Multiple sequence alignment - TraesCS5D01G032500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G032500 chr5D 100.000 2907 0 0 1 2907 30064560 30061654 0.000000e+00 5369
1 TraesCS5D01G032500 chr5D 92.201 577 42 3 1750 2325 108696167 108695593 0.000000e+00 813
2 TraesCS5D01G032500 chr5D 90.189 530 47 5 2380 2907 53754603 53754077 0.000000e+00 686
3 TraesCS5D01G032500 chr5D 90.189 530 46 5 2380 2907 198397397 198397922 0.000000e+00 686
4 TraesCS5D01G032500 chr4D 94.724 2085 80 10 383 2453 266757620 266755552 0.000000e+00 3214
5 TraesCS5D01G032500 chr4D 96.915 389 11 1 1 388 116066340 116065952 0.000000e+00 651
6 TraesCS5D01G032500 chr4D 95.630 389 16 1 1 388 410639350 410639738 8.850000e-175 623
7 TraesCS5D01G032500 chr6D 95.132 1397 39 7 383 1752 3818232 3816838 0.000000e+00 2176
8 TraesCS5D01G032500 chr6D 96.915 389 11 1 1 388 366985277 366984889 0.000000e+00 651
9 TraesCS5D01G032500 chr6A 95.141 1379 46 7 383 1752 3690536 3691902 0.000000e+00 2156
10 TraesCS5D01G032500 chr6A 92.659 504 34 3 2404 2905 526949886 526949384 0.000000e+00 723
11 TraesCS5D01G032500 chr6A 91.252 503 40 4 2404 2905 252408965 252409464 0.000000e+00 682
12 TraesCS5D01G032500 chr6B 93.106 1407 55 18 383 1752 9097627 9096226 0.000000e+00 2023
13 TraesCS5D01G032500 chr3D 92.734 578 39 3 1750 2325 145328979 145328403 0.000000e+00 832
14 TraesCS5D01G032500 chr3D 95.630 389 15 2 1 388 236115603 236115990 8.850000e-175 623
15 TraesCS5D01G032500 chr1B 92.982 570 38 2 1750 2318 411017461 411016893 0.000000e+00 830
16 TraesCS5D01G032500 chr2B 92.807 570 39 2 1750 2318 371365367 371364799 0.000000e+00 824
17 TraesCS5D01G032500 chr2B 91.161 577 45 5 1750 2325 367300288 367300859 0.000000e+00 778
18 TraesCS5D01G032500 chr7A 92.374 577 41 3 1750 2325 13618081 13618655 0.000000e+00 819
19 TraesCS5D01G032500 chr3B 91.522 578 43 6 1750 2325 271741989 271741416 0.000000e+00 791
20 TraesCS5D01G032500 chr5B 91.349 578 45 5 1750 2325 128611781 128612355 0.000000e+00 785
21 TraesCS5D01G032500 chr4A 93.861 505 28 2 2404 2907 413552899 413553401 0.000000e+00 758
22 TraesCS5D01G032500 chr4A 97.686 389 8 1 1 388 346676458 346676070 0.000000e+00 667
23 TraesCS5D01G032500 chr3A 91.485 505 34 4 2404 2907 358744714 358744218 0.000000e+00 686
24 TraesCS5D01G032500 chr2D 90.152 528 45 5 2381 2905 256896484 256897007 0.000000e+00 680
25 TraesCS5D01G032500 chr2D 89.962 528 48 5 2381 2905 286678648 286678123 0.000000e+00 676
26 TraesCS5D01G032500 chr7D 89.623 530 48 5 2380 2907 160036401 160036925 0.000000e+00 667
27 TraesCS5D01G032500 chr1D 95.373 389 16 2 1 388 17283466 17283079 4.120000e-173 617
28 TraesCS5D01G032500 chrUn 94.602 389 20 1 1 388 366319507 366319119 4.140000e-168 601
29 TraesCS5D01G032500 chrUn 93.830 389 23 1 1 388 250122014 250122402 4.170000e-163 584
30 TraesCS5D01G032500 chrUn 93.830 389 23 1 1 388 318575400 318575012 4.170000e-163 584


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G032500 chr5D 30061654 30064560 2906 True 5369 5369 100.000 1 2907 1 chr5D.!!$R1 2906
1 TraesCS5D01G032500 chr5D 108695593 108696167 574 True 813 813 92.201 1750 2325 1 chr5D.!!$R3 575
2 TraesCS5D01G032500 chr5D 53754077 53754603 526 True 686 686 90.189 2380 2907 1 chr5D.!!$R2 527
3 TraesCS5D01G032500 chr5D 198397397 198397922 525 False 686 686 90.189 2380 2907 1 chr5D.!!$F1 527
4 TraesCS5D01G032500 chr4D 266755552 266757620 2068 True 3214 3214 94.724 383 2453 1 chr4D.!!$R2 2070
5 TraesCS5D01G032500 chr6D 3816838 3818232 1394 True 2176 2176 95.132 383 1752 1 chr6D.!!$R1 1369
6 TraesCS5D01G032500 chr6A 3690536 3691902 1366 False 2156 2156 95.141 383 1752 1 chr6A.!!$F1 1369
7 TraesCS5D01G032500 chr6A 526949384 526949886 502 True 723 723 92.659 2404 2905 1 chr6A.!!$R1 501
8 TraesCS5D01G032500 chr6B 9096226 9097627 1401 True 2023 2023 93.106 383 1752 1 chr6B.!!$R1 1369
9 TraesCS5D01G032500 chr3D 145328403 145328979 576 True 832 832 92.734 1750 2325 1 chr3D.!!$R1 575
10 TraesCS5D01G032500 chr1B 411016893 411017461 568 True 830 830 92.982 1750 2318 1 chr1B.!!$R1 568
11 TraesCS5D01G032500 chr2B 371364799 371365367 568 True 824 824 92.807 1750 2318 1 chr2B.!!$R1 568
12 TraesCS5D01G032500 chr2B 367300288 367300859 571 False 778 778 91.161 1750 2325 1 chr2B.!!$F1 575
