Multiple sequence alignment - TraesCS5D01G033600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G033600 chr5D 100.000 2950 0 0 1 2950 32155976 32158925 0.000000e+00 5448.0
1 TraesCS5D01G033600 chr5D 87.009 331 40 3 2141 2471 286475054 286475381 1.290000e-98 370.0
2 TraesCS5D01G033600 chr5D 86.890 328 38 3 2139 2466 94024109 94024431 2.160000e-96 363.0
3 TraesCS5D01G033600 chr5B 94.853 1943 58 12 1 1920 23891086 23893009 0.000000e+00 2996.0
4 TraesCS5D01G033600 chr5B 86.879 503 41 10 2462 2950 23997251 23997742 9.300000e-150 540.0
5 TraesCS5D01G033600 chr5B 87.805 328 33 2 2139 2466 101321150 101321470 7.720000e-101 377.0
6 TraesCS5D01G033600 chr5B 92.694 219 11 5 1927 2143 23997041 23997256 7.940000e-81 311.0
7 TraesCS5D01G033600 chr5A 93.838 1980 71 25 1 1954 20821567 20823521 0.000000e+00 2933.0
8 TraesCS5D01G033600 chr5A 87.956 274 22 4 2462 2728 20824885 20825154 2.210000e-81 313.0
9 TraesCS5D01G033600 chr5A 79.508 122 22 2 2831 2950 25098543 25098423 1.880000e-12 84.2
10 TraesCS5D01G033600 chr6B 90.712 323 28 1 2141 2463 144891371 144891691 2.100000e-116 429.0
11 TraesCS5D01G033600 chr3D 88.854 323 34 2 2143 2465 524172853 524173173 2.130000e-106 396.0
12 TraesCS5D01G033600 chr3B 86.810 326 40 2 2142 2467 252811326 252811004 7.770000e-96 361.0
13 TraesCS5D01G033600 chr1D 87.077 325 33 8 2141 2463 468865908 468866225 2.800000e-95 359.0
14 TraesCS5D01G033600 chr1D 85.976 328 40 6 2141 2466 418644625 418644948 2.180000e-91 346.0
15 TraesCS5D01G033600 chr7A 85.373 335 44 3 2132 2463 637836251 637835919 2.820000e-90 342.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G033600 chr5D 32155976 32158925 2949 False 5448.0 5448 100.0000 1 2950 1 chr5D.!!$F1 2949
1 TraesCS5D01G033600 chr5B 23891086 23893009 1923 False 2996.0 2996 94.8530 1 1920 1 chr5B.!!$F1 1919
2 TraesCS5D01G033600 chr5B 23997041 23997742 701 False 425.5 540 89.7865 1927 2950 2 chr5B.!!$F3 1023
3 TraesCS5D01G033600 chr5A 20821567 20825154 3587 False 1623.0 2933 90.8970 1 2728 2 chr5A.!!$F1 2727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 452 1.774046 GAGGATCCTCCGTCGTCGTC 61.774 65.0 28.84 2.46 42.75 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 3533 0.026285 ATTGTGAAGCGCGCGTAATC 59.974 50.0 32.35 24.93 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.080319 GAGCCTGATGAACTTGCTCTTT 58.920 45.455 0.00 0.00 43.85 2.52
274 275 2.959357 GCTGTCCTTCTGCACGCAC 61.959 63.158 0.00 0.00 40.09 5.34
275 276 2.661537 TGTCCTTCTGCACGCACG 60.662 61.111 0.00 0.00 0.00 5.34
276 277 4.077188 GTCCTTCTGCACGCACGC 62.077 66.667 0.00 0.00 0.00 5.34
277 278 4.600576 TCCTTCTGCACGCACGCA 62.601 61.111 0.00 0.00 40.32 5.24
278 279 3.425713 CCTTCTGCACGCACGCAT 61.426 61.111 0.00 0.00 42.06 4.73
279 280 2.202260 CTTCTGCACGCACGCATG 60.202 61.111 0.00 0.00 42.06 4.06
398 399 1.888436 ATGATCTCACACCACCGCGT 61.888 55.000 4.92 0.00 0.00 6.01
449 450 3.023950 GAGGATCCTCCGTCGTCG 58.976 66.667 28.84 0.00 42.75 5.12
450 451 1.818785 GAGGATCCTCCGTCGTCGT 60.819 63.158 28.84 0.00 42.75 4.34
451 452 1.774046 GAGGATCCTCCGTCGTCGTC 61.774 65.000 28.84 2.46 42.75 4.20
513 514 2.124320 AATGGATGGCGAACCCGG 60.124 61.111 0.00 0.00 35.87 5.73
862 880 3.478394 CACGGTGATGGTGTCGCG 61.478 66.667 0.74 0.00 38.25 5.87
873 891 4.415332 TGTCGCGGCGGAGACTTC 62.415 66.667 23.46 3.88 42.66 3.01
1163 1199 4.373116 GTCGGTGGAGAAGGCGCA 62.373 66.667 10.83 0.00 0.00 6.09
1284 1320 2.202676 CTTGAGCTCGCCGTCCTC 60.203 66.667 9.64 0.99 0.00 3.71
1476 1515 1.671901 CGGAGGAGGAAGAGGAGCAC 61.672 65.000 0.00 0.00 0.00 4.40
1793 1833 5.463392 GTGTTTCTCTTCTCCCAAATTTTGC 59.537 40.000 3.50 0.00 0.00 3.68
1865 1905 2.843401 TACATAAACACGGTGCACCT 57.157 45.000 32.28 16.67 0.00 4.00
1877 1917 2.484594 CGGTGCACCTTTTCCCAAATTT 60.485 45.455 32.28 0.00 0.00 1.82
1971 3198 6.411630 AATGGATGCAATTGAAATGAAACG 57.588 33.333 10.34 0.00 0.00 3.60
1972 3199 4.880759 TGGATGCAATTGAAATGAAACGT 58.119 34.783 10.34 0.00 0.00 3.99
1973 3200 6.018589 TGGATGCAATTGAAATGAAACGTA 57.981 33.333 10.34 0.00 0.00 3.57
2078 3307 7.132694 TGTCTAGTGCAAACAATTGATAGTG 57.867 36.000 13.59 5.37 38.94 2.74
2122 3352 2.571212 ACCTTGCACGAATCTCAACAA 58.429 42.857 0.00 0.00 0.00 2.83
2136 3366 3.253921 TCTCAACAATACTCGGTGTCGAA 59.746 43.478 0.00 0.00 45.47 3.71
2137 3367 3.311106 TCAACAATACTCGGTGTCGAAC 58.689 45.455 0.00 0.00 45.47 3.95
2138 3368 3.005050 TCAACAATACTCGGTGTCGAACT 59.995 43.478 0.00 0.00 45.47 3.01
2139 3369 4.216042 TCAACAATACTCGGTGTCGAACTA 59.784 41.667 0.00 0.00 45.47 2.24
2140 3370 4.771590 ACAATACTCGGTGTCGAACTAA 57.228 40.909 0.00 0.00 45.47 2.24
2141 3371 4.730657 ACAATACTCGGTGTCGAACTAAG 58.269 43.478 0.00 0.00 45.47 2.18
2142 3372 4.456911 ACAATACTCGGTGTCGAACTAAGA 59.543 41.667 0.00 0.00 45.47 2.10
2143 3373 4.879104 ATACTCGGTGTCGAACTAAGAG 57.121 45.455 0.00 0.00 45.47 2.85
2144 3374 1.199558 ACTCGGTGTCGAACTAAGAGC 59.800 52.381 0.00 0.00 45.47 4.09
2145 3375 1.199327 CTCGGTGTCGAACTAAGAGCA 59.801 52.381 0.00 0.00 45.47 4.26
2146 3376 1.816835 TCGGTGTCGAACTAAGAGCAT 59.183 47.619 0.00 0.00 43.03 3.79
2147 3377 2.159421 TCGGTGTCGAACTAAGAGCATC 60.159 50.000 0.00 0.00 43.03 3.91
2148 3378 2.159366 CGGTGTCGAACTAAGAGCATCT 60.159 50.000 0.00 0.00 44.11 2.90
2149 3379 4.031860 CGGTGTCGAACTAAGAGCATCTC 61.032 52.174 0.00 0.00 41.98 2.75
2158 3388 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
2159 3389 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
2160 3390 3.512516 GCATCTCCAACAGGCGCC 61.513 66.667 21.89 21.89 0.00 6.53
2161 3391 2.825836 CATCTCCAACAGGCGCCC 60.826 66.667 26.15 5.07 0.00 6.13
