Multiple sequence alignment - TraesCS5D01G033100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G033100 chr5D 100.000 2486 0 0 1 2486 30811727 30814212 0.000000e+00 4591
1 TraesCS5D01G033100 chr5D 86.819 1798 208 20 467 2244 30770789 30772577 0.000000e+00 1980
2 TraesCS5D01G033100 chr5D 88.444 225 24 1 2249 2473 338524930 338525152 1.130000e-68 270
3 TraesCS5D01G033100 chr5B 93.677 1202 57 3 464 1650 23367240 23368437 0.000000e+00 1781
4 TraesCS5D01G033100 chr5B 92.850 1035 56 5 468 1490 23398087 23399115 0.000000e+00 1485
5 TraesCS5D01G033100 chr5B 92.278 790 58 3 1698 2486 23368433 23369220 0.000000e+00 1118
6 TraesCS5D01G033100 chr5B 91.919 792 61 2 1698 2486 23401893 23402684 0.000000e+00 1105
7 TraesCS5D01G033100 chr5B 94.433 467 24 2 1 466 710360964 710361429 0.000000e+00 717
8 TraesCS5D01G033100 chr5B 93.333 165 10 1 1486 1650 23401734 23401897 2.470000e-60 243
9 TraesCS5D01G033100 chr2D 97.447 470 11 1 1 469 520039690 520040159 0.000000e+00 800
10 TraesCS5D01G033100 chr3B 95.299 468 19 3 1 467 421110211 421110676 0.000000e+00 739
11 TraesCS5D01G033100 chr3B 88.053 226 22 4 2251 2473 325830424 325830201 1.900000e-66 263
12 TraesCS5D01G033100 chr3B 87.500 224 24 3 2252 2473 323329609 323329388 3.170000e-64 255
13 TraesCS5D01G033100 chr3B 85.957 235 31 1 2252 2484 70266465 70266231 1.480000e-62 250
14 TraesCS5D01G033100 chr4B 95.085 468 21 2 1 467 377799287 377798821 0.000000e+00 736
15 TraesCS5D01G033100 chr4B 89.286 224 17 5 2252 2473 611054685 611054467 8.760000e-70 274
16 TraesCS5D01G033100 chr3A 93.542 480 24 6 1 475 692337248 692336771 0.000000e+00 708
17 TraesCS5D01G033100 chr2B 94.017 468 24 4 1 466 406114282 406114747 0.000000e+00 706
18 TraesCS5D01G033100 chr2B 93.631 471 27 3 1 469 718640052 718639583 0.000000e+00 701
19 TraesCS5D01G033100 chr6B 93.803 468 27 2 1 467 652706580 652706114 0.000000e+00 702
20 TraesCS5D01G033100 chr4A 92.798 486 31 4 2 485 743514989 743515472 0.000000e+00 701
21 TraesCS5D01G033100 chr1D 88.158 228 18 6 2250 2473 380593080 380592858 1.900000e-66 263
22 TraesCS5D01G033100 chr1A 85.477 241 29 5 2246 2484 403368860 403369096 1.910000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G033100 chr5D 30811727 30814212 2485 False 4591.000000 4591 100.000000 1 2486 1 chr5D.!!$F2 2485
1 TraesCS5D01G033100 chr5D 30770789 30772577 1788 False 1980.000000 1980 86.819000 467 2244 1 chr5D.!!$F1 1777
2 TraesCS5D01G033100 chr5B 23367240 23369220 1980 False 1449.500000 1781 92.977500 464 2486 2 chr5B.!!$F2 2022
3 TraesCS5D01G033100 chr5B 23398087 23402684 4597 False 944.333333 1485 92.700667 468 2486 3 chr5B.!!$F3 2018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.030504 TTGTGCGTGCATGGAAAGTG 59.969 50.0 8.27 0.0 0.00 3.16 F
393 394 0.101759 ACATGCCAAGATTCATGCGC 59.898 50.0 0.00 0.0 42.72 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1142 0.249489 GCTCACCCGCGATATTGTCT 60.249 55.0 8.23 0.0 0.00 3.41 R
2264 4914 0.442310 CGTGTGCGAATACAGGTTGG 59.558 55.0 0.00 0.0 41.33 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.126467 CAAAAACACATGGCAACTCGG 58.874 47.619 0.00 0.00 37.61 4.63
21 22 1.398692 AAAACACATGGCAACTCGGT 58.601 45.000 0.00 0.00 37.61 4.69
22 23 2.264005 AAACACATGGCAACTCGGTA 57.736 45.000 0.00 0.00 37.61 4.02
23 24 2.264005 AACACATGGCAACTCGGTAA 57.736 45.000 0.00 0.00 37.61 2.85
24 25 2.264005 ACACATGGCAACTCGGTAAA 57.736 45.000 0.00 0.00 37.61 2.01
25 26 2.151202 ACACATGGCAACTCGGTAAAG 58.849 47.619 0.00 0.00 37.61 1.85
26 27 2.224426 ACACATGGCAACTCGGTAAAGA 60.224 45.455 0.00 0.00 37.61 2.52
27 28 2.416547 CACATGGCAACTCGGTAAAGAG 59.583 50.000 0.00 0.00 43.56 2.85
28 29 2.301870 ACATGGCAACTCGGTAAAGAGA 59.698 45.455 0.00 0.00 40.57 3.10
29 30 2.743636 TGGCAACTCGGTAAAGAGAG 57.256 50.000 0.62 0.00 40.57 3.20
30 31 2.244695 TGGCAACTCGGTAAAGAGAGA 58.755 47.619 0.62 0.00 40.57 3.10
31 32 2.231478 TGGCAACTCGGTAAAGAGAGAG 59.769 50.000 0.62 0.00 40.57 3.20
32 33 2.231721 GGCAACTCGGTAAAGAGAGAGT 59.768 50.000 0.62 0.00 44.81 3.24
35 36 3.579335 ACTCGGTAAAGAGAGAGTTGC 57.421 47.619 0.62 0.00 40.64 4.17
36 37 2.231721 ACTCGGTAAAGAGAGAGTTGCC 59.768 50.000 0.62 0.00 40.64 4.52
37 38 2.231478 CTCGGTAAAGAGAGAGTTGCCA 59.769 50.000 0.00 0.00 40.57 4.92
38 39 2.832129 TCGGTAAAGAGAGAGTTGCCAT 59.168 45.455 0.00 0.00 30.54 4.40
39 40 3.119101 TCGGTAAAGAGAGAGTTGCCATC 60.119 47.826 0.00 0.00 30.54 3.51
40 41 3.118956 CGGTAAAGAGAGAGTTGCCATCT 60.119 47.826 0.00 0.00 30.54 2.90
41 42 4.187694 GGTAAAGAGAGAGTTGCCATCTG 58.812 47.826 0.00 0.00 30.54 2.90
42 43 2.399916 AAGAGAGAGTTGCCATCTGC 57.600 50.000 0.00 0.00 41.77 4.26
43 44 1.570803 AGAGAGAGTTGCCATCTGCT 58.429 50.000 0.00 0.00 42.00 4.24
44 45 1.907936 AGAGAGAGTTGCCATCTGCTT 59.092 47.619 0.00 0.00 42.00 3.91
45 46 3.102972 AGAGAGAGTTGCCATCTGCTTA 58.897 45.455 0.00 0.00 42.00 3.09
46 47 3.118811 AGAGAGAGTTGCCATCTGCTTAC 60.119 47.826 0.00 0.00 42.00 2.34
47 48 1.929836 GAGAGTTGCCATCTGCTTACG 59.070 52.381 0.00 0.00 42.00 3.18
48 49 1.276421 AGAGTTGCCATCTGCTTACGT 59.724 47.619 0.00 0.00 42.00 3.57
49 50 1.394917 GAGTTGCCATCTGCTTACGTG 59.605 52.381 0.00 0.00 42.00 4.49
50 51 0.179189 GTTGCCATCTGCTTACGTGC 60.179 55.000 0.00 0.00 42.00 5.34
51 52 0.605050 TTGCCATCTGCTTACGTGCA 60.605 50.000 0.00 0.00 42.00 4.57
52 53 1.298157 TGCCATCTGCTTACGTGCAC 61.298 55.000 6.82 6.82 42.00 4.57
53 54 1.298157 GCCATCTGCTTACGTGCACA 61.298 55.000 18.64 0.00 38.12 4.57
54 55 0.443869 CCATCTGCTTACGTGCACAC 59.556 55.000 18.64 0.70 38.12 3.82
55 56 1.432514 CATCTGCTTACGTGCACACT 58.567 50.000 18.64 3.22 38.12 3.55
56 57 2.606108 CATCTGCTTACGTGCACACTA 58.394 47.619 18.64 2.12 38.12 2.74
57 58 2.347697 TCTGCTTACGTGCACACTAG 57.652 50.000 18.64 10.87 38.12 2.57
58 59 1.067846 TCTGCTTACGTGCACACTAGG 60.068 52.381 18.64 6.95 38.12 3.02
59 60 0.669318 TGCTTACGTGCACACTAGGC 60.669 55.000 18.64 16.53 38.12 3.93
60 61 0.669318 GCTTACGTGCACACTAGGCA 60.669 55.000 18.64 0.00 39.32 4.75
61 62 1.350193 CTTACGTGCACACTAGGCAG 58.650 55.000 18.64 0.00 42.85 4.85
62 63 0.677288 TTACGTGCACACTAGGCAGT 59.323 50.000 18.64 6.32 42.85 4.40
63 64 0.677288 TACGTGCACACTAGGCAGTT 59.323 50.000 18.64 0.00 42.85 3.16
64 65 0.880278 ACGTGCACACTAGGCAGTTG 60.880 55.000 18.64 0.00 42.85 3.16
65 66 1.576421 GTGCACACTAGGCAGTTGC 59.424 57.895 13.17 0.00 42.85 4.17