13 TraesCS5D01G032500 chr7A 13618081 13618655 574 False 819 819 92.374 1750 2325 1 chr7A.!!$F1 575
14 TraesCS5D01G032500 chr3B 271741416 271741989 573 True 791 791 91.522 1750 2325 1 chr3B.!!$R1 575
15 TraesCS5D01G032500 chr5B 128611781 128612355 574 False 785 785 91.349 1750 2325 1 chr5B.!!$F1 575
16 TraesCS5D01G032500 chr4A 413552899 413553401 502 False 758 758 93.861 2404 2907 1 chr4A.!!$F1 503
17 TraesCS5D01G032500 chr2D 256896484 256897007 523 False 680 680 90.152 2381 2905 1 chr2D.!!$F1 524
18 TraesCS5D01G032500 chr2D 286678123 286678648 525 True 676 676 89.962 2381 2905 1 chr2D.!!$R1 524
19 TraesCS5D01G032500 chr7D 160036401 160036925 524 False 667 667 89.623 2380 2907 1 chr7D.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.035725 TTCTCCCGCTACTGTCTCGA 60.036 55.0 3.65 0.00 0.00 4.04 F
146 147 0.038166 TCCTTGGTGAGCCCATGTTC 59.962 55.0 0.00 0.00 44.74 3.18 F
147 148 0.038744 CCTTGGTGAGCCCATGTTCT 59.961 55.0 0.00 0.00 44.74 3.01 F
164 165 0.109551 TCTTCTGCTCTTGACGCTCG 60.110 55.0 0.00 0.00 0.00 5.03 F
166 167 0.109551 TTCTGCTCTTGACGCTCGAG 60.110 55.0 8.45 8.45 0.00 4.04 F
1376 1427 0.182537 TGGCTTGCAGTACACCACTT 59.817 50.0 0.00 0.00 34.26 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 1348 0.171455 CGCTGAAGAAGAGGTACGCT 59.829 55.000 0.0 0.0 43.09 5.07 R
1375 1426 0.988832 AGGTTATGGCGAAGGTGGAA 59.011 50.000 0.0 0.0 0.00 3.53 R
1376 1427 0.988832 AAGGTTATGGCGAAGGTGGA 59.011 50.000 0.0 0.0 0.00 4.02 R
1473 1524 1.377202 GTGATCTTTGCGGCTCCCA 60.377 57.895 0.0 0.0 0.00 4.37 R
1667 1736 2.105466 GCAGCCAGAAGGAGAAGCG 61.105 63.158 0.0 0.0 36.89 4.68 R
2833 2914 0.036732 AGATGGCGTTGGAAAGCTGA 59.963 50.000 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.949690 AATCTTGACATCTTTGATGAATCCA 57.050 32.000 13.63 4.34 0.00 3.41
28 29 6.997239 TCTTGACATCTTTGATGAATCCAG 57.003 37.500 13.63 4.42 0.00 3.86
29 30 5.356190 TCTTGACATCTTTGATGAATCCAGC 59.644 40.000 13.63 0.00 0.00 4.85
30 31 3.949754 TGACATCTTTGATGAATCCAGCC 59.050 43.478 13.63 0.00 0.00 4.85
31 32 3.294214 ACATCTTTGATGAATCCAGCCC 58.706 45.455 13.63 0.00 0.00 5.19
32 33 2.042686 TCTTTGATGAATCCAGCCCG 57.957 50.000 0.00 0.00 0.00 6.13
33 34 1.559219 TCTTTGATGAATCCAGCCCGA 59.441 47.619 0.00 0.00 0.00 5.14
34 35 2.026356 TCTTTGATGAATCCAGCCCGAA 60.026 45.455 0.00 0.00 0.00 4.30
35 36 1.750193 TTGATGAATCCAGCCCGAAC 58.250 50.000 0.00 0.00 0.00 3.95
36 37 0.911769 TGATGAATCCAGCCCGAACT 59.088 50.000 0.00 0.00 0.00 3.01
37 38 1.303309 GATGAATCCAGCCCGAACTG 58.697 55.000 0.00 0.00 37.42 3.16
38 39 0.911769 ATGAATCCAGCCCGAACTGA 59.088 50.000 6.26 0.00 40.25 3.41
39 40 0.690192 TGAATCCAGCCCGAACTGAA 59.310 50.000 6.26 0.00 40.25 3.02
40 41 1.339055 TGAATCCAGCCCGAACTGAAG 60.339 52.381 6.26 0.00 40.25 3.02
41 42 0.678048 AATCCAGCCCGAACTGAAGC 60.678 55.000 6.26 0.00 40.25 3.86
42 43 1.841302 ATCCAGCCCGAACTGAAGCA 61.841 55.000 6.26 0.00 40.25 3.91
43 44 1.377725 CCAGCCCGAACTGAAGCAT 60.378 57.895 6.26 0.00 40.25 3.79
44 45 1.651240 CCAGCCCGAACTGAAGCATG 61.651 60.000 6.26 0.00 40.25 4.06
45 46 0.957395 CAGCCCGAACTGAAGCATGT 60.957 55.000 0.00 0.00 40.25 3.21
46 47 0.674895 AGCCCGAACTGAAGCATGTC 60.675 55.000 0.00 0.00 0.00 3.06
47 48 1.970917 GCCCGAACTGAAGCATGTCG 61.971 60.000 0.00 0.00 0.00 4.35
48 49 1.361668 CCCGAACTGAAGCATGTCGG 61.362 60.000 10.76 10.76 38.79 4.79
49 50 1.421485 CGAACTGAAGCATGTCGGC 59.579 57.895 0.00 0.00 0.00 5.54
50 51 1.291184 CGAACTGAAGCATGTCGGCA 61.291 55.000 0.00 0.00 35.83 5.69
51 52 0.874390 GAACTGAAGCATGTCGGCAA 59.126 50.000 0.00 0.00 35.83 4.52
52 53 0.877071 AACTGAAGCATGTCGGCAAG 59.123 50.000 0.00 0.00 35.83 4.01
53 54 1.136147 CTGAAGCATGTCGGCAAGC 59.864 57.895 9.60 9.60 39.38 4.01
54 55 2.262471 CTGAAGCATGTCGGCAAGCC 62.262 60.000 14.37 0.00 39.88 4.35
65 66 3.302344 GCAAGCCGGGCCTCAAAA 61.302 61.111 17.02 0.00 0.00 2.44
66 67 2.964978 CAAGCCGGGCCTCAAAAG 59.035 61.111 17.02 0.00 0.00 2.27
67 68 2.283173 AAGCCGGGCCTCAAAAGG 60.283 61.111 17.02 0.00 46.44 3.11
76 77 3.272925 CCTCAAAAGGCCCTTCTCC 57.727 57.895 0.00 0.00 35.37 3.71
77 78 0.323816 CCTCAAAAGGCCCTTCTCCC 60.324 60.000 0.00 0.00 35.37 4.30
78 79 0.678048 CTCAAAAGGCCCTTCTCCCG 60.678 60.000 0.00 0.00 0.00 5.14
79 80 2.035783 AAAAGGCCCTTCTCCCGC 59.964 61.111 0.00 0.00 0.00 6.13
