Multiple sequence alignment - TraesCS5D01G033300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G033300 chr5D 100.000 6010 0 0 1 6010 31276035 31270026 0.000000e+00 11099.0
1 TraesCS5D01G033300 chr5B 96.109 4549 124 22 570 5097 23552752 23548236 0.000000e+00 7371.0
2 TraesCS5D01G033300 chr5B 94.595 555 28 2 2 555 579529058 579528505 0.000000e+00 857.0
3 TraesCS5D01G033300 chr5B 96.501 343 9 2 5182 5523 23548238 23547898 1.130000e-156 564.0
4 TraesCS5D01G033300 chr5B 91.304 322 27 1 5531 5851 23545857 23545536 7.150000e-119 438.0
5 TraesCS5D01G033300 chr2D 87.310 394 37 7 106 489 453867556 453867946 7.150000e-119 438.0
6 TraesCS5D01G033300 chr6B 83.243 185 30 1 4832 5015 610817270 610817454 1.040000e-37 169.0
7 TraesCS5D01G033300 chr6B 95.876 97 1 1 5092 5188 28914349 28914256 2.900000e-33 154.0
8 TraesCS5D01G033300 chr6B 80.795 151 22 6 425 571 239326254 239326107 1.770000e-20 111.0
9 TraesCS5D01G033300 chr6B 86.813 91 10 1 4087 4175 628059942 628060032 3.830000e-17 100.0
10 TraesCS5D01G033300 chr6B 79.710 138 22 6 425 559 558350918 558350784 1.780000e-15 95.3
11 TraesCS5D01G033300 chr4D 95.918 98 2 2 5090 5185 275112248 275112345 2.240000e-34 158.0
12 TraesCS5D01G033300 chr4A 95.918 98 1 1 5090 5187 668943860 668943954 8.070000e-34 156.0
13 TraesCS5D01G033300 chr4A 91.818 110 8 1 102 211 740007307 740007199 1.040000e-32 152.0
14 TraesCS5D01G033300 chr4A 93.204 103 3 2 5083 5185 728647995 728648093 1.350000e-31 148.0
15 TraesCS5D01G033300 chr4A 84.426 122 13 6 454 571 715550686 715550567 1.370000e-21 115.0
16 TraesCS5D01G033300 chr1D 95.918 98 1 2 5091 5185 269642763 269642666 8.070000e-34 156.0
17 TraesCS5D01G033300 chr1B 78.409 264 39 13 318 571 55440444 55440189 8.070000e-34 156.0
18 TraesCS5D01G033300 chr1B 96.809 94 1 1 5090 5183 229258811 229258720 8.070000e-34 156.0
19 TraesCS5D01G033300 chr1B 97.727 44 1 0 106 149 268593958 268594001 6.460000e-10 76.8
20 TraesCS5D01G033300 chr1B 100.000 28 0 0 5614 5641 328156313 328156340 1.100000e-02 52.8
21 TraesCS5D01G033300 chr7B 95.833 96 2 2 5097 5191 120167411 120167317 2.900000e-33 154.0
22 TraesCS5D01G033300 chr7B 77.679 224 36 11 4087 4303 154356530 154356746 2.270000e-24 124.0
23 TraesCS5D01G033300 chr7D 92.453 106 4 2 5092 5196 514661034 514661136 1.350000e-31 148.0
24 TraesCS5D01G033300 chr7D 100.000 28 0 0 5614 5641 50732349 50732376 1.100000e-02 52.8
25 TraesCS5D01G033300 chr6D 91.743 109 4 3 5078 5185 119341990 119342094 4.850000e-31 147.0
26 TraesCS5D01G033300 chr6D 80.000 180 30 6 385 559 100842294 100842472 1.760000e-25 128.0
27 TraesCS5D01G033300 chr1A 80.597 201 29 7 3833 4023 27511444 27511644 4.850000e-31 147.0
28 TraesCS5D01G033300 chr1A 79.358 218 32 9 318 527 402210300 402210088 2.260000e-29 141.0
29 TraesCS5D01G033300 chr4B 85.039 127 13 5 436 559 238602736 238602613 2.270000e-24 124.0
30 TraesCS5D01G033300 chr4B 100.000 28 0 0 5617 5644 582563053 582563026 1.100000e-02 52.8
31 TraesCS5D01G033300 chr3A 77.193 228 42 7 4091 4312 482905508 482905285 2.270000e-24 124.0
32 TraesCS5D01G033300 chr2A 82.609 138 14 9 427 559 23431292 23431424 4.920000e-21 113.0
33 TraesCS5D01G033300 chr3B 77.114 201 38 7 4116 4312 472121759 472121563 6.370000e-20 110.0
34 TraesCS5D01G033300 chr3B 79.856 139 21 6 425 559 347925535 347925670 1.780000e-15 95.3
35 TraesCS5D01G033300 chr2B 82.645 121 18 3 440 559 228092664 228092546 2.960000e-18 104.0
36 TraesCS5D01G033300 chr2B 96.078 51 2 0 106 156 470513925 470513875 3.860000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G033300 chr5D 31270026 31276035 6009 True 11099 11099 100.000 1 6010 1 chr5D.!!$R1 6009
1 TraesCS5D01G033300 chr5B 23545536 23552752 7216 True 2791 7371 94.638 570 5851 3 chr5B.!!$R2 5281
2 TraesCS5D01G033300 chr5B 579528505 579529058 553 True 857 857 94.595 2 555 1 chr5B.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 758 0.394565 GAGGGAGCAAGCCGTATCAT 59.605 55.000 0.00 0.0 0.00 2.45 F
1832 1852 0.179150 GTGTGTCTGCTCTCTAGGCG 60.179 60.000 0.00 0.0 0.00 5.52 F
2646 2666 2.349590 CAGAAGGTCATCATTGCGACA 58.650 47.619 7.92 0.0 33.66 4.35 F
3671 3691 0.038166 AGCCGAAAGATTCTGGGCAA 59.962 50.000 19.74 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2160 0.596859 GACCGGAGCCGTATACAAGC 60.597 60.0 9.46 5.25 37.81 4.01 R
2831 2851 0.245539 AAGTGCTGGCATGCATGAAC 59.754 50.0 30.64 20.90 45.23 3.18 R
4114 4135 0.036010 AGGGGTTCTGCAAGATGTCG 60.036 55.0 0.00 0.00 46.36 4.35 R
5619 7674 0.236187 GCAACGCACGGACATGTTTA 59.764 50.0 0.00 0.00 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.241156 CTCTCCACATCTCCAGATCCAT 58.759 50.000 0.00 0.00 31.21 3.41
73 74 0.695462 TCCATCCCCATCTCCACCTG 60.695 60.000 0.00 0.00 0.00 4.00
148 149 4.767255 GCTGCTCCACCCACCTCG 62.767 72.222 0.00 0.00 0.00 4.63
151 152 4.459089 GCTCCACCCACCTCGAGC 62.459 72.222 6.99 0.00 40.82 5.03
238 239 1.077212 CTTGGGTGCTGGGATGGAG 60.077 63.158 0.00 0.00 0.00 3.86
244 245 2.512515 GCTGGGATGGAGACGCAC 60.513 66.667 0.00 0.00 0.00 5.34
253 255 3.851128 GAGACGCACCTAGGGGGC 61.851 72.222 14.41 15.13 39.10 5.80
310 312 4.779733 GGTGGAGGGGAGAGCCGA 62.780 72.222 0.00 0.00 33.83 5.54
390 392 4.646945 TCTCGATAAGATGAGCAAAGGAGT 59.353 41.667 0.00 0.00 32.20 3.85
400 402 2.668550 AAAGGAGTGCGGGCGAAC 60.669 61.111 0.00 0.00 0.00 3.95
413 415 3.485381 GCGGGCGAACTTCTTAGAAAATC 60.485 47.826 0.00 0.00 0.00 2.17
416 418 4.457949 GGGCGAACTTCTTAGAAAATCCAA 59.542 41.667 0.00 0.00 0.00 3.53
418 420 5.392057 GGCGAACTTCTTAGAAAATCCAAGG 60.392 44.000 0.00 0.00 0.00 3.61
425 427 9.601810 ACTTCTTAGAAAATCCAAGGGTTAATT 57.398 29.630 0.00 0.00 0.00 1.40
451 453 6.037062 TGCACAATCGAATCGTTTTCTCATAT 59.963 34.615 1.52 0.00 0.00 1.78
459 461 7.977293 TCGAATCGTTTTCTCATATCCACTTAA 59.023 33.333 1.52 0.00 0.00 1.85
464 466 8.195436 TCGTTTTCTCATATCCACTTAAGTAGG 58.805 37.037 8.04 12.09 0.00 3.18
525 527 0.854705 AAAAAGCACCGACGACGTAC 59.145 50.000 0.00 0.00 37.88 3.67
592 594 7.413446 AGATTTGGGGATGAAGTATGAAAGAA 58.587 34.615 0.00 0.00 0.00 2.52
595 597 4.941263 TGGGGATGAAGTATGAAAGAAACG 59.059 41.667 0.00 0.00 0.00 3.60
596 598 5.183228 GGGGATGAAGTATGAAAGAAACGA 58.817 41.667 0.00 0.00 0.00 3.85
604 606 6.414408 AGTATGAAAGAAACGAATGCAGAG 57.586 37.500 0.00 0.00 0.00 3.35
625 627 7.352739 CAGAGTTGCTAATTTAAAACGTGACT 58.647 34.615 0.00 0.00 0.00 3.41
643 645 2.993899 GACTGGTCACTGTTATTGGACG 59.006 50.000 0.00 0.00 0.00 4.79
654 656 2.601628 TATTGGACGCGTGCGATCGT 62.602 55.000 33.13 16.34 42.83 3.73
655 657 2.601628 ATTGGACGCGTGCGATCGTA 62.602 55.000 25.86 9.90 42.83 3.43
657 659 2.355304 GGACGCGTGCGATCGTATC 61.355 63.158 20.70 6.48 42.83 2.24
672 674 1.187271 CGTATCGGCGATCGTTTGAAG 59.813 52.381 27.61 6.13 40.32 3.02
677 679 0.672401 GGCGATCGTTTGAAGGACCA 60.672 55.000 17.81 0.00 0.00 4.02
678 680 1.153353 GCGATCGTTTGAAGGACCAA 58.847 50.000 17.81 0.00 0.00 3.67
690 692 6.445357 TTGAAGGACCAAACTTACAAAGTC 57.555 37.500 0.00 0.00 41.91 3.01