75 76 2.032071 GCAGTTGCCGTGTACCCT 59.968 61.111 0.00 0.00 34.31 4.34
76 77 2.325082 GCAGTTGCCGTGTACCCTG 61.325 63.158 0.00 0.00 34.31 4.45
77 78 1.070786 CAGTTGCCGTGTACCCTGT 59.929 57.895 0.00 0.00 0.00 4.00
78 79 0.319083 CAGTTGCCGTGTACCCTGTA 59.681 55.000 0.00 0.00 0.00 2.74
79 80 1.050204 AGTTGCCGTGTACCCTGTAA 58.950 50.000 0.00 0.00 0.00 2.41
80 81 1.417145 AGTTGCCGTGTACCCTGTAAA 59.583 47.619 0.00 0.00 0.00 2.01
81 82 2.158784 AGTTGCCGTGTACCCTGTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
82 83 2.617774 GTTGCCGTGTACCCTGTAAAAA 59.382 45.455 0.00 0.00 0.00 1.94
83 84 2.220313 TGCCGTGTACCCTGTAAAAAC 58.780 47.619 0.00 0.00 0.00 2.43
84 85 2.220313 GCCGTGTACCCTGTAAAAACA 58.780 47.619 0.00 0.00 0.00 2.83
85 86 2.031769 GCCGTGTACCCTGTAAAAACAC 60.032 50.000 0.00 0.00 37.64 3.32
86 87 3.204526 CCGTGTACCCTGTAAAAACACA 58.795 45.455 4.95 0.00 40.29 3.72
87 88 3.816523 CCGTGTACCCTGTAAAAACACAT 59.183 43.478 4.95 0.00 40.29 3.21
88 89 4.319911 CCGTGTACCCTGTAAAAACACATG 60.320 45.833 4.95 0.00 40.29 3.21
89 90 4.319911 CGTGTACCCTGTAAAAACACATGG 60.320 45.833 0.00 0.00 40.29 3.66
90 91 3.570550 TGTACCCTGTAAAAACACATGGC 59.429 43.478 0.00 0.00 37.63 4.40
91 92 2.672098 ACCCTGTAAAAACACATGGCA 58.328 42.857 0.00 0.00 37.63 4.92
92 93 3.034635 ACCCTGTAAAAACACATGGCAA 58.965 40.909 0.00 0.00 37.63 4.52
93 94 3.181470 ACCCTGTAAAAACACATGGCAAC 60.181 43.478 0.00 0.00 37.63 4.17
94 95 3.069443 CCCTGTAAAAACACATGGCAACT 59.931 43.478 0.00 0.00 29.16 3.16
95 96 4.298332 CCTGTAAAAACACATGGCAACTC 58.702 43.478 0.00 0.00 37.61 3.01
96 97 4.037923 CCTGTAAAAACACATGGCAACTCT 59.962 41.667 0.00 0.00 37.61 3.24
97 98 4.930963 TGTAAAAACACATGGCAACTCTG 58.069 39.130 0.00 0.00 37.61 3.35
98 99 3.457610 AAAAACACATGGCAACTCTGG 57.542 42.857 0.00 0.00 37.61 3.86
99 100 2.071778 AAACACATGGCAACTCTGGT 57.928 45.000 0.00 0.00 37.61 4.00
100 101 2.949177 AACACATGGCAACTCTGGTA 57.051 45.000 0.00 0.00 37.61 3.25
101 102 2.949177 ACACATGGCAACTCTGGTAA 57.051 45.000 0.00 0.00 37.61 2.85
102 103 3.222173 ACACATGGCAACTCTGGTAAA 57.778 42.857 0.00 0.00 37.61 2.01
103 104 3.561143 ACACATGGCAACTCTGGTAAAA 58.439 40.909 0.00 0.00 37.61 1.52
104 105 3.957497 ACACATGGCAACTCTGGTAAAAA 59.043 39.130 0.00 0.00 37.61 1.94
128 129 6.510879 AAAGTTGCCACCTACTTATAAAGC 57.489 37.500 0.00 0.00 36.29 3.51
129 130 5.174037 AGTTGCCACCTACTTATAAAGCA 57.826 39.130 0.00 0.00 0.00 3.91
130 131 4.941873 AGTTGCCACCTACTTATAAAGCAC 59.058 41.667 0.00 0.00 0.00 4.40
131 132 4.561500 TGCCACCTACTTATAAAGCACA 57.438 40.909 0.00 0.00 0.00 4.57
132 133 4.258543 TGCCACCTACTTATAAAGCACAC 58.741 43.478 0.00 0.00 0.00 3.82
133 134 4.019681 TGCCACCTACTTATAAAGCACACT 60.020 41.667 0.00 0.00 0.00 3.55
134 135 5.188163 TGCCACCTACTTATAAAGCACACTA 59.812 40.000 0.00 0.00 0.00 2.74
135 136 5.753921 GCCACCTACTTATAAAGCACACTAG 59.246 44.000 0.00 0.00 0.00 2.57
136 137 6.281405 CCACCTACTTATAAAGCACACTAGG 58.719 44.000 0.00 0.00 31.80 3.02
137 138 6.281405 CACCTACTTATAAAGCACACTAGGG 58.719 44.000 0.00 0.00 30.49 3.53
138 139 5.163332 ACCTACTTATAAAGCACACTAGGGC 60.163 44.000 0.00 0.00 30.49 5.19
139 140 4.837093 ACTTATAAAGCACACTAGGGCA 57.163 40.909 0.00 0.00 0.00 5.36
140 141 5.174037 ACTTATAAAGCACACTAGGGCAA 57.826 39.130 0.00 0.00 0.00 4.52
141 142 5.755849 ACTTATAAAGCACACTAGGGCAAT 58.244 37.500 0.00 0.00 0.00 3.56
142 143 6.187682 ACTTATAAAGCACACTAGGGCAATT 58.812 36.000 0.00 0.00 0.00 2.32
143 144 4.989279 ATAAAGCACACTAGGGCAATTG 57.011 40.909 0.00 0.00 0.00 2.32
144 145 0.890683 AAGCACACTAGGGCAATTGC 59.109 50.000 22.47 22.47 41.14 3.56
154 155 2.125832 GCAATTGCCATGTGCGCT 60.126 55.556 20.06 0.00 45.60 5.92
155 156 2.449525 GCAATTGCCATGTGCGCTG 61.450 57.895 20.06 0.00 45.60 5.18
156 157 2.125832 AATTGCCATGTGCGCTGC 60.126 55.556 9.73 1.68 45.60 5.25
157 158 2.933401 AATTGCCATGTGCGCTGCA 61.933 52.632 9.73 8.47 45.60 4.41
158 159 2.437518 AATTGCCATGTGCGCTGCAA 62.438 50.000 19.36 19.36 46.51 4.08
159 160 2.437518 ATTGCCATGTGCGCTGCAAA 62.438 50.000 20.40 0.41 45.71 3.68
160 161 2.356075 GCCATGTGCGCTGCAAAA 60.356 55.556 9.73 0.00 41.47 2.44
161 162 2.660612 GCCATGTGCGCTGCAAAAC 61.661 57.895 9.73 0.00 41.47 2.43
162 163 1.300003 CCATGTGCGCTGCAAAACA 60.300 52.632 9.73 3.19 41.47 2.83
163 164 0.668096 CCATGTGCGCTGCAAAACAT 60.668 50.000 9.73 5.90 41.47 2.71
164 165 1.402588 CCATGTGCGCTGCAAAACATA 60.403 47.619 9.73 0.00 41.47 2.29
165 166 2.532235 CATGTGCGCTGCAAAACATAT 58.468 42.857 9.73 0.07 41.47 1.78
166 167 1.979897 TGTGCGCTGCAAAACATATG 58.020 45.000 9.73 0.00 41.47 1.78
167 168 1.270971 GTGCGCTGCAAAACATATGG 58.729 50.000 9.73 0.00 41.47 2.74
168 169 0.458197 TGCGCTGCAAAACATATGGC 60.458 50.000 9.73 1.08 34.76 4.40
169 170 0.458197 GCGCTGCAAAACATATGGCA 60.458 50.000 7.80 5.96 34.66 4.92
170 171 1.993542 CGCTGCAAAACATATGGCAA 58.006 45.000 7.80 0.00 35.59 4.52
171 172 1.655099 CGCTGCAAAACATATGGCAAC 59.345 47.619 7.80 1.67 35.59 4.17
172 173 2.671914 CGCTGCAAAACATATGGCAACT 60.672 45.455 7.80 0.00 35.59 3.16
173 174 3.427368 CGCTGCAAAACATATGGCAACTA 60.427 43.478 7.80 0.00 35.59 2.24
174 175 4.107622 GCTGCAAAACATATGGCAACTAG 58.892 43.478 7.80 0.31 35.59 2.57
175 176 4.107622 CTGCAAAACATATGGCAACTAGC 58.892 43.478 7.80 2.65 44.65 3.42
184 185 4.404691 GCAACTAGCAGCTTGGGT 57.595 55.556 0.00 0.00 44.79 4.51
185 186 1.878775 GCAACTAGCAGCTTGGGTG 59.121 57.895 0.00 4.37 44.79 4.61
186 187 0.890996 GCAACTAGCAGCTTGGGTGT 60.891 55.000 0.00 0.00 44.79 4.16
187 188 0.877071 CAACTAGCAGCTTGGGTGTG 59.123 55.000 0.00 0.00 33.19 3.82
188 189 0.764890 AACTAGCAGCTTGGGTGTGA 59.235 50.000 0.00 0.00 33.19 3.58
189 190 0.322975 ACTAGCAGCTTGGGTGTGAG 59.677 55.000 0.00 0.00 33.19 3.51
190 191 0.610174 CTAGCAGCTTGGGTGTGAGA 59.390 55.000 0.00 0.00 33.19 3.27
191 192 0.610174 TAGCAGCTTGGGTGTGAGAG 59.390 55.000 0.00 0.00 33.19 3.20
192 193 1.123861 AGCAGCTTGGGTGTGAGAGA 61.124 55.000 0.00 0.00 33.19 3.10
193 194 0.673022 GCAGCTTGGGTGTGAGAGAG 60.673 60.000 0.00 0.00 33.19 3.20
194 195 0.036577 CAGCTTGGGTGTGAGAGAGG 60.037 60.000 0.00 0.00 0.00 3.69
195 196 0.178921 AGCTTGGGTGTGAGAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
196 197 0.248843 GCTTGGGTGTGAGAGAGGAG 59.751 60.000 0.00 0.00 0.00 3.69
197 198 1.930251 CTTGGGTGTGAGAGAGGAGA 58.070 55.000 0.00 0.00 0.00 3.71
198 199 1.548269 CTTGGGTGTGAGAGAGGAGAC 59.452 57.143 0.00 0.00 0.00 3.36