80 81 2.539081 AAAAGGCCCTTCTCCCGCT 61.539 57.895 0.00 0.00 0.00 5.52
81 82 1.205460 AAAAGGCCCTTCTCCCGCTA 61.205 55.000 0.00 0.00 0.00 4.26
82 83 1.911702 AAAGGCCCTTCTCCCGCTAC 61.912 60.000 0.00 0.00 0.00 3.58
83 84 2.764547 GGCCCTTCTCCCGCTACT 60.765 66.667 0.00 0.00 0.00 2.57
84 85 2.501610 GCCCTTCTCCCGCTACTG 59.498 66.667 0.00 0.00 0.00 2.74
85 86 2.359967 GCCCTTCTCCCGCTACTGT 61.360 63.158 0.00 0.00 0.00 3.55
86 87 1.817209 CCCTTCTCCCGCTACTGTC 59.183 63.158 0.00 0.00 0.00 3.51
87 88 0.684805 CCCTTCTCCCGCTACTGTCT 60.685 60.000 0.00 0.00 0.00 3.41
88 89 0.741915 CCTTCTCCCGCTACTGTCTC 59.258 60.000 0.00 0.00 0.00 3.36
89 90 0.378962 CTTCTCCCGCTACTGTCTCG 59.621 60.000 0.00 0.00 0.00 4.04
90 91 0.035725 TTCTCCCGCTACTGTCTCGA 60.036 55.000 3.65 0.00 0.00 4.04
91 92 0.180642 TCTCCCGCTACTGTCTCGAT 59.819 55.000 3.65 0.00 0.00 3.59
92 93 0.589223 CTCCCGCTACTGTCTCGATC 59.411 60.000 3.65 0.00 0.00 3.69
93 94 0.180642 TCCCGCTACTGTCTCGATCT 59.819 55.000 3.65 0.00 0.00 2.75
94 95 1.025812 CCCGCTACTGTCTCGATCTT 58.974 55.000 3.65 0.00 0.00 2.40
95 96 1.268794 CCCGCTACTGTCTCGATCTTG 60.269 57.143 3.65 0.00 0.00 3.02
96 97 1.671328 CCGCTACTGTCTCGATCTTGA 59.329 52.381 3.65 0.00 0.00 3.02
97 98 2.097629 CCGCTACTGTCTCGATCTTGAA 59.902 50.000 3.65 0.00 0.00 2.69
98 99 3.102276 CGCTACTGTCTCGATCTTGAAC 58.898 50.000 0.00 0.00 0.00 3.18
99 100 3.181505 CGCTACTGTCTCGATCTTGAACT 60.182 47.826 0.00 0.00 0.00 3.01
100 101 4.101942 GCTACTGTCTCGATCTTGAACTG 58.898 47.826 0.00 0.00 0.00 3.16
101 102 4.142578 GCTACTGTCTCGATCTTGAACTGA 60.143 45.833 0.00 0.00 0.00 3.41
102 103 5.449862 GCTACTGTCTCGATCTTGAACTGAT 60.450 44.000 0.00 0.00 0.00 2.90
103 104 4.742417 ACTGTCTCGATCTTGAACTGATG 58.258 43.478 0.00 0.00 0.00 3.07
104 105 4.219507 ACTGTCTCGATCTTGAACTGATGT 59.780 41.667 0.00 0.00 0.00 3.06
105 106 5.139435 TGTCTCGATCTTGAACTGATGTT 57.861 39.130 0.00 0.00 39.42 2.71
106 107 4.925646 TGTCTCGATCTTGAACTGATGTTG 59.074 41.667 0.00 0.00 36.39 3.33
107 108 4.926238 GTCTCGATCTTGAACTGATGTTGT 59.074 41.667 0.00 0.00 36.39 3.32
108 109 5.406780 GTCTCGATCTTGAACTGATGTTGTT 59.593 40.000 0.00 0.00 36.39 2.83
109 110 5.406477 TCTCGATCTTGAACTGATGTTGTTG 59.594 40.000 0.00 0.00 36.39 3.33
110 111 5.056480 TCGATCTTGAACTGATGTTGTTGT 58.944 37.500 0.00 0.00 36.39 3.32
111 112 5.177511 TCGATCTTGAACTGATGTTGTTGTC 59.822 40.000 0.00 0.00 36.39 3.18
112 113 5.050159 CGATCTTGAACTGATGTTGTTGTCA 60.050 40.000 0.00 0.00 36.39 3.58
113 114 6.347969 CGATCTTGAACTGATGTTGTTGTCAT 60.348 38.462 0.00 0.00 36.39 3.06
114 115 6.304356 TCTTGAACTGATGTTGTTGTCATC 57.696 37.500 0.00 0.00 41.16 2.92
115 116 6.057533 TCTTGAACTGATGTTGTTGTCATCT 58.942 36.000 7.30 0.00 41.30 2.90
116 117 5.678132 TGAACTGATGTTGTTGTCATCTG 57.322 39.130 9.87 9.87 42.63 2.90
118 119 5.237127 TGAACTGATGTTGTTGTCATCTGTC 59.763 40.000 14.95 10.80 46.08 3.51
119 120 4.965814 ACTGATGTTGTTGTCATCTGTCT 58.034 39.130 10.86 0.00 44.77 3.41
120 121 6.101650 ACTGATGTTGTTGTCATCTGTCTA 57.898 37.500 10.86 0.00 44.77 2.59
121 122 5.928839 ACTGATGTTGTTGTCATCTGTCTAC 59.071 40.000 10.86 0.00 44.77 2.59
122 123 5.237815 TGATGTTGTTGTCATCTGTCTACC 58.762 41.667 7.30 0.00 41.30 3.18
123 124 4.955811 TGTTGTTGTCATCTGTCTACCT 57.044 40.909 0.00 0.00 0.00 3.08
124 125 4.883083 TGTTGTTGTCATCTGTCTACCTC 58.117 43.478 0.00 0.00 0.00 3.85
125 126 4.246458 GTTGTTGTCATCTGTCTACCTCC 58.754 47.826 0.00 0.00 0.00 4.30
126 127 3.779444 TGTTGTCATCTGTCTACCTCCT 58.221 45.455 0.00 0.00 0.00 3.69
127 128 4.160329 TGTTGTCATCTGTCTACCTCCTT 58.840 43.478 0.00 0.00 0.00 3.36
128 129 4.220821 TGTTGTCATCTGTCTACCTCCTTC 59.779 45.833 0.00 0.00 0.00 3.46
129 130 3.366396 TGTCATCTGTCTACCTCCTTCC 58.634 50.000 0.00 0.00 0.00 3.46
130 131 3.011821 TGTCATCTGTCTACCTCCTTCCT 59.988 47.826 0.00 0.00 0.00 3.36
131 132 4.027437 GTCATCTGTCTACCTCCTTCCTT 58.973 47.826 0.00 0.00 0.00 3.36
132 133 4.026744 TCATCTGTCTACCTCCTTCCTTG 58.973 47.826 0.00 0.00 0.00 3.61
133 134 2.821437 TCTGTCTACCTCCTTCCTTGG 58.179 52.381 0.00 0.00 0.00 3.61
134 135 2.111972 TCTGTCTACCTCCTTCCTTGGT 59.888 50.000 0.00 0.00 37.83 3.67
135 136 2.234908 CTGTCTACCTCCTTCCTTGGTG 59.765 54.545 0.00 0.00 35.48 4.17
136 137 2.158219 TGTCTACCTCCTTCCTTGGTGA 60.158 50.000 0.00 0.00 35.48 4.02