696 698 2.225727 CCAAACTTACAAAGTCCGGCTC 59.774 50.000 0.00 0.00 41.91 4.70
699 701 3.870633 ACTTACAAAGTCCGGCTCTAG 57.129 47.619 0.00 0.00 37.02 2.43
706 708 3.579534 AAGTCCGGCTCTAGATACTCA 57.420 47.619 0.00 0.00 0.00 3.41
732 734 7.989416 AATTTACAGGTTATTGTCGGAGAAA 57.011 32.000 0.00 0.00 39.69 2.52
751 753 4.379243 CGTGAGGGAGCAAGCCGT 62.379 66.667 0.00 0.00 0.00 5.68
752 754 2.978824 GTGAGGGAGCAAGCCGTA 59.021 61.111 0.00 0.00 0.00 4.02
753 755 1.522569 GTGAGGGAGCAAGCCGTAT 59.477 57.895 0.00 0.00 0.00 3.06
756 758 0.394565 GAGGGAGCAAGCCGTATCAT 59.605 55.000 0.00 0.00 0.00 2.45
760 762 2.017049 GGAGCAAGCCGTATCATTGTT 58.983 47.619 0.00 0.00 0.00 2.83
766 768 3.185246 AGCCGTATCATTGTTGGAGAG 57.815 47.619 0.00 0.00 0.00 3.20
773 775 1.002134 ATTGTTGGAGAGGCCGTGG 60.002 57.895 0.00 0.00 40.66 4.94
774 776 2.484287 ATTGTTGGAGAGGCCGTGGG 62.484 60.000 0.00 0.00 40.66 4.61
794 796 1.066587 GAGCAAGCCGTATCGCTCT 59.933 57.895 0.00 0.00 45.86 4.09
811 813 2.700897 GCTCTGGCTCAACCTTATCCTA 59.299 50.000 0.00 0.00 40.22 2.94
812 814 3.326297 GCTCTGGCTCAACCTTATCCTAT 59.674 47.826 0.00 0.00 40.22 2.57
813 815 4.528596 GCTCTGGCTCAACCTTATCCTATA 59.471 45.833 0.00 0.00 40.22 1.31
814 816 5.188751 GCTCTGGCTCAACCTTATCCTATAT 59.811 44.000 0.00 0.00 40.22 0.86
900 902 2.491675 AAACCCTCAAATCGACTCCC 57.508 50.000 0.00 0.00 0.00 4.30
1116 1118 3.617540 TTGTTTGTGGCGTCTGTTATG 57.382 42.857 0.00 0.00 0.00 1.90
1311 1329 4.519437 CGCTCCTGCAGGATCGCA 62.519 66.667 37.37 17.36 45.08 5.10
1332 1350 0.741221 CTCAAGCTCAACCTACCGGC 60.741 60.000 0.00 0.00 0.00 6.13
1374 1392 5.997843 ACATGTACTTATCCCAACCTTACC 58.002 41.667 0.00 0.00 0.00 2.85
1465 1483 6.490040 ACACTTAATGTCTAATTGGTGCACTT 59.510 34.615 17.98 5.89 36.54 3.16
1503 1521 5.007626 CGGTTGTTGGTGATCCATATAGTTG 59.992 44.000 0.00 0.00 43.91 3.16
1558 1577 3.010584 ACATATCTGTGCTGAAAAGGGGT 59.989 43.478 0.00 0.00 33.22 4.95
1611 1631 5.396884 GGTGTCATTAGCCCATCTTTCTACT 60.397 44.000 0.00 0.00 0.00 2.57
1660 1680 4.397103 GCTTGATGTTGGATTGATCTGTGA 59.603 41.667 0.00 0.00 0.00 3.58
1661 1681 5.448768 GCTTGATGTTGGATTGATCTGTGAG 60.449 44.000 0.00 0.00 0.00 3.51
1785 1805 4.491676 GCGTACTGTTCTTGAGGTAATGA 58.508 43.478 0.00 0.00 0.00 2.57
1832 1852 0.179150 GTGTGTCTGCTCTCTAGGCG 60.179 60.000 0.00 0.00 0.00 5.52
1937 1957 4.416738 GGCACCCCAGGACTCAGC 62.417 72.222 0.00 0.00 0.00 4.26
1950 1970 6.459923 CCAGGACTCAGCTATATTTACCTTC 58.540 44.000 0.00 0.00 0.00 3.46
2003 2023 5.968254 TGAAACAACATCCATTGATCCATG 58.032 37.500 0.00 0.00 33.57 3.66
2140 2160 2.361757 AGAGTTCATGATCTGCTCCTCG 59.638 50.000 11.04 0.00 0.00 4.63
2149 2169 3.004839 TGATCTGCTCCTCGCTTGTATAC 59.995 47.826 0.00 0.00 40.11 1.47
2376 2396 2.853003 GCGACAGTCTTACCGAATCTTC 59.147 50.000 0.00 0.00 0.00 2.87
2646 2666 2.349590 CAGAAGGTCATCATTGCGACA 58.650 47.619 7.92 0.00 33.66 4.35
2743 2763 2.496899 TGCCTGGAGCCTCTTTAAAG 57.503 50.000 9.04 9.04 42.71 1.85
2831 2851 5.296748 CCCACCAAAATGTTGTTTCTAAGG 58.703 41.667 0.00 0.00 32.40 2.69
2857 2877 0.242825 CATGCCAGCACTTCCTGTTG 59.757 55.000 0.00 0.00 0.00 3.33
2891 2911 3.015293 CTGCCAGTAAGCGTGCACG 62.015 63.158 34.01 34.01 43.27 5.34
2956 2976 8.514136 TTAGGCAATTGTTTTAAGTGAAATCG 57.486 30.769 7.40 0.00 0.00 3.34
2957 2977 6.744112 AGGCAATTGTTTTAAGTGAAATCGA 58.256 32.000 7.40 0.00 0.00 3.59
2958 2978 7.378181 AGGCAATTGTTTTAAGTGAAATCGAT 58.622 30.769 7.40 0.00 0.00 3.59
3207 3227 9.544314 CGTAGTTAGATATTAACCTTCTCATCG 57.456 37.037 4.96 0.00 0.00 3.84
3234 3254 4.621991 CGATATCACTCCCTCAATTCGTT 58.378 43.478 3.12 0.00 0.00 3.85
3241 3261 4.697352 CACTCCCTCAATTCGTTGATTCTT 59.303 41.667 0.00 0.00 0.00 2.52
3281 3301 2.436542 AGTATTGCCAATTGCCATGCAT 59.563 40.909 7.75 0.00 38.76 3.96
3287 3307 2.821546 CCAATTGCCATGCATCTTCAG 58.178 47.619 0.00 0.00 38.76 3.02
3292 3312 1.279846 TGCCATGCATCTTCAGTGAGA 59.720 47.619 0.00 0.00 31.71 3.27
3436 3456 8.581253 AGGTTTTCTTCAAGATAGTTAATGGG 57.419 34.615 0.00 0.00 0.00 4.00
3452 3472 1.045911 TGGGGCCAACAAGGAAACAC 61.046 55.000 4.39 0.00 41.22 3.32
3454 3474 0.673985 GGGCCAACAAGGAAACACTC 59.326 55.000 4.39 0.00 41.22 3.51
3511 3531 7.030165 AGTATCTGTAAAGTTGATCTGTGTCG 58.970 38.462 0.00 0.00 0.00 4.35
3514 3534 5.242171 TCTGTAAAGTTGATCTGTGTCGGTA 59.758 40.000 0.00 0.00 0.00 4.02
3651 3671 4.430007 CTTTCACAATGGATGGATTGCTG 58.570 43.478 0.00 0.00 36.89 4.41
3655 3675 1.340248 CAATGGATGGATTGCTGAGCC 59.660 52.381 0.23 0.00 0.00 4.70
3664 3684 2.032675 GGATTGCTGAGCCGAAAGATTC 59.967 50.000 0.23 0.00 0.00 2.52
3671 3691 0.038166 AGCCGAAAGATTCTGGGCAA 59.962 50.000 19.74 0.00 0.00 4.52
3692 3712 7.118535 GGGCAAATACAATCGGTAAATTGTTTT 59.881 33.333 7.48 4.12 45.29 2.43
3727 3747 3.261137 ACAAGCTAACCTTAGGGACTGAC 59.739 47.826 2.32 0.00 41.52 3.51
3740 3760 1.134551 GGACTGACTCCAAGGCATCTC 60.135 57.143 0.00 0.00 39.21 2.75
3778 3798 0.685660 ACCAGACTCCGGAAACTTCC 59.314 55.000 5.23 0.00 44.05 3.46
3829 3849 0.242017 AGTGAGAAAATGGCTTGCGC 59.758 50.000 0.00 0.00 0.00 6.09
3922 3943 5.465056 ACCAAAAAGCACCATAAATTTCACG 59.535 36.000 0.00 0.00 0.00 4.35
3947 3968 6.007703 CCCAGATTTGTAACTTGGGACTTAA 58.992 40.000 1.59 0.00 37.29 1.85
3948 3969 6.492087 CCCAGATTTGTAACTTGGGACTTAAA 59.508 38.462 1.59 0.00 37.29 1.52
3949 3970 7.014808 CCCAGATTTGTAACTTGGGACTTAAAA 59.985 37.037 1.59 0.00 37.29 1.52
3950 3971 7.865889 CCAGATTTGTAACTTGGGACTTAAAAC 59.134 37.037 0.00 0.00 0.00 2.43
3951 3972 7.589954 CAGATTTGTAACTTGGGACTTAAAACG 59.410 37.037 0.00 0.00 0.00 3.60
3952 3973 6.998968 TTTGTAACTTGGGACTTAAAACGA 57.001 33.333 0.00 0.00 0.00 3.85
3953 3974 7.571080 TTTGTAACTTGGGACTTAAAACGAT 57.429 32.000 0.00 0.00 0.00 3.73
3954 3975 7.571080 TTGTAACTTGGGACTTAAAACGATT 57.429 32.000 0.00 0.00 0.00 3.34
3955 3976 6.961576 TGTAACTTGGGACTTAAAACGATTG 58.038 36.000 0.00 0.00 0.00 2.67
3956 3977 6.543100 TGTAACTTGGGACTTAAAACGATTGT 59.457 34.615 0.00 0.00 0.00 2.71
3961 3982 6.790285 TGGGACTTAAAACGATTGTCTTAC 57.210 37.500 0.00 0.00 0.00 2.34
4114 4135 4.646572 AGTTTTCCATCTTCAGTGACCTC 58.353 43.478 0.00 0.00 0.00 3.85
4148 4169 1.985159 ACCCCTTCTGAAGCACACATA 59.015 47.619 11.93 0.00 0.00 2.29
4152 4173 4.321230 CCCCTTCTGAAGCACACATAAAAC 60.321 45.833 11.93 0.00 0.00 2.43
4182 4203 9.610104 ATTATGTACCAAGTACCATAGTCCATA 57.390 33.333 2.63 0.00 38.14 2.74
4215 4236 9.443283 CTTTAAGAGAAAACAGTCACAATTCTG 57.557 33.333 0.00 0.00 37.65 3.02
4411 4432 7.223193 TGAAGAAAACAACTGATGCATTTGAAG 59.777 33.333 14.91 7.21 30.37 3.02
4423 4444 5.281693 TGCATTTGAAGTATCGTTGACTG 57.718 39.130 0.00 0.00 0.00 3.51
4643 4664 0.625849 ACCCCATAGCCCAACTTGAG 59.374 55.000 0.00 0.00 0.00 3.02
4669 4690 6.137559 AGAGTTCAGGTTCTAGGGTTATAGG 58.862 44.000 0.00 0.00 0.00 2.57
4794 4815 2.029110 TGGCTAAATTTCAACCTGCTGC 60.029 45.455 0.00 0.00 0.00 5.25
4833 4854 6.744537 GCTGCTTAACTTGATTGACTGTTATG 59.255 38.462 0.00 0.00 0.00 1.90
4880 4901 1.226859 GCCGATAGCACTACGCACA 60.227 57.895 0.00 0.00 46.13 4.57
4918 4939 3.457610 TGCGATACAAGATGCAGATGA 57.542 42.857 0.00 0.00 32.73 2.92