199 200 0.609406 TGGGTGTGAGAGAGGAGACG 60.609 60.000 0.00 0.00 0.00 4.18
200 201 1.316706 GGGTGTGAGAGAGGAGACGG 61.317 65.000 0.00 0.00 0.00 4.79
201 202 1.316706 GGTGTGAGAGAGGAGACGGG 61.317 65.000 0.00 0.00 0.00 5.28
202 203 1.679305 TGTGAGAGAGGAGACGGGC 60.679 63.158 0.00 0.00 0.00 6.13
203 204 2.438614 TGAGAGAGGAGACGGGCG 60.439 66.667 0.00 0.00 0.00 6.13
204 205 2.438795 GAGAGAGGAGACGGGCGT 60.439 66.667 0.00 0.00 0.00 5.68
205 206 2.752238 AGAGAGGAGACGGGCGTG 60.752 66.667 0.00 0.00 0.00 5.34
206 207 3.063084 GAGAGGAGACGGGCGTGT 61.063 66.667 0.00 0.00 0.00 4.49
207 208 3.343788 GAGAGGAGACGGGCGTGTG 62.344 68.421 0.00 0.00 0.00 3.82
208 209 4.436998 GAGGAGACGGGCGTGTGG 62.437 72.222 0.00 0.00 0.00 4.17
236 237 0.109132 GCAAATGCCCACACACTAGC 60.109 55.000 0.00 0.00 34.31 3.42
237 238 0.527565 CAAATGCCCACACACTAGCC 59.472 55.000 0.00 0.00 0.00 3.93
238 239 0.611896 AAATGCCCACACACTAGCCC 60.612 55.000 0.00 0.00 0.00 5.19
239 240 1.500783 AATGCCCACACACTAGCCCT 61.501 55.000 0.00 0.00 0.00 5.19
240 241 1.500783 ATGCCCACACACTAGCCCTT 61.501 55.000 0.00 0.00 0.00 3.95
241 242 1.675641 GCCCACACACTAGCCCTTG 60.676 63.158 0.00 0.00 0.00 3.61
242 243 1.761174 CCCACACACTAGCCCTTGT 59.239 57.895 0.00 0.00 0.00 3.16
244 245 1.237285 CCACACACTAGCCCTTGTGC 61.237 60.000 10.29 0.00 45.92 4.57
245 246 1.301716 ACACACTAGCCCTTGTGCG 60.302 57.895 10.29 3.65 45.92 5.34
246 247 1.301716 CACACTAGCCCTTGTGCGT 60.302 57.895 9.27 0.00 39.36 5.24
247 248 1.301716 ACACTAGCCCTTGTGCGTG 60.302 57.895 9.27 0.00 39.36 5.34
248 249 2.358737 ACTAGCCCTTGTGCGTGC 60.359 61.111 0.00 0.00 36.02 5.34
249 250 2.358615 CTAGCCCTTGTGCGTGCA 60.359 61.111 0.00 0.00 36.02 4.57
250 251 1.746615 CTAGCCCTTGTGCGTGCAT 60.747 57.895 0.00 0.00 36.02 3.96
251 252 1.985447 CTAGCCCTTGTGCGTGCATG 61.985 60.000 0.09 0.09 36.02 4.06
252 253 4.424566 GCCCTTGTGCGTGCATGG 62.425 66.667 8.27 1.37 34.55 3.66
253 254 2.672651 CCCTTGTGCGTGCATGGA 60.673 61.111 8.27 0.81 36.21 3.41
254 255 2.267351 CCCTTGTGCGTGCATGGAA 61.267 57.895 8.27 0.00 36.21 3.53
255 256 1.659233 CCTTGTGCGTGCATGGAAA 59.341 52.632 8.27 0.00 36.21 3.13
256 257 0.387622 CCTTGTGCGTGCATGGAAAG 60.388 55.000 8.27 10.82 36.21 2.62
257 258 0.311790 CTTGTGCGTGCATGGAAAGT 59.688 50.000 8.27 0.00 0.00 2.66
258 259 0.030504 TTGTGCGTGCATGGAAAGTG 59.969 50.000 8.27 0.00 0.00 3.16
259 260 1.081242 GTGCGTGCATGGAAAGTGG 60.081 57.895 8.27 0.00 0.00 4.00
260 261 2.126346 GCGTGCATGGAAAGTGGC 60.126 61.111 8.27 0.00 0.00 5.01
261 262 2.176546 CGTGCATGGAAAGTGGCG 59.823 61.111 0.00 0.00 0.00 5.69
262 263 2.616330 CGTGCATGGAAAGTGGCGT 61.616 57.895 0.00 0.00 0.00 5.68
263 264 1.081242 GTGCATGGAAAGTGGCGTG 60.081 57.895 0.00 0.00 0.00 5.34
264 265 1.528076 TGCATGGAAAGTGGCGTGT 60.528 52.632 0.00 0.00 0.00 4.49
265 266 1.081242 GCATGGAAAGTGGCGTGTG 60.081 57.895 0.00 0.00 0.00 3.82
266 267 1.580942 CATGGAAAGTGGCGTGTGG 59.419 57.895 0.00 0.00 0.00 4.17
267 268 1.603455 ATGGAAAGTGGCGTGTGGG 60.603 57.895 0.00 0.00 0.00 4.61
268 269 3.670377 GGAAAGTGGCGTGTGGGC 61.670 66.667 0.00 0.00 42.69 5.36
269 270 4.025401 GAAAGTGGCGTGTGGGCG 62.025 66.667 0.00 0.00 46.04 6.13
270 271 4.555709 AAAGTGGCGTGTGGGCGA 62.556 61.111 0.00 0.00 46.04 5.54
271 272 4.555709 AAGTGGCGTGTGGGCGAA 62.556 61.111 0.00 0.00 46.04 4.70
277 278 3.716006 CGTGTGGGCGAACTGCTG 61.716 66.667 0.00 0.00 45.43 4.41
278 279 2.280797 GTGTGGGCGAACTGCTGA 60.281 61.111 0.00 0.00 45.43 4.26
279 280 1.891919 GTGTGGGCGAACTGCTGAA 60.892 57.895 0.00 0.00 45.43 3.02
280 281 1.891919 TGTGGGCGAACTGCTGAAC 60.892 57.895 0.00 0.00 45.43 3.18
281 282 2.664851 TGGGCGAACTGCTGAACG 60.665 61.111 0.00 3.89 45.43 3.95
284 285 4.090057 GCGAACTGCTGAACGCCC 62.090 66.667 20.32 3.43 44.27 6.13
285 286 2.664851 CGAACTGCTGAACGCCCA 60.665 61.111 0.00 0.00 38.05 5.36
286 287 2.946762 GAACTGCTGAACGCCCAC 59.053 61.111 0.00 0.00 38.05 4.61
287 288 1.891919 GAACTGCTGAACGCCCACA 60.892 57.895 0.00 0.00 38.05 4.17
288 289 2.117941 GAACTGCTGAACGCCCACAC 62.118 60.000 0.00 0.00 38.05 3.82
289 290 2.591429 CTGCTGAACGCCCACACA 60.591 61.111 0.00 0.00 38.05 3.72
290 291 2.896801 CTGCTGAACGCCCACACAC 61.897 63.158 0.00 0.00 38.05 3.82
291 292 3.660111 GCTGAACGCCCACACACC 61.660 66.667 0.00 0.00 0.00 4.16
292 293 2.203139 CTGAACGCCCACACACCA 60.203 61.111 0.00 0.00 0.00 4.17
293 294 2.203139 TGAACGCCCACACACCAG 60.203 61.111 0.00 0.00 0.00 4.00
294 295 3.660111 GAACGCCCACACACCAGC 61.660 66.667 0.00 0.00 0.00 4.85
299 300 4.351054 CCCACACACCAGCCCCTC 62.351 72.222 0.00 0.00 0.00 4.30
300 301 4.351054 CCACACACCAGCCCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
301 302 4.351054 CACACACCAGCCCCTCCC 62.351 72.222 0.00 0.00 0.00 4.30
311 312 3.246112 CCCCTCCCGTGTGGTGAA 61.246 66.667 0.00 0.00 34.77 3.18
312 313 2.824880 CCCCTCCCGTGTGGTGAAA 61.825 63.158 0.00 0.00 34.77 2.69
313 314 1.599797 CCCTCCCGTGTGGTGAAAC 60.600 63.158 0.00 0.00 34.77 2.78
314 315 1.959226 CCTCCCGTGTGGTGAAACG 60.959 63.158 0.00 0.00 38.12 3.60
318 319 4.007940 CGTGTGGTGAAACGGCCG 62.008 66.667 26.86 26.86 38.12 6.13
319 320 2.898343 GTGTGGTGAAACGGCCGT 60.898 61.111 28.70 28.70 38.12 5.68
320 321 2.897846 TGTGGTGAAACGGCCGTG 60.898 61.111 34.95 3.06 38.12 4.94
321 322 2.898343 GTGGTGAAACGGCCGTGT 60.898 61.111 34.95 29.73 38.12 4.49
322 323 2.897846 TGGTGAAACGGCCGTGTG 60.898 61.111 34.95 1.63 38.12 3.82
323 324 3.656045 GGTGAAACGGCCGTGTGG 61.656 66.667 34.95 1.14 38.12 4.17
324 325 3.656045 GTGAAACGGCCGTGTGGG 61.656 66.667 34.95 0.21 39.58 4.61
341 342 3.861263 GCGACCGAATGAACGCCC 61.861 66.667 0.00 0.00 44.27 6.13
342 343 2.433491 CGACCGAATGAACGCCCA 60.433 61.111 0.00 0.00 0.00 5.36
343 344 2.736682 CGACCGAATGAACGCCCAC 61.737 63.158 0.00 0.00 0.00 4.61
344 345 1.669760 GACCGAATGAACGCCCACA 60.670 57.895 0.00 0.00 0.00 4.17
345 346 1.908066 GACCGAATGAACGCCCACAC 61.908 60.000 0.00 0.00 0.00 3.82
346 347 1.963855 CCGAATGAACGCCCACACA 60.964 57.895 0.00 0.00 0.00 3.72
347 348 1.206578 CGAATGAACGCCCACACAC 59.793 57.895 0.00 0.00 0.00 3.82
348 349 1.579429 GAATGAACGCCCACACACC 59.421 57.895 0.00 0.00 0.00 4.16
349 350 1.152860 AATGAACGCCCACACACCA 60.153 52.632 0.00 0.00 0.00 4.17
350 351 1.172180 AATGAACGCCCACACACCAG 61.172 55.000 0.00 0.00 0.00 4.00
351 352 2.978010 GAACGCCCACACACCAGG 60.978 66.667 0.00 0.00 0.00 4.45
356 357 3.889692 CCCACACACCAGGCCAGT 61.890 66.667 5.01 0.00 0.00 4.00