137 138 2.498078 GTCTACCTCCTTCCTTGGTGAG 59.502 54.545 0.00 0.00 35.48 3.51
138 139 1.208293 CTACCTCCTTCCTTGGTGAGC 59.792 57.143 0.00 0.00 35.48 4.26
139 140 1.301293 CCTCCTTCCTTGGTGAGCC 59.699 63.158 0.00 0.00 0.00 4.70
140 141 1.301293 CTCCTTCCTTGGTGAGCCC 59.699 63.158 0.00 0.00 0.00 5.19
141 142 1.463214 TCCTTCCTTGGTGAGCCCA 60.463 57.895 0.00 0.00 43.27 5.36
142 143 0.846427 TCCTTCCTTGGTGAGCCCAT 60.846 55.000 0.00 0.00 44.74 4.00
143 144 0.682209 CCTTCCTTGGTGAGCCCATG 60.682 60.000 0.00 0.00 44.74 3.66
144 145 0.038744 CTTCCTTGGTGAGCCCATGT 59.961 55.000 0.00 0.00 44.74 3.21
145 146 0.482446 TTCCTTGGTGAGCCCATGTT 59.518 50.000 0.00 0.00 44.74 2.71
146 147 0.038166 TCCTTGGTGAGCCCATGTTC 59.962 55.000 0.00 0.00 44.74 3.18
147 148 0.038744 CCTTGGTGAGCCCATGTTCT 59.961 55.000 0.00 0.00 44.74 3.01
148 149 1.548582 CCTTGGTGAGCCCATGTTCTT 60.549 52.381 0.00 0.00 44.74 2.52
149 150 1.815003 CTTGGTGAGCCCATGTTCTTC 59.185 52.381 0.00 0.00 44.74 2.87
150 151 1.067295 TGGTGAGCCCATGTTCTTCT 58.933 50.000 0.00 0.00 38.72 2.85
151 152 1.271543 TGGTGAGCCCATGTTCTTCTG 60.272 52.381 0.00 0.00 38.72 3.02
152 153 0.807496 GTGAGCCCATGTTCTTCTGC 59.193 55.000 0.00 0.00 0.00 4.26
153 154 0.694771 TGAGCCCATGTTCTTCTGCT 59.305 50.000 0.00 0.00 0.00 4.24
154 155 1.339438 TGAGCCCATGTTCTTCTGCTC 60.339 52.381 0.00 0.00 44.11 4.26
155 156 0.990374 AGCCCATGTTCTTCTGCTCT 59.010 50.000 0.00 0.00 0.00 4.09
156 157 1.353694 AGCCCATGTTCTTCTGCTCTT 59.646 47.619 0.00 0.00 0.00 2.85
157 158 1.471684 GCCCATGTTCTTCTGCTCTTG 59.528 52.381 0.00 0.00 0.00 3.02
158 159 2.877300 GCCCATGTTCTTCTGCTCTTGA 60.877 50.000 0.00 0.00 0.00 3.02
159 160 2.746362 CCCATGTTCTTCTGCTCTTGAC 59.254 50.000 0.00 0.00 0.00 3.18
160 161 2.414481 CCATGTTCTTCTGCTCTTGACG 59.586 50.000 0.00 0.00 0.00 4.35
161 162 1.502231 TGTTCTTCTGCTCTTGACGC 58.498 50.000 0.00 0.00 0.00 5.19
162 163 1.069204 TGTTCTTCTGCTCTTGACGCT 59.931 47.619 0.00 0.00 0.00 5.07
163 164 1.724082 GTTCTTCTGCTCTTGACGCTC 59.276 52.381 0.00 0.00 0.00 5.03
164 165 0.109551 TCTTCTGCTCTTGACGCTCG 60.110 55.000 0.00 0.00 0.00 5.03
165 166 0.109551 CTTCTGCTCTTGACGCTCGA 60.110 55.000 0.00 0.00 0.00 4.04
166 167 0.109551 TTCTGCTCTTGACGCTCGAG 60.110 55.000 8.45 8.45 0.00 4.04
168 169 2.883253 GCTCTTGACGCTCGAGCC 60.883 66.667 30.66 18.47 43.22 4.70
169 170 2.578178 CTCTTGACGCTCGAGCCG 60.578 66.667 30.66 25.72 37.91 5.52
170 171 4.778415 TCTTGACGCTCGAGCCGC 62.778 66.667 30.66 22.24 37.91 6.53
178 179 4.749310 CTCGAGCCGCCTGCACTT 62.749 66.667 0.00 0.00 44.83 3.16
179 180 4.742201 TCGAGCCGCCTGCACTTC 62.742 66.667 0.00 0.00 44.83 3.01
180 181 4.749310 CGAGCCGCCTGCACTTCT 62.749 66.667 0.00 0.00 44.83 2.85
181 182 2.359230 GAGCCGCCTGCACTTCTT 60.359 61.111 0.00 0.00 44.83 2.52
182 183 1.968540 GAGCCGCCTGCACTTCTTT 60.969 57.895 0.00 0.00 44.83 2.52
183 184 1.518903 GAGCCGCCTGCACTTCTTTT 61.519 55.000 0.00 0.00 44.83 2.27
184 185 1.081175 GCCGCCTGCACTTCTTTTC 60.081 57.895 0.00 0.00 40.77 2.29
185 186 1.518903 GCCGCCTGCACTTCTTTTCT 61.519 55.000 0.00 0.00 40.77 2.52
186 187 0.519077 CCGCCTGCACTTCTTTTCTC 59.481 55.000 0.00 0.00 0.00 2.87
187 188 1.229428 CGCCTGCACTTCTTTTCTCA 58.771 50.000 0.00 0.00 0.00 3.27
188 189 1.196354 CGCCTGCACTTCTTTTCTCAG 59.804 52.381 0.00 0.00 0.00 3.35
189 190 2.225467 GCCTGCACTTCTTTTCTCAGT 58.775 47.619 0.00 0.00 0.00 3.41
190 191 2.620585 GCCTGCACTTCTTTTCTCAGTT 59.379 45.455 0.00 0.00 0.00 3.16
191 192 3.304324 GCCTGCACTTCTTTTCTCAGTTC 60.304 47.826 0.00 0.00 0.00 3.01
192 193 3.879295 CCTGCACTTCTTTTCTCAGTTCA 59.121 43.478 0.00 0.00 0.00 3.18
193 194 4.336433 CCTGCACTTCTTTTCTCAGTTCAA 59.664 41.667 0.00 0.00 0.00 2.69
194 195 5.163622 CCTGCACTTCTTTTCTCAGTTCAAA 60.164 40.000 0.00 0.00 0.00 2.69
195 196 6.266168 TGCACTTCTTTTCTCAGTTCAAAA 57.734 33.333 0.00 0.00 0.00 2.44
196 197 6.686630 TGCACTTCTTTTCTCAGTTCAAAAA 58.313 32.000 0.00 0.00 0.00 1.94
197 198 7.322664 TGCACTTCTTTTCTCAGTTCAAAAAT 58.677 30.769 0.00 0.00 0.00 1.82
198 199 7.818930 TGCACTTCTTTTCTCAGTTCAAAAATT 59.181 29.630 0.00 0.00 0.00 1.82
199 200 8.323854 GCACTTCTTTTCTCAGTTCAAAAATTC 58.676 33.333 0.00 0.00 0.00 2.17
200 201 8.811378 CACTTCTTTTCTCAGTTCAAAAATTCC 58.189 33.333 0.00 0.00 0.00 3.01
201 202 7.981789 ACTTCTTTTCTCAGTTCAAAAATTCCC 59.018 33.333 0.00 0.00 0.00 3.97