2162 3392 3.329889 ATCTCCAACAGGCGCCCA 61.330 61.111 26.15 0.00 0.00 5.36
2163 3393 2.905996 ATCTCCAACAGGCGCCCAA 61.906 57.895 26.15 0.88 0.00 4.12
2164 3394 2.424842 ATCTCCAACAGGCGCCCAAA 62.425 55.000 26.15 1.70 0.00 3.28
2165 3395 2.123683 TCCAACAGGCGCCCAAAA 60.124 55.556 26.15 0.41 0.00 2.44
2166 3396 1.743321 CTCCAACAGGCGCCCAAAAA 61.743 55.000 26.15 3.57 0.00 1.94
2167 3397 1.300853 CCAACAGGCGCCCAAAAAG 60.301 57.895 26.15 8.61 0.00 2.27
2168 3398 1.739049 CAACAGGCGCCCAAAAAGA 59.261 52.632 26.15 0.00 0.00 2.52
2169 3399 0.318955 CAACAGGCGCCCAAAAAGAG 60.319 55.000 26.15 5.50 0.00 2.85
2170 3400 2.087462 AACAGGCGCCCAAAAAGAGC 62.087 55.000 26.15 0.00 0.00 4.09
2171 3401 2.116125 AGGCGCCCAAAAAGAGCT 59.884 55.556 26.15 0.00 0.00 4.09
2172 3402 1.973812 AGGCGCCCAAAAAGAGCTC 60.974 57.895 26.15 5.27 0.00 4.09
2173 3403 1.973812 GGCGCCCAAAAAGAGCTCT 60.974 57.895 18.11 11.45 0.00 4.09
2174 3404 1.211190 GCGCCCAAAAAGAGCTCTG 59.789 57.895 19.06 5.25 0.00 3.35
2175 3405 1.518903 GCGCCCAAAAAGAGCTCTGT 61.519 55.000 19.06 9.37 0.00 3.41
2176 3406 0.239347 CGCCCAAAAAGAGCTCTGTG 59.761 55.000 19.06 15.34 0.00 3.66
2177 3407 0.038801 GCCCAAAAAGAGCTCTGTGC 60.039 55.000 19.06 7.66 43.29 4.57
2217 3447 2.281484 GGTGCCGAACAGCTCCAA 60.281 61.111 0.01 0.00 44.17 3.53
2218 3448 1.675641 GGTGCCGAACAGCTCCAAT 60.676 57.895 0.01 0.00 44.17 3.16
2219 3449 0.392461 GGTGCCGAACAGCTCCAATA 60.392 55.000 0.01 0.00 44.17 1.90
2220 3450 1.009829 GTGCCGAACAGCTCCAATAG 58.990 55.000 0.00 0.00 0.00 1.73
2221 3451 0.901827 TGCCGAACAGCTCCAATAGA 59.098 50.000 0.00 0.00 0.00 1.98
2222 3452 1.486310 TGCCGAACAGCTCCAATAGAT 59.514 47.619 0.00 0.00 0.00 1.98
2224 3454 1.869767 CCGAACAGCTCCAATAGATGC 59.130 52.381 0.00 0.00 45.87 3.91
2225 3455 2.484417 CCGAACAGCTCCAATAGATGCT 60.484 50.000 0.00 0.00 45.87 3.79
2232 3462 6.630444 CAGCTCCAATAGATGCTGTAAAAT 57.370 37.500 0.00 0.00 45.31 1.82
2233 3463 7.734924 CAGCTCCAATAGATGCTGTAAAATA 57.265 36.000 0.00 0.00 45.31 1.40
2234 3464 8.332996 CAGCTCCAATAGATGCTGTAAAATAT 57.667 34.615 0.00 0.00 45.31 1.28
2235 3465 8.790718 CAGCTCCAATAGATGCTGTAAAATATT 58.209 33.333 0.00 0.00 45.31 1.28
2236 3466 8.790718 AGCTCCAATAGATGCTGTAAAATATTG 58.209 33.333 0.00 0.00 34.19 1.90
2237 3467 8.571336 GCTCCAATAGATGCTGTAAAATATTGT 58.429 33.333 0.00 0.00 31.68 2.71
2238 3468 9.888878 CTCCAATAGATGCTGTAAAATATTGTG 57.111 33.333 0.00 0.00 31.68 3.33
2239 3469 9.407380 TCCAATAGATGCTGTAAAATATTGTGT 57.593 29.630 0.00 0.00 31.68 3.72
2240 3470 9.454585 CCAATAGATGCTGTAAAATATTGTGTG 57.545 33.333 0.00 0.00 31.68 3.82
2241 3471 8.961092 CAATAGATGCTGTAAAATATTGTGTGC 58.039 33.333 0.00 0.00 0.00 4.57
2242 3472 5.572211 AGATGCTGTAAAATATTGTGTGCG 58.428 37.500 0.00 0.00 0.00 5.34
2243 3473 3.497118 TGCTGTAAAATATTGTGTGCGC 58.503 40.909 0.00 0.00 0.00 6.09
2244 3474 3.190327 TGCTGTAAAATATTGTGTGCGCT 59.810 39.130 9.73 0.00 0.00 5.92
2245 3475 4.393371 TGCTGTAAAATATTGTGTGCGCTA 59.607 37.500 9.73 0.00 0.00 4.26
2246 3476 5.106515 TGCTGTAAAATATTGTGTGCGCTAA 60.107 36.000 9.73 0.00 0.00 3.09
2247 3477 5.797934 GCTGTAAAATATTGTGTGCGCTAAA 59.202 36.000 9.73 0.00 0.00 1.85
2248 3478 6.306837 GCTGTAAAATATTGTGTGCGCTAAAA 59.693 34.615 9.73 0.00 0.00 1.52
2249 3479 7.148885 GCTGTAAAATATTGTGTGCGCTAAAAA 60.149 33.333 9.73 0.00 0.00 1.94
2250 3480 8.221801 TGTAAAATATTGTGTGCGCTAAAAAG 57.778 30.769 9.73 0.00 0.00 2.27
2251 3481 7.863375 TGTAAAATATTGTGTGCGCTAAAAAGT 59.137 29.630 9.73 0.00 0.00 2.66
2252 3482 7.707774 AAAATATTGTGTGCGCTAAAAAGTT 57.292 28.000 9.73 0.00 0.00 2.66
2253 3483 7.707774 AAATATTGTGTGCGCTAAAAAGTTT 57.292 28.000 9.73 2.76 0.00 2.66
2254 3484 7.707774 AATATTGTGTGCGCTAAAAAGTTTT 57.292 28.000 9.73 0.00 0.00 2.43
2255 3485 4.831741 TTGTGTGCGCTAAAAAGTTTTG 57.168 36.364 9.73 0.00 0.00 2.44
2256 3486 3.182967 TGTGTGCGCTAAAAAGTTTTGG 58.817 40.909 9.73 0.00 0.00 3.28
2257 3487 2.538037 GTGTGCGCTAAAAAGTTTTGGG 59.462 45.455 9.73 0.27 0.00 4.12
2258 3488 1.525197 GTGCGCTAAAAAGTTTTGGGC 59.475 47.619 9.73 16.26 37.49 5.36
2259 3489 1.137086 TGCGCTAAAAAGTTTTGGGCA 59.863 42.857 19.84 19.84 40.68 5.36
2260 3490 1.525197 GCGCTAAAAAGTTTTGGGCAC 59.475 47.619 17.51 9.29 37.24 5.01
2261 3491 1.784283 CGCTAAAAAGTTTTGGGCACG 59.216 47.619 19.06 9.49 33.26 5.34
2262 3492 1.525197 GCTAAAAAGTTTTGGGCACGC 59.475 47.619 16.11 5.12 33.60 5.34
2263 3493 1.784283 CTAAAAAGTTTTGGGCACGCG 59.216 47.619 3.53 3.53 0.00 6.01
2264 3494 1.425267 AAAAAGTTTTGGGCACGCGC 61.425 50.000 5.73 0.00 37.44 6.86
2265 3495 2.291457 AAAAGTTTTGGGCACGCGCT 62.291 50.000 5.73 0.00 38.60 5.92
2266 3496 2.291457 AAAGTTTTGGGCACGCGCTT 62.291 50.000 5.73 0.00 38.60 4.68
2267 3497 1.448922 AAGTTTTGGGCACGCGCTTA 61.449 50.000 5.73 0.00 38.60 3.09
2268 3498 1.008309 GTTTTGGGCACGCGCTTAA 60.008 52.632 5.73 0.00 38.60 1.85
2269 3499 0.595310 GTTTTGGGCACGCGCTTAAA 60.595 50.000 5.73 0.00 38.60 1.52
2270 3500 0.102481 TTTTGGGCACGCGCTTAAAA 59.898 45.000 5.73 4.64 38.60 1.52
2271 3501 0.102481 TTTGGGCACGCGCTTAAAAA 59.898 45.000 5.73 0.00 38.60 1.94
2272 3502 0.595310 TTGGGCACGCGCTTAAAAAC 60.595 50.000 5.73 0.00 38.60 2.43
2273 3503 2.078341 GGGCACGCGCTTAAAAACG 61.078 57.895 5.73 0.00 38.60 3.60
2301 3531 2.977405 CGCAGCATATTTTAGGCTCC 57.023 50.000 0.00 0.00 43.00 4.70
2302 3532 2.221169 CGCAGCATATTTTAGGCTCCA 58.779 47.619 0.00 0.00 43.00 3.86
2303 3533 2.225019 CGCAGCATATTTTAGGCTCCAG 59.775 50.000 0.00 0.00 43.00 3.86
2304 3534 3.480470 GCAGCATATTTTAGGCTCCAGA 58.520 45.455 0.00 0.00 43.00 3.86
2305 3535 4.077822 GCAGCATATTTTAGGCTCCAGAT 58.922 43.478 0.00 0.00 43.00 2.90