357 358 2.281761 CCACACACCAGGCCAGTC 60.282 66.667 5.01 0.00 0.00 3.51
358 359 2.281761 CACACACCAGGCCAGTCC 60.282 66.667 5.01 0.00 0.00 3.85
360 361 1.152118 ACACACCAGGCCAGTCCTA 60.152 57.895 5.01 0.00 45.52 2.94
361 362 1.296715 CACACCAGGCCAGTCCTAC 59.703 63.158 5.01 0.00 45.52 3.18
362 363 2.283529 ACACCAGGCCAGTCCTACG 61.284 63.158 5.01 0.00 45.52 3.51
363 364 2.119832 ACCAGGCCAGTCCTACGT 59.880 61.111 5.01 0.00 45.52 3.57
364 365 2.283529 ACCAGGCCAGTCCTACGTG 61.284 63.158 5.01 0.00 45.52 4.49
365 366 2.579201 CAGGCCAGTCCTACGTGG 59.421 66.667 5.01 0.00 45.52 4.94
369 370 3.377656 CCAGTCCTACGTGGCACT 58.622 61.111 16.72 0.00 35.26 4.40
370 371 2.575108 CCAGTCCTACGTGGCACTA 58.425 57.895 16.72 6.37 35.26 2.74
371 372 0.456221 CCAGTCCTACGTGGCACTAG 59.544 60.000 16.72 14.90 35.26 2.57
372 373 1.460504 CAGTCCTACGTGGCACTAGA 58.539 55.000 16.72 3.95 35.26 2.43
373 374 1.816835 CAGTCCTACGTGGCACTAGAA 59.183 52.381 16.72 0.00 35.26 2.10
374 375 2.230508 CAGTCCTACGTGGCACTAGAAA 59.769 50.000 16.72 5.78 35.26 2.52
375 376 2.230750 AGTCCTACGTGGCACTAGAAAC 59.769 50.000 16.72 15.11 35.26 2.78
376 377 2.029649 GTCCTACGTGGCACTAGAAACA 60.030 50.000 16.72 0.00 35.26 2.83
377 378 2.829720 TCCTACGTGGCACTAGAAACAT 59.170 45.455 16.72 0.00 35.26 2.71
378 379 2.930040 CCTACGTGGCACTAGAAACATG 59.070 50.000 16.72 0.00 0.00 3.21
379 380 1.156736 ACGTGGCACTAGAAACATGC 58.843 50.000 16.72 0.00 38.68 4.06
386 387 4.708726 GCACTAGAAACATGCCAAGATT 57.291 40.909 0.00 0.00 33.06 2.40
387 388 4.666237 GCACTAGAAACATGCCAAGATTC 58.334 43.478 0.00 0.00 33.06 2.52
388 389 4.156556 GCACTAGAAACATGCCAAGATTCA 59.843 41.667 0.00 0.00 33.06 2.57
389 390 5.163581 GCACTAGAAACATGCCAAGATTCAT 60.164 40.000 0.00 0.00 33.06 2.57
390 391 6.263344 CACTAGAAACATGCCAAGATTCATG 58.737 40.000 0.00 0.00 44.08 3.07
391 392 4.119442 AGAAACATGCCAAGATTCATGC 57.881 40.909 0.00 0.00 42.72 4.06
392 393 2.572191 AACATGCCAAGATTCATGCG 57.428 45.000 0.00 0.00 42.72 4.73
393 394 0.101759 ACATGCCAAGATTCATGCGC 59.898 50.000 0.00 0.00 42.72 6.09
394 395 0.384309 CATGCCAAGATTCATGCGCT 59.616 50.000 9.73 0.00 34.44 5.92
395 396 0.666913 ATGCCAAGATTCATGCGCTC 59.333 50.000 9.73 0.00 0.00 5.03
396 397 1.010350 GCCAAGATTCATGCGCTCG 60.010 57.895 9.73 0.00 0.00 5.03
397 398 1.010350 CCAAGATTCATGCGCTCGC 60.010 57.895 9.73 7.38 42.35 5.03
398 399 1.367312 CAAGATTCATGCGCTCGCG 60.367 57.895 9.73 6.98 45.51 5.87
399 400 1.519234 AAGATTCATGCGCTCGCGA 60.519 52.632 16.26 9.26 45.51 5.87
400 401 1.083806 AAGATTCATGCGCTCGCGAA 61.084 50.000 16.26 4.60 45.51 4.70
401 402 1.366961 GATTCATGCGCTCGCGAAC 60.367 57.895 16.26 4.40 45.51 3.95
402 403 2.024226 GATTCATGCGCTCGCGAACA 62.024 55.000 16.26 9.57 45.51 3.18
403 404 2.028766 ATTCATGCGCTCGCGAACAG 62.029 55.000 16.26 5.46 45.51 3.16
404 405 3.181290 CATGCGCTCGCGAACAGA 61.181 61.111 16.26 0.00 45.51 3.41
405 406 3.181967 ATGCGCTCGCGAACAGAC 61.182 61.111 16.26 0.00 45.51 3.51
414 415 4.162640 CGAACAGACGCGAATCCA 57.837 55.556 15.93 0.00 0.00 3.41
415 416 1.702299 CGAACAGACGCGAATCCAC 59.298 57.895 15.93 0.00 0.00 4.02
416 417 1.702299 GAACAGACGCGAATCCACG 59.298 57.895 15.93 0.00 0.00 4.94
433 434 2.183300 GCGTGTGGGCGAGATGTA 59.817 61.111 0.00 0.00 0.00 2.29
434 435 1.447140 GCGTGTGGGCGAGATGTAA 60.447 57.895 0.00 0.00 0.00 2.41
435 436 1.017177 GCGTGTGGGCGAGATGTAAA 61.017 55.000 0.00 0.00 0.00 2.01
436 437 0.719465 CGTGTGGGCGAGATGTAAAC 59.281 55.000 0.00 0.00 0.00 2.01
437 438 0.719465 GTGTGGGCGAGATGTAAACG 59.281 55.000 0.00 0.00 0.00 3.60
441 442 4.195308 GCGAGATGTAAACGCCCA 57.805 55.556 0.00 0.00 45.35 5.36
442 443 1.713830 GCGAGATGTAAACGCCCAC 59.286 57.895 0.00 0.00 45.35 4.61
443 444 1.017177 GCGAGATGTAAACGCCCACA 61.017 55.000 0.00 0.00 45.35 4.17
444 445 0.719465 CGAGATGTAAACGCCCACAC 59.281 55.000 0.00 0.00 0.00 3.82
445 446 0.719465 GAGATGTAAACGCCCACACG 59.281 55.000 0.00 0.00 39.50 4.49
457 458 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
458 459 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
459 460 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
460 461 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
461 462 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
462 463 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
463 464 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
464 465 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
465 466 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
514 515 5.012046 CACCCCTACATATCTAAGATGCACA 59.988 44.000 0.00 0.00 0.00 4.57
529 530 0.968405 GCACACATCCAACCCAACAT 59.032 50.000 0.00 0.00 0.00 2.71
534 535 4.016444 ACACATCCAACCCAACATATGTC 58.984 43.478 9.23 0.00 0.00 3.06
545 546 4.644234 CCCAACATATGTCTGGCACAATAA 59.356 41.667 21.95 0.00 38.97 1.40
552 553 2.811431 TGTCTGGCACAATAAAAGACGG 59.189 45.455 0.00 0.00 40.10 4.79
788 810 1.826054 CGCAAACTGGTTGGGTCCA 60.826 57.895 13.73 0.00 43.42 4.02
823 846 2.437359 GCATGCACGAGGGCTCTT 60.437 61.111 14.21 0.00 34.04 2.85
890 913 1.746220 CTCCGTCGTCATCTTCTCCTT 59.254 52.381 0.00 0.00 0.00 3.36
902 925 5.877012 TCATCTTCTCCTTCCTCATTTTTCG 59.123 40.000 0.00 0.00 0.00 3.46
947 970 0.182775 GGTTGTCTCAACACCCAGGT 59.817 55.000 13.34 0.00 37.86 4.00
1107 1130 3.164269 ATCCGCCGCCTCAAGGAT 61.164 61.111 0.00 0.00 38.56 3.24
1119 1142 3.071602 GCCTCAAGGATGATACCAAGCTA 59.928 47.826 0.00 0.00 37.39 3.32
1120 1143 4.802248 GCCTCAAGGATGATACCAAGCTAG 60.802 50.000 0.00 0.00 37.39 3.42
1129 1152 6.754209 GGATGATACCAAGCTAGACAATATCG 59.246 42.308 0.00 0.00 0.00 2.92
1131 1154 2.743938 ACCAAGCTAGACAATATCGCG 58.256 47.619 0.00 0.00 0.00 5.87
1339 1365 1.865970 CGATCAAGAAGGAGATGCAGC 59.134 52.381 0.00 0.00 0.00 5.25
1377 1403 1.173444 CGGATCTCTTCCCGGACGAT 61.173 60.000 0.73 0.00 42.06 3.73
1387 1413 1.038130 CCCGGACGATGAGGAGTTCT 61.038 60.000 0.73 0.00 0.00 3.01
1410 1436 1.062886 AGCTGGCTAGAGGGTATGACA 60.063 52.381 0.00 0.00 0.00 3.58
1647 4296 3.981071 TGGGGACTCACTACAATCTTG 57.019 47.619 0.00 0.00 0.00 3.02
1656 4305 5.755375 ACTCACTACAATCTTGTGACAACTG 59.245 40.000 5.84 0.00 42.31 3.16
1670 4319 3.568007 TGACAACTGTTTTGGTAGGCATC 59.432 43.478 0.00 0.00 0.00 3.91
1673 4322 2.795329 ACTGTTTTGGTAGGCATCCAG 58.205 47.619 1.38 0.00 36.28 3.86
1688 4337 5.126061 AGGCATCCAGTGTTTGATAAATGAC 59.874 40.000 0.00 0.00 0.00 3.06