202 203 7.416964 TCTTTTCTCAGTTCAAAAATTCCCA 57.583 32.000 0.00 0.00 0.00 4.37
203 204 7.846066 TCTTTTCTCAGTTCAAAAATTCCCAA 58.154 30.769 0.00 0.00 0.00 4.12
204 205 8.317679 TCTTTTCTCAGTTCAAAAATTCCCAAA 58.682 29.630 0.00 0.00 0.00 3.28
205 206 8.491331 TTTTCTCAGTTCAAAAATTCCCAAAG 57.509 30.769 0.00 0.00 0.00 2.77
206 207 5.600696 TCTCAGTTCAAAAATTCCCAAAGC 58.399 37.500 0.00 0.00 0.00 3.51
207 208 5.128499 TCTCAGTTCAAAAATTCCCAAAGCA 59.872 36.000 0.00 0.00 0.00 3.91
208 209 5.927819 TCAGTTCAAAAATTCCCAAAGCAT 58.072 33.333 0.00 0.00 0.00 3.79
209 210 5.990996 TCAGTTCAAAAATTCCCAAAGCATC 59.009 36.000 0.00 0.00 0.00 3.91
210 211 5.759273 CAGTTCAAAAATTCCCAAAGCATCA 59.241 36.000 0.00 0.00 0.00 3.07
211 212 5.993441 AGTTCAAAAATTCCCAAAGCATCAG 59.007 36.000 0.00 0.00 0.00 2.90
212 213 5.549742 TCAAAAATTCCCAAAGCATCAGT 57.450 34.783 0.00 0.00 0.00 3.41
213 214 6.662865 TCAAAAATTCCCAAAGCATCAGTA 57.337 33.333 0.00 0.00 0.00 2.74
214 215 6.454795 TCAAAAATTCCCAAAGCATCAGTAC 58.545 36.000 0.00 0.00 0.00 2.73
215 216 6.267471 TCAAAAATTCCCAAAGCATCAGTACT 59.733 34.615 0.00 0.00 0.00 2.73
216 217 7.450014 TCAAAAATTCCCAAAGCATCAGTACTA 59.550 33.333 0.00 0.00 0.00 1.82
217 218 7.961326 AAAATTCCCAAAGCATCAGTACTAT 57.039 32.000 0.00 0.00 0.00 2.12
218 219 6.949352 AATTCCCAAAGCATCAGTACTATG 57.051 37.500 0.00 1.71 0.00 2.23
219 220 5.435686 TTCCCAAAGCATCAGTACTATGT 57.564 39.130 0.00 0.00 0.00 2.29
220 221 6.553953 TTCCCAAAGCATCAGTACTATGTA 57.446 37.500 0.00 0.00 0.00 2.29
221 222 6.747414 TCCCAAAGCATCAGTACTATGTAT 57.253 37.500 0.00 0.00 0.00 2.29
222 223 6.759272 TCCCAAAGCATCAGTACTATGTATC 58.241 40.000 0.00 0.00 0.00 2.24
223 224 6.326323 TCCCAAAGCATCAGTACTATGTATCA 59.674 38.462 0.00 0.00 0.00 2.15
224 225 6.648310 CCCAAAGCATCAGTACTATGTATCAG 59.352 42.308 0.00 0.00 0.00 2.90
225 226 6.648310 CCAAAGCATCAGTACTATGTATCAGG 59.352 42.308 0.00 0.00 0.00 3.86
226 227 7.436933 CAAAGCATCAGTACTATGTATCAGGA 58.563 38.462 0.00 0.00 0.00 3.86
227 228 7.789202 AAGCATCAGTACTATGTATCAGGAT 57.211 36.000 0.00 0.00 0.00 3.24
228 229 8.885693 AAGCATCAGTACTATGTATCAGGATA 57.114 34.615 0.00 0.00 0.00 2.59
229 230 8.287439 AGCATCAGTACTATGTATCAGGATAC 57.713 38.462 11.59 11.59 42.95 2.24
241 242 7.432148 TGTATCAGGATACACCATGTTAGTT 57.568 36.000 16.10 0.00 46.11 2.24
242 243 7.497595 TGTATCAGGATACACCATGTTAGTTC 58.502 38.462 16.10 0.00 46.11 3.01
243 244 6.814954 ATCAGGATACACCATGTTAGTTCT 57.185 37.500 0.00 0.00 42.04 3.01
244 245 5.977635 TCAGGATACACCATGTTAGTTCTG 58.022 41.667 0.00 0.00 42.04 3.02
245 246 4.572389 CAGGATACACCATGTTAGTTCTGC 59.428 45.833 0.00 0.00 42.04 4.26
246 247 4.225042 AGGATACACCATGTTAGTTCTGCA 59.775 41.667 0.00 0.00 42.04 4.41
247 248 4.572389 GGATACACCATGTTAGTTCTGCAG 59.428 45.833 7.63 7.63 38.79 4.41
248 249 3.769739 ACACCATGTTAGTTCTGCAGA 57.230 42.857 13.74 13.74 0.00 4.26
249 250 4.292186 ACACCATGTTAGTTCTGCAGAT 57.708 40.909 19.04 6.10 0.00 2.90
250 251 4.655963 ACACCATGTTAGTTCTGCAGATT 58.344 39.130 19.04 11.72 0.00 2.40
251 252 5.072741 ACACCATGTTAGTTCTGCAGATTT 58.927 37.500 19.04 11.34 0.00 2.17
252 253 5.182001 ACACCATGTTAGTTCTGCAGATTTC 59.818 40.000 19.04 11.25 0.00 2.17
253 254 4.702131 ACCATGTTAGTTCTGCAGATTTCC 59.298 41.667 19.04 6.18 0.00 3.13
254 255 4.701651 CCATGTTAGTTCTGCAGATTTCCA 59.298 41.667 19.04 11.22 0.00 3.53
255 256 5.359009 CCATGTTAGTTCTGCAGATTTCCAT 59.641 40.000 19.04 12.96 0.00 3.41
256 257 6.127535 CCATGTTAGTTCTGCAGATTTCCATT 60.128 38.462 19.04 1.07 0.00 3.16
257 258 7.067372 CCATGTTAGTTCTGCAGATTTCCATTA 59.933 37.037 19.04 0.00 0.00 1.90
258 259 8.627403 CATGTTAGTTCTGCAGATTTCCATTAT 58.373 33.333 19.04 3.38 0.00 1.28
259 260 7.988737 TGTTAGTTCTGCAGATTTCCATTATG 58.011 34.615 19.04 0.00 0.00 1.90
260 261 5.511234 AGTTCTGCAGATTTCCATTATGC 57.489 39.130 19.04 0.00 37.40 3.14
261 262 5.198965 AGTTCTGCAGATTTCCATTATGCT 58.801 37.500 19.04 0.00 37.76 3.79
262 263 5.655532 AGTTCTGCAGATTTCCATTATGCTT 59.344 36.000 19.04 0.00 37.76 3.91
263 264 5.509716 TCTGCAGATTTCCATTATGCTTG 57.490 39.130 13.74 0.00 37.76 4.01
264 265 4.951715 TCTGCAGATTTCCATTATGCTTGT 59.048 37.500 13.74 0.00 37.76 3.16
265 266 6.121590 TCTGCAGATTTCCATTATGCTTGTA 58.878 36.000 13.74 0.00 37.76 2.41