5094 5115 9.528489 AAAATAATTGTCCTTGCCTAGTAAGAA 57.472 29.630 5.75 0.00 0.00 2.52
5095 5116 8.738645 AATAATTGTCCTTGCCTAGTAAGAAG 57.261 34.615 5.75 0.00 0.00 2.85
5096 5117 5.763876 ATTGTCCTTGCCTAGTAAGAAGT 57.236 39.130 5.75 0.00 0.00 3.01
5097 5118 6.869206 ATTGTCCTTGCCTAGTAAGAAGTA 57.131 37.500 5.75 0.00 0.00 2.24
5098 5119 5.656213 TGTCCTTGCCTAGTAAGAAGTAC 57.344 43.478 5.75 0.00 0.00 2.73
5099 5120 5.331069 TGTCCTTGCCTAGTAAGAAGTACT 58.669 41.667 5.75 0.00 45.42 2.73
5100 5121 5.418209 TGTCCTTGCCTAGTAAGAAGTACTC 59.582 44.000 0.00 0.00 42.37 2.59
5101 5122 4.954826 TCCTTGCCTAGTAAGAAGTACTCC 59.045 45.833 0.00 0.00 42.37 3.85
5102 5123 4.099727 CCTTGCCTAGTAAGAAGTACTCCC 59.900 50.000 0.00 0.00 42.37 4.30
5103 5124 4.604784 TGCCTAGTAAGAAGTACTCCCT 57.395 45.455 0.00 0.00 42.37 4.20
5104 5125 4.534797 TGCCTAGTAAGAAGTACTCCCTC 58.465 47.826 0.00 0.00 42.37 4.30
5105 5126 3.890756 GCCTAGTAAGAAGTACTCCCTCC 59.109 52.174 0.00 0.00 42.37 4.30
5106 5127 4.136051 CCTAGTAAGAAGTACTCCCTCCG 58.864 52.174 0.00 0.00 42.37 4.63
5107 5128 3.735720 AGTAAGAAGTACTCCCTCCGT 57.264 47.619 0.00 0.00 38.84 4.69
5108 5129 4.044946 AGTAAGAAGTACTCCCTCCGTT 57.955 45.455 0.00 0.00 38.84 4.44
5109 5130 4.015764 AGTAAGAAGTACTCCCTCCGTTC 58.984 47.826 0.00 0.00 38.84 3.95
5110 5131 1.849977 AGAAGTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
5111 5132 1.076677 AGAAGTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 0.00 3.53
5112 5133 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
5113 5134 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5114 5135 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5115 5136 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5116 5137 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5117 5138 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5118 5139 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5119 5140 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5120 5141 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5121 5142 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5122 5143 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5123 5144 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5124 5145 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5125 5146 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5126 5147 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5127 5148 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5128 5149 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5129 5150 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5130 5151 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5131 5152 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5132 5153 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5133 5154 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5134 5155 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5135 5156 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
5136 5157 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
5137 5158 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
5138 5159 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
5139 5160 6.182507 AGATGACCCAACTTTGTACTAACA 57.817 37.500 0.00 0.00 0.00 2.41
5140 5161 6.597562 AGATGACCCAACTTTGTACTAACAA 58.402 36.000 0.00 0.00 43.85 2.83
5158 5179 8.217131 ACTAACAAAGTTAGTACAAAGTTGGG 57.783 34.615 18.09 0.00 33.35 4.12
5159 5180 7.830697 ACTAACAAAGTTAGTACAAAGTTGGGT 59.169 33.333 18.09 0.00 33.35 4.51
5160 5181 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
5161 5182 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
5162 5183 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
5163 5184 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
5164 5185 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
5165 5186 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
5166 5187 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
5167 5188 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
5168 5189 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
5169 5190 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
5170 5191 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
5171 5192 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5172 5193 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5173 5194 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5174 5195 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5175 5196 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5176 5197 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5177 5198 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5178 5199 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5179 5200 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5180 5201 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5184 5205 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5275 5297 5.887214 AAAATTCTAACAGCCCCAACTTT 57.113 34.783 0.00 0.00 0.00 2.66
5280 5302 2.174685 AACAGCCCCAACTTTCCTTT 57.825 45.000 0.00 0.00 0.00 3.11
5382 5404 7.966204 GGCGTACAAATTCTTATTTCAGCTTAA 59.034 33.333 0.00 0.00 31.63 1.85
5395 5417 4.164822 TCAGCTTAAATTTCTGCACTGC 57.835 40.909 14.87 0.00 0.00 4.40
5410 5432 4.885413 TGCACTGCAAAAATAATTCAGCT 58.115 34.783 0.00 0.00 34.76 4.24
5491 5513 2.699954 AGTCAAAATCCGGCAGTGTAG 58.300 47.619 0.00 0.00 0.00 2.74
5506 5528 4.618693 GCAGTGTAGGTGGAGTAACTTCTC 60.619 50.000 0.00 0.00 0.00 2.87
5523 5545 7.614124 AACTTCTCCGTTTTGTTTACACTAA 57.386 32.000 0.00 0.00 0.00 2.24
5524 5546 7.614124 ACTTCTCCGTTTTGTTTACACTAAA 57.386 32.000 0.00 0.00 0.00 1.85
5525 5547 8.217131 ACTTCTCCGTTTTGTTTACACTAAAT 57.783 30.769 0.00 0.00 31.54 1.40
5529 7584 9.275398 TCTCCGTTTTGTTTACACTAAATATGT 57.725 29.630 0.00 0.00 31.54 2.29
5593 7648 5.009010 ACTTTGCATCTTGTTCTCGAAACAT 59.991 36.000 11.98 0.00 0.00 2.71
5603 7658 1.269448 TCTCGAAACATGCTTTTGCCC 59.731 47.619 0.00 0.00 46.87 5.36
5604 7659 0.316841 TCGAAACATGCTTTTGCCCC 59.683 50.000 0.00 0.00 46.87 5.80
5619 7674 6.261603 GCTTTTGCCCCGTTATATTAACTAGT 59.738 38.462 0.00 0.00 40.15 2.57
5623 7678 8.661352 TTGCCCCGTTATATTAACTAGTAAAC 57.339 34.615 0.00 0.00 0.00 2.01
5635 7690 2.029649 ACTAGTAAACATGTCCGTGCGT 60.030 45.455 0.00 0.00 0.00 5.24
5644 7699 1.233950 TGTCCGTGCGTTGCAATGAT 61.234 50.000 22.81 0.00 41.47 2.45
5655 7710 5.207768 GCGTTGCAATGATGACCTAAATAG 58.792 41.667 22.81 0.00 0.00 1.73
5702 7758 7.035840 TCTACTGAAAAGTGACTTAACTCGT 57.964 36.000 0.00 2.50 0.00 4.18
5703 7759 7.137426 TCTACTGAAAAGTGACTTAACTCGTC 58.863 38.462 0.00 0.00 0.00 4.20
5729 7785 9.820229 CGATTTGCTCAACACTTATTTACTTAA 57.180 29.630 0.00 0.00 0.00 1.85
5787 7843 5.106157 ACGTGGGACAATTGATCTGAAAATC 60.106 40.000 13.59 0.00 44.16 2.17
5804 7860 8.296713 TCTGAAAATCGATAAAAAGAACCCAAG 58.703 33.333 0.00 0.00 0.00 3.61
5815 7871 7.855784 AAAAAGAACCCAAGGATTCTGTAAT 57.144 32.000 0.00 0.00 35.34 1.89