1690 4339 6.389091 GCATCCAGTGTTTGATAAATGACAA 58.611 36.000 0.00 0.00 0.00 3.18
1712 4361 1.668751 GTTCTTTGTGTTGGCGTGAGA 59.331 47.619 0.00 0.00 0.00 3.27
1718 4367 1.872952 TGTGTTGGCGTGAGAAAGATG 59.127 47.619 0.00 0.00 0.00 2.90
1738 4387 8.887036 AAGATGCGATTACTCACATACATTTA 57.113 30.769 0.00 0.00 0.00 1.40
1869 4518 5.288712 CCATACGTGGCTCGATTATATTGAC 59.711 44.000 16.57 0.00 42.86 3.18
1906 4555 1.135527 CCTCGCAACATACCTACCGAA 59.864 52.381 0.00 0.00 0.00 4.30
2001 4650 4.974645 TCACACTCTAAACACCTCCAAT 57.025 40.909 0.00 0.00 0.00 3.16
2007 4656 5.882557 CACTCTAAACACCTCCAATAATGCT 59.117 40.000 0.00 0.00 0.00 3.79
2083 4732 5.580691 GCAATGTTAACCTTTTTAGGGCATC 59.419 40.000 2.48 0.00 0.00 3.91
2100 4749 6.494059 AGGGCATCCTAGTTCAATAGTTTTT 58.506 36.000 0.00 0.00 42.75 1.94
2240 4889 9.801873 TTTTCAGTTGAAGTTGAATTAAAGGAG 57.198 29.630 0.00 0.00 35.21 3.69
2246 4895 9.750125 GTTGAAGTTGAATTAAAGGAGAACATT 57.250 29.630 0.00 0.00 0.00 2.71
2285 4935 0.034337 AACCTGTATTCGCACACGGT 59.966 50.000 0.00 0.00 40.63 4.83
2305 4957 5.068636 CGGTGATAGGCCGGTATATATACT 58.931 45.833 19.78 5.12 44.98 2.12
2327 4979 6.113411 ACTTGTACAGGTGTAGGAAATATGC 58.887 40.000 10.20 0.00 0.00 3.14
2335 4987 5.652452 AGGTGTAGGAAATATGCAGAAAACC 59.348 40.000 0.00 0.00 0.00 3.27
2454 5107 3.646534 TGGAGAGATAGAAGCCATGTCA 58.353 45.455 0.00 0.00 0.00 3.58
2466 5119 1.134965 GCCATGTCACGCTCTAGTCTT 60.135 52.381 0.00 0.00 0.00 3.01
2479 5132 4.376146 CTCTAGTCTTGGCCTTGATAAGC 58.624 47.826 3.32 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.754226 ACCGAGTTGCCATGTGTTTTT 59.246 42.857 0.00 0.00 0.00 1.94
2 3 1.398692 ACCGAGTTGCCATGTGTTTT 58.601 45.000 0.00 0.00 0.00 2.43
3 4 2.264005 TACCGAGTTGCCATGTGTTT 57.736 45.000 0.00 0.00 0.00 2.83
4 5 2.264005 TTACCGAGTTGCCATGTGTT 57.736 45.000 0.00 0.00 0.00 3.32
5 6 2.151202 CTTTACCGAGTTGCCATGTGT 58.849 47.619 0.00 0.00 0.00 3.72
6 7 2.416547 CTCTTTACCGAGTTGCCATGTG 59.583 50.000 0.00 0.00 0.00 3.21
7 8 2.301870 TCTCTTTACCGAGTTGCCATGT 59.698 45.455 0.00 0.00 32.83 3.21
8 9 2.932614 CTCTCTTTACCGAGTTGCCATG 59.067 50.000 0.00 0.00 32.83 3.66
9 10 2.832129 TCTCTCTTTACCGAGTTGCCAT 59.168 45.455 0.00 0.00 32.83 4.40
10 11 2.231478 CTCTCTCTTTACCGAGTTGCCA 59.769 50.000 0.00 0.00 32.83 4.92
11 12 2.231721 ACTCTCTCTTTACCGAGTTGCC 59.768 50.000 0.00 0.00 33.21 4.52
12 13 3.579335 ACTCTCTCTTTACCGAGTTGC 57.421 47.619 0.00 0.00 33.21 4.17
14 15 3.306156 GGCAACTCTCTCTTTACCGAGTT 60.306 47.826 0.00 0.00 44.86 3.01
15 16 2.231721 GGCAACTCTCTCTTTACCGAGT 59.768 50.000 0.00 0.00 38.29 4.18
16 17 2.231478 TGGCAACTCTCTCTTTACCGAG 59.769 50.000 0.00 0.00 37.61 4.63
17 18 2.244695 TGGCAACTCTCTCTTTACCGA 58.755 47.619 0.00 0.00 37.61 4.69
18 19 2.743636 TGGCAACTCTCTCTTTACCG 57.256 50.000 0.00 0.00 37.61 4.02
19 20 4.187694 CAGATGGCAACTCTCTCTTTACC 58.812 47.826 0.00 0.00 37.61 2.85
20 21 3.620821 GCAGATGGCAACTCTCTCTTTAC 59.379 47.826 0.00 0.00 43.97 2.01
21 22 3.866651 GCAGATGGCAACTCTCTCTTTA 58.133 45.455 0.00 0.00 43.97 1.85
22 23 2.709213 GCAGATGGCAACTCTCTCTTT 58.291 47.619 0.00 0.00 43.97 2.52
23 24 2.399916 GCAGATGGCAACTCTCTCTT 57.600 50.000 0.00 0.00 43.97 2.85
31 32 4.867113 GTGCACGTAAGCAGATGGCAAC 62.867 54.545 0.00 0.00 46.69 4.17
32 33 2.803937 GTGCACGTAAGCAGATGGCAA 61.804 52.381 0.00 0.00 46.69 4.52
33 34 1.298157 GTGCACGTAAGCAGATGGCA 61.298 55.000 0.00 0.00 46.69 4.92
34 35 1.298157 TGTGCACGTAAGCAGATGGC 61.298 55.000 13.13 0.00 46.69 4.40
35 36 0.443869 GTGTGCACGTAAGCAGATGG 59.556 55.000 13.13 0.00 46.69 3.51
36 37 1.432514 AGTGTGCACGTAAGCAGATG 58.567 50.000 13.13 0.00 46.69 2.90
37 38 2.417379 CCTAGTGTGCACGTAAGCAGAT 60.417 50.000 13.13 0.00 46.69 2.90
38 39 1.067846 CCTAGTGTGCACGTAAGCAGA 60.068 52.381 13.13 0.00 46.69 4.26
39 40 1.350193 CCTAGTGTGCACGTAAGCAG 58.650 55.000 13.13 3.27 46.69 4.24
40 41 0.669318 GCCTAGTGTGCACGTAAGCA 60.669 55.000 13.13 0.00 43.35 3.91
41 42 0.669318 TGCCTAGTGTGCACGTAAGC 60.669 55.000 13.13 11.88 45.62 3.09
42 43 1.336887 ACTGCCTAGTGTGCACGTAAG 60.337 52.381 13.13 8.65 38.73 2.34
43 44 0.677288 ACTGCCTAGTGTGCACGTAA 59.323 50.000 13.13 0.00 35.34 3.18
44 45 0.677288 AACTGCCTAGTGTGCACGTA 59.323 50.000 13.13 5.46 37.19 3.57
45 46 0.880278 CAACTGCCTAGTGTGCACGT 60.880 55.000 13.13 4.41 37.19 4.49
46 47 1.862123 CAACTGCCTAGTGTGCACG 59.138 57.895 13.13 0.00 37.19 5.34
47 48 1.576421 GCAACTGCCTAGTGTGCAC 59.424 57.895 10.75 10.75 39.05 4.57
48 49 4.063529 GCAACTGCCTAGTGTGCA 57.936 55.556 0.00 0.00 39.05 4.57
58 59 2.032071 AGGGTACACGGCAACTGC 59.968 61.111 0.00 0.00 41.14 4.40
59 60 0.319083 TACAGGGTACACGGCAACTG 59.681 55.000 0.00 0.00 0.00 3.16
60 61 1.050204 TTACAGGGTACACGGCAACT 58.950 50.000 0.00 0.00 0.00 3.16
61 62 1.881591 TTTACAGGGTACACGGCAAC 58.118 50.000 0.00 0.00 0.00 4.17
62 63 2.617774 GTTTTTACAGGGTACACGGCAA 59.382 45.455 0.00 0.00 0.00 4.52
63 64 2.220313 GTTTTTACAGGGTACACGGCA 58.780 47.619 0.00 0.00 0.00 5.69
64 65 2.031769 GTGTTTTTACAGGGTACACGGC 60.032 50.000 0.00 0.00 31.05 5.68
65 66 3.204526 TGTGTTTTTACAGGGTACACGG 58.795 45.455 0.00 0.00 41.40 4.94
66 67 4.319911 CCATGTGTTTTTACAGGGTACACG 60.320 45.833 1.74 0.00 45.00 4.49
67 68 5.116069 CCATGTGTTTTTACAGGGTACAC 57.884 43.478 1.74 0.00 45.00 2.90
73 74 4.037923 AGAGTTGCCATGTGTTTTTACAGG 59.962 41.667 0.00 0.00 33.44 4.00
74 75 4.977963 CAGAGTTGCCATGTGTTTTTACAG 59.022 41.667 0.00 0.00 33.44 2.74
75 76 4.202101 CCAGAGTTGCCATGTGTTTTTACA 60.202 41.667 0.00 0.00 34.63 2.41
76 77 4.202111 ACCAGAGTTGCCATGTGTTTTTAC 60.202 41.667 0.00 0.00 0.00 2.01
77 78 3.957497 ACCAGAGTTGCCATGTGTTTTTA 59.043 39.130 0.00 0.00 0.00 1.52
78 79 2.765699 ACCAGAGTTGCCATGTGTTTTT 59.234 40.909 0.00 0.00 0.00 1.94
79 80 2.387757 ACCAGAGTTGCCATGTGTTTT 58.612 42.857 0.00 0.00 0.00 2.43
80 81 2.071778 ACCAGAGTTGCCATGTGTTT 57.928 45.000 0.00 0.00 0.00 2.83
81 82 2.949177 TACCAGAGTTGCCATGTGTT 57.051 45.000 0.00 0.00 0.00 3.32
82 83 2.949177 TTACCAGAGTTGCCATGTGT 57.051 45.000 0.00 0.00 0.00 3.72
83 84 4.582701 TTTTTACCAGAGTTGCCATGTG 57.417 40.909 0.00 0.00 0.00 3.21
103 104 7.014808 TGCTTTATAAGTAGGTGGCAACTTTTT 59.985 33.333 11.85 8.44 37.19 1.94
104 105 6.492087 TGCTTTATAAGTAGGTGGCAACTTTT 59.508 34.615 11.85 8.83 37.19 2.27
105 106 6.007703 TGCTTTATAAGTAGGTGGCAACTTT 58.992 36.000 11.85 1.77 37.19 2.66
106 107 5.414765 GTGCTTTATAAGTAGGTGGCAACTT 59.585 40.000 11.85 9.49 39.25 2.66
107 108 4.941873 GTGCTTTATAAGTAGGTGGCAACT 59.058 41.667 11.18 11.18 37.61 3.16
108 109 4.698304 TGTGCTTTATAAGTAGGTGGCAAC 59.302 41.667 0.00 0.00 0.00 4.17
109 110 4.698304 GTGTGCTTTATAAGTAGGTGGCAA 59.302 41.667 0.00 0.00 0.00 4.52
110 111 4.019681 AGTGTGCTTTATAAGTAGGTGGCA 60.020 41.667 0.00 0.00 0.00 4.92
111 112 4.514401 AGTGTGCTTTATAAGTAGGTGGC 58.486 43.478 0.00 0.00 0.00 5.01
112 113 6.281405 CCTAGTGTGCTTTATAAGTAGGTGG 58.719 44.000 0.00 0.00 32.99 4.61
113 114 6.281405 CCCTAGTGTGCTTTATAAGTAGGTG 58.719 44.000 0.00 0.00 34.97 4.00
114 115 5.163332 GCCCTAGTGTGCTTTATAAGTAGGT 60.163 44.000 0.00 0.00 34.97 3.08
115 116 5.163343 TGCCCTAGTGTGCTTTATAAGTAGG 60.163 44.000 0.00 0.00 36.06 3.18
116 117 5.914033 TGCCCTAGTGTGCTTTATAAGTAG 58.086 41.667 0.00 0.00 0.00 2.57
117 118 5.943349 TGCCCTAGTGTGCTTTATAAGTA 57.057 39.130 0.00 0.00 0.00 2.24
118 119 4.837093 TGCCCTAGTGTGCTTTATAAGT 57.163 40.909 0.00 0.00 0.00 2.24
119 120 6.498304 CAATTGCCCTAGTGTGCTTTATAAG 58.502 40.000 0.00 0.00 0.00 1.73
120 121 5.163561 GCAATTGCCCTAGTGTGCTTTATAA 60.164 40.000 20.06 0.00 34.31 0.98
121 122 4.338118 GCAATTGCCCTAGTGTGCTTTATA 59.662 41.667 20.06 0.00 34.31 0.98
122 123 3.131046 GCAATTGCCCTAGTGTGCTTTAT 59.869 43.478 20.06 0.00 34.31 1.40
123 124 2.491693 GCAATTGCCCTAGTGTGCTTTA 59.508 45.455 20.06 0.00 34.31 1.85
124 125 1.273327 GCAATTGCCCTAGTGTGCTTT 59.727 47.619 20.06 0.00 34.31 3.51
125 126 0.890683 GCAATTGCCCTAGTGTGCTT 59.109 50.000 20.06 0.00 34.31 3.91
126 127 2.571548 GCAATTGCCCTAGTGTGCT 58.428 52.632 20.06 0.00 34.31 4.40
137 138 2.125832 AGCGCACATGGCAATTGC 60.126 55.556 22.47 22.47 45.17 3.56
138 139 2.449525 GCAGCGCACATGGCAATTG 61.450 57.895 11.47 0.00 45.17 2.32
139 140 2.125832 GCAGCGCACATGGCAATT 60.126 55.556 11.47 0.00 45.17 2.32
140 141 2.437518 TTTGCAGCGCACATGGCAAT 62.438 50.000 11.47 0.00 44.70 3.56
141 142 2.639883 TTTTGCAGCGCACATGGCAA 62.640 50.000 11.47 14.31 45.17 4.52
142 143 3.148031 TTTTGCAGCGCACATGGCA 62.148 52.632 11.47 8.47 45.17 4.92
143 144 2.356075 TTTTGCAGCGCACATGGC 60.356 55.556 11.47 5.57 38.71 4.40
144 145 0.668096 ATGTTTTGCAGCGCACATGG 60.668 50.000 11.47 0.00 38.71 3.66
145 146 1.979897 TATGTTTTGCAGCGCACATG 58.020 45.000 11.47 0.00 38.71 3.21
146 147 2.532235 CATATGTTTTGCAGCGCACAT 58.468 42.857 11.47 12.19 38.71 3.21
147 148 1.402588 CCATATGTTTTGCAGCGCACA 60.403 47.619 11.47 4.16 38.71 4.57
148 149 1.270971 CCATATGTTTTGCAGCGCAC 58.729 50.000 11.47 0.68 38.71 5.34
149 150 0.458197 GCCATATGTTTTGCAGCGCA 60.458 50.000 11.47 0.00 36.47 6.09
150 151 0.458197 TGCCATATGTTTTGCAGCGC 60.458 50.000 0.00 0.00 0.00 5.92
151 152 1.655099 GTTGCCATATGTTTTGCAGCG 59.345 47.619 1.24 0.00 34.81 5.18
152 153 2.963432 AGTTGCCATATGTTTTGCAGC 58.037 42.857 9.45 9.45 34.81 5.25
153 154 4.107622 GCTAGTTGCCATATGTTTTGCAG 58.892 43.478 1.24 0.00 34.81 4.41
154 155 3.509184 TGCTAGTTGCCATATGTTTTGCA 59.491 39.130 1.24 1.00 42.00 4.08
155 156 4.107622 CTGCTAGTTGCCATATGTTTTGC 58.892 43.478 1.24 0.00 42.00 3.68
156 157 4.107622 GCTGCTAGTTGCCATATGTTTTG 58.892 43.478 1.24 0.00 42.00 2.44
157 158 4.019174 AGCTGCTAGTTGCCATATGTTTT 58.981 39.130 0.00 0.00 42.00 2.43
158 159 3.624777 AGCTGCTAGTTGCCATATGTTT 58.375 40.909 0.00 0.00 42.00 2.83
159 160 3.287867 AGCTGCTAGTTGCCATATGTT 57.712 42.857 0.00 0.00 42.00 2.71
160 161 2.947652 CAAGCTGCTAGTTGCCATATGT 59.052 45.455 0.90 0.00 42.00 2.29
161 162 2.292569 CCAAGCTGCTAGTTGCCATATG 59.707 50.000 0.90 0.00 42.00 1.78
162 163 2.579873 CCAAGCTGCTAGTTGCCATAT 58.420 47.619 0.90 0.00 42.00 1.78
163 164 1.408683 CCCAAGCTGCTAGTTGCCATA 60.409 52.381 0.90 0.00 42.00 2.74
164 165 0.682209 CCCAAGCTGCTAGTTGCCAT 60.682 55.000 0.90 0.00 42.00 4.40
165 166 1.303561 CCCAAGCTGCTAGTTGCCA 60.304 57.895 0.90 0.00 42.00 4.92
166 167 1.303643 ACCCAAGCTGCTAGTTGCC 60.304 57.895 0.90 0.00 42.00 4.52
167 168 0.890996 ACACCCAAGCTGCTAGTTGC 60.891 55.000 0.90 0.00 43.25 4.17
168 169 0.877071 CACACCCAAGCTGCTAGTTG 59.123 55.000 0.90 0.00 0.00 3.16
169 170 0.764890 TCACACCCAAGCTGCTAGTT 59.235 50.000 0.90 0.00 0.00 2.24
170 171 0.322975 CTCACACCCAAGCTGCTAGT 59.677 55.000 0.90 0.00 0.00 2.57
171 172 0.610174 TCTCACACCCAAGCTGCTAG 59.390 55.000 0.90 0.00 0.00 3.42
172 173 0.610174 CTCTCACACCCAAGCTGCTA 59.390 55.000 0.90 0.00 0.00 3.49
173 174 1.123861 TCTCTCACACCCAAGCTGCT 61.124 55.000 0.00 0.00 0.00 4.24
174 175 0.673022 CTCTCTCACACCCAAGCTGC 60.673 60.000 0.00 0.00 0.00 5.25
175 176 0.036577 CCTCTCTCACACCCAAGCTG 60.037 60.000 0.00 0.00 0.00 4.24
176 177 0.178921 TCCTCTCTCACACCCAAGCT 60.179 55.000 0.00 0.00 0.00 3.74
177 178 0.248843 CTCCTCTCTCACACCCAAGC 59.751 60.000 0.00 0.00 0.00 4.01
178 179 1.548269 GTCTCCTCTCTCACACCCAAG 59.452 57.143 0.00 0.00 0.00 3.61
179 180 1.633774 GTCTCCTCTCTCACACCCAA 58.366 55.000 0.00 0.00 0.00 4.12
180 181 0.609406 CGTCTCCTCTCTCACACCCA 60.609 60.000 0.00 0.00 0.00 4.51
181 182 1.316706 CCGTCTCCTCTCTCACACCC 61.317 65.000 0.00 0.00 0.00 4.61
182 183 1.316706 CCCGTCTCCTCTCTCACACC 61.317 65.000 0.00 0.00 0.00 4.16
183 184 1.939769 GCCCGTCTCCTCTCTCACAC 61.940 65.000 0.00 0.00 0.00 3.82
184 185 1.679305 GCCCGTCTCCTCTCTCACA 60.679 63.158 0.00 0.00 0.00 3.58
185 186 2.766400 CGCCCGTCTCCTCTCTCAC 61.766 68.421 0.00 0.00 0.00 3.51
186 187 2.438614 CGCCCGTCTCCTCTCTCA 60.439 66.667 0.00 0.00 0.00 3.27
187 188 2.438795 ACGCCCGTCTCCTCTCTC 60.439 66.667 0.00 0.00 0.00 3.20
188 189 2.752238 CACGCCCGTCTCCTCTCT 60.752 66.667 0.00 0.00 0.00 3.10
189 190 3.063084 ACACGCCCGTCTCCTCTC 61.063 66.667 0.00 0.00 0.00 3.20
190 191 3.374402 CACACGCCCGTCTCCTCT 61.374 66.667 0.00 0.00 0.00 3.69
191 192 4.436998 CCACACGCCCGTCTCCTC 62.437 72.222 0.00 0.00 0.00 3.71
202 203 4.758251 TGCCATCTCGCCCACACG 62.758 66.667 0.00 0.00 0.00 4.49
203 204 1.315257 ATTTGCCATCTCGCCCACAC 61.315 55.000 0.00 0.00 0.00 3.82
204 205 1.001020 ATTTGCCATCTCGCCCACA 60.001 52.632 0.00 0.00 0.00 4.17
205 206 1.434696 CATTTGCCATCTCGCCCAC 59.565 57.895 0.00 0.00 0.00 4.61
206 207 2.417257 GCATTTGCCATCTCGCCCA 61.417 57.895 0.00 0.00 34.31 5.36
207 208 2.414594 GCATTTGCCATCTCGCCC 59.585 61.111 0.00 0.00 34.31 6.13
217 218 0.109132 GCTAGTGTGTGGGCATTTGC 60.109 55.000 0.00 0.00 41.14 3.68
218 219 0.527565 GGCTAGTGTGTGGGCATTTG 59.472 55.000 0.00 0.00 31.56 2.32
219 220 0.611896 GGGCTAGTGTGTGGGCATTT 60.612 55.000 0.00 0.00 33.14 2.32
220 221 1.000896 GGGCTAGTGTGTGGGCATT 60.001 57.895 0.00 0.00 33.14 3.56
221 222 1.500783 AAGGGCTAGTGTGTGGGCAT 61.501 55.000 0.00 0.00 33.14 4.40
222 223 2.153401 AAGGGCTAGTGTGTGGGCA 61.153 57.895 0.00 0.00 33.14 5.36
223 224 1.675641 CAAGGGCTAGTGTGTGGGC 60.676 63.158 0.00 0.00 0.00 5.36
224 225 0.606401 CACAAGGGCTAGTGTGTGGG 60.606 60.000 3.62 0.00 40.22 4.61
225 226 1.237285 GCACAAGGGCTAGTGTGTGG 61.237 60.000 11.54 0.46 45.60 4.17
226 227 1.568612 CGCACAAGGGCTAGTGTGTG 61.569 60.000 11.54 10.54 46.33 3.82
227 228 1.301716 CGCACAAGGGCTAGTGTGT 60.302 57.895 11.54 0.00 45.60 3.72
228 229 3.566261 CGCACAAGGGCTAGTGTG 58.434 61.111 6.80 6.80 46.40 3.82
229 230 1.301716 CACGCACAAGGGCTAGTGT 60.302 57.895 0.00 0.00 38.02 3.55
230 231 2.680913 GCACGCACAAGGGCTAGTG 61.681 63.158 0.00 0.00 37.60 2.74
231 232 2.358737 GCACGCACAAGGGCTAGT 60.359 61.111 0.00 0.00 37.60 2.57
232 233 1.746615 ATGCACGCACAAGGGCTAG 60.747 57.895 0.00 0.00 42.02 3.42
233 234 2.039974 CATGCACGCACAAGGGCTA 61.040 57.895 0.00 0.00 42.02 3.93
234 235 3.367743 CATGCACGCACAAGGGCT 61.368 61.111 0.00 0.00 42.02 5.19
235 236 4.424566 CCATGCACGCACAAGGGC 62.425 66.667 0.00 0.00 41.82 5.19
236 237 1.804396 TTTCCATGCACGCACAAGGG 61.804 55.000 0.00 0.00 0.00 3.95
237 238 0.387622 CTTTCCATGCACGCACAAGG 60.388 55.000 0.00 0.00 0.00 3.61
238 239 0.311790 ACTTTCCATGCACGCACAAG 59.688 50.000 0.00 0.00 0.00 3.16
239 240 0.030504 CACTTTCCATGCACGCACAA 59.969 50.000 0.00 0.00 0.00 3.33
240 241 1.653667 CACTTTCCATGCACGCACA 59.346 52.632 0.00 0.00 0.00 4.57
241 242 1.081242 CCACTTTCCATGCACGCAC 60.081 57.895 0.00 0.00 0.00 5.34
242 243 2.918345 GCCACTTTCCATGCACGCA 61.918 57.895 0.00 0.00 0.00 5.24
243 244 2.126346 GCCACTTTCCATGCACGC 60.126 61.111 0.00 0.00 0.00 5.34
244 245 2.176546 CGCCACTTTCCATGCACG 59.823 61.111 0.00 0.00 0.00 5.34
245 246 1.081242 CACGCCACTTTCCATGCAC 60.081 57.895 0.00 0.00 0.00 4.57
246 247 1.528076 ACACGCCACTTTCCATGCA 60.528 52.632 0.00 0.00 0.00 3.96
247 248 1.081242 CACACGCCACTTTCCATGC 60.081 57.895 0.00 0.00 0.00 4.06
248 249 1.580942 CCACACGCCACTTTCCATG 59.419 57.895 0.00 0.00 0.00 3.66
249 250 1.603455 CCCACACGCCACTTTCCAT 60.603 57.895 0.00 0.00 0.00 3.41
250 251 2.203280 CCCACACGCCACTTTCCA 60.203 61.111 0.00 0.00 0.00 3.53
251 252 3.670377 GCCCACACGCCACTTTCC 61.670 66.667 0.00 0.00 0.00 3.13
252 253 4.025401 CGCCCACACGCCACTTTC 62.025 66.667 0.00 0.00 0.00 2.62
253 254 4.555709 TCGCCCACACGCCACTTT 62.556 61.111 0.00 0.00 0.00 2.66
254 255 4.555709 TTCGCCCACACGCCACTT 62.556 61.111 0.00 0.00 0.00 3.16
260 261 3.716006 CAGCAGTTCGCCCACACG 61.716 66.667 0.00 0.00 44.04 4.49
261 262 1.891919 TTCAGCAGTTCGCCCACAC 60.892 57.895 0.00 0.00 44.04 3.82
262 263 1.891919 GTTCAGCAGTTCGCCCACA 60.892 57.895 0.00 0.00 44.04 4.17
263 264 2.946762 GTTCAGCAGTTCGCCCAC 59.053 61.111 0.00 0.00 44.04 4.61
264 265 2.664851 CGTTCAGCAGTTCGCCCA 60.665 61.111 0.00 0.00 44.04 5.36
275 276 2.203139 TGGTGTGTGGGCGTTCAG 60.203 61.111 0.00 0.00 0.00 3.02
276 277 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
277 278 3.660111 GCTGGTGTGTGGGCGTTC 61.660 66.667 0.00 0.00 0.00 3.95
282 283 4.351054 GAGGGGCTGGTGTGTGGG 62.351 72.222 0.00 0.00 0.00 4.61
283 284 4.351054 GGAGGGGCTGGTGTGTGG 62.351 72.222 0.00 0.00 0.00 4.17
284 285 4.351054 GGGAGGGGCTGGTGTGTG 62.351 72.222 0.00 0.00 0.00 3.82
294 295 2.824880 TTTCACCACACGGGAGGGG 61.825 63.158 5.98 0.00 41.15 4.79
295 296 1.599797 GTTTCACCACACGGGAGGG 60.600 63.158 5.98 1.91 41.15 4.30
296 297 1.959226 CGTTTCACCACACGGGAGG 60.959 63.158 0.00 0.00 41.15 4.30
297 298 3.637714 CGTTTCACCACACGGGAG 58.362 61.111 0.00 0.00 41.15 4.30
301 302 4.007940 CGGCCGTTTCACCACACG 62.008 66.667 19.50 0.00 36.12 4.49
302 303 2.898343 ACGGCCGTTTCACCACAC 60.898 61.111 28.70 0.00 0.00 3.82
303 304 2.897846 CACGGCCGTTTCACCACA 60.898 61.111 32.11 0.00 0.00 4.17
304 305 2.898343 ACACGGCCGTTTCACCAC 60.898 61.111 32.11 0.00 0.00 4.16
305 306 2.897846 CACACGGCCGTTTCACCA 60.898 61.111 32.11 0.00 0.00 4.17
306 307 3.656045 CCACACGGCCGTTTCACC 61.656 66.667 32.11 0.00 0.00 4.02
307 308 3.656045 CCCACACGGCCGTTTCAC 61.656 66.667 32.11 0.00 0.00 3.18
316 317 4.752879 ATTCGGTCGCCCACACGG 62.753 66.667 0.00 0.00 0.00 4.94
317 318 3.487202 CATTCGGTCGCCCACACG 61.487 66.667 0.00 0.00 0.00 4.49
318 319 1.669760 TTCATTCGGTCGCCCACAC 60.670 57.895 0.00 0.00 0.00 3.82
319 320 1.669760 GTTCATTCGGTCGCCCACA 60.670 57.895 0.00 0.00 0.00 4.17
320 321 2.736682 CGTTCATTCGGTCGCCCAC 61.737 63.158 0.00 0.00 0.00 4.61
321 322 2.433491 CGTTCATTCGGTCGCCCA 60.433 61.111 0.00 0.00 0.00 5.36
322 323 3.861263 GCGTTCATTCGGTCGCCC 61.861 66.667 0.00 0.00 42.33 6.13
324 325 3.861263 GGGCGTTCATTCGGTCGC 61.861 66.667 0.00 0.00 46.42 5.19
325 326 2.433491 TGGGCGTTCATTCGGTCG 60.433 61.111 0.00 0.00 0.00 4.79
326 327 1.669760 TGTGGGCGTTCATTCGGTC 60.670 57.895 0.00 0.00 0.00 4.79
327 328 1.964373 GTGTGGGCGTTCATTCGGT 60.964 57.895 0.00 0.00 0.00 4.69
328 329 1.963855 TGTGTGGGCGTTCATTCGG 60.964 57.895 0.00 0.00 0.00 4.30
329 330 1.206578 GTGTGTGGGCGTTCATTCG 59.793 57.895 0.00 0.00 0.00 3.34
330 331 1.169661 TGGTGTGTGGGCGTTCATTC 61.170 55.000 0.00 0.00 0.00 2.67
331 332 1.152860 TGGTGTGTGGGCGTTCATT 60.153 52.632 0.00 0.00 0.00 2.57
332 333 1.600636 CTGGTGTGTGGGCGTTCAT 60.601 57.895 0.00 0.00 0.00 2.57
333 334 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
334 335 2.978010 CCTGGTGTGTGGGCGTTC 60.978 66.667 0.00 0.00 0.00 3.95
339 340 3.850098 GACTGGCCTGGTGTGTGGG 62.850 68.421 14.82 0.00 0.00 4.61
340 341 2.281761 GACTGGCCTGGTGTGTGG 60.282 66.667 14.82 0.00 0.00 4.17
341 342 2.281761 GGACTGGCCTGGTGTGTG 60.282 66.667 14.82 0.00 0.00 3.82
352 353 0.456221 CTAGTGCCACGTAGGACTGG 59.544 60.000 17.70 11.34 41.22 4.00
353 354 1.460504 TCTAGTGCCACGTAGGACTG 58.539 55.000 17.70 8.26 41.22 3.51
354 355 2.211250 TTCTAGTGCCACGTAGGACT 57.789 50.000 13.17 13.17 41.22 3.85
355 356 2.029649 TGTTTCTAGTGCCACGTAGGAC 60.030 50.000 0.00 0.00 41.22 3.85
356 357 2.241160 TGTTTCTAGTGCCACGTAGGA 58.759 47.619 8.04 0.00 41.22 2.94
357 358 2.736144 TGTTTCTAGTGCCACGTAGG 57.264 50.000 0.00 0.00 41.84 3.18
358 359 2.348666 GCATGTTTCTAGTGCCACGTAG 59.651 50.000 0.00 0.00 32.88 3.51
359 360 2.343101 GCATGTTTCTAGTGCCACGTA 58.657 47.619 0.00 0.00 32.88 3.57
360 361 1.156736 GCATGTTTCTAGTGCCACGT 58.843 50.000 0.00 0.00 32.88 4.49