266 267 6.774170 TCTGCAGATTTCCATTATGCTTGTAT 59.226 34.615 13.74 0.00 37.76 2.29
267 268 6.741109 TGCAGATTTCCATTATGCTTGTATG 58.259 36.000 0.00 0.00 37.76 2.39
268 269 6.321945 TGCAGATTTCCATTATGCTTGTATGT 59.678 34.615 0.00 0.00 37.76 2.29
269 270 6.860023 GCAGATTTCCATTATGCTTGTATGTC 59.140 38.462 0.00 0.00 34.10 3.06
270 271 7.365741 CAGATTTCCATTATGCTTGTATGTCC 58.634 38.462 0.00 0.00 0.00 4.02
271 272 7.230108 CAGATTTCCATTATGCTTGTATGTCCT 59.770 37.037 0.00 0.00 0.00 3.85
272 273 6.942532 TTTCCATTATGCTTGTATGTCCTC 57.057 37.500 0.00 0.00 0.00 3.71
273 274 4.973168 TCCATTATGCTTGTATGTCCTCC 58.027 43.478 0.00 0.00 0.00 4.30
274 275 4.660303 TCCATTATGCTTGTATGTCCTCCT 59.340 41.667 0.00 0.00 0.00 3.69
275 276 4.758674 CCATTATGCTTGTATGTCCTCCTG 59.241 45.833 0.00 0.00 0.00 3.86
276 277 5.371526 CATTATGCTTGTATGTCCTCCTGT 58.628 41.667 0.00 0.00 0.00 4.00
277 278 6.464322 CCATTATGCTTGTATGTCCTCCTGTA 60.464 42.308 0.00 0.00 0.00 2.74
278 279 3.887621 TGCTTGTATGTCCTCCTGTAC 57.112 47.619 0.00 0.00 0.00 2.90
279 280 3.441101 TGCTTGTATGTCCTCCTGTACT 58.559 45.455 0.00 0.00 0.00 2.73
280 281 3.195610 TGCTTGTATGTCCTCCTGTACTG 59.804 47.826 0.00 0.00 0.00 2.74
281 282 3.786635 CTTGTATGTCCTCCTGTACTGC 58.213 50.000 0.00 0.00 0.00 4.40
282 283 2.815158 TGTATGTCCTCCTGTACTGCA 58.185 47.619 0.00 0.00 0.00 4.41
283 284 3.169908 TGTATGTCCTCCTGTACTGCAA 58.830 45.455 0.00 0.00 0.00 4.08
284 285 3.195610 TGTATGTCCTCCTGTACTGCAAG 59.804 47.826 0.00 0.00 42.29 4.01
308 309 8.190888 AGTTCATTAGCTGAAGTTTAGAATCG 57.809 34.615 0.00 0.00 43.58 3.34
309 310 8.035394 AGTTCATTAGCTGAAGTTTAGAATCGA 58.965 33.333 0.00 0.00 43.58 3.59
310 311 7.993821 TCATTAGCTGAAGTTTAGAATCGAG 57.006 36.000 0.00 0.00 0.00 4.04
311 312 7.772166 TCATTAGCTGAAGTTTAGAATCGAGA 58.228 34.615 0.00 0.00 0.00 4.04
312 313 7.918033 TCATTAGCTGAAGTTTAGAATCGAGAG 59.082 37.037 0.00 0.00 0.00 3.20
314 315 5.646606 AGCTGAAGTTTAGAATCGAGAGAC 58.353 41.667 0.00 0.00 46.97 3.36
315 316 5.417580 AGCTGAAGTTTAGAATCGAGAGACT 59.582 40.000 0.00 0.00 46.97 3.24
316 317 5.514914 GCTGAAGTTTAGAATCGAGAGACTG 59.485 44.000 0.00 0.00 46.97 3.51
317 318 5.403246 TGAAGTTTAGAATCGAGAGACTGC 58.597 41.667 0.00 0.00 46.97 4.40
318 319 5.048013 TGAAGTTTAGAATCGAGAGACTGCA 60.048 40.000 0.00 0.00 46.97 4.41
319 320 5.392767 AGTTTAGAATCGAGAGACTGCAA 57.607 39.130 0.00 0.00 46.97 4.08
320 321 5.406649 AGTTTAGAATCGAGAGACTGCAAG 58.593 41.667 0.00 0.00 46.97 4.01
340 341 9.985318 CTGCAAGTTCATTAAAATTGAAAAACA 57.015 25.926 2.50 0.00 43.84 2.83
363 364 9.520515 AACATTCAACTAAATTCCTCATGTACT 57.479 29.630 0.00 0.00 0.00 2.73
364 365 8.950210 ACATTCAACTAAATTCCTCATGTACTG 58.050 33.333 0.00 0.00 0.00 2.74
365 366 8.950210 CATTCAACTAAATTCCTCATGTACTGT 58.050 33.333 0.00 0.00 0.00 3.55
376 377 9.998106 ATTCCTCATGTACTGTATTATTACCAC 57.002 33.333 0.00 0.00 0.00 4.16
377 378 8.777578 TCCTCATGTACTGTATTATTACCACT 57.222 34.615 0.00 0.00 0.00 4.00
378 379 8.638873 TCCTCATGTACTGTATTATTACCACTG 58.361 37.037 0.00 0.00 0.00 3.66
379 380 8.421784 CCTCATGTACTGTATTATTACCACTGT 58.578 37.037 0.00 0.00 0.00 3.55
380 381 9.817809 CTCATGTACTGTATTATTACCACTGTT 57.182 33.333 0.00 0.00 0.00 3.16
381 382 9.811995 TCATGTACTGTATTATTACCACTGTTC 57.188 33.333 0.00 0.00 0.00 3.18
493 494 6.114767 TGCATCTTGTCATAGTATTGCTGAA 58.885 36.000 3.20 0.00 0.00 3.02
503 504 9.664332 GTCATAGTATTGCTGAATCAAGGATAT 57.336 33.333 0.00 0.00 0.00 1.63
512 513 5.472478 GCTGAATCAAGGATATCATTGCTGA 59.528 40.000 22.22 8.70 37.53 4.26
530 534 3.990469 GCTGATTGACATATACCAGGTCG 59.010 47.826 0.00 0.00 40.91 4.79
643 658 1.336131 TCTGCAGTCTCAGTGCTTCT 58.664 50.000 14.67 0.00 44.61 2.85
904 923 1.314534 CCGCCCTTGCATGAATGACA 61.315 55.000 0.00 0.00 37.32 3.58
1140 1177 3.458163 CTCCGGCCTGGTCGCTAA 61.458 66.667 16.65 1.64 39.52 3.09
1258 1305 1.521450 GCATAGCGCCATGGCATTCT 61.521 55.000 34.93 27.50 42.06 2.40
1297 1348 2.237143 CAAGCTCACATTGGAGGTCCTA 59.763 50.000 0.00 0.00 44.32 2.94
1361 1412 4.081420 CACAGTACACCTTCTTCTATGGCT 60.081 45.833 0.00 0.00 0.00 4.75
1375 1426 0.401738 ATGGCTTGCAGTACACCACT 59.598 50.000 0.00 0.00 38.32 4.00
1376 1427 0.182537 TGGCTTGCAGTACACCACTT 59.817 50.000 0.00 0.00 34.26 3.16
1473 1524 2.157738 GCTGAAGTTGAAGAGCATGGT 58.842 47.619 0.00 0.00 0.00 3.55