5820 7876 5.520748 ACCCAAGGATTCTGTAATCACTT 57.479 39.130 0.00 0.00 42.88 3.16
5844 7900 6.985013 TGATATACACGAAACGACAATTGAC 58.015 36.000 13.59 4.95 0.00 3.18
5851 7907 4.208355 CGAAACGACAATTGACGAATGTT 58.792 39.130 31.29 19.74 37.02 2.71
5852 7908 4.314708 CGAAACGACAATTGACGAATGTTC 59.685 41.667 31.29 23.93 37.02 3.18
5853 7909 5.418310 AAACGACAATTGACGAATGTTCT 57.582 34.783 31.29 9.05 37.02 3.01
5854 7910 6.533819 AAACGACAATTGACGAATGTTCTA 57.466 33.333 31.29 0.00 37.02 2.10
5855 7911 5.511088 ACGACAATTGACGAATGTTCTAC 57.489 39.130 31.29 0.00 37.02 2.59
5856 7912 4.387862 ACGACAATTGACGAATGTTCTACC 59.612 41.667 31.29 0.00 37.02 3.18
5857 7913 4.387559 CGACAATTGACGAATGTTCTACCA 59.612 41.667 22.86 0.00 35.37 3.25
5858 7914 5.107259 CGACAATTGACGAATGTTCTACCAA 60.107 40.000 22.86 0.00 35.37 3.67
5859 7915 6.402118 CGACAATTGACGAATGTTCTACCAAT 60.402 38.462 22.86 0.00 35.37 3.16
5860 7916 6.842163 ACAATTGACGAATGTTCTACCAATC 58.158 36.000 13.59 0.00 0.00 2.67
5861 7917 6.655003 ACAATTGACGAATGTTCTACCAATCT 59.345 34.615 13.59 0.00 0.00 2.40
5862 7918 6.668541 ATTGACGAATGTTCTACCAATCTG 57.331 37.500 0.00 0.00 0.00 2.90
5863 7919 5.147330 TGACGAATGTTCTACCAATCTGT 57.853 39.130 0.00 0.00 0.00 3.41
5864 7920 6.275494 TGACGAATGTTCTACCAATCTGTA 57.725 37.500 0.00 0.00 0.00 2.74
5865 7921 6.097356 TGACGAATGTTCTACCAATCTGTAC 58.903 40.000 0.00 0.00 0.00 2.90
5866 7922 6.071560 TGACGAATGTTCTACCAATCTGTACT 60.072 38.462 0.00 0.00 0.00 2.73
5867 7923 6.331061 ACGAATGTTCTACCAATCTGTACTC 58.669 40.000 0.00 0.00 0.00 2.59
5868 7924 5.455849 CGAATGTTCTACCAATCTGTACTCG 59.544 44.000 0.00 0.00 0.00 4.18
5869 7925 4.713824 TGTTCTACCAATCTGTACTCGG 57.286 45.455 0.00 0.00 0.00 4.63
5870 7926 4.084287 TGTTCTACCAATCTGTACTCGGT 58.916 43.478 0.00 0.00 0.00 4.69
5871 7927 4.082408 TGTTCTACCAATCTGTACTCGGTG 60.082 45.833 0.00 0.00 0.00 4.94
5872 7928 3.021695 TCTACCAATCTGTACTCGGTGG 58.978 50.000 0.00 0.00 0.00 4.61
5873 7929 0.249398 ACCAATCTGTACTCGGTGGC 59.751 55.000 0.00 0.00 0.00 5.01
5874 7930 0.249120 CCAATCTGTACTCGGTGGCA 59.751 55.000 0.00 0.00 0.00 4.92
5875 7931 1.338674 CCAATCTGTACTCGGTGGCAA 60.339 52.381 0.00 0.00 0.00 4.52
5876 7932 1.732259 CAATCTGTACTCGGTGGCAAC 59.268 52.381 0.00 0.00 0.00 4.17
5877 7933 0.249398 ATCTGTACTCGGTGGCAACC 59.751 55.000 0.00 0.00 43.76 3.77
5886 7942 2.414750 GGTGGCAACCGGGATATTG 58.585 57.895 6.32 1.59 36.51 1.90
5892 7948 2.559998 CAACCGGGATATTGCACAAC 57.440 50.000 6.32 0.00 0.00 3.32
5893 7949 1.815613 CAACCGGGATATTGCACAACA 59.184 47.619 6.32 0.00 0.00 3.33
5894 7950 1.459450 ACCGGGATATTGCACAACAC 58.541 50.000 6.32 0.00 0.00 3.32
5895 7951 1.004277 ACCGGGATATTGCACAACACT 59.996 47.619 6.32 0.00 0.00 3.55
5896 7952 2.237643 ACCGGGATATTGCACAACACTA 59.762 45.455 6.32 0.00 0.00 2.74
5897 7953 2.872245 CCGGGATATTGCACAACACTAG 59.128 50.000 0.00 0.00 0.00 2.57
5898 7954 2.287915 CGGGATATTGCACAACACTAGC 59.712 50.000 0.00 0.00 0.00 3.42
5899 7955 2.287915 GGGATATTGCACAACACTAGCG 59.712 50.000 0.00 0.00 0.00 4.26
5900 7956 3.194861 GGATATTGCACAACACTAGCGA 58.805 45.455 0.00 0.00 0.00 4.93
5901 7957 3.001330 GGATATTGCACAACACTAGCGAC 59.999 47.826 0.00 0.00 0.00 5.19
5902 7958 0.790207 ATTGCACAACACTAGCGACG 59.210 50.000 0.00 0.00 0.00 5.12
5903 7959 1.827315 TTGCACAACACTAGCGACGC 61.827 55.000 13.03 13.03 0.00 5.19
5904 7960 2.763248 CACAACACTAGCGACGCG 59.237 61.111 15.18 3.53 0.00 6.01
5905 7961 2.014554 CACAACACTAGCGACGCGT 61.015 57.895 13.85 13.85 0.00 6.01
5906 7962 2.014554 ACAACACTAGCGACGCGTG 61.015 57.895 20.70 21.37 34.92 5.34
5907 7963 2.430244 AACACTAGCGACGCGTGG 60.430 61.111 20.70 18.91 33.13 4.94
5911 7967 4.796231 CTAGCGACGCGTGGCCTT 62.796 66.667 37.14 24.76 34.71 4.35
5912 7968 4.789075 TAGCGACGCGTGGCCTTC 62.789 66.667 37.14 14.83 34.71 3.46
5920 7976 4.452733 CGTGGCCTTCCCCGTCTC 62.453 72.222 3.32 0.00 0.00 3.36
5921 7977 4.097361 GTGGCCTTCCCCGTCTCC 62.097 72.222 3.32 0.00 0.00 3.71
5922 7978 4.649705 TGGCCTTCCCCGTCTCCA 62.650 66.667 3.32 0.00 0.00 3.86
5923 7979 3.787001 GGCCTTCCCCGTCTCCAG 61.787 72.222 0.00 0.00 0.00 3.86
5924 7980 3.003763 GCCTTCCCCGTCTCCAGT 61.004 66.667 0.00 0.00 0.00 4.00
5925 7981 2.982130 CCTTCCCCGTCTCCAGTG 59.018 66.667 0.00 0.00 0.00 3.66
5926 7982 1.609501 CCTTCCCCGTCTCCAGTGA 60.610 63.158 0.00 0.00 0.00 3.41
5927 7983 0.978146 CCTTCCCCGTCTCCAGTGAT 60.978 60.000 0.00 0.00 0.00 3.06
5928 7984 0.461961 CTTCCCCGTCTCCAGTGATC 59.538 60.000 0.00 0.00 0.00 2.92
5929 7985 0.976073 TTCCCCGTCTCCAGTGATCC 60.976 60.000 0.00 0.00 0.00 3.36
5930 7986 1.685765 CCCCGTCTCCAGTGATCCA 60.686 63.158 0.00 0.00 0.00 3.41
5931 7987 1.517832 CCCGTCTCCAGTGATCCAC 59.482 63.158 0.00 0.00 34.10 4.02
5932 7988 1.517832 CCGTCTCCAGTGATCCACC 59.482 63.158 0.00 0.00 34.49 4.61
5933 7989 0.972983 CCGTCTCCAGTGATCCACCT 60.973 60.000 0.00 0.00 34.49 4.00
5934 7990 0.898320 CGTCTCCAGTGATCCACCTT 59.102 55.000 0.00 0.00 34.49 3.50
5935 7991 1.404717 CGTCTCCAGTGATCCACCTTG 60.405 57.143 0.00 0.00 34.49 3.61
5936 7992 1.625818 GTCTCCAGTGATCCACCTTGT 59.374 52.381 0.00 0.00 34.49 3.16
5937 7993 1.902508 TCTCCAGTGATCCACCTTGTC 59.097 52.381 0.00 0.00 34.49 3.18
5938 7994 1.625315 CTCCAGTGATCCACCTTGTCA 59.375 52.381 0.00 0.00 34.49 3.58
5939 7995 1.625315 TCCAGTGATCCACCTTGTCAG 59.375 52.381 0.00 0.00 34.49 3.51
5940 7996 1.446907 CAGTGATCCACCTTGTCAGC 58.553 55.000 0.00 0.00 34.49 4.26
5941 7997 1.002888 CAGTGATCCACCTTGTCAGCT 59.997 52.381 0.00 0.00 34.49 4.24
5942 7998 1.002888 AGTGATCCACCTTGTCAGCTG 59.997 52.381 7.63 7.63 34.49 4.24
5943 7999 1.002430 GTGATCCACCTTGTCAGCTGA 59.998 52.381 13.74 13.74 0.00 4.26
5944 8000 1.002430 TGATCCACCTTGTCAGCTGAC 59.998 52.381 35.04 35.04 44.97 3.51
5945 8001 1.277557 GATCCACCTTGTCAGCTGACT 59.722 52.381 38.81 21.94 44.99 3.41
5946 8002 1.131638 TCCACCTTGTCAGCTGACTT 58.868 50.000 38.81 22.13 44.99 3.01
5947 8003 1.202687 TCCACCTTGTCAGCTGACTTG 60.203 52.381 38.81 30.43 44.99 3.16
5948 8004 1.233019 CACCTTGTCAGCTGACTTGG 58.767 55.000 38.81 36.77 44.99 3.61
5949 8005 1.131638 ACCTTGTCAGCTGACTTGGA 58.868 50.000 39.50 25.36 44.99 3.53
5950 8006 1.701847 ACCTTGTCAGCTGACTTGGAT 59.298 47.619 39.50 28.58 44.99 3.41
5951 8007 2.289945 ACCTTGTCAGCTGACTTGGATC 60.290 50.000 39.50 22.13 44.99 3.36
5952 8008 2.354259 CTTGTCAGCTGACTTGGATCC 58.646 52.381 38.81 17.32 44.99 3.36
5953 8009 1.649321 TGTCAGCTGACTTGGATCCT 58.351 50.000 38.81 0.00 44.99 3.24
5954 8010 1.552337 TGTCAGCTGACTTGGATCCTC 59.448 52.381 38.81 15.97 44.99 3.71
5955 8011 0.820226 TCAGCTGACTTGGATCCTCG 59.180 55.000 13.74 6.31 0.00 4.63
5956 8012 0.820226 CAGCTGACTTGGATCCTCGA 59.180 55.000 8.42 0.00 0.00 4.04
5957 8013 1.110442 AGCTGACTTGGATCCTCGAG 58.890 55.000 14.23 5.13 0.00 4.04
5958 8014 0.103937 GCTGACTTGGATCCTCGAGG 59.896 60.000 26.32 26.32 0.00 4.63
5959 8015 0.749649 CTGACTTGGATCCTCGAGGG 59.250 60.000 30.80 16.02 35.41 4.30
5960 8016 0.041238 TGACTTGGATCCTCGAGGGT 59.959 55.000 30.80 25.99 36.25 4.34
5961 8017 0.461961 GACTTGGATCCTCGAGGGTG 59.538 60.000 30.80 14.74 36.25 4.61
5962 8018 0.041238 ACTTGGATCCTCGAGGGTGA 59.959 55.000 30.80 12.97 36.25 4.02
5963 8019 1.195115 CTTGGATCCTCGAGGGTGAA 58.805 55.000 30.80 17.23 36.25 3.18
5964 8020 1.137872 CTTGGATCCTCGAGGGTGAAG 59.862 57.143 30.80 22.11 36.25 3.02
5965 8021 0.041238 TGGATCCTCGAGGGTGAAGT 59.959 55.000 30.80 10.44 36.25 3.01
5966 8022 0.747852 GGATCCTCGAGGGTGAAGTC 59.252 60.000 30.80 17.47 36.25 3.01
5967 8023 1.686741 GGATCCTCGAGGGTGAAGTCT 60.687 57.143 30.80 6.08 36.25 3.24
5968 8024 2.423088 GGATCCTCGAGGGTGAAGTCTA 60.423 54.545 30.80 8.96 36.25 2.59
5969 8025 3.492337 GATCCTCGAGGGTGAAGTCTAT 58.508 50.000 30.80 13.66 36.25 1.98
5970 8026 3.383698 TCCTCGAGGGTGAAGTCTATT 57.616 47.619 30.80 0.00 36.25 1.73
5971 8027 3.709587 TCCTCGAGGGTGAAGTCTATTT 58.290 45.455 30.80 0.00 36.25 1.40
5972 8028 4.094476 TCCTCGAGGGTGAAGTCTATTTT 58.906 43.478 30.80 0.00 36.25 1.82
5973 8029 5.266788 TCCTCGAGGGTGAAGTCTATTTTA 58.733 41.667 30.80 2.75 36.25 1.52
5974 8030 5.718130 TCCTCGAGGGTGAAGTCTATTTTAA 59.282 40.000 30.80 2.33 36.25 1.52
5975 8031 6.211986 TCCTCGAGGGTGAAGTCTATTTTAAA 59.788 38.462 30.80 1.95 36.25 1.52
5976 8032 6.313164 CCTCGAGGGTGAAGTCTATTTTAAAC 59.687 42.308 24.62 0.00 0.00 2.01
5977 8033 6.168389 TCGAGGGTGAAGTCTATTTTAAACC 58.832 40.000 0.00 0.00 0.00 3.27
5978 8034 5.353400 CGAGGGTGAAGTCTATTTTAAACCC 59.647 44.000 0.00 0.00 45.32 4.11
5980 8036 6.510879 GGGTGAAGTCTATTTTAAACCCTG 57.489 41.667 0.00 0.00 42.32 4.45
5981 8037 6.243148 GGGTGAAGTCTATTTTAAACCCTGA 58.757 40.000 0.00 0.00 42.32 3.86
5982 8038 6.374613 GGGTGAAGTCTATTTTAAACCCTGAG 59.625 42.308 0.00 0.00 42.32 3.35
5983 8039 6.374613 GGTGAAGTCTATTTTAAACCCTGAGG 59.625 42.308 0.00 0.00 40.04 3.86
5994 8050 1.153549 CCCTGAGGTTGTAGAGCGC 60.154 63.158 0.00 0.00 0.00 5.92
5995 8051 1.517257 CCTGAGGTTGTAGAGCGCG 60.517 63.158 0.00 0.00 0.00 6.86
5996 8052 1.506718 CTGAGGTTGTAGAGCGCGA 59.493 57.895 12.10 0.00 0.00 5.87
5997 8053 0.798771 CTGAGGTTGTAGAGCGCGAC 60.799 60.000 12.10 2.22 0.00 5.19
5998 8054 1.211969 GAGGTTGTAGAGCGCGACA 59.788 57.895 12.10 1.06 0.00 4.35
5999 8055 1.071567 GAGGTTGTAGAGCGCGACAC 61.072 60.000 12.10 6.82 29.02 3.67
6000 8056 1.372499 GGTTGTAGAGCGCGACACA 60.372 57.895 12.10 9.23 29.02 3.72
6001 8057 0.942410 GGTTGTAGAGCGCGACACAA 60.942 55.000 12.10 16.31 29.02 3.33
6002 8058 0.856641 GTTGTAGAGCGCGACACAAA 59.143 50.000 20.15 3.41 33.04 2.83
6003 8059 1.459592 GTTGTAGAGCGCGACACAAAT 59.540 47.619 20.15 0.00 33.04 2.32
6004 8060 1.067693 TGTAGAGCGCGACACAAATG 58.932 50.000 12.10 0.00 0.00 2.32
6005 8061 1.336424 TGTAGAGCGCGACACAAATGA 60.336 47.619 12.10 0.00 0.00 2.57
6006 8062 1.724623 GTAGAGCGCGACACAAATGAA 59.275 47.619 12.10 0.00 0.00 2.57
6007 8063 0.512952 AGAGCGCGACACAAATGAAC 59.487 50.000 12.10 0.00 0.00 3.18
6008 8064 0.452784 GAGCGCGACACAAATGAACC 60.453 55.000 12.10 0.00 0.00 3.62
6009 8065 0.884704 AGCGCGACACAAATGAACCT 60.885 50.000 12.10 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.692368 GGCAGGTGGAGATGGGGA 60.692 66.667 0.00 0.00 0.00 4.81
73 74 2.762234 GCAGCAGAGATGTGCAGGC 61.762 63.158 4.67 4.06 46.60 4.85
151 152 1.035932 TTCCCTCTTCCTAGCGTCGG 61.036 60.000 0.00 0.00 0.00 4.79
356 358 3.024547 TCTTATCGAGAAGGTGGAGGTG 58.975 50.000 19.05 0.00 0.00 4.00
390 392 0.319083 TTCTAAGAAGTTCGCCCGCA 59.681 50.000 0.00 0.00 0.00 5.69
398 400 9.601810 ATTAACCCTTGGATTTTCTAAGAAGTT 57.398 29.630 2.57 7.75 37.16 2.66
413 415 3.925913 CGATTGTGCAAATTAACCCTTGG 59.074 43.478 0.00 0.00 0.00 3.61
416 418 5.650543 GATTCGATTGTGCAAATTAACCCT 58.349 37.500 0.00 0.00 0.00 4.34
418 420 5.092781 ACGATTCGATTGTGCAAATTAACC 58.907 37.500 13.95 0.00 0.00 2.85
425 427 4.024472 TGAGAAAACGATTCGATTGTGCAA 60.024 37.500 13.95 0.00 0.00 4.08
451 453 2.232941 CCGCAGTTCCTACTTAAGTGGA 59.767 50.000 19.63 18.47 30.76 4.02
459 461 1.053424 TTCAACCCGCAGTTCCTACT 58.947 50.000 0.00 0.00 36.18 2.57
464 466 2.151202 TGAGAATTCAACCCGCAGTTC 58.849 47.619 8.44 0.00 36.18 3.01
513 515 2.047655 TACCCGTACGTCGTCGGT 60.048 61.111 24.52 19.71 44.51 4.69
555 557 7.523415 TCATCCCCAAATCTTTACCTAATACC 58.477 38.462 0.00 0.00 0.00 2.73
556 558 8.990163 TTCATCCCCAAATCTTTACCTAATAC 57.010 34.615 0.00 0.00 0.00 1.89
557 559 8.787818 ACTTCATCCCCAAATCTTTACCTAATA 58.212 33.333 0.00 0.00 0.00 0.98
558 560 7.652554 ACTTCATCCCCAAATCTTTACCTAAT 58.347 34.615 0.00 0.00 0.00 1.73
559 561 7.039722 ACTTCATCCCCAAATCTTTACCTAA 57.960 36.000 0.00 0.00 0.00 2.69
560 562 6.652205 ACTTCATCCCCAAATCTTTACCTA 57.348 37.500 0.00 0.00 0.00 3.08
561 563 5.536497 ACTTCATCCCCAAATCTTTACCT 57.464 39.130 0.00 0.00 0.00 3.08
562 564 7.060421 TCATACTTCATCCCCAAATCTTTACC 58.940 38.462 0.00 0.00 0.00 2.85
563 565 8.519799 TTCATACTTCATCCCCAAATCTTTAC 57.480 34.615 0.00 0.00 0.00 2.01
564 566 9.189156 CTTTCATACTTCATCCCCAAATCTTTA 57.811 33.333 0.00 0.00 0.00 1.85
565 567 7.895429 TCTTTCATACTTCATCCCCAAATCTTT 59.105 33.333 0.00 0.00 0.00 2.52
566 568 7.413446 TCTTTCATACTTCATCCCCAAATCTT 58.587 34.615 0.00 0.00 0.00 2.40
567 569 6.973642 TCTTTCATACTTCATCCCCAAATCT 58.026 36.000 0.00 0.00 0.00 2.40
568 570 7.645058 TTCTTTCATACTTCATCCCCAAATC 57.355 36.000 0.00 0.00 0.00 2.17
569 571 7.362920 CGTTTCTTTCATACTTCATCCCCAAAT 60.363 37.037 0.00 0.00 0.00 2.32
570 572 6.072175 CGTTTCTTTCATACTTCATCCCCAAA 60.072 38.462 0.00 0.00 0.00 3.28
571 573 5.414454 CGTTTCTTTCATACTTCATCCCCAA 59.586 40.000 0.00 0.00 0.00 4.12
572 574 4.941263 CGTTTCTTTCATACTTCATCCCCA 59.059 41.667 0.00 0.00 0.00 4.96
604 606 6.203647 ACCAGTCACGTTTTAAATTAGCAAC 58.796 36.000 0.00 0.00 0.00 4.17
625 627 1.803334 GCGTCCAATAACAGTGACCA 58.197 50.000 0.00 0.00 0.00 4.02
633 635 0.043310 GATCGCACGCGTCCAATAAC 60.043 55.000 9.86 0.00 40.74 1.89
638 640 2.976881 GATACGATCGCACGCGTCCA 62.977 60.000 16.60 0.00 41.49 4.02
654 656 1.406180 TCCTTCAAACGATCGCCGATA 59.594 47.619 16.60 0.00 41.76 2.92
655 657 0.174845 TCCTTCAAACGATCGCCGAT 59.825 50.000 16.60 0.00 41.76 4.18
657 659 1.693083 GGTCCTTCAAACGATCGCCG 61.693 60.000 16.60 3.65 45.44 6.46
658 660 0.672401 TGGTCCTTCAAACGATCGCC 60.672 55.000 16.60 5.31 0.00 5.54
672 674 2.551032 CCGGACTTTGTAAGTTTGGTCC 59.449 50.000 0.00 0.00 43.03 4.46
677 679 3.487120 AGAGCCGGACTTTGTAAGTTT 57.513 42.857 5.05 0.00 43.03 2.66
678 680 3.830755 TCTAGAGCCGGACTTTGTAAGTT 59.169 43.478 5.05 0.00 43.03 2.66
680 682 4.657436 ATCTAGAGCCGGACTTTGTAAG 57.343 45.455 5.05 0.00 0.00 2.34
683 685 3.633065 GAGTATCTAGAGCCGGACTTTGT 59.367 47.826 5.05 0.00 0.00 2.83
684 686 3.632604 TGAGTATCTAGAGCCGGACTTTG 59.367 47.826 5.05 0.75 34.92 2.77
690 692 6.984474 TGTAAATTTTGAGTATCTAGAGCCGG 59.016 38.462 0.00 0.00 34.92 6.13
706 708 7.989416 TCTCCGACAATAACCTGTAAATTTT 57.011 32.000 0.00 0.00 0.00 1.82
732 734 4.021925 GGCTTGCTCCCTCACGGT 62.022 66.667 0.00 0.00 0.00 4.83
751 753 1.837439 ACGGCCTCTCCAACAATGATA 59.163 47.619 0.00 0.00 34.01 2.15
752 754 0.620556 ACGGCCTCTCCAACAATGAT 59.379 50.000 0.00 0.00 34.01 2.45
753 755 0.321564 CACGGCCTCTCCAACAATGA 60.322 55.000 0.00 0.00 34.01 2.57
756 758 2.429930 CCACGGCCTCTCCAACAA 59.570 61.111 0.00 0.00 34.01 2.83
773 775 2.280186 CGATACGGCTTGCTCCCC 60.280 66.667 0.00 0.00 0.00 4.81
774 776 2.967615 GCGATACGGCTTGCTCCC 60.968 66.667 0.00 0.00 0.00 4.30
794 796 7.387265 TGAAATATAGGATAAGGTTGAGCCA 57.613 36.000 0.00 0.00 40.61 4.75
811 813 5.501156 GACTGGACCCTCTTGTTGAAATAT 58.499 41.667 0.00 0.00 0.00 1.28
812 814 4.263331 GGACTGGACCCTCTTGTTGAAATA 60.263 45.833 0.00 0.00 0.00 1.40
813 815 3.498661 GGACTGGACCCTCTTGTTGAAAT 60.499 47.826 0.00 0.00 0.00 2.17
814 816 2.158667 GGACTGGACCCTCTTGTTGAAA 60.159 50.000 0.00 0.00 0.00 2.69
963 965 0.313672 CAGGAGCGAGTAGATCTGGC 59.686 60.000 5.18 3.69 45.98 4.85
1116 1118 3.435671 GGAATACTTACACACACACCAGC 59.564 47.826 0.00 0.00 0.00 4.85
1230 1248 2.480587 GCATAACATACCCCCAAAACGC 60.481 50.000 0.00 0.00 0.00 4.84
1436 1454 7.230510 TGCACCAATTAGACATTAAGTGTTCTT 59.769 33.333 0.00 0.00 42.36 2.52
1465 1483 1.070105 AACCGGCTTAACACAGCGA 59.930 52.632 0.00 0.00 41.12 4.93
1585 1605 3.567478 AAGATGGGCTAATGACACCTC 57.433 47.619 0.00 0.00 0.00 3.85
1611 1631 3.053077 CCTTATATCACCCAGTTCCCCA 58.947 50.000 0.00 0.00 0.00 4.96
1785 1805 9.490083 TTTAAGGCTAAGTAAGTAGGAGAAGAT 57.510 33.333 0.00 0.00 0.00 2.40
1803 1823 3.142174 GAGCAGACACACTTTTAAGGCT 58.858 45.455 0.00 0.00 0.00 4.58
1832 1852 5.897377 AATGGAGTTGTAACATTACAGCC 57.103 39.130 13.14 11.87 43.28 4.85
1867 1887 4.707934 TCGTAGTACAATGGAATCCTGTGA 59.292 41.667 0.00 0.00 0.00 3.58
1950 1970 7.870826 TGGATGTTGTACAACTACAGATTTTG 58.129 34.615 32.58 0.00 37.28 2.44
2003 2023 3.281727 TCATGCTCATAAAGGGACCAC 57.718 47.619 0.00 0.00 0.00 4.16
2140 2160 0.596859 GACCGGAGCCGTATACAAGC 60.597 60.000 9.46 5.25 37.81 4.01
2246 2266 4.275936 AGTCATGCACCTTGTTAAGACAAC 59.724 41.667 0.00 0.00 40.71 3.32
2451 2471 4.021280 TCGTAGTTGTAGCCCAAACATACA 60.021 41.667 0.00 0.00 34.07 2.29
2743 2763 2.019984 GATTGCATCCCCAACTCTGTC 58.980 52.381 0.00 0.00 0.00 3.51
2790 2810 0.250727 GGCTGTGTACCTCTTTGGCA 60.251 55.000 0.00 0.00 40.22 4.92
2831 2851 0.245539 AAGTGCTGGCATGCATGAAC 59.754 50.000 30.64 20.90 45.23 3.18
2871 2891 1.070615 TGCACGCTTACTGGCAGAA 59.929 52.632 23.66 10.15 0.00 3.02
2872 2892 1.667830 GTGCACGCTTACTGGCAGA 60.668 57.895 23.66 1.56 36.86 4.26
2883 2903 0.433492 CTACAGTTACACGTGCACGC 59.567 55.000 37.35 21.31 44.43 5.34
3064 3084 2.900546 TGTCTTGGGTTTTGTTGTTGGT 59.099 40.909 0.00 0.00 0.00 3.67
3077 3097 8.086851 CCAAAGATAAAAATTGTTGTCTTGGG 57.913 34.615 20.94 20.94 41.02 4.12
3157 3177 7.436970 ACGTGGGTTTGTAAAATTTGAAATCTC 59.563 33.333 0.00 0.00 0.00 2.75
3177 3197 7.949434 AGAAGGTTAATATCTAACTACGTGGG 58.051 38.462 3.26 0.00 0.00 4.61
3207 3227 1.069204 TGAGGGAGTGATATCGCTTGC 59.931 52.381 19.47 8.17 42.04 4.01
3214 3234 5.614324 TCAACGAATTGAGGGAGTGATAT 57.386 39.130 0.00 0.00 40.01 1.63
3234 3254 7.234782 TGAAAGGGTGACTAGACTTAAGAATCA 59.765 37.037 10.09 2.52 0.00 2.57
3241 3261 7.578955 GCAATACTGAAAGGGTGACTAGACTTA 60.579 40.741 0.00 0.00 39.30 2.24
3281 3301 3.554337 GGCCGTTTAGTTCTCACTGAAGA 60.554 47.826 0.00 0.00 35.01 2.87
3287 3307 1.066136 GACGGCCGTTTAGTTCTCAC 58.934 55.000 34.65 11.73 0.00 3.51
3292 3312 1.202557 TGTCTTGACGGCCGTTTAGTT 60.203 47.619 34.65 8.11 0.00 2.24
3339 3359 5.363562 TCAGATCATGCCTCTTATTGTGT 57.636 39.130 0.00 0.00 0.00 3.72
3436 3456 1.338020 CAGAGTGTTTCCTTGTTGGCC 59.662 52.381 0.00 0.00 35.26 5.36
3452 3472 1.264288 GGTTTCTTGCGGAACACAGAG 59.736 52.381 0.00 0.00 33.13 3.35
3454 3474 1.308998 AGGTTTCTTGCGGAACACAG 58.691 50.000 0.00 0.00 33.13 3.66
3537 3557 7.112779 AGTATTTGAGGTTAGGTTTCTGATGG 58.887 38.462 0.00 0.00 0.00 3.51
3651 3671 0.392998 TGCCCAGAATCTTTCGGCTC 60.393 55.000 12.34 0.00 37.17 4.70
3655 3675 4.963276 TGTATTTGCCCAGAATCTTTCG 57.037 40.909 0.00 0.00 34.02 3.46
3664 3684 4.974368 TTTACCGATTGTATTTGCCCAG 57.026 40.909 0.00 0.00 0.00 4.45
3699 3719 7.494952 CAGTCCCTAAGGTTAGCTTGTTAATAC 59.505 40.741 6.95 0.00 0.00 1.89
3727 3747 4.386867 TTTAGTACGAGATGCCTTGGAG 57.613 45.455 0.00 0.00 0.00 3.86
3778 3798 7.915397 TGATTTTTCTTCGAGAAGTTTTTCCTG 59.085 33.333 12.01 0.00 35.37 3.86
3829 3849 3.001330 GTCTTGTTATTCGAATCCCTGCG 59.999 47.826 15.25 0.70 0.00 5.18
3879 3899 7.490657 TTTGGTCTCCATTAGTAGCTTTCTA 57.509 36.000 0.00 0.00 31.53 2.10
3891 3911 2.676748 TGGTGCTTTTTGGTCTCCATT 58.323 42.857 0.00 0.00 31.53 3.16
3922 3943 2.492088 GTCCCAAGTTACAAATCTGGGC 59.508 50.000 0.30 0.00 35.23 5.36
3947 3968 8.813282 GGAAAAATTTGTGTAAGACAATCGTTT 58.187 29.630 0.00 0.00 44.23 3.60
3948 3969 7.976734 TGGAAAAATTTGTGTAAGACAATCGTT 59.023 29.630 0.00 0.00 44.23 3.85
3949 3970 7.484975 TGGAAAAATTTGTGTAAGACAATCGT 58.515 30.769 0.00 0.00 44.23 3.73
3950 3971 7.922505 TGGAAAAATTTGTGTAAGACAATCG 57.077 32.000 0.00 0.00 44.23 3.34
3951 3972 8.764287 CCTTGGAAAAATTTGTGTAAGACAATC 58.236 33.333 0.00 0.00 44.23 2.67
3952 3973 8.264347 ACCTTGGAAAAATTTGTGTAAGACAAT 58.736 29.630 0.00 0.00 44.23 2.71
3953 3974 7.616313 ACCTTGGAAAAATTTGTGTAAGACAA 58.384 30.769 0.00 0.00 43.11 3.18
3954 3975 7.176589 ACCTTGGAAAAATTTGTGTAAGACA 57.823 32.000 0.00 0.00 0.00 3.41
3955 3976 9.589111 TTAACCTTGGAAAAATTTGTGTAAGAC 57.411 29.630 0.00 0.00 0.00 3.01
3956 3977 9.810545 CTTAACCTTGGAAAAATTTGTGTAAGA 57.189 29.630 0.00 0.00 0.00 2.10
3961 3982 6.760770 TGAGCTTAACCTTGGAAAAATTTGTG 59.239 34.615 0.00 0.00 0.00 3.33
3966 3987 8.650143 TTAGATGAGCTTAACCTTGGAAAAAT 57.350 30.769 0.00 0.00 0.00 1.82
4114 4135 0.036010 AGGGGTTCTGCAAGATGTCG 60.036 55.000 0.00 0.00 46.36 4.35
4148 4169 8.927675 TGGTACTTGGTACATAATCTTGTTTT 57.072 30.769 9.56 0.00 40.41 2.43
4152 4173 9.477484 GACTATGGTACTTGGTACATAATCTTG 57.523 37.037 9.56 0.00 40.41 3.02
4182 4203 8.994170 GTGACTGTTTTCTCTTAAAGATTAGCT 58.006 33.333 0.00 0.00 32.82 3.32
4303 4324 5.523916 AGAAAACACTACAGCTGTAAGTGTG 59.476 40.000 35.93 32.87 39.91 3.82
4304 4325 5.671493 AGAAAACACTACAGCTGTAAGTGT 58.329 37.500 33.18 33.18 40.78 3.55
4404 4425 6.348540 GGAAAGCAGTCAACGATACTTCAAAT 60.349 38.462 0.00 0.00 0.00 2.32
4411 4432 3.746492 ACAAGGAAAGCAGTCAACGATAC 59.254 43.478 0.00 0.00 0.00 2.24
4423 4444 1.238439 TAGCAGCACACAAGGAAAGC 58.762 50.000 0.00 0.00 0.00 3.51
4483 4504 6.635755 TGTTGTTCTTTTGGGAGTTTTTAGG 58.364 36.000 0.00 0.00 0.00 2.69
4516 4537 9.082313 ACAGAATATGAATTGTCAACTTCCTTT 57.918 29.630 0.00 0.00 37.30 3.11
4559 4580 8.696410 TTTCAGTTTACAAAGAAACATCAACC 57.304 30.769 2.23 0.00 41.00 3.77
4643 4664 4.893829 AACCCTAGAACCTGAACTCTTC 57.106 45.455 0.00 0.00 0.00 2.87
4669 4690 4.142513 GGCTGGAACAAATCATCTCAACTC 60.143 45.833 0.00 0.00 38.70 3.01
4794 4815 5.237344 AGTTAAGCAGCTGTTGTGAAAGTAG 59.763 40.000 16.64 0.00 0.00 2.57
5092 5113 1.553706 TGGAACGGAGGGAGTACTTC 58.446 55.000 0.00 0.00 0.00 3.01
5093 5114 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
5094 5115 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
5095 5116 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
5096 5117 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5097 5118 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5098 5119 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5099 5120 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5100 5121 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5101 5122 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5102 5123 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5103 5124 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5104 5125 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5105 5126 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5106 5127 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5107 5128 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5108 5129 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5109 5130 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5110 5131 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
5111 5132 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
5112 5133 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
5113 5134 8.380099 TGTTAGTACAAAGTTGGGTCATCTATT 58.620 33.333 0.00 0.00 0.00 1.73
5114 5135 7.913789 TGTTAGTACAAAGTTGGGTCATCTAT 58.086 34.615 0.00 0.00 0.00 1.98
5115 5136 7.305813 TGTTAGTACAAAGTTGGGTCATCTA 57.694 36.000 0.00 0.00 0.00 1.98
5116 5137 6.182507 TGTTAGTACAAAGTTGGGTCATCT 57.817 37.500 0.00 0.00 0.00 2.90
5117 5138 6.870971 TTGTTAGTACAAAGTTGGGTCATC 57.129 37.500 0.00 0.00 41.15 2.92
5132 5153 9.328845 CCCAACTTTGTACTAACTTTGTTAGTA 57.671 33.333 20.00 20.00 35.54 1.82
5133 5154 7.830697 ACCCAACTTTGTACTAACTTTGTTAGT 59.169 33.333 21.62 21.62 39.32 2.24
5134 5155 8.217131 ACCCAACTTTGTACTAACTTTGTTAG 57.783 34.615 13.85 13.85 0.00 2.34
5135 5156 7.828223 TGACCCAACTTTGTACTAACTTTGTTA 59.172 33.333 0.00 0.00 0.00 2.41
5136 5157 6.660094 TGACCCAACTTTGTACTAACTTTGTT 59.340 34.615 0.00 0.00 0.00 2.83
5137 5158 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
5138 5159 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
5139 5160 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
5140 5161 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
5141 5162 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
5142 5163 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
5143 5164 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
5144 5165 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
5145 5166 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
5146 5167 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5147 5168 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5148 5169 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5149 5170 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5150 5171 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5151 5172 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5152 5173 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5153 5174 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5154 5175 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5155 5176 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5156 5177 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5157 5178 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5158 5179 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5159 5180 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5160 5181 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5161 5182 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5162 5183 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5163 5184 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5164 5185 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
5165 5186 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
5166 5187 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
5167 5188 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
5168 5189 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
5169 5190 1.946984 AACATACTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
5170 5191 2.235402 TCAAACATACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
5171 5192 3.604875 TCAAACATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
5172 5193 4.261801 CATTCAAACATACTCCCTCCGTT 58.738 43.478 0.00 0.00 0.00 4.44
5173 5194 3.263425 ACATTCAAACATACTCCCTCCGT 59.737 43.478 0.00 0.00 0.00 4.69
5174 5195 3.871594 GACATTCAAACATACTCCCTCCG 59.128 47.826 0.00 0.00 0.00 4.63
5175 5196 4.200092 GGACATTCAAACATACTCCCTCC 58.800 47.826 0.00 0.00 0.00 4.30
5176 5197 4.843728 TGGACATTCAAACATACTCCCTC 58.156 43.478 0.00 0.00 0.00 4.30
5177 5198 4.927267 TGGACATTCAAACATACTCCCT 57.073 40.909 0.00 0.00 0.00 4.20
5178 5199 4.157840 GGTTGGACATTCAAACATACTCCC 59.842 45.833 0.00 0.00 34.67 4.30
5179 5200 4.764823 TGGTTGGACATTCAAACATACTCC 59.235 41.667 0.00 0.00 39.17 3.85
5180 5201 5.335661 GGTGGTTGGACATTCAAACATACTC 60.336 44.000 0.00 0.00 44.78 2.59
5184 5205 3.575805 AGGTGGTTGGACATTCAAACAT 58.424 40.909 0.00 0.00 44.78 2.71
5275 5297 2.548493 GCTGCCATTTTGCTCAAAAGGA 60.548 45.455 17.86 5.26 42.61 3.36
5280 5302 1.330234 TCAGCTGCCATTTTGCTCAA 58.670 45.000 9.47 0.00 34.51 3.02
5382 5404 8.380743 TGAATTATTTTTGCAGTGCAGAAATT 57.619 26.923 36.80 26.06 46.26 1.82
5395 5417 7.605410 AAGGCATGAAGCTGAATTATTTTTG 57.395 32.000 0.00 0.00 44.79 2.44
5427 5449 5.798132 CAATCCTGCTCTACTTATGGCATA 58.202 41.667 2.32 2.32 34.12 3.14
5428 5450 4.649692 CAATCCTGCTCTACTTATGGCAT 58.350 43.478 4.88 4.88 34.12 4.40
5567 7622 3.727726 TCGAGAACAAGATGCAAAGTGA 58.272 40.909 0.00 0.00 0.00 3.41
5593 7648 4.951094 AGTTAATATAACGGGGCAAAAGCA 59.049 37.500 0.00 0.00 0.00 3.91
5619 7674 0.236187 GCAACGCACGGACATGTTTA 59.764 50.000 0.00 0.00 0.00 2.01
5623 7678 1.066656 CATTGCAACGCACGGACATG 61.067 55.000 0.00 0.00 38.71 3.21
5628 7683 0.794229 GTCATCATTGCAACGCACGG 60.794 55.000 0.00 0.00 38.71 4.94
5629 7684 0.794229 GGTCATCATTGCAACGCACG 60.794 55.000 0.00 0.00 38.71 5.34
5700 7756 2.949714 AAGTGTTGAGCAAATCGACG 57.050 45.000 0.00 0.00 44.34 5.12
5702 7758 7.667043 AGTAAATAAGTGTTGAGCAAATCGA 57.333 32.000 0.00 0.00 0.00 3.59
5703 7759 9.820229 TTAAGTAAATAAGTGTTGAGCAAATCG 57.180 29.630 0.00 0.00 0.00 3.34
5749 7805 5.663456 TGTCCCACGTCTTATTGTATTACC 58.337 41.667 0.00 0.00 0.00 2.85
5787 7843 6.151144 ACAGAATCCTTGGGTTCTTTTTATCG 59.849 38.462 12.12 3.04 32.60 2.92
5804 7860 8.916654 CGTGTATATCAAGTGATTACAGAATCC 58.083 37.037 0.00 0.00 40.81 3.01
5815 7871 5.701855 TGTCGTTTCGTGTATATCAAGTGA 58.298 37.500 0.00 0.00 0.00 3.41
5820 7876 6.237358 CGTCAATTGTCGTTTCGTGTATATCA 60.237 38.462 15.55 0.00 0.00 2.15
5828 7884 3.246699 ACATTCGTCAATTGTCGTTTCGT 59.753 39.130 21.35 13.10 0.00 3.85
5844 7900 5.455849 CGAGTACAGATTGGTAGAACATTCG 59.544 44.000 0.00 0.00 0.00 3.34
5851 7907 3.021695 CCACCGAGTACAGATTGGTAGA 58.978 50.000 0.00 0.00 32.33 2.59
5852 7908 2.481449 GCCACCGAGTACAGATTGGTAG 60.481 54.545 0.00 0.00 32.33 3.18
5853 7909 1.479323 GCCACCGAGTACAGATTGGTA 59.521 52.381 0.00 0.00 32.33 3.25