2306 3536 4.522022 GCAGCATATTTTAGGCTCCAGATT 59.478 41.667 0.00 0.00 43.00 2.40
2307 3537 5.707298 GCAGCATATTTTAGGCTCCAGATTA 59.293 40.000 0.00 0.00 43.00 1.75
2308 3538 6.348868 GCAGCATATTTTAGGCTCCAGATTAC 60.349 42.308 0.00 0.00 43.00 1.89
2309 3539 5.934625 AGCATATTTTAGGCTCCAGATTACG 59.065 40.000 0.00 0.00 43.00 3.18
2310 3540 5.390991 GCATATTTTAGGCTCCAGATTACGC 60.391 44.000 0.00 0.00 31.82 4.42
2311 3541 2.218953 TTTAGGCTCCAGATTACGCG 57.781 50.000 3.53 3.53 0.00 6.01
2312 3542 0.249322 TTAGGCTCCAGATTACGCGC 60.249 55.000 5.73 0.00 0.00 6.86
2313 3543 2.402282 TAGGCTCCAGATTACGCGCG 62.402 60.000 30.96 30.96 0.00 6.86
2314 3544 3.989595 GCTCCAGATTACGCGCGC 61.990 66.667 32.58 23.91 0.00 6.86
2315 3545 2.278857 CTCCAGATTACGCGCGCT 60.279 61.111 32.58 19.60 0.00 5.92
2316 3546 1.878522 CTCCAGATTACGCGCGCTT 60.879 57.895 32.58 23.63 0.00 4.68
2317 3547 1.812214 CTCCAGATTACGCGCGCTTC 61.812 60.000 32.58 23.17 0.00 3.86
2318 3548 2.164663 CCAGATTACGCGCGCTTCA 61.165 57.895 32.58 12.46 0.00 3.02
2319 3549 1.013323 CAGATTACGCGCGCTTCAC 60.013 57.895 32.58 17.47 0.00 3.18
2320 3550 1.445410 AGATTACGCGCGCTTCACA 60.445 52.632 32.58 8.06 0.00 3.58
2321 3551 1.011968 AGATTACGCGCGCTTCACAA 61.012 50.000 32.58 11.84 0.00 3.33
2322 3552 0.026285 GATTACGCGCGCTTCACAAT 59.974 50.000 32.58 16.41 0.00 2.71
2323 3553 0.446222 ATTACGCGCGCTTCACAATT 59.554 45.000 32.58 9.66 0.00 2.32
2324 3554 0.236187 TTACGCGCGCTTCACAATTT 59.764 45.000 32.58 8.80 0.00 1.82
2325 3555 0.451957 TACGCGCGCTTCACAATTTG 60.452 50.000 32.58 11.74 0.00 2.32
2326 3556 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
2327 3557 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
2328 3558 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
2329 3559 0.661187 CGCGCTTCACAATTTGCACT 60.661 50.000 5.56 0.00 0.00 4.40
2330 3560 0.780002 GCGCTTCACAATTTGCACTG 59.220 50.000 0.00 0.00 0.00 3.66
2331 3561 0.780002 CGCTTCACAATTTGCACTGC 59.220 50.000 0.00 0.00 0.00 4.40
2332 3562 0.780002 GCTTCACAATTTGCACTGCG 59.220 50.000 0.00 0.00 0.00 5.18
2333 3563 0.780002 CTTCACAATTTGCACTGCGC 59.220 50.000 0.00 0.00 42.89 6.09
2334 3564 0.933973 TTCACAATTTGCACTGCGCG 60.934 50.000 0.00 0.00 46.97 6.86
2335 3565 2.730604 ACAATTTGCACTGCGCGC 60.731 55.556 27.26 27.26 46.97 6.86
2336 3566 2.429571 CAATTTGCACTGCGCGCT 60.430 55.556 33.29 10.46 46.97 5.92
2337 3567 2.429571 AATTTGCACTGCGCGCTG 60.430 55.556 32.53 32.53 46.97 5.18
2338 3568 3.198236 AATTTGCACTGCGCGCTGT 62.198 52.632 33.91 33.91 46.97 4.40
2339 3569 2.682256 AATTTGCACTGCGCGCTGTT 62.682 50.000 36.35 21.60 46.97 3.16
2340 3570 2.682256 ATTTGCACTGCGCGCTGTTT 62.682 50.000 36.35 17.40 46.97 2.83
2341 3571 2.880719 TTTGCACTGCGCGCTGTTTT 62.881 50.000 36.35 16.66 46.97 2.43
2342 3572 3.389211 GCACTGCGCGCTGTTTTG 61.389 61.111 36.35 26.71 0.00 2.44
2343 3573 2.327592 CACTGCGCGCTGTTTTGA 59.672 55.556 36.35 12.92 0.00 2.69
2344 3574 1.723542 CACTGCGCGCTGTTTTGAG 60.724 57.895 36.35 23.62 0.00 3.02
2345 3575 2.798262 CTGCGCGCTGTTTTGAGC 60.798 61.111 33.29 0.00 35.46 4.26
2351 3581 4.666532 GCTGTTTTGAGCGCGCGT 62.667 61.111 32.35 18.26 0.00 6.01
2352 3582 2.052237 CTGTTTTGAGCGCGCGTT 60.052 55.556 32.35 27.63 0.00 4.84
2353 3583 1.654137 CTGTTTTGAGCGCGCGTTT 60.654 52.632 32.35 20.27 0.00 3.60
2354 3584 1.199852 CTGTTTTGAGCGCGCGTTTT 61.200 50.000 32.35 17.47 0.00 2.43
2355 3585 0.798771 TGTTTTGAGCGCGCGTTTTT 60.799 45.000 32.35 14.72 0.00 1.94
2383 3613 2.654749 GCTAAAGCAATGTTGGTCCC 57.345 50.000 0.00 0.00 41.59 4.46
2384 3614 1.135402 GCTAAAGCAATGTTGGTCCCG 60.135 52.381 0.00 0.00 41.59 5.14
2385 3615 1.472480 CTAAAGCAATGTTGGTCCCGG 59.528 52.381 0.00 0.00 38.04 5.73
2386 3616 1.815817 AAAGCAATGTTGGTCCCGGC 61.816 55.000 0.00 0.00 38.04 6.13
2387 3617 4.114997 GCAATGTTGGTCCCGGCG 62.115 66.667 0.00 0.00 0.00 6.46
2388 3618 4.114997 CAATGTTGGTCCCGGCGC 62.115 66.667 0.00 0.00 0.00 6.53
2389 3619 4.652131 AATGTTGGTCCCGGCGCA 62.652 61.111 10.83 0.00 0.00 6.09
2390 3620 3.936772 AATGTTGGTCCCGGCGCAT 62.937 57.895 10.83 0.00 0.00 4.73
2391 3621 3.936772 ATGTTGGTCCCGGCGCATT 62.937 57.895 10.83 0.00 0.00 3.56
2392 3622 2.437002 GTTGGTCCCGGCGCATTA 60.437 61.111 10.83 0.00 0.00 1.90
2393 3623 2.041686 GTTGGTCCCGGCGCATTAA 61.042 57.895 10.83 0.00 0.00 1.40
2394 3624 1.303398 TTGGTCCCGGCGCATTAAA 60.303 52.632 10.83 0.00 0.00 1.52
2395 3625 0.894184 TTGGTCCCGGCGCATTAAAA 60.894 50.000 10.83 0.00 0.00 1.52
2396 3626 0.894184 TGGTCCCGGCGCATTAAAAA 60.894 50.000 10.83 0.00 0.00 1.94
2397 3627 0.458260 GGTCCCGGCGCATTAAAAAT 59.542 50.000 10.83 0.00 0.00 1.82
2398 3628 1.555477 GTCCCGGCGCATTAAAAATG 58.445 50.000 10.83 0.00 0.00 2.32
2399 3629 1.135228 GTCCCGGCGCATTAAAAATGT 60.135 47.619 10.83 0.00 0.00 2.71
2400 3630 1.546476 TCCCGGCGCATTAAAAATGTT 59.454 42.857 10.83 0.00 0.00 2.71
2401 3631 2.753452 TCCCGGCGCATTAAAAATGTTA 59.247 40.909 10.83 0.00 0.00 2.41
2402 3632 2.855370 CCCGGCGCATTAAAAATGTTAC 59.145 45.455 10.83 0.00 0.00 2.50
2403 3633 3.502920 CCGGCGCATTAAAAATGTTACA 58.497 40.909 10.83 0.00 0.00 2.41
2404 3634 3.545873 CCGGCGCATTAAAAATGTTACAG 59.454 43.478 10.83 0.00 0.00 2.74
2405 3635 4.162812 CGGCGCATTAAAAATGTTACAGT 58.837 39.130 10.83 0.00 0.00 3.55
2406 3636 4.030083 CGGCGCATTAAAAATGTTACAGTG 59.970 41.667 10.83 0.00 0.00 3.66
2407 3637 4.326009 GGCGCATTAAAAATGTTACAGTGG 59.674 41.667 10.83 0.00 0.00 4.00
2408 3638 4.201580 GCGCATTAAAAATGTTACAGTGGC 60.202 41.667 0.30 0.00 0.00 5.01
2409 3639 4.030083 CGCATTAAAAATGTTACAGTGGCG 59.970 41.667 0.00 0.00 0.00 5.69
2410 3640 4.201580 GCATTAAAAATGTTACAGTGGCGC 60.202 41.667 0.00 0.00 0.00 6.53
2411 3641 2.044888 AAAAATGTTACAGTGGCGCG 57.955 45.000 0.00 0.00 0.00 6.86
2412 3642 0.386731 AAAATGTTACAGTGGCGCGC 60.387 50.000 25.94 25.94 0.00 6.86
2413 3643 1.234615 AAATGTTACAGTGGCGCGCT 61.235 50.000 32.29 13.63 0.00 5.92
2414 3644 0.390603 AATGTTACAGTGGCGCGCTA 60.391 50.000 32.29 24.64 0.00 4.26
2415 3645 0.179084 ATGTTACAGTGGCGCGCTAT 60.179 50.000 32.29 13.14 0.00 2.97
2416 3646 0.456628 TGTTACAGTGGCGCGCTATA 59.543 50.000 32.29 11.95 0.00 1.31
2417 3647 1.135053 TGTTACAGTGGCGCGCTATAA 60.135 47.619 32.29 17.61 0.00 0.98
2418 3648 1.257155 GTTACAGTGGCGCGCTATAAC 59.743 52.381 32.29 24.50 29.06 1.89
2419 3649 0.742505 TACAGTGGCGCGCTATAACT 59.257 50.000 32.29 24.17 0.00 2.24
2420 3650 0.108329 ACAGTGGCGCGCTATAACTT 60.108 50.000 32.29 15.45 0.00 2.66
2421 3651 1.006832 CAGTGGCGCGCTATAACTTT 58.993 50.000 32.29 6.85 0.00 2.66
2422 3652 1.396996 CAGTGGCGCGCTATAACTTTT 59.603 47.619 32.29 6.16 0.00 2.27
2423 3653 2.605818 CAGTGGCGCGCTATAACTTTTA 59.394 45.455 32.29 1.77 0.00 1.52
2424 3654 3.247648 CAGTGGCGCGCTATAACTTTTAT 59.752 43.478 32.29 5.46 0.00 1.40
2425 3655 3.875134 AGTGGCGCGCTATAACTTTTATT 59.125 39.130 32.29 4.78 0.00 1.40
2426 3656 5.050634 CAGTGGCGCGCTATAACTTTTATTA 60.051 40.000 32.29 0.00 0.00 0.98
2427 3657 5.176958 AGTGGCGCGCTATAACTTTTATTAG 59.823 40.000 32.29 0.00 0.00 1.73
2428 3658 5.176223 GTGGCGCGCTATAACTTTTATTAGA 59.824 40.000 32.29 0.00 0.00 2.10
2429 3659 5.176223 TGGCGCGCTATAACTTTTATTAGAC 59.824 40.000 32.29 7.73 0.00 2.59
2430 3660 5.295780 GCGCGCTATAACTTTTATTAGACG 58.704 41.667 26.67 0.00 0.00 4.18
2431 3661 5.295780 CGCGCTATAACTTTTATTAGACGC 58.704 41.667 5.56 0.00 38.20 5.19
2432 3662 5.295780 GCGCTATAACTTTTATTAGACGCG 58.704 41.667 3.53 3.53 38.80 6.01
2433 3663 5.116074 GCGCTATAACTTTTATTAGACGCGA 59.884 40.000 15.93 0.00 38.13 5.87
2434 3664 6.345250 GCGCTATAACTTTTATTAGACGCGAA 60.345 38.462 15.93 0.00 38.13 4.70
2435 3665 7.549649 CGCTATAACTTTTATTAGACGCGAAA 58.450 34.615 15.93 4.17 38.13 3.46
2436 3666 8.212495 CGCTATAACTTTTATTAGACGCGAAAT 58.788 33.333 15.93 12.05 38.13 2.17
2437 3667 9.859692 GCTATAACTTTTATTAGACGCGAAATT 57.140 29.630 15.93 0.00 0.00 1.82
2442 3672 8.791355 ACTTTTATTAGACGCGAAATTTTTGT 57.209 26.923 15.93 5.00 0.00 2.83
2443 3673 8.687301 ACTTTTATTAGACGCGAAATTTTTGTG 58.313 29.630 15.93 8.14 0.00 3.33
2444 3674 6.605496 TTATTAGACGCGAAATTTTTGTGC 57.395 33.333 15.93 3.86 0.00 4.57
2447 3677 1.127620 CGCGAAATTTTTGTGCGGC 59.872 52.632 0.00 0.00 44.65 6.53
2448 3678 1.274798 CGCGAAATTTTTGTGCGGCT 61.275 50.000 0.00 0.00 44.65 5.52
2449 3679 0.161446 GCGAAATTTTTGTGCGGCTG 59.839 50.000 0.00 0.00 0.00 4.85
2450 3680 1.486439 CGAAATTTTTGTGCGGCTGT 58.514 45.000 0.00 0.00 0.00 4.40
2451 3681 1.857837 CGAAATTTTTGTGCGGCTGTT 59.142 42.857 0.00 0.00 0.00 3.16
2452 3682 2.347476 CGAAATTTTTGTGCGGCTGTTG 60.347 45.455 0.00 0.00 0.00 3.33
2453 3683 1.580815 AATTTTTGTGCGGCTGTTGG 58.419 45.000 0.00 0.00 0.00 3.77
2454 3684 0.749649 ATTTTTGTGCGGCTGTTGGA 59.250 45.000 0.00 0.00 0.00 3.53
2455 3685 0.102120 TTTTTGTGCGGCTGTTGGAG 59.898 50.000 0.00 0.00 0.00 3.86
2456 3686 0.749818 TTTTGTGCGGCTGTTGGAGA 60.750 50.000 0.00 0.00 0.00 3.71
2457 3687 0.537143 TTTGTGCGGCTGTTGGAGAT 60.537 50.000 0.00 0.00 0.00 2.75
2458 3688 1.236616 TTGTGCGGCTGTTGGAGATG 61.237 55.000 0.00 0.00 0.00 2.90
2459 3689 2.747460 TGCGGCTGTTGGAGATGC 60.747 61.111 0.00 0.00 0.00 3.91
2460 3690 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
2471 3701 4.195416 GTTGGAGATGCTCTAAGAAAGGG 58.805 47.826 0.00 0.00 31.92 3.95
2475 3705 5.192522 TGGAGATGCTCTAAGAAAGGGAAAT 59.807 40.000 0.00 0.00 0.00 2.17
2477 3707 7.092444 TGGAGATGCTCTAAGAAAGGGAAATTA 60.092 37.037 0.00 0.00 0.00 1.40
2483 3716 6.511929 GCTCTAAGAAAGGGAAATTATGTCGC 60.512 42.308 0.00 0.00 0.00 5.19
2484 3717 6.650120 TCTAAGAAAGGGAAATTATGTCGCT 58.350 36.000 0.00 0.00 39.75 4.93
2609 3845 1.639722 TTCCTCTTCGGTGATGGTCA 58.360 50.000 0.00 0.00 0.00 4.02
2615 3851 0.321564 TTCGGTGATGGTCAGCCTTG 60.322 55.000 3.83 0.00 41.50 3.61
2638 3874 3.308866 CGACACGATTTACCCTCCATTTC 59.691 47.826 0.00 0.00 0.00 2.17
2643 3880 2.500392 TTTACCCTCCATTTCCGTGG 57.500 50.000 0.00 0.00 40.76 4.94
2649 3886 1.960689 CCTCCATTTCCGTGGTGTTTT 59.039 47.619 0.00 0.00 40.27 2.43
2653 3890 2.350388 CCATTTCCGTGGTGTTTTCGAG 60.350 50.000 0.00 0.00 34.46 4.04
2655 3892 1.860676 TTCCGTGGTGTTTTCGAGAG 58.139 50.000 0.00 0.00 0.00 3.20
2686 3923 9.842775 ATTTCTATATGTGGATATGCATACTGG 57.157 33.333 8.99 0.00 31.38 4.00
2702 3945 5.277683 GCATACTGGCATGTTGTATTCTCTG 60.278 44.000 0.00 0.00 0.00 3.35
2732 3975 7.255486 GGACTACAAGAAACCAAAAGCAATACT 60.255 37.037 0.00 0.00 0.00 2.12
2733 3976 7.425606 ACTACAAGAAACCAAAAGCAATACTG 58.574 34.615 0.00 0.00 0.00 2.74
2734 3977 6.220726 ACAAGAAACCAAAAGCAATACTGT 57.779 33.333 0.00 0.00 0.00 3.55
2735 3978 7.341445 ACAAGAAACCAAAAGCAATACTGTA 57.659 32.000 0.00 0.00 0.00 2.74
2736 3979 7.200455 ACAAGAAACCAAAAGCAATACTGTAC 58.800 34.615 0.00 0.00 0.00 2.90
2748 3991 6.893583 AGCAATACTGTACATCTCTTTGGAT 58.106 36.000 0.00 0.00 0.00 3.41
2749 3992 7.341805 AGCAATACTGTACATCTCTTTGGATT 58.658 34.615 0.00 0.00 0.00 3.01
2775 4018 7.617041 AGTATCTTATGGAAACTGCTTTCAC 57.383 36.000 1.41 0.00 38.04 3.18
2787 4030 0.721718 GCTTTCACGTGGAAGATCGG 59.278 55.000 35.55 13.92 36.72 4.18
2802 4045 1.993370 GATCGGACTTCGGTTTCACTG 59.007 52.381 0.00 0.00 39.77 3.66
2820 4063 4.775253 TCACTGGGGTTCCATTTAATTTCC 59.225 41.667 0.00 0.00 43.11 3.13
2826 4069 5.937540 GGGGTTCCATTTAATTTCCAAACAG 59.062 40.000 0.00 0.00 0.00 3.16
2831 4074 8.925700 GTTCCATTTAATTTCCAAACAGCTAAG 58.074 33.333 0.00 0.00 0.00 2.18
2832 4075 8.415950 TCCATTTAATTTCCAAACAGCTAAGA 57.584 30.769 0.00 0.00 0.00 2.10
2833 4076 9.034800 TCCATTTAATTTCCAAACAGCTAAGAT 57.965 29.630 0.00 0.00 0.00 2.40
2834 4077 9.657419 CCATTTAATTTCCAAACAGCTAAGATT 57.343 29.630 0.00 0.00 0.00 2.40
2867 4110 1.676529 AGTATAGACGCACACGCTCAT 59.323 47.619 0.00 0.00 45.53 2.90
2874 4117 2.127251 ACGCACACGCTCATACATATG 58.873 47.619 0.00 0.00 45.53 1.78
2875 4118 2.127251 CGCACACGCTCATACATATGT 58.873 47.619 13.93 13.93 35.26 2.29
2901 4144 4.216411 ACACTCAACCCTATAAACGCAT 57.784 40.909 0.00 0.00 0.00 4.73
2902 4145 3.938963 ACACTCAACCCTATAAACGCATG 59.061 43.478 0.00 0.00 0.00 4.06
2903 4146 3.938963 CACTCAACCCTATAAACGCATGT 59.061 43.478 0.00 0.00 0.00 3.21
2906 4149 5.758296 ACTCAACCCTATAAACGCATGTATG 59.242 40.000 0.00 0.00 0.00 2.39
2928 4172 2.037772 CACACTATCCCCTATGAGCACC 59.962 54.545 0.00 0.00 0.00 5.01
2929 4173 2.329267 CACTATCCCCTATGAGCACCA 58.671 52.381 0.00 0.00 0.00 4.17
2933 4177 2.203070 CCCTATGAGCACCACCGC 60.203 66.667 0.00 0.00 0.00 5.68
2944 4188 4.803426 CCACCGCGAGACTGAGCC 62.803 72.222 8.23 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.103538 GAGTTCATCGGCGCCGTA 59.896 61.111 44.16 31.71 40.74 4.02
244 245 2.251642 GGACAGCGTTGGTGGACAC 61.252 63.158 3.74 0.00 35.13 3.67
347 348 1.949631 GATCGATGGCGGGTTCGTC 60.950 63.158 0.54 0.00 42.06 4.20
398 399 2.429930 CCTTTGACCCCACGAGCA 59.570 61.111 0.00 0.00 0.00 4.26
690 692 0.396001 GCTTTTATAACCGGGCCCCA 60.396 55.000 18.66 0.00 0.00 4.96
754 767 0.541764 GAGATCGGAGATGGGAGGCT 60.542 60.000 0.00 0.00 45.12 4.58
862 880 2.202453 GTCGTCGAAGTCTCCGCC 60.202 66.667 0.00 0.00 0.00 6.13
1026 1062 2.203728 ACCAGCACGGGGTAGTGA 60.204 61.111 0.00 0.00 44.43 3.41
1072 1108 1.812922 GCCTCAGTCGCATGTCCTG 60.813 63.158 0.00 0.00 0.00 3.86
1104 1140 1.811266 CCTGTCATCCGTCTTGGCG 60.811 63.158 0.00 0.00 37.80 5.69
1267 1303 2.202676 GAGGACGGCGAGCTCAAG 60.203 66.667 16.62 6.53 0.00 3.02
1793 1833 7.323420 GTTTCTTTTCATTCCTCCCAATTAGG 58.677 38.462 0.00 0.00 35.26 2.69
1865 1905 5.331876 ACGAGAACACAAATTTGGGAAAA 57.668 34.783 26.87 0.00 35.04 2.29
2097 3326 2.948979 TGAGATTCGTGCAAGGTTTTGT 59.051 40.909 0.00 0.00 36.65 2.83
2098 3327 3.624326 TGAGATTCGTGCAAGGTTTTG 57.376 42.857 0.00 0.00 37.36 2.44
2122 3352 3.065095 GCTCTTAGTTCGACACCGAGTAT 59.935 47.826 0.00 0.00 46.39 2.12
2136 3366 2.093235 GCCTGTTGGAGATGCTCTTAGT 60.093 50.000 0.00 0.00 34.57 2.24
2137 3367 2.559440 GCCTGTTGGAGATGCTCTTAG 58.441 52.381 0.00 0.00 34.57 2.18
2138 3368 1.134699 CGCCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 34.95 2.10
2139 3369 0.392193 CGCCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 34.95 2.85
2140 3370 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
2141 3371 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
2142 3372 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
2143 3373 3.512516 GGCGCCTGTTGGAGATGC 61.513 66.667 22.15 0.00 34.95 3.91
2144 3374 2.825836 GGGCGCCTGTTGGAGATG 60.826 66.667 28.56 0.00 34.95 2.90
2145 3375 2.424842 TTTGGGCGCCTGTTGGAGAT 62.425 55.000 28.56 0.00 34.95 2.75
2146 3376 2.632602 TTTTGGGCGCCTGTTGGAGA 62.633 55.000 28.56 1.45 34.95 3.71
2147 3377 1.743321 TTTTTGGGCGCCTGTTGGAG 61.743 55.000 28.56 0.00 36.16 3.86
2148 3378 1.743321 CTTTTTGGGCGCCTGTTGGA 61.743 55.000 28.56 7.57 34.57 3.53
2149 3379 1.300853 CTTTTTGGGCGCCTGTTGG 60.301 57.895 28.56 8.87 0.00 3.77
2150 3380 0.318955 CTCTTTTTGGGCGCCTGTTG 60.319 55.000 28.56 12.02 0.00 3.33
2151 3381 2.041153 CTCTTTTTGGGCGCCTGTT 58.959 52.632 28.56 0.00 0.00 3.16
2152 3382 2.564721 GCTCTTTTTGGGCGCCTGT 61.565 57.895 28.56 0.00 0.00 4.00
2153 3383 2.205243 GAGCTCTTTTTGGGCGCCTG 62.205 60.000 28.56 9.84 0.00 4.85
2154 3384 1.973812 GAGCTCTTTTTGGGCGCCT 60.974 57.895 28.56 0.61 0.00 5.52
2155 3385 1.973812 AGAGCTCTTTTTGGGCGCC 60.974 57.895 21.18 21.18 0.00 6.53
2156 3386 1.211190 CAGAGCTCTTTTTGGGCGC 59.789 57.895 15.27 0.00 0.00 6.53
2157 3387 0.239347 CACAGAGCTCTTTTTGGGCG 59.761 55.000 15.27 2.35 0.00 6.13
2158 3388 0.038801 GCACAGAGCTCTTTTTGGGC 60.039 55.000 15.27 13.16 41.15 5.36
2159 3389 0.239347 CGCACAGAGCTCTTTTTGGG 59.761 55.000 15.27 15.36 42.61 4.12
2160 3390 0.386478 GCGCACAGAGCTCTTTTTGG 60.386 55.000 15.27 4.82 42.61 3.28
2161 3391 0.590195 AGCGCACAGAGCTCTTTTTG 59.410 50.000 15.27 12.64 41.83 2.44
2162 3392 2.169832 TAGCGCACAGAGCTCTTTTT 57.830 45.000 15.27 0.00 44.79 1.94
2163 3393 2.169832 TTAGCGCACAGAGCTCTTTT 57.830 45.000 15.27 0.21 44.79 2.27
2164 3394 2.169832 TTTAGCGCACAGAGCTCTTT 57.830 45.000 15.27 4.62 44.79 2.52
2165 3395 2.169832 TTTTAGCGCACAGAGCTCTT 57.830 45.000 15.27 0.20 44.79 2.85
2166 3396 2.169832 TTTTTAGCGCACAGAGCTCT 57.830 45.000 11.45 11.45 44.79 4.09
2195 3425 0.383949 GAGCTGTTCGGCACCAAAAA 59.616 50.000 0.00 0.00 34.17 1.94
2196 3426 1.452145 GGAGCTGTTCGGCACCAAAA 61.452 55.000 13.59 0.00 41.46 2.44
2197 3427 1.896660 GGAGCTGTTCGGCACCAAA 60.897 57.895 13.59 0.00 41.46 3.28
2198 3428 2.281484 GGAGCTGTTCGGCACCAA 60.281 61.111 13.59 0.00 41.46 3.67
2200 3430 0.392461 TATTGGAGCTGTTCGGCACC 60.392 55.000 12.01 12.01 42.02 5.01
2201 3431 1.009829 CTATTGGAGCTGTTCGGCAC 58.990 55.000 0.00 0.00 34.17 5.01
2202 3432 0.901827 TCTATTGGAGCTGTTCGGCA 59.098 50.000 0.00 0.00 34.17 5.69
2203 3433 1.869767 CATCTATTGGAGCTGTTCGGC 59.130 52.381 0.00 0.00 0.00 5.54
2204 3434 1.869767 GCATCTATTGGAGCTGTTCGG 59.130 52.381 0.00 0.00 0.00 4.30
2205 3435 2.543012 CAGCATCTATTGGAGCTGTTCG 59.457 50.000 0.00 0.00 46.92 3.95
2210 3440 8.790718 CAATATTTTACAGCATCTATTGGAGCT 58.209 33.333 0.00 0.00 37.95 4.09
2211 3441 8.571336 ACAATATTTTACAGCATCTATTGGAGC 58.429 33.333 0.00 0.00 33.15 4.70
2212 3442 9.888878 CACAATATTTTACAGCATCTATTGGAG 57.111 33.333 0.00 0.00 33.15 3.86
2213 3443 9.407380 ACACAATATTTTACAGCATCTATTGGA 57.593 29.630 0.00 0.00 33.15 3.53
2214 3444 9.454585 CACACAATATTTTACAGCATCTATTGG 57.545 33.333 0.00 0.00 33.15 3.16
2215 3445 8.961092 GCACACAATATTTTACAGCATCTATTG 58.039 33.333 0.00 0.00 34.38 1.90
2216 3446 7.857389 CGCACACAATATTTTACAGCATCTATT 59.143 33.333 0.00 0.00 0.00 1.73
2217 3447 7.355017 CGCACACAATATTTTACAGCATCTAT 58.645 34.615 0.00 0.00 0.00 1.98
2218 3448 6.714492 CGCACACAATATTTTACAGCATCTA 58.286 36.000 0.00 0.00 0.00 1.98
2219 3449 5.572211 CGCACACAATATTTTACAGCATCT 58.428 37.500 0.00 0.00 0.00 2.90
2220 3450 4.204978 GCGCACACAATATTTTACAGCATC 59.795 41.667 0.30 0.00 0.00 3.91
2221 3451 4.104776 GCGCACACAATATTTTACAGCAT 58.895 39.130 0.30 0.00 0.00 3.79
2222 3452 3.190327 AGCGCACACAATATTTTACAGCA 59.810 39.130 11.47 0.00 0.00 4.41
2223 3453 3.758300 AGCGCACACAATATTTTACAGC 58.242 40.909 11.47 0.00 0.00 4.40
2224 3454 7.789341 TTTTAGCGCACACAATATTTTACAG 57.211 32.000 11.47 0.00 0.00 2.74
2225 3455 7.863375 ACTTTTTAGCGCACACAATATTTTACA 59.137 29.630 11.47 0.00 0.00 2.41
2226 3456 8.222984 ACTTTTTAGCGCACACAATATTTTAC 57.777 30.769 11.47 0.00 0.00 2.01
2227 3457 8.804688 AACTTTTTAGCGCACACAATATTTTA 57.195 26.923 11.47 0.00 0.00 1.52
2228 3458 7.707774 AACTTTTTAGCGCACACAATATTTT 57.292 28.000 11.47 0.00 0.00 1.82
2229 3459 7.707774 AAACTTTTTAGCGCACACAATATTT 57.292 28.000 11.47 0.00 0.00 1.40
2230 3460 7.307101 CCAAAACTTTTTAGCGCACACAATATT 60.307 33.333 11.47 0.00 0.00 1.28
2231 3461 6.145371 CCAAAACTTTTTAGCGCACACAATAT 59.855 34.615 11.47 0.00 0.00 1.28
2232 3462 5.460419 CCAAAACTTTTTAGCGCACACAATA 59.540 36.000 11.47 0.00 0.00 1.90
2233 3463 4.269844 CCAAAACTTTTTAGCGCACACAAT 59.730 37.500 11.47 0.00 0.00 2.71
2234 3464 3.614616 CCAAAACTTTTTAGCGCACACAA 59.385 39.130 11.47 0.00 0.00 3.33
2235 3465 3.182967 CCAAAACTTTTTAGCGCACACA 58.817 40.909 11.47 0.00 0.00 3.72
2236 3466 2.538037 CCCAAAACTTTTTAGCGCACAC 59.462 45.455 11.47 0.00 0.00 3.82
2237 3467 2.815478 CCCAAAACTTTTTAGCGCACA 58.185 42.857 11.47 0.00 0.00 4.57
2238 3468 1.525197 GCCCAAAACTTTTTAGCGCAC 59.475 47.619 11.47 0.00 0.00 5.34
2239 3469 1.137086 TGCCCAAAACTTTTTAGCGCA 59.863 42.857 11.47 0.00 33.66 6.09
2240 3470 1.525197 GTGCCCAAAACTTTTTAGCGC 59.475 47.619 0.00 0.00 34.34 5.92
2241 3471 1.784283 CGTGCCCAAAACTTTTTAGCG 59.216 47.619 4.91 0.00 33.66 4.26
2242 3472 1.525197 GCGTGCCCAAAACTTTTTAGC 59.475 47.619 2.98 2.98 32.39 3.09
2243 3473 1.784283 CGCGTGCCCAAAACTTTTTAG 59.216 47.619 0.00 0.00 0.00 1.85
2244 3474 1.841450 CGCGTGCCCAAAACTTTTTA 58.159 45.000 0.00 0.00 0.00 1.52
2245 3475 1.425267 GCGCGTGCCCAAAACTTTTT 61.425 50.000 10.56 0.00 33.98 1.94
2246 3476 1.880796 GCGCGTGCCCAAAACTTTT 60.881 52.632 10.56 0.00 33.98 2.27
2247 3477 2.279186 GCGCGTGCCCAAAACTTT 60.279 55.556 10.56 0.00 33.98 2.66
2248 3478 1.448922 TAAGCGCGTGCCCAAAACTT 61.449 50.000 19.02 5.94 44.31 2.66
2249 3479 1.448922 TTAAGCGCGTGCCCAAAACT 61.449 50.000 19.02 0.00 44.31 2.66
2250 3480 0.595310 TTTAAGCGCGTGCCCAAAAC 60.595 50.000 19.02 0.00 44.31 2.43
2251 3481 0.102481 TTTTAAGCGCGTGCCCAAAA 59.898 45.000 19.02 19.74 44.31 2.44
2252 3482 0.102481 TTTTTAAGCGCGTGCCCAAA 59.898 45.000 19.02 14.93 44.31 3.28
2253 3483 0.595310 GTTTTTAAGCGCGTGCCCAA 60.595 50.000 19.02 9.13 44.31 4.12
2254 3484 1.008309 GTTTTTAAGCGCGTGCCCA 60.008 52.632 19.02 2.04 44.31 5.36
2255 3485 2.078341 CGTTTTTAAGCGCGTGCCC 61.078 57.895 19.02 0.00 44.31 5.36
2256 3486 3.432666 CGTTTTTAAGCGCGTGCC 58.567 55.556 19.02 0.00 44.31 5.01
2273 3503 0.792640 AATATGCTGCGCACGATAGC 59.207 50.000 5.66 9.17 43.04 2.97
2274 3504 3.526385 AAAATATGCTGCGCACGATAG 57.474 42.857 5.66 0.00 43.04 2.08
2275 3505 3.431912 CCTAAAATATGCTGCGCACGATA 59.568 43.478 5.66 5.99 43.04 2.92
2276 3506 2.224079 CCTAAAATATGCTGCGCACGAT 59.776 45.455 5.66 3.46 43.04 3.73
2277 3507 1.597195 CCTAAAATATGCTGCGCACGA 59.403 47.619 5.66 0.00 43.04 4.35
2278 3508 1.921573 GCCTAAAATATGCTGCGCACG 60.922 52.381 5.66 3.93 43.04 5.34
2279 3509 1.334869 AGCCTAAAATATGCTGCGCAC 59.665 47.619 5.66 4.25 43.04 5.34
2280 3510 1.603802 GAGCCTAAAATATGCTGCGCA 59.396 47.619 10.98 10.98 44.86 6.09
2281 3511 1.068954 GGAGCCTAAAATATGCTGCGC 60.069 52.381 0.00 0.00 34.99 6.09
2282 3512 2.221169 TGGAGCCTAAAATATGCTGCG 58.779 47.619 0.00 0.00 45.19 5.18
2283 3513 3.480470 TCTGGAGCCTAAAATATGCTGC 58.520 45.455 0.00 0.00 42.92 5.25
2284 3514 6.128445 CGTAATCTGGAGCCTAAAATATGCTG 60.128 42.308 0.00 0.00 34.99 4.41
2285 3515 5.934625 CGTAATCTGGAGCCTAAAATATGCT 59.065 40.000 0.00 0.00 38.24 3.79
2286 3516 5.390991 GCGTAATCTGGAGCCTAAAATATGC 60.391 44.000 0.00 0.00 0.00 3.14
2287 3517 5.163953 CGCGTAATCTGGAGCCTAAAATATG 60.164 44.000 0.00 0.00 0.00 1.78
2288 3518 4.929808 CGCGTAATCTGGAGCCTAAAATAT 59.070 41.667 0.00 0.00 0.00 1.28
2289 3519 4.304110 CGCGTAATCTGGAGCCTAAAATA 58.696 43.478 0.00 0.00 0.00 1.40
2290 3520 3.131396 CGCGTAATCTGGAGCCTAAAAT 58.869 45.455 0.00 0.00 0.00 1.82
2291 3521 2.546778 CGCGTAATCTGGAGCCTAAAA 58.453 47.619 0.00 0.00 0.00 1.52
2292 3522 1.805120 GCGCGTAATCTGGAGCCTAAA 60.805 52.381 8.43 0.00 0.00 1.85
2293 3523 0.249322 GCGCGTAATCTGGAGCCTAA 60.249 55.000 8.43 0.00 0.00 2.69
2294 3524 1.362717 GCGCGTAATCTGGAGCCTA 59.637 57.895 8.43 0.00 0.00 3.93
2295 3525 2.107141 GCGCGTAATCTGGAGCCT 59.893 61.111 8.43 0.00 0.00 4.58
2296 3526 3.330853 CGCGCGTAATCTGGAGCC 61.331 66.667 24.19 0.00 0.00 4.70
2297 3527 3.989595 GCGCGCGTAATCTGGAGC 61.990 66.667 32.35 6.21 0.00 4.70
2298 3528 1.812214 GAAGCGCGCGTAATCTGGAG 61.812 60.000 32.35 0.00 0.00 3.86
2299 3529 1.876714 GAAGCGCGCGTAATCTGGA 60.877 57.895 32.35 0.00 0.00 3.86
2300 3530 2.164663 TGAAGCGCGCGTAATCTGG 61.165 57.895 32.35 0.04 0.00 3.86
2301 3531 1.013323 GTGAAGCGCGCGTAATCTG 60.013 57.895 32.35 0.92 0.00 2.90
2302 3532 1.011968 TTGTGAAGCGCGCGTAATCT 61.012 50.000 32.35 17.09 0.00 2.40
2303 3533 0.026285 ATTGTGAAGCGCGCGTAATC 59.974 50.000 32.35 24.93 0.00 1.75
2304 3534 0.446222 AATTGTGAAGCGCGCGTAAT 59.554 45.000 32.35 16.27 0.00 1.89
2305 3535 0.236187 AAATTGTGAAGCGCGCGTAA 59.764 45.000 32.35 14.00 0.00 3.18
2306 3536 0.451957 CAAATTGTGAAGCGCGCGTA 60.452 50.000 32.35 13.43 0.00 4.42
2307 3537 1.725625 CAAATTGTGAAGCGCGCGT 60.726 52.632 32.35 24.81 0.00 6.01
2308 3538 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
2309 3539 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
2310 3540 0.661187 AGTGCAAATTGTGAAGCGCG 60.661 50.000 0.00 0.00 41.96 6.86
2311 3541 0.780002 CAGTGCAAATTGTGAAGCGC 59.220 50.000 0.00 0.00 37.74 5.92
2312 3542 0.780002 GCAGTGCAAATTGTGAAGCG 59.220 50.000 11.09 0.00 0.00 4.68
2313 3543 0.780002 CGCAGTGCAAATTGTGAAGC 59.220 50.000 16.83 0.00 0.00 3.86
2314 3544 0.780002 GCGCAGTGCAAATTGTGAAG 59.220 50.000 16.83 0.00 45.45 3.02
2315 3545 0.933973 CGCGCAGTGCAAATTGTGAA 60.934 50.000 16.83 0.00 46.97 3.18
2316 3546 1.370293 CGCGCAGTGCAAATTGTGA 60.370 52.632 16.83 0.00 46.97 3.58
2317 3547 3.140149 CGCGCAGTGCAAATTGTG 58.860 55.556 16.83 0.69 46.97 3.33
2326 3556 1.723542 CTCAAAACAGCGCGCAGTG 60.724 57.895 35.10 25.77 43.41 3.66
2327 3557 2.633657 CTCAAAACAGCGCGCAGT 59.366 55.556 35.10 29.72 0.00 4.40
2328 3558 2.798262 GCTCAAAACAGCGCGCAG 60.798 61.111 35.10 28.90 0.00 5.18
2334 3564 4.666532 ACGCGCGCTCAAAACAGC 62.667 61.111 32.58 0.00 35.90 4.40
2335 3565 1.199852 AAAACGCGCGCTCAAAACAG 61.200 50.000 32.58 13.34 0.00 3.16
2336 3566 0.798771 AAAAACGCGCGCTCAAAACA 60.799 45.000 32.58 0.00 0.00 2.83
2337 3567 1.914389 AAAAACGCGCGCTCAAAAC 59.086 47.368 32.58 0.00 0.00 2.43
2338 3568 4.386245 AAAAACGCGCGCTCAAAA 57.614 44.444 32.58 0.00 0.00 2.44
2364 3594 1.135402 CGGGACCAACATTGCTTTAGC 60.135 52.381 0.00 0.00 42.50 3.09
2365 3595 1.472480 CCGGGACCAACATTGCTTTAG 59.528 52.381 0.00 0.00 0.00 1.85
2366 3596 1.540267 CCGGGACCAACATTGCTTTA 58.460 50.000 0.00 0.00 0.00 1.85
2367 3597 1.815817 GCCGGGACCAACATTGCTTT 61.816 55.000 2.18 0.00 0.00 3.51
2368 3598 2.275380 GCCGGGACCAACATTGCTT 61.275 57.895 2.18 0.00 0.00 3.91
2369 3599 2.676471 GCCGGGACCAACATTGCT 60.676 61.111 2.18 0.00 0.00 3.91
2370 3600 4.114997 CGCCGGGACCAACATTGC 62.115 66.667 2.18 0.00 0.00 3.56
2371 3601 4.114997 GCGCCGGGACCAACATTG 62.115 66.667 2.18 0.00 0.00 2.82
2372 3602 3.936772 ATGCGCCGGGACCAACATT 62.937 57.895 4.18 0.00 0.00 2.71
2373 3603 2.544590 TAATGCGCCGGGACCAACAT 62.545 55.000 4.18 0.00 0.00 2.71
2374 3604 2.749706 TTAATGCGCCGGGACCAACA 62.750 55.000 4.18 0.00 0.00 3.33
2375 3605 1.587933 TTTAATGCGCCGGGACCAAC 61.588 55.000 4.18 0.00 0.00 3.77
2376 3606 0.894184 TTTTAATGCGCCGGGACCAA 60.894 50.000 4.18 0.00 0.00 3.67
2377 3607 0.894184 TTTTTAATGCGCCGGGACCA 60.894 50.000 4.18 0.00 0.00 4.02
2378 3608 0.458260 ATTTTTAATGCGCCGGGACC 59.542 50.000 4.18 0.00 0.00 4.46
2379 3609 1.135228 ACATTTTTAATGCGCCGGGAC 60.135 47.619 4.18 0.00 0.00 4.46
2380 3610 1.178276 ACATTTTTAATGCGCCGGGA 58.822 45.000 4.18 0.00 0.00 5.14
2381 3611 2.003196 AACATTTTTAATGCGCCGGG 57.997 45.000 4.18 0.00 0.00 5.73
2382 3612 3.502920 TGTAACATTTTTAATGCGCCGG 58.497 40.909 4.18 0.00 0.00 6.13
2383 3613 4.030083 CACTGTAACATTTTTAATGCGCCG 59.970 41.667 4.18 0.00 0.00 6.46
2384 3614 4.326009 CCACTGTAACATTTTTAATGCGCC 59.674 41.667 4.18 0.00 0.00 6.53
2385 3615 4.201580 GCCACTGTAACATTTTTAATGCGC 60.202 41.667 0.00 0.00 0.00 6.09
2386 3616 4.030083 CGCCACTGTAACATTTTTAATGCG 59.970 41.667 0.00 0.00 0.00 4.73
2387 3617 4.201580 GCGCCACTGTAACATTTTTAATGC 60.202 41.667 0.00 0.00 0.00 3.56
2388 3618 4.030083 CGCGCCACTGTAACATTTTTAATG 59.970 41.667 0.00 0.00 0.00 1.90
2389 3619 4.162812 CGCGCCACTGTAACATTTTTAAT 58.837 39.130 0.00 0.00 0.00 1.40
2390 3620 3.556513 CGCGCCACTGTAACATTTTTAA 58.443 40.909 0.00 0.00 0.00 1.52
2391 3621 2.666069 GCGCGCCACTGTAACATTTTTA 60.666 45.455 23.24 0.00 0.00 1.52
2392 3622 1.928595 GCGCGCCACTGTAACATTTTT 60.929 47.619 23.24 0.00 0.00 1.94
2393 3623 0.386731 GCGCGCCACTGTAACATTTT 60.387 50.000 23.24 0.00 0.00 1.82
2394 3624 1.209127 GCGCGCCACTGTAACATTT 59.791 52.632 23.24 0.00 0.00 2.32
2395 3625 0.390603 TAGCGCGCCACTGTAACATT 60.391 50.000 30.33 6.92 0.00 2.71
2396 3626 0.179084 ATAGCGCGCCACTGTAACAT 60.179 50.000 30.33 7.53 0.00 2.71
2397 3627 0.456628 TATAGCGCGCCACTGTAACA 59.543 50.000 30.33 2.66 0.00 2.41
2398 3628 1.257155 GTTATAGCGCGCCACTGTAAC 59.743 52.381 30.33 22.62 35.50 2.50
2399 3629 1.135527 AGTTATAGCGCGCCACTGTAA 59.864 47.619 30.33 15.46 0.00 2.41
2400 3630 0.742505 AGTTATAGCGCGCCACTGTA 59.257 50.000 30.33 14.06 0.00 2.74
2401 3631 0.108329 AAGTTATAGCGCGCCACTGT 60.108 50.000 30.33 11.88 0.00 3.55
2402 3632 1.006832 AAAGTTATAGCGCGCCACTG 58.993 50.000 30.33 0.00 0.00 3.66
2403 3633 1.734163 AAAAGTTATAGCGCGCCACT 58.266 45.000 30.33 21.27 0.00 4.00
2404 3634 3.872560 ATAAAAGTTATAGCGCGCCAC 57.127 42.857 30.33 19.26 0.00 5.01
2405 3635 5.176223 GTCTAATAAAAGTTATAGCGCGCCA 59.824 40.000 30.33 16.82 0.00 5.69
2406 3636 5.606266 GTCTAATAAAAGTTATAGCGCGCC 58.394 41.667 30.33 12.43 0.00 6.53
2407 3637 5.295780 CGTCTAATAAAAGTTATAGCGCGC 58.704 41.667 26.66 26.66 0.00 6.86
2408 3638 5.295780 GCGTCTAATAAAAGTTATAGCGCG 58.704 41.667 0.00 0.00 0.00 6.86
2409 3639 5.116074 TCGCGTCTAATAAAAGTTATAGCGC 59.884 40.000 5.77 0.00 42.02 5.92
2410 3640 6.664978 TCGCGTCTAATAAAAGTTATAGCG 57.335 37.500 5.77 0.00 43.37 4.26
2411 3641 9.859692 AATTTCGCGTCTAATAAAAGTTATAGC 57.140 29.630 5.77 0.00 0.00 2.97
2416 3646 9.240159 ACAAAAATTTCGCGTCTAATAAAAGTT 57.760 25.926 5.77 0.00 0.00 2.66
2417 3647 8.687301 CACAAAAATTTCGCGTCTAATAAAAGT 58.313 29.630 5.77 0.00 0.00 2.66
2418 3648 7.678428 GCACAAAAATTTCGCGTCTAATAAAAG 59.322 33.333 5.77 0.41 0.00 2.27
2419 3649 7.494947 GCACAAAAATTTCGCGTCTAATAAAA 58.505 30.769 5.77 0.00 0.00 1.52
2420 3650 6.183359 CGCACAAAAATTTCGCGTCTAATAAA 60.183 34.615 5.77 0.00 40.99 1.40
2421 3651 5.281842 CGCACAAAAATTTCGCGTCTAATAA 59.718 36.000 5.77 0.00 40.99 1.40
2422 3652 4.784045 CGCACAAAAATTTCGCGTCTAATA 59.216 37.500 5.77 0.00 40.99 0.98
2423 3653 3.602062 CGCACAAAAATTTCGCGTCTAAT 59.398 39.130 5.77 1.86 40.99 1.73
2424 3654 2.968006 CGCACAAAAATTTCGCGTCTAA 59.032 40.909 5.77 0.00 40.99 2.10
2425 3655 2.566036 CGCACAAAAATTTCGCGTCTA 58.434 42.857 5.77 0.00 40.99 2.59
2426 3656 1.394697 CGCACAAAAATTTCGCGTCT 58.605 45.000 5.77 0.00 40.99 4.18
2427 3657 0.429363 CCGCACAAAAATTTCGCGTC 59.571 50.000 5.77 0.00 44.23 5.19
2428 3658 1.544777 GCCGCACAAAAATTTCGCGT 61.545 50.000 5.77 3.35 44.23 6.01
2429 3659 1.127620 GCCGCACAAAAATTTCGCG 59.872 52.632 0.00 0.00 45.25 5.87
2430 3660 0.161446 CAGCCGCACAAAAATTTCGC 59.839 50.000 0.00 0.00 0.00 4.70
2431 3661 1.486439 ACAGCCGCACAAAAATTTCG 58.514 45.000 0.00 0.00 0.00 3.46
2432 3662 2.032979 CCAACAGCCGCACAAAAATTTC 60.033 45.455 0.00 0.00 0.00 2.17
2433 3663 1.939255 CCAACAGCCGCACAAAAATTT 59.061 42.857 0.00 0.00 0.00 1.82
2434 3664 1.137872 TCCAACAGCCGCACAAAAATT 59.862 42.857 0.00 0.00 0.00 1.82
2435 3665 0.749649 TCCAACAGCCGCACAAAAAT 59.250 45.000 0.00 0.00 0.00 1.82
2436 3666 0.102120 CTCCAACAGCCGCACAAAAA 59.898 50.000 0.00 0.00 0.00 1.94
2437 3667 0.749818 TCTCCAACAGCCGCACAAAA 60.750 50.000 0.00 0.00 0.00 2.44
2438 3668 0.537143 ATCTCCAACAGCCGCACAAA 60.537 50.000 0.00 0.00 0.00 2.83
2439 3669 1.073025 ATCTCCAACAGCCGCACAA 59.927 52.632 0.00 0.00 0.00 3.33
2440 3670 1.672030 CATCTCCAACAGCCGCACA 60.672 57.895 0.00 0.00 0.00 4.57
2441 3671 3.044059 GCATCTCCAACAGCCGCAC 62.044 63.158 0.00 0.00 0.00 5.34
2442 3672 2.747460 GCATCTCCAACAGCCGCA 60.747 61.111 0.00 0.00 0.00 5.69
2443 3673 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
2444 3674 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
2455 3685 8.457238 ACATAATTTCCCTTTCTTAGAGCATC 57.543 34.615 0.00 0.00 0.00 3.91
2456 3686 7.227512 CGACATAATTTCCCTTTCTTAGAGCAT 59.772 37.037 0.00 0.00 0.00 3.79
2457 3687 6.538742 CGACATAATTTCCCTTTCTTAGAGCA 59.461 38.462 0.00 0.00 0.00 4.26
2458 3688 6.511929 GCGACATAATTTCCCTTTCTTAGAGC 60.512 42.308 0.00 0.00 0.00 4.09
2459 3689 6.763610 AGCGACATAATTTCCCTTTCTTAGAG 59.236 38.462 0.00 0.00 0.00 2.43
2460 3690 6.538742 CAGCGACATAATTTCCCTTTCTTAGA 59.461 38.462 0.00 0.00 0.00 2.10
2471 3701 7.041780 ACCATAGATTCACAGCGACATAATTTC 60.042 37.037 0.00 0.00 0.00 2.17
2475 3705 5.049828 CACCATAGATTCACAGCGACATAA 58.950 41.667 0.00 0.00 0.00 1.90
2477 3707 3.461061 CACCATAGATTCACAGCGACAT 58.539 45.455 0.00 0.00 0.00 3.06
2483 3716 7.221452 GCATTTTAAAGCACCATAGATTCACAG 59.779 37.037 0.00 0.00 0.00 3.66
2484 3717 7.035004 GCATTTTAAAGCACCATAGATTCACA 58.965 34.615 0.00 0.00 0.00 3.58
2609 3845 1.076332 GTAAATCGTGTCGCAAGGCT 58.924 50.000 0.00 0.00 46.88 4.58
2615 3851 0.108520 TGGAGGGTAAATCGTGTCGC 60.109 55.000 0.00 0.00 0.00 5.19
2638 3874 0.859232 CACTCTCGAAAACACCACGG 59.141 55.000 0.00 0.00 0.00 4.94
2643 3880 5.659048 AGAAATCACACTCTCGAAAACAC 57.341 39.130 0.00 0.00 0.00 3.32
2649 3886 6.546034 TCCACATATAGAAATCACACTCTCGA 59.454 38.462 0.00 0.00 0.00 4.04
2653 3890 8.877779 GCATATCCACATATAGAAATCACACTC 58.122 37.037 0.00 0.00 0.00 3.51
2655 3892 8.552083 TGCATATCCACATATAGAAATCACAC 57.448 34.615 0.00 0.00 0.00 3.82
2686 3923 4.274459 GTCCCATCAGAGAATACAACATGC 59.726 45.833 0.00 0.00 0.00 4.06
2702 3945 5.564848 GCTTTTGGTTTCTTGTAGTCCCATC 60.565 44.000 0.00 0.00 0.00 3.51
2748 3991 9.733556 TGAAAGCAGTTTCCATAAGATACTTAA 57.266 29.630 0.00 0.00 41.37 1.85
2749 3992 9.162764 GTGAAAGCAGTTTCCATAAGATACTTA 57.837 33.333 0.00 0.00 41.37 2.24
2775 4018 0.525668 CCGAAGTCCGATCTTCCACG 60.526 60.000 11.76 0.00 40.21 4.94
2787 4030 0.108019 ACCCCAGTGAAACCGAAGTC 59.892 55.000 0.00 0.00 37.80 3.01
2802 4045 5.870706 TGTTTGGAAATTAAATGGAACCCC 58.129 37.500 0.00 0.00 0.00 4.95
2856 4099 4.048504 TGTACATATGTATGAGCGTGTGC 58.951 43.478 18.27 2.84 38.04 4.57
2859 4102 7.084486 AGTGTATGTACATATGTATGAGCGTG 58.916 38.462 18.27 0.00 38.63 5.34
2860 4103 7.040686 TGAGTGTATGTACATATGTATGAGCGT 60.041 37.037 18.27 9.44 38.63 5.07
2867 4110 7.907841 AGGGTTGAGTGTATGTACATATGTA 57.092 36.000 18.27 11.62 38.63 2.29
2874 4117 6.199719 GCGTTTATAGGGTTGAGTGTATGTAC 59.800 42.308 0.00 0.00 0.00 2.90
2875 4118 6.127394 TGCGTTTATAGGGTTGAGTGTATGTA 60.127 38.462 0.00 0.00 0.00 2.29
2901 4144 4.488770 TCATAGGGGATAGTGTGCATACA 58.511 43.478 16.44 2.43 0.00 2.29
2902 4145 4.621747 GCTCATAGGGGATAGTGTGCATAC 60.622 50.000 5.29 5.29 32.92 2.39
2903 4146 3.515502 GCTCATAGGGGATAGTGTGCATA 59.484 47.826 0.00 0.00 32.92 3.14
2906 4149 1.694150 TGCTCATAGGGGATAGTGTGC 59.306 52.381 0.00 0.00 0.00 4.57
2912 4155 1.729586 GGTGGTGCTCATAGGGGATA 58.270 55.000 0.00 0.00 0.00 2.59
2915 4158 2.505982 CGGTGGTGCTCATAGGGG 59.494 66.667 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.