1667 1736 0.102844 TTTGCTGTTCAACTGCCTGC 59.897 50.000 16.04 0.88 41.58 4.85
1886 1955 6.203808 AGGCCGTACAAATTTCTTATTTCC 57.796 37.500 0.00 0.00 0.00 3.13
1936 2005 6.486253 ACTGTAAGCTCACATGTTATTGTG 57.514 37.500 0.00 0.00 42.84 3.33
2218 2290 7.451877 GGATCAGTTCTATAGGTCCATGTCTTA 59.548 40.741 0.00 0.00 0.00 2.10
2311 2383 4.520111 TCCCATCTGTGAAAACATGTTCAG 59.480 41.667 12.39 14.28 38.17 3.02
2312 2384 4.279169 CCCATCTGTGAAAACATGTTCAGT 59.721 41.667 12.39 0.00 38.17 3.41
2313 2385 5.473162 CCCATCTGTGAAAACATGTTCAGTA 59.527 40.000 12.39 5.76 38.17 2.74
2314 2386 6.373779 CCATCTGTGAAAACATGTTCAGTAC 58.626 40.000 12.39 9.47 38.17 2.73
2315 2387 6.017192 CCATCTGTGAAAACATGTTCAGTACA 60.017 38.462 12.39 13.19 38.17 2.90
2316 2388 6.993786 TCTGTGAAAACATGTTCAGTACAA 57.006 33.333 12.39 0.00 40.89 2.41
2317 2389 7.384439 TCTGTGAAAACATGTTCAGTACAAA 57.616 32.000 12.39 0.00 40.89 2.83
2318 2390 7.471721 TCTGTGAAAACATGTTCAGTACAAAG 58.528 34.615 12.39 11.55 40.89 2.77
2319 2391 7.120579 TCTGTGAAAACATGTTCAGTACAAAGT 59.879 33.333 12.39 0.00 40.89 2.66
2360 2432 8.571336 AGATCATTTCAACTACTCTGTTTTTGG 58.429 33.333 0.00 0.00 0.00 3.28
2363 2435 8.188139 TCATTTCAACTACTCTGTTTTTGGAAC 58.812 33.333 0.00 0.00 0.00 3.62
2493 2568 0.665972 CAACGGTTGCGAATTTGGGG 60.666 55.000 8.09 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.636789 TGGATTCATCAAAGATGTCAAGATTAT 57.363 29.630 6.86 0.00 0.00 1.28
2 3 9.117183 CTGGATTCATCAAAGATGTCAAGATTA 57.883 33.333 6.86 0.00 0.00 1.75
3 4 7.416438 GCTGGATTCATCAAAGATGTCAAGATT 60.416 37.037 6.86 0.00 0.00 2.40
4 5 6.039493 GCTGGATTCATCAAAGATGTCAAGAT 59.961 38.462 6.86 0.00 0.00 2.40
5 6 5.356190 GCTGGATTCATCAAAGATGTCAAGA 59.644 40.000 6.86 0.00 0.00 3.02
6 7 5.450137 GGCTGGATTCATCAAAGATGTCAAG 60.450 44.000 6.86 3.12 0.00 3.02
7 8 4.400251 GGCTGGATTCATCAAAGATGTCAA 59.600 41.667 6.86 0.00 0.00 3.18
8 9 3.949754 GGCTGGATTCATCAAAGATGTCA 59.050 43.478 6.86 2.40 0.00 3.58
9 10 3.317430 GGGCTGGATTCATCAAAGATGTC 59.683 47.826 6.86 0.00 0.00 3.06
10 11 3.294214 GGGCTGGATTCATCAAAGATGT 58.706 45.455 6.86 0.00 0.00 3.06
11 12 2.292569 CGGGCTGGATTCATCAAAGATG 59.707 50.000 0.62 0.62 0.00 2.90
12 13 2.173356 TCGGGCTGGATTCATCAAAGAT 59.827 45.455 0.00 0.00 0.00 2.40
13 14 1.559219 TCGGGCTGGATTCATCAAAGA 59.441 47.619 0.00 0.00 0.00 2.52
14 15 2.042686 TCGGGCTGGATTCATCAAAG 57.957 50.000 0.00 0.00 0.00 2.77
15 16 2.091541 GTTCGGGCTGGATTCATCAAA 58.908 47.619 0.00 0.00 0.00 2.69
16 17 1.281867 AGTTCGGGCTGGATTCATCAA 59.718 47.619 0.00 0.00 0.00 2.57
17 18 0.911769 AGTTCGGGCTGGATTCATCA 59.088 50.000 0.00 0.00 0.00 3.07
18 19 1.134401 TCAGTTCGGGCTGGATTCATC 60.134 52.381 7.17 0.00 37.12 2.92
19 20 0.911769 TCAGTTCGGGCTGGATTCAT 59.088 50.000 7.17 0.00 37.12 2.57
20 21 0.690192 TTCAGTTCGGGCTGGATTCA 59.310 50.000 7.17 0.00 37.12 2.57
21 22 1.373570 CTTCAGTTCGGGCTGGATTC 58.626 55.000 7.17 0.00 37.12 2.52
22 23 0.678048 GCTTCAGTTCGGGCTGGATT 60.678 55.000 7.17 0.00 37.12 3.01
23 24 1.078143 GCTTCAGTTCGGGCTGGAT 60.078 57.895 7.17 0.00 37.12 3.41
24 25 1.841302 ATGCTTCAGTTCGGGCTGGA 61.841 55.000 7.17 0.00 37.12 3.86
25 26 1.377725 ATGCTTCAGTTCGGGCTGG 60.378 57.895 7.17 0.00 37.12 4.85
26 27 0.957395 ACATGCTTCAGTTCGGGCTG 60.957 55.000 0.00 1.54 37.81 4.85
27 28 0.674895 GACATGCTTCAGTTCGGGCT 60.675 55.000 0.00 0.00 0.00 5.19
28 29 1.796796 GACATGCTTCAGTTCGGGC 59.203 57.895 0.00 0.00 0.00 6.13
29 30 1.361668 CCGACATGCTTCAGTTCGGG 61.362 60.000 10.04 0.00 35.86 5.14
30 31 1.970917 GCCGACATGCTTCAGTTCGG 61.971 60.000 12.83 12.83 41.58 4.30
31 32 1.291184 TGCCGACATGCTTCAGTTCG 61.291 55.000 0.00 0.00 0.00 3.95
32 33 0.874390 TTGCCGACATGCTTCAGTTC 59.126 50.000 0.00 0.00 0.00 3.01
33 34 0.877071 CTTGCCGACATGCTTCAGTT 59.123 50.000 0.00 0.00 0.00 3.16
34 35 1.580845 GCTTGCCGACATGCTTCAGT 61.581 55.000 2.26 0.00 42.22 3.41
35 36 1.136147 GCTTGCCGACATGCTTCAG 59.864 57.895 2.26 0.00 42.22 3.02
36 37 2.334946 GGCTTGCCGACATGCTTCA 61.335 57.895 9.35 0.00 44.29 3.02
37 38 2.486966 GGCTTGCCGACATGCTTC 59.513 61.111 9.35 0.00 44.29 3.86
38 39 3.434319 CGGCTTGCCGACATGCTT 61.434 61.111 27.61 0.00 44.29 3.91
48 49 3.286915 CTTTTGAGGCCCGGCTTGC 62.287 63.158 9.86 0.00 0.00 4.01
49 50 2.639327 CCTTTTGAGGCCCGGCTTG 61.639 63.158 9.86 0.00 0.00 4.01