361 362 3.975992 GCATGTTTCTAGTGCCACG 57.024 52.632 0.00 0.00 32.88 4.94
365 366 4.156556 TGAATCTTGGCATGTTTCTAGTGC 59.843 41.667 19.01 0.00 38.12 4.40
366 367 5.885230 TGAATCTTGGCATGTTTCTAGTG 57.115 39.130 19.01 0.00 0.00 2.74
367 368 5.163581 GCATGAATCTTGGCATGTTTCTAGT 60.164 40.000 19.01 7.89 42.86 2.57
368 369 5.279384 GCATGAATCTTGGCATGTTTCTAG 58.721 41.667 19.01 14.07 42.86 2.43
369 370 4.201940 CGCATGAATCTTGGCATGTTTCTA 60.202 41.667 19.01 10.19 42.86 2.10
370 371 3.428452 CGCATGAATCTTGGCATGTTTCT 60.428 43.478 19.01 7.54 42.86 2.52
371 372 2.855963 CGCATGAATCTTGGCATGTTTC 59.144 45.455 14.12 14.12 42.86 2.78
372 373 2.883574 CGCATGAATCTTGGCATGTTT 58.116 42.857 0.00 0.00 42.86 2.83
373 374 1.470285 GCGCATGAATCTTGGCATGTT 60.470 47.619 0.30 0.00 42.86 2.71
374 375 0.101759 GCGCATGAATCTTGGCATGT 59.898 50.000 0.30 0.00 42.86 3.21
375 376 0.384309 AGCGCATGAATCTTGGCATG 59.616 50.000 11.47 0.00 43.56 4.06
376 377 0.666913 GAGCGCATGAATCTTGGCAT 59.333 50.000 11.47 0.00 0.00 4.40
377 378 1.708193 CGAGCGCATGAATCTTGGCA 61.708 55.000 11.47 0.00 0.00 4.92
378 379 1.010350 CGAGCGCATGAATCTTGGC 60.010 57.895 11.47 0.93 0.00 4.52
379 380 1.010350 GCGAGCGCATGAATCTTGG 60.010 57.895 11.47 0.00 41.49 3.61
380 381 1.367312 CGCGAGCGCATGAATCTTG 60.367 57.895 11.47 0.00 42.06 3.02
381 382 1.083806 TTCGCGAGCGCATGAATCTT 61.084 50.000 11.47 0.00 42.06 2.40
382 383 1.519234 TTCGCGAGCGCATGAATCT 60.519 52.632 11.47 0.00 42.06 2.40
383 384 1.366961 GTTCGCGAGCGCATGAATC 60.367 57.895 11.47 0.00 42.06 2.52
384 385 2.028766 CTGTTCGCGAGCGCATGAAT 62.029 55.000 18.23 0.00 42.06 2.57
385 386 2.729675 CTGTTCGCGAGCGCATGAA 61.730 57.895 18.23 8.23 42.06 2.57
386 387 3.181290 CTGTTCGCGAGCGCATGA 61.181 61.111 18.23 2.03 42.06 3.07
387 388 3.181290 TCTGTTCGCGAGCGCATG 61.181 61.111 18.23 1.39 42.06 4.06
388 389 3.181967 GTCTGTTCGCGAGCGCAT 61.182 61.111 18.23 0.00 42.06 4.73
397 398 1.702299 GTGGATTCGCGTCTGTTCG 59.298 57.895 5.77 0.00 0.00 3.95
398 399 1.702299 CGTGGATTCGCGTCTGTTC 59.298 57.895 5.77 0.00 41.47 3.18
399 400 3.856508 CGTGGATTCGCGTCTGTT 58.143 55.556 5.77 0.00 41.47 3.16
416 417 1.017177 TTTACATCTCGCCCACACGC 61.017 55.000 0.00 0.00 0.00 5.34
417 418 0.719465 GTTTACATCTCGCCCACACG 59.281 55.000 0.00 0.00 0.00 4.49
418 419 0.719465 CGTTTACATCTCGCCCACAC 59.281 55.000 0.00 0.00 0.00 3.82
419 420 1.017177 GCGTTTACATCTCGCCCACA 61.017 55.000 0.00 0.00 43.41 4.17
420 421 1.713830 GCGTTTACATCTCGCCCAC 59.286 57.895 0.00 0.00 43.41 4.61
421 422 4.195308 GCGTTTACATCTCGCCCA 57.805 55.556 0.00 0.00 43.41 5.36
425 426 0.719465 GTGTGGGCGTTTACATCTCG 59.281 55.000 0.00 0.00 0.00 4.04
426 427 0.719465 CGTGTGGGCGTTTACATCTC 59.281 55.000 0.00 0.00 0.00 2.75
427 428 0.034337 ACGTGTGGGCGTTTACATCT 59.966 50.000 0.00 0.00 43.04 2.90
428 429 0.165079 CACGTGTGGGCGTTTACATC 59.835 55.000 7.58 0.00 43.83 3.06
429 430 0.533308 ACACGTGTGGGCGTTTACAT 60.533 50.000 22.71 0.00 43.83 2.29
430 431 1.153409 ACACGTGTGGGCGTTTACA 60.153 52.632 22.71 0.00 43.83 2.41
431 432 1.277440 CACACGTGTGGGCGTTTAC 59.723 57.895 35.65 0.00 43.83 2.01
432 433 3.720531 CACACGTGTGGGCGTTTA 58.279 55.556 35.65 0.00 43.83 2.01
444 445 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
445 446 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
446 447 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
447 448 0.876399 ACGGAAATGTTAACGCCCAC 59.124 50.000 0.26 0.00 0.00 4.61
448 449 2.469274 TACGGAAATGTTAACGCCCA 57.531 45.000 0.26 0.00 0.00 5.36
449 450 5.482686 TTTATACGGAAATGTTAACGCCC 57.517 39.130 0.26 0.00 0.00 6.13
514 515 4.272489 CAGACATATGTTGGGTTGGATGT 58.728 43.478 10.30 0.00 0.00 3.06
529 530 4.634004 CCGTCTTTTATTGTGCCAGACATA 59.366 41.667 0.00 0.00 34.67 2.29
534 535 1.539388 TGCCGTCTTTTATTGTGCCAG 59.461 47.619 0.00 0.00 0.00 4.85
545 546 3.326747 GTCTTGATGTACTGCCGTCTTT 58.673 45.455 0.00 0.00 0.00 2.52
552 553 8.451748 TCATATATCTACGTCTTGATGTACTGC 58.548 37.037 0.00 0.00 0.00 4.40
788 810 1.180029 GCATGCACCTGGTTTCAGAT 58.820 50.000 14.21 0.00 43.49 2.90
823 846 6.809689 CCTGTGTATGTGTTGTCTCGTATAAA 59.190 38.462 0.00 0.00 0.00 1.40
1107 1130 5.470368 GCGATATTGTCTAGCTTGGTATCA 58.530 41.667 0.00 0.00 0.00 2.15
1119 1142 0.249489 GCTCACCCGCGATATTGTCT 60.249 55.000 8.23 0.00 0.00 3.41
1120 1143 0.249489 AGCTCACCCGCGATATTGTC 60.249 55.000 8.23 0.00 34.40 3.18
1129 1152 1.867233 CAACATGTATAGCTCACCCGC 59.133 52.381 0.00 0.00 0.00 6.13
1131 1154 5.853936 TGTATCAACATGTATAGCTCACCC 58.146 41.667 0.00 0.00 0.00 4.61
1387 1413 0.563173 ATACCCTCTAGCCAGCTGGA 59.437 55.000 37.21 15.88 37.39 3.86
1410 1436 1.557269 GGATGAGGCCACCAGTCACT 61.557 60.000 5.01 0.00 0.00 3.41
1586 4235 5.295431 TGCATCTCGAATTAAACACCTTG 57.705 39.130 0.00 0.00 0.00 3.61
1647 4296 2.685897 TGCCTACCAAAACAGTTGTCAC 59.314 45.455 0.00 0.00 0.00 3.67
1656 4305 2.514803 ACACTGGATGCCTACCAAAAC 58.485 47.619 0.00 0.00 36.95 2.43
1670 4319 6.331369 ACCTTGTCATTTATCAAACACTGG 57.669 37.500 0.00 0.00 0.00 4.00
1673 4322 8.755018 CAAAGAACCTTGTCATTTATCAAACAC 58.245 33.333 0.00 0.00 0.00 3.32
1688 4337 1.134175 ACGCCAACACAAAGAACCTTG 59.866 47.619 0.00 0.00 0.00 3.61
1690 4339 0.738389 CACGCCAACACAAAGAACCT 59.262 50.000 0.00 0.00 0.00 3.50
1712 4361 7.792374 AATGTATGTGAGTAATCGCATCTTT 57.208 32.000 21.33 13.91 40.74 2.52
1869 4518 3.380142 CGAGGGGTTTCACATGTTTTTG 58.620 45.455 0.00 0.00 0.00 2.44
1906 4555 3.445987 AGTGCTCTCTAGGCCTAGTTTT 58.554 45.455 33.84 14.45 34.84 2.43
2001 4650 6.763135 GTGATGAAAGACAGATGGTAGCATTA 59.237 38.462 9.14 0.00 0.00 1.90
2007 4656 3.521560 GCGTGATGAAAGACAGATGGTA 58.478 45.455 0.00 0.00 0.00 3.25
2100 4749 5.074929 ACCATATGAAGGATATCAAGGCCAA 59.925 40.000 5.01 0.00 32.06 4.52
2220 4869 9.750125 AATGTTCTCCTTTAATTCAACTTCAAC 57.250 29.630 0.00 0.00 0.00 3.18
2260 4910 3.308866 GTGTGCGAATACAGGTTGGATAC 59.691 47.826 0.00 0.00 0.00 2.24
2264 4914 0.442310 CGTGTGCGAATACAGGTTGG 59.558 55.000 0.00 0.00 41.33 3.77
2269 4919 1.640428 ATCACCGTGTGCGAATACAG 58.360 50.000 0.00 0.00 41.33 2.74
2285 4935 8.054572 TGTACAAGTATATATACCGGCCTATCA 58.945 37.037 17.52 6.43 33.79 2.15
2305 4957 6.056090 TGCATATTTCCTACACCTGTACAA 57.944 37.500 0.00 0.00 0.00 2.41
2335 4987 8.770010 TTTGTATTTACCCCATTGTATAAGGG 57.230 34.615 0.00 0.00 45.75 3.95
2454 5107 0.247736 CAAGGCCAAGACTAGAGCGT 59.752 55.000 5.01 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.