5854 7910 0.249398 GCCACCGAGTACAGATTGGT 59.751 55.000 0.00 0.00 34.56 3.67
5855 7911 0.249120 TGCCACCGAGTACAGATTGG 59.751 55.000 0.00 0.00 0.00 3.16
5856 7912 1.732259 GTTGCCACCGAGTACAGATTG 59.268 52.381 0.00 0.00 0.00 2.67
5857 7913 1.338769 GGTTGCCACCGAGTACAGATT 60.339 52.381 0.00 0.00 31.60 2.40
5858 7914 0.249398 GGTTGCCACCGAGTACAGAT 59.751 55.000 0.00 0.00 31.60 2.90
5859 7915 1.669440 GGTTGCCACCGAGTACAGA 59.331 57.895 0.00 0.00 31.60 3.41
5860 7916 4.278956 GGTTGCCACCGAGTACAG 57.721 61.111 0.00 0.00 31.60 2.74
5868 7924 1.734388 GCAATATCCCGGTTGCCACC 61.734 60.000 14.83 0.00 43.65 4.61
5869 7925 1.733526 GCAATATCCCGGTTGCCAC 59.266 57.895 14.83 0.00 43.65 5.01
5870 7926 4.251246 GCAATATCCCGGTTGCCA 57.749 55.556 14.83 0.00 43.65 4.92
5873 7929 1.815613 TGTTGTGCAATATCCCGGTTG 59.184 47.619 0.00 0.00 0.00 3.77
5874 7930 1.816224 GTGTTGTGCAATATCCCGGTT 59.184 47.619 0.00 0.00 0.00 4.44
5875 7931 1.004277 AGTGTTGTGCAATATCCCGGT 59.996 47.619 0.00 0.00 0.00 5.28
5876 7932 1.750193 AGTGTTGTGCAATATCCCGG 58.250 50.000 0.00 0.00 0.00 5.73
5877 7933 2.287915 GCTAGTGTTGTGCAATATCCCG 59.712 50.000 0.00 0.00 0.00 5.14
5878 7934 2.287915 CGCTAGTGTTGTGCAATATCCC 59.712 50.000 0.00 0.00 0.00 3.85
5879 7935 3.001330 GTCGCTAGTGTTGTGCAATATCC 59.999 47.826 2.66 0.00 0.00 2.59
5880 7936 3.301835 CGTCGCTAGTGTTGTGCAATATC 60.302 47.826 2.66 0.00 0.00 1.63
5881 7937 2.603110 CGTCGCTAGTGTTGTGCAATAT 59.397 45.455 2.66 0.00 0.00 1.28
5882 7938 1.989864 CGTCGCTAGTGTTGTGCAATA 59.010 47.619 2.66 0.00 0.00 1.90
5883 7939 0.790207 CGTCGCTAGTGTTGTGCAAT 59.210 50.000 2.66 0.00 0.00 3.56
5884 7940 1.827315 GCGTCGCTAGTGTTGTGCAA 61.827 55.000 10.68 0.00 0.00 4.08
5885 7941 2.307309 GCGTCGCTAGTGTTGTGCA 61.307 57.895 10.68 0.00 0.00 4.57
5886 7942 2.470286 GCGTCGCTAGTGTTGTGC 59.530 61.111 10.68 0.08 0.00 4.57
5887 7943 2.014554 ACGCGTCGCTAGTGTTGTG 61.015 57.895 16.36 6.39 0.00 3.33
5888 7944 2.014554 CACGCGTCGCTAGTGTTGT 61.015 57.895 9.86 0.35 0.00 3.32
5889 7945 2.716828 CCACGCGTCGCTAGTGTTG 61.717 63.158 9.86 0.00 34.34 3.33
5890 7946 2.430244 CCACGCGTCGCTAGTGTT 60.430 61.111 9.86 0.00 34.34 3.32
5894 7950 4.796231 AAGGCCACGCGTCGCTAG 62.796 66.667 27.26 7.71 0.00 3.42
5895 7951 4.789075 GAAGGCCACGCGTCGCTA 62.789 66.667 27.26 0.00 0.00 4.26
5904 7960 4.097361 GGAGACGGGGAAGGCCAC 62.097 72.222 5.01 0.00 35.15 5.01
5905 7961 4.649705 TGGAGACGGGGAAGGCCA 62.650 66.667 5.01 0.00 35.15 5.36
5906 7962 3.787001 CTGGAGACGGGGAAGGCC 61.787 72.222 0.00 0.00 0.00 5.19
5907 7963 3.003763 ACTGGAGACGGGGAAGGC 61.004 66.667 0.00 0.00 42.76 4.35
5908 7964 2.982130 CACTGGAGACGGGGAAGG 59.018 66.667 0.00 0.00 45.83 3.46
5912 7968 1.685765 TGGATCACTGGAGACGGGG 60.686 63.158 0.00 0.00 43.56 5.73
5913 7969 1.517832 GTGGATCACTGGAGACGGG 59.482 63.158 0.00 0.00 42.76 5.28
5914 7970 0.972983 AGGTGGATCACTGGAGACGG 60.973 60.000 0.00 0.00 44.60 4.79
5915 7971 0.898320 AAGGTGGATCACTGGAGACG 59.102 55.000 0.00 0.00 34.40 4.18
5916 7972 1.625818 ACAAGGTGGATCACTGGAGAC 59.374 52.381 0.00 0.00 34.40 3.36
5917 7973 1.902508 GACAAGGTGGATCACTGGAGA 59.097 52.381 0.00 0.00 34.40 3.71
5918 7974 1.625315 TGACAAGGTGGATCACTGGAG 59.375 52.381 0.00 0.00 34.40 3.86
5919 7975 1.625315 CTGACAAGGTGGATCACTGGA 59.375 52.381 0.00 0.00 34.40 3.86
5920 7976 1.947678 GCTGACAAGGTGGATCACTGG 60.948 57.143 0.00 0.00 34.40 4.00
5921 7977 1.002888 AGCTGACAAGGTGGATCACTG 59.997 52.381 0.00 0.00 34.40 3.66
5922 7978 1.002888 CAGCTGACAAGGTGGATCACT 59.997 52.381 8.42 0.00 46.16 3.41
5923 7979 1.446907 CAGCTGACAAGGTGGATCAC 58.553 55.000 8.42 0.00 46.16 3.06
5924 7980 3.942351 CAGCTGACAAGGTGGATCA 57.058 52.632 8.42 0.00 46.16 2.92
5935 7991 1.470632 CGAGGATCCAAGTCAGCTGAC 60.471 57.143 34.82 34.82 45.08 3.51
5936 7992 0.820226 CGAGGATCCAAGTCAGCTGA 59.180 55.000 13.74 13.74 0.00 4.26
5937 7993 0.820226 TCGAGGATCCAAGTCAGCTG 59.180 55.000 15.82 7.63 0.00 4.24
5938 7994 1.110442 CTCGAGGATCCAAGTCAGCT 58.890 55.000 15.82 0.00 0.00 4.24
5939 7995 0.103937 CCTCGAGGATCCAAGTCAGC 59.896 60.000 28.21 0.00 37.39 4.26
5940 7996 0.749649 CCCTCGAGGATCCAAGTCAG 59.250 60.000 33.39 7.87 38.24 3.51
5941 7997 0.041238 ACCCTCGAGGATCCAAGTCA 59.959 55.000 33.39 0.00 39.89 3.41
5942 7998 0.461961 CACCCTCGAGGATCCAAGTC 59.538 60.000 33.39 1.51 39.89 3.01
5943 7999 0.041238 TCACCCTCGAGGATCCAAGT 59.959 55.000 33.39 17.61 39.89 3.16
5944 8000 1.137872 CTTCACCCTCGAGGATCCAAG 59.862 57.143 33.39 21.88 39.89 3.61
5945 8001 1.195115 CTTCACCCTCGAGGATCCAA 58.805 55.000 33.39 17.15 39.89 3.53
5946 8002 0.041238 ACTTCACCCTCGAGGATCCA 59.959 55.000 33.39 12.67 39.89 3.41
5947 8003 0.747852 GACTTCACCCTCGAGGATCC 59.252 60.000 33.39 2.48 39.89 3.36
5948 8004 1.770294 AGACTTCACCCTCGAGGATC 58.230 55.000 33.39 17.92 39.89 3.36
5949 8005 3.603965 ATAGACTTCACCCTCGAGGAT 57.396 47.619 33.39 14.63 39.89 3.24
5950 8006 3.383698 AATAGACTTCACCCTCGAGGA 57.616 47.619 33.39 10.52 39.89 3.71
5951 8007 4.473477 AAAATAGACTTCACCCTCGAGG 57.527 45.455 25.36 25.36 43.78 4.63
5952 8008 6.313164 GGTTTAAAATAGACTTCACCCTCGAG 59.687 42.308 5.13 5.13 0.00 4.04
5953 8009 6.168389 GGTTTAAAATAGACTTCACCCTCGA 58.832 40.000 0.00 0.00 0.00 4.04
5954 8010 5.353400 GGGTTTAAAATAGACTTCACCCTCG 59.647 44.000 0.00 0.00 39.75 4.63
5955 8011 6.754702 GGGTTTAAAATAGACTTCACCCTC 57.245 41.667 0.00 0.00 39.75 4.30
5956 8012 6.464530 AGGGTTTAAAATAGACTTCACCCT 57.535 37.500 0.41 0.41 46.85 4.34
5957 8013 6.243148 TCAGGGTTTAAAATAGACTTCACCC 58.757 40.000 0.00 0.00 42.74 4.61
5958 8014 6.374613 CCTCAGGGTTTAAAATAGACTTCACC 59.625 42.308 0.00 0.00 0.00 4.02
5959 8015 6.940867 ACCTCAGGGTTTAAAATAGACTTCAC 59.059 38.462 0.00 0.00 44.73 3.18
5960 8016 7.086685 ACCTCAGGGTTTAAAATAGACTTCA 57.913 36.000 0.00 0.00 44.73 3.02
5976 8032 1.153549 GCGCTCTACAACCTCAGGG 60.154 63.158 0.00 0.00 38.88 4.45
5977 8033 1.517257 CGCGCTCTACAACCTCAGG 60.517 63.158 5.56 0.00 0.00 3.86
5978 8034 0.798771 GTCGCGCTCTACAACCTCAG 60.799 60.000 5.56 0.00 0.00 3.35
5979 8035 1.211969 GTCGCGCTCTACAACCTCA 59.788 57.895 5.56 0.00 0.00 3.86
5980 8036 1.071567 GTGTCGCGCTCTACAACCTC 61.072 60.000 5.56 0.00 0.00 3.85
5981 8037 1.080705 GTGTCGCGCTCTACAACCT 60.081 57.895 5.56 0.00 0.00 3.50
5982 8038 0.942410 TTGTGTCGCGCTCTACAACC 60.942 55.000 5.56 0.00 0.00 3.77
5983 8039 0.856641 TTTGTGTCGCGCTCTACAAC 59.143 50.000 16.28 8.83 33.25 3.32
5984 8040 1.459209 CATTTGTGTCGCGCTCTACAA 59.541 47.619 5.56 10.81 0.00 2.41
5985 8041 1.067693 CATTTGTGTCGCGCTCTACA 58.932 50.000 5.56 4.23 0.00 2.74
5986 8042 1.346365 TCATTTGTGTCGCGCTCTAC 58.654 50.000 5.56 1.15 0.00 2.59
5987 8043 1.724623 GTTCATTTGTGTCGCGCTCTA 59.275 47.619 5.56 0.00 0.00 2.43
5988 8044 0.512952 GTTCATTTGTGTCGCGCTCT 59.487 50.000 5.56 0.00 0.00 4.09
5989 8045 0.452784 GGTTCATTTGTGTCGCGCTC 60.453 55.000 5.56 0.00 0.00 5.03
5990 8046 0.884704 AGGTTCATTTGTGTCGCGCT 60.885 50.000 5.56 0.00 0.00 5.92
5991 8047 1.574428 AGGTTCATTTGTGTCGCGC 59.426 52.632 0.00 0.00 0.00 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.