50 51 2.283173 CCTTTTGAGGCCCGGCTT 60.283 61.111 9.86 0.00 0.00 4.35
58 59 0.323816 GGGAGAAGGGCCTTTTGAGG 60.324 60.000 21.92 0.00 0.00 3.86
59 60 0.678048 CGGGAGAAGGGCCTTTTGAG 60.678 60.000 21.92 7.71 0.00 3.02
60 61 1.378762 CGGGAGAAGGGCCTTTTGA 59.621 57.895 21.92 0.00 0.00 2.69
61 62 2.343426 GCGGGAGAAGGGCCTTTTG 61.343 63.158 21.92 9.72 0.00 2.44
62 63 1.205460 TAGCGGGAGAAGGGCCTTTT 61.205 55.000 21.92 15.76 0.00 2.27
63 64 1.615424 TAGCGGGAGAAGGGCCTTT 60.615 57.895 21.92 10.43 0.00 3.11
64 65 2.040606 TAGCGGGAGAAGGGCCTT 59.959 61.111 21.09 21.09 0.00 4.35
65 66 2.764547 GTAGCGGGAGAAGGGCCT 60.765 66.667 0.00 0.00 0.00 5.19
66 67 2.764547 AGTAGCGGGAGAAGGGCC 60.765 66.667 0.00 0.00 0.00 5.80
67 68 2.299503 GACAGTAGCGGGAGAAGGGC 62.300 65.000 0.00 0.00 0.00 5.19
68 69 0.684805 AGACAGTAGCGGGAGAAGGG 60.685 60.000 0.00 0.00 0.00 3.95
69 70 0.741915 GAGACAGTAGCGGGAGAAGG 59.258 60.000 0.00 0.00 0.00 3.46
70 71 0.378962 CGAGACAGTAGCGGGAGAAG 59.621 60.000 0.00 0.00 0.00 2.85
71 72 0.035725 TCGAGACAGTAGCGGGAGAA 60.036 55.000 0.00 0.00 0.00 2.87
72 73 0.180642 ATCGAGACAGTAGCGGGAGA 59.819 55.000 0.00 0.00 0.00 3.71
73 74 0.589223 GATCGAGACAGTAGCGGGAG 59.411 60.000 0.00 0.00 0.00 4.30
74 75 0.180642 AGATCGAGACAGTAGCGGGA 59.819 55.000 0.00 0.00 0.00 5.14
75 76 1.025812 AAGATCGAGACAGTAGCGGG 58.974 55.000 0.00 0.00 0.00 6.13
76 77 1.671328 TCAAGATCGAGACAGTAGCGG 59.329 52.381 0.00 0.00 0.00 5.52
77 78 3.102276 GTTCAAGATCGAGACAGTAGCG 58.898 50.000 0.00 0.00 0.00 4.26
78 79 4.101942 CAGTTCAAGATCGAGACAGTAGC 58.898 47.826 0.00 0.00 0.00 3.58
79 80 5.553290 TCAGTTCAAGATCGAGACAGTAG 57.447 43.478 0.00 0.00 0.00 2.57
80 81 5.416013 ACATCAGTTCAAGATCGAGACAGTA 59.584 40.000 0.00 0.00 0.00 2.74
81 82 4.219507 ACATCAGTTCAAGATCGAGACAGT 59.780 41.667 0.00 0.00 0.00 3.55
82 83 4.742417 ACATCAGTTCAAGATCGAGACAG 58.258 43.478 0.00 0.00 0.00 3.51
83 84 4.790765 ACATCAGTTCAAGATCGAGACA 57.209 40.909 0.00 0.00 0.00 3.41
84 85 4.926238 ACAACATCAGTTCAAGATCGAGAC 59.074 41.667 0.00 0.00 35.28 3.36
85 86 5.139435 ACAACATCAGTTCAAGATCGAGA 57.861 39.130 0.00 0.00 35.28 4.04
86 87 5.178252 ACAACAACATCAGTTCAAGATCGAG 59.822 40.000 0.00 0.00 35.28 4.04
87 88 5.056480 ACAACAACATCAGTTCAAGATCGA 58.944 37.500 0.00 0.00 35.28 3.59
88 89 5.050159 TGACAACAACATCAGTTCAAGATCG 60.050 40.000 0.00 0.00 35.28 3.69
89 90 6.304356 TGACAACAACATCAGTTCAAGATC 57.696 37.500 0.00 0.00 35.28 2.75
90 91 6.713903 AGATGACAACAACATCAGTTCAAGAT 59.286 34.615 0.00 0.00 44.29 2.40
91 92 6.017687 CAGATGACAACAACATCAGTTCAAGA 60.018 38.462 0.00 0.00 44.29 3.02
92 93 6.140786 CAGATGACAACAACATCAGTTCAAG 58.859 40.000 0.00 0.00 44.29 3.02
93 94 5.589855 ACAGATGACAACAACATCAGTTCAA 59.410 36.000 0.00 0.00 44.29 2.69
94 95 5.125356 ACAGATGACAACAACATCAGTTCA 58.875 37.500 0.00 0.00 44.29 3.18
95 96 5.468072 AGACAGATGACAACAACATCAGTTC 59.532 40.000 0.00 0.00 41.83 3.01
96 97 5.371526 AGACAGATGACAACAACATCAGTT 58.628 37.500 0.00 0.00 41.83 3.16
97 98 4.965814 AGACAGATGACAACAACATCAGT 58.034 39.130 0.00 0.00 43.45 3.41
98 99 5.349817 GGTAGACAGATGACAACAACATCAG 59.650 44.000 0.00 0.00 44.29 2.90
99 100 5.012046 AGGTAGACAGATGACAACAACATCA 59.988 40.000 0.00 0.00 44.29 3.07
100 101 5.482908 AGGTAGACAGATGACAACAACATC 58.517 41.667 0.00 0.00 42.81 3.06
101 102 5.482908 GAGGTAGACAGATGACAACAACAT 58.517 41.667 0.00 0.00 0.00 2.71
102 103 4.262463 GGAGGTAGACAGATGACAACAACA 60.262 45.833 0.00 0.00 0.00 3.33
103 104 4.021016 AGGAGGTAGACAGATGACAACAAC 60.021 45.833 0.00 0.00 0.00 3.32
104 105 4.160329 AGGAGGTAGACAGATGACAACAA 58.840 43.478 0.00 0.00 0.00 2.83
105 106 3.779444 AGGAGGTAGACAGATGACAACA 58.221 45.455 0.00 0.00 0.00 3.33
106 107 4.382147 GGAAGGAGGTAGACAGATGACAAC 60.382 50.000 0.00 0.00 0.00 3.32
107 108 3.769844 GGAAGGAGGTAGACAGATGACAA 59.230 47.826 0.00 0.00 0.00 3.18
108 109 3.011821 AGGAAGGAGGTAGACAGATGACA 59.988 47.826 0.00 0.00 0.00 3.58
109 110 3.637769 AGGAAGGAGGTAGACAGATGAC 58.362 50.000 0.00 0.00 0.00 3.06
110 111 4.026744 CAAGGAAGGAGGTAGACAGATGA 58.973 47.826 0.00 0.00 0.00 2.92
111 112 3.133721 CCAAGGAAGGAGGTAGACAGATG 59.866 52.174 0.00 0.00 0.00 2.90
112 113 3.246167 ACCAAGGAAGGAGGTAGACAGAT 60.246 47.826 0.00 0.00 32.92 2.90
113 114 2.111972 ACCAAGGAAGGAGGTAGACAGA 59.888 50.000 0.00 0.00 32.92 3.41
114 115 2.234908 CACCAAