.00 0.00 40.71 2.87
1739 2224 3.438781 TCCAATTACGTCAAGAACATGCC 59.561 43.478 0.00 0.00 0.00 4.40
1741 2226 5.290885 TCGATCCAATTACGTCAAGAACATG 59.709 40.000 0.00 0.00 0.00 3.21
1777 2266 2.031683 GCGGGTGGATAAATCGTCAAAG 59.968 50.000 0.00 0.00 0.00 2.77
1789 2278 1.665442 GCACAAAAAGCGGGTGGAT 59.335 52.632 0.00 0.00 33.25 3.41
1799 2288 1.201181 CAATCGGGATCGGCACAAAAA 59.799 47.619 0.00 0.00 36.95 1.94
1800 2289 0.808125 CAATCGGGATCGGCACAAAA 59.192 50.000 0.00 0.00 36.95 2.44
1812 2301 2.079158 CGATGATCCAATCCAATCGGG 58.921 52.381 2.35 0.00 38.37 5.14
1814 2303 2.079158 CCCGATGATCCAATCCAATCG 58.921 52.381 3.14 3.14 0.00 3.34
1819 2308 4.887655 ACTTTTAACCCGATGATCCAATCC 59.112 41.667 0.00 0.00 0.00 3.01
1831 2320 1.660896 CCACGCGAAACTTTTAACCCG 60.661 52.381 15.93 0.00 0.00 5.28
1989 2480 5.127845 TGTTGTAAAAGGCAAGATCCAAACA 59.872 36.000 0.00 0.00 0.00 2.83
2126 2621 8.007716 CACTGCTTGCATATTTTTCAGAAAAAG 58.992 33.333 22.44 12.57 42.97 2.27
2194 2689 6.969473 GCAGAAAAGTGGCTAAGATCAATAAC 59.031 38.462 0.00 0.00 0.00 1.89
2353 2849 5.243283 ACCTAGACAAACATATACCGGCTAG 59.757 44.000 0.00 0.00 0.00 3.42
2359 2855 7.042797 TCGGTTACCTAGACAAACATATACC 57.957 40.000 0.00 0.00 0.00 2.73
2395 2891 5.353394 AATCGACAGCTAGGGTTTCATAA 57.647 39.130 0.00 0.00 0.00 1.90
2403 2899 7.155328 ACTTATCATTAAATCGACAGCTAGGG 58.845 38.462 0.00 0.00 0.00 3.53
2513 3009 7.062749 AGCCCGACAAGAGTATAATTAATCA 57.937 36.000 0.00 0.00 0.00 2.57
2616 3112 3.200483 GTGTCGGTGTTTGTCTAAAGGT 58.800 45.455 0.00 0.00 0.00 3.50
2849 3345 2.526432 ACAGTAGAGGGTATATGGCGG 58.474 52.381 0.00 0.00 0.00 6.13
2965 3461 0.883833 CAAAACCAGTAGCCTGCCAG 59.116 55.000 0.00 0.00 37.38 4.85
3026 3527 1.279496 AACTGGTAGCCTGCTCATGA 58.721 50.000 0.00 0.00 0.00 3.07
3079 3581 6.498304 TCAAAAGAAGATGCAAAGTGTTCTC 58.502 36.000 0.00 0.00 29.93 2.87
3150 3653 7.669427 TGAATCCTGCAACAATAGAAACAAAT 58.331 30.769 0.00 0.00 0.00 2.32
3197 3700 5.048083 TCAGTGATGCAGTTCCCAAAATTAC 60.048 40.000 0.00 0.00 0.00 1.89
3224 3727 4.697514 GCAGGAGATGTGTAATCTGCTAA 58.302 43.478 8.76 0.00 43.51 3.09
3242 3745 3.947868 TCTCAATTTCCTCTTCAGCAGG 58.052 45.455 0.00 0.00 0.00 4.85
3373 3877 5.004922 TGGTGTTCCAATGAGAAAACAAC 57.995 39.130 6.96 0.00 41.25 3.32
3406 3910 7.034685 ACAGTAATTAACAAACTGGTTGACC 57.965 36.000 13.22 0.00 43.91 4.02
3788 4292 1.595109 CACAGACTGCAGCGAACCA 60.595 57.895 15.27 0.00 0.00 3.67
4103 4607 7.005709 AGATATGAAAGAAATAGGTACCCCG 57.994 40.000 8.74 0.00 35.12 5.73
4195 4699 1.107114 AACGATGGTGCCACAAAACA 58.893 45.000 0.00 0.00 0.00 2.83
4483 4987 0.322816 ACTGTGAGCGGATTGGCATT 60.323 50.000 0.00 0.00 34.64 3.56
4577 5081 2.807967 CAAGATCAAAGTGCTTGTCGGA 59.192 45.455 0.00 0.00 36.34 4.55
4917 5424 2.362077 GGCTCTTTGTGAATTGTGGTGT 59.638 45.455 0.00 0.00 0.00 4.16
5035 5545 2.673341 ACGAGCACGCTCTCCTCA 60.673 61.111 16.51 0.00 43.96 3.86
5122 5635 0.745845 CCTTCTTGATGTCGGCCTGG 60.746 60.000 0.00 0.00 0.00 4.45
5284 5800 1.383799 CAGGGGAAACTCCATGGCA 59.616 57.895 6.96 0.00 38.64 4.92
5362 5878 7.885922 TCTCTCTCTCTCTGTATGTTAAACACT 59.114 37.037 0.00 0.00 0.00 3.55
5364 5880 8.103935 TCTCTCTCTCTCTCTGTATGTTAAACA 58.896 37.037 0.00 0.00 0.00 2.83
5405 5935 3.860641 CTGAAAAAGGAGGCTCTCTCTC 58.139 50.000 15.23 5.92 42.10 3.20
5406 5936 3.979101 CTGAAAAAGGAGGCTCTCTCT 57.021 47.619 15.23 0.00 42.10 3.10
5438 5968 0.531200 ATCTTCGACCCGGTTCACTC 59.469 55.000 0.00 0.00 0.00 3.51
5569 6112 3.757745 AAGTGAAGGAAAACACACACG 57.242 42.857 0.00 0.00 39.18 4.49
5597 6140 1.434773 AGCTCCTCCCATCATAGCCTA 59.565 52.381 0.00 0.00 33.63 3.93
5659 6203 3.559655 CACAACTCAATTCAGGACGACAA 59.440 43.478 0.00 0.00 0.00 3.18
5751 6302 3.108376 AGGTAAACATCTCAGGAGGGAC 58.892 50.000 0.00 0.00 0.00 4.46
5752 6303 3.491766 AGGTAAACATCTCAGGAGGGA 57.508 47.619 0.00 0.00 0.00 4.20
5754 6305 4.442192 GCAGTAGGTAAACATCTCAGGAGG 60.442 50.000 0.00 0.00 0.00 4.30
5755 6306 4.404073 AGCAGTAGGTAAACATCTCAGGAG 59.596 45.833 0.00 0.00 0.00 3.69
5758 6309 6.166279 TGAAAGCAGTAGGTAAACATCTCAG 58.834 40.000 0.00 0.00 0.00 3.35
5760 6311 6.654793 CTGAAAGCAGTAGGTAAACATCTC 57.345 41.667 0.00 0.00 37.37 2.75
5781 6341 6.038161 TGTGAAACTGGAGAACATGTAAACTG 59.962 38.462 0.00 0.00 38.04 3.16
5784 6344 6.618287 CTGTGAAACTGGAGAACATGTAAA 57.382 37.500 0.00 0.00 38.04 2.01
5814 6386 4.772100 TGTCCCCTTCTTCAATCCAAATTC 59.228 41.667 0.00 0.00 0.00 2.17
5859 6431 9.249053 ACTTCCTTTCTTTCTTTCTTTCTTTCT 57.751 29.630 0.00 0.00 0.00 2.52
5860 6432 9.295214 CACTTCCTTTCTTTCTTTCTTTCTTTC 57.705 33.333 0.00 0.00 0.00 2.62
5872 6444 4.821805 TCACATGTCCACTTCCTTTCTTTC 59.178 41.667 0.00 0.00 0.00 2.62
6041 6648 2.359850 TTCCCTGTCATGCACCGC 60.360 61.111 0.00 0.00 0.00 5.68
6061 6668 1.213678 ACATCTGTGGTGGATGGGATG 59.786 52.381 8.27 0.00 43.25 3.51
6077 6684 5.795441 GCACTCGTCCAAAAAGAAATACATC 59.205 40.000 0.00 0.00 0.00 3.06
6095 6708 2.807045 GCTCACCTGTCGCACTCG 60.807 66.667 0.00 0.00 0.00 4.18
6305 6940 7.785028 AGGAGTTGTATCTACAGGTCAATATGA 59.215 37.037 0.00 0.00 37.52 2.15
6309 6944 6.324254 GGTAGGAGTTGTATCTACAGGTCAAT 59.676 42.308 0.00 0.00 37.52 2.57
6310 6945 5.655532 GGTAGGAGTTGTATCTACAGGTCAA 59.344 44.000 0.00 0.00 37.52 3.18
6311 6946 5.198965 GGTAGGAGTTGTATCTACAGGTCA 58.801 45.833 0.00 0.00 37.52 4.02
6312 6947 5.198965 TGGTAGGAGTTGTATCTACAGGTC 58.801 45.833 0.00 0.00 37.52 3.85
6313 6948 5.202746 TGGTAGGAGTTGTATCTACAGGT 57.797 43.478 0.00 0.00 37.52 4.00
6314 6949 6.540438 TTTGGTAGGAGTTGTATCTACAGG 57.460 41.667 0.00 0.00 37.52 4.00
6315 6950 9.099454 GAATTTTGGTAGGAGTTGTATCTACAG 57.901 37.037 0.00 0.00 37.52 2.74
6316 6951 8.822805 AGAATTTTGGTAGGAGTTGTATCTACA 58.177 33.333 0.00 0.00 36.14 2.74
6319 6954 9.668497 GTTAGAATTTTGGTAGGAGTTGTATCT 57.332 33.333 0.00 0.00 0.00 1.98
6320 6955 8.890718 GGTTAGAATTTTGGTAGGAGTTGTATC 58.109 37.037 0.00 0.00 0.00 2.24
6321 6956 8.387813 TGGTTAGAATTTTGGTAGGAGTTGTAT 58.612 33.333 0.00 0.00 0.00 2.29
6322 6957 7.747690 TGGTTAGAATTTTGGTAGGAGTTGTA 58.252 34.615 0.00 0.00 0.00 2.41
6323 6958 6.607019 TGGTTAGAATTTTGGTAGGAGTTGT 58.393 36.000 0.00 0.00 0.00 3.32
6324 6959 7.703058 ATGGTTAGAATTTTGGTAGGAGTTG 57.297 36.000 0.00 0.00 0.00 3.16
6325 6960 8.170730 AGAATGGTTAGAATTTTGGTAGGAGTT 58.829 33.333 0.00 0.00 0.00 3.01
6326 6961 7.699878 AGAATGGTTAGAATTTTGGTAGGAGT 58.300 34.615 0.00 0.00 0.00 3.85
6327 6962 9.681062 TTAGAATGGTTAGAATTTTGGTAGGAG 57.319 33.333 0.00 0.00 0.00 3.69
6328 6963 9.457436 GTTAGAATGGTTAGAATTTTGGTAGGA 57.543 33.333 0.00 0.00 0.00 2.94
6329 6964 9.238368 TGTTAGAATGGTTAGAATTTTGGTAGG 57.762 33.333 0.00 0.00 0.00 3.18
6332 6967 8.919145 TGTTGTTAGAATGGTTAGAATTTTGGT 58.081 29.630 0.00 0.00 0.00 3.67
6333 6968 9.410556 CTGTTGTTAGAATGGTTAGAATTTTGG 57.589 33.333 0.00 0.00 0.00 3.28
6334 6969 9.410556 CCTGTTGTTAGAATGGTTAGAATTTTG 57.589 33.333 0.00 0.00 0.00 2.44
6335 6970 9.362151 TCCTGTTGTTAGAATGGTTAGAATTTT 57.638 29.630 0.00 0.00 0.00 1.82
6336 6971 8.934023 TCCTGTTGTTAGAATGGTTAGAATTT 57.066 30.769 0.00 0.00 0.00 1.82
6337 6972 9.178758 GATCCTGTTGTTAGAATGGTTAGAATT 57.821 33.333 0.00 0.00 0.00 2.17
6338 6973 7.775561 GGATCCTGTTGTTAGAATGGTTAGAAT 59.224 37.037 3.84 0.00 0.00 2.40
6339 6974 7.110155 GGATCCTGTTGTTAGAATGGTTAGAA 58.890 38.462 3.84 0.00 0.00 2.10
6340 6975 6.629515 CGGATCCTGTTGTTAGAATGGTTAGA 60.630 42.308 10.75 0.00 0.00 2.10
6341 6976 5.523916 CGGATCCTGTTGTTAGAATGGTTAG 59.476 44.000 10.75 0.00 0.00 2.34
6342 6977 5.424757 CGGATCCTGTTGTTAGAATGGTTA 58.575 41.667 10.75 0.00 0.00 2.85
6343 6978 4.261801 CGGATCCTGTTGTTAGAATGGTT 58.738 43.478 10.75 0.00 0.00 3.67
6344 6979 3.370527 CCGGATCCTGTTGTTAGAATGGT 60.371 47.826 10.75 0.00 0.00 3.55
6345 6980 3.118408 TCCGGATCCTGTTGTTAGAATGG 60.118 47.826 10.75 0.00 0.00 3.16
6346 6981 4.137116 TCCGGATCCTGTTGTTAGAATG 57.863 45.455 10.75 0.00 0.00 2.67
6347 6982 4.837093 TTCCGGATCCTGTTGTTAGAAT 57.163 40.909 4.15 0.00 0.00 2.40
6348 6983 4.627284 TTTCCGGATCCTGTTGTTAGAA 57.373 40.909 4.15 0.00 0.00 2.10
6349 6984 4.627284 TTTTCCGGATCCTGTTGTTAGA 57.373 40.909 4.15 0.00 0.00 2.10
6350 6985 4.096382 CCATTTTCCGGATCCTGTTGTTAG 59.904 45.833 4.15 0.00 0.00 2.34
6351 6986 4.013728 CCATTTTCCGGATCCTGTTGTTA 58.986 43.478 4.15 0.00 0.00 2.41
6352 6987 2.825532 CCATTTTCCGGATCCTGTTGTT 59.174 45.455 4.15 0.00 0.00 2.83
6353 6988 2.446435 CCATTTTCCGGATCCTGTTGT 58.554 47.619 4.15 0.00 0.00 3.32
6354 6989 1.134946 GCCATTTTCCGGATCCTGTTG 59.865 52.381 4.15 0.00 0.00 3.33
6355 6990 1.005924 AGCCATTTTCCGGATCCTGTT 59.994 47.619 4.15 0.00 0.00 3.16
6356 6991 0.625849 AGCCATTTTCCGGATCCTGT 59.374 50.000 4.15 0.00 0.00 4.00
6357 6992 1.027357 CAGCCATTTTCCGGATCCTG 58.973 55.000 4.15 2.93 0.00 3.86
6358 6993 0.918983 TCAGCCATTTTCCGGATCCT 59.081 50.000 4.15 0.00 0.00 3.24
6359 6994 1.312815 CTCAGCCATTTTCCGGATCC 58.687 55.000 4.15 0.00 0.00 3.36
6360 6995 0.665298 GCTCAGCCATTTTCCGGATC 59.335 55.000 4.15 0.00 0.00 3.36
6361 6996 0.257039 AGCTCAGCCATTTTCCGGAT 59.743 50.000 4.15 0.00 0.00 4.18
6362 6997 0.677731 CAGCTCAGCCATTTTCCGGA 60.678 55.000 0.00 0.00 0.00 5.14
6363 6998 0.677731 TCAGCTCAGCCATTTTCCGG 60.678 55.000 0.00 0.00 0.00 5.14
6364 6999 1.167851 TTCAGCTCAGCCATTTTCCG 58.832 50.000 0.00 0.00 0.00 4.30
6365 7000 3.243839 TGTTTTCAGCTCAGCCATTTTCC 60.244 43.478 0.00 0.00 0.00 3.13
6366 7001 3.981211 TGTTTTCAGCTCAGCCATTTTC 58.019 40.909 0.00 0.00 0.00 2.29
6367 7002 4.405116 TTGTTTTCAGCTCAGCCATTTT 57.595 36.364 0.00 0.00 0.00 1.82
6368 7003 4.405116 TTTGTTTTCAGCTCAGCCATTT 57.595 36.364 0.00 0.00 0.00 2.32
6369 7004 4.122046 GTTTTGTTTTCAGCTCAGCCATT 58.878 39.130 0.00 0.00 0.00 3.16
6370 7005 3.132646 TGTTTTGTTTTCAGCTCAGCCAT 59.867 39.130 0.00 0.00 0.00 4.40
6371 7006 2.495270 TGTTTTGTTTTCAGCTCAGCCA 59.505 40.909 0.00 0.00 0.00 4.75
6405 7041 2.658285 CTTGCTTTACTTGCTGCACTG 58.342 47.619 0.00 0.47 35.01 3.66
6502 7139 5.067805 AGGAGTTTTTACAGGAACTTTGCAG 59.932 40.000 0.00 0.00 34.60 4.41
6509 7160 6.947644 TTTGGTAGGAGTTTTTACAGGAAC 57.052 37.500 0.00 0.00 0.00 3.62
6511 7162 8.002459 AGATTTTTGGTAGGAGTTTTTACAGGA 58.998 33.333 0.00 0.00 0.00 3.86
6512 7163 8.178313 AGATTTTTGGTAGGAGTTTTTACAGG 57.822 34.615 0.00 0.00 0.00 4.00
6517 7168 9.197306 ACAGTTAGATTTTTGGTAGGAGTTTTT 57.803 29.630 0.00 0.00 0.00 1.94
6518 7169 8.762481 ACAGTTAGATTTTTGGTAGGAGTTTT 57.238 30.769 0.00 0.00 0.00 2.43
6519 7170 8.762481 AACAGTTAGATTTTTGGTAGGAGTTT 57.238 30.769 0.00 0.00 0.00 2.66
6520 7171 8.218488 AGAACAGTTAGATTTTTGGTAGGAGTT 58.782 33.333 0.00 0.00 0.00 3.01
6521 7172 7.746703 AGAACAGTTAGATTTTTGGTAGGAGT 58.253 34.615 0.00 0.00 0.00 3.85
6522 7173 9.720769 TTAGAACAGTTAGATTTTTGGTAGGAG 57.279 33.333 0.00 0.00 0.00 3.69
6541 7192 5.560722 TTCCAGATCCTGTTGTTAGAACA 57.439 39.130 0.00 0.00 37.08 3.18
6552 7203 3.380637 CCTCTGCATTTTTCCAGATCCTG 59.619 47.826 0.00 0.00 37.45 3.86
6562 7213 4.956085 GTTGGTAAACCCTCTGCATTTTT 58.044 39.130 0.00 0.00 34.29 1.94
6714 7675 1.367471 GAGCACACAAAAAGCCCCC 59.633 57.895 0.00 0.00 0.00 5.40
6715 7676 0.463620 TTGAGCACACAAAAAGCCCC 59.536 50.000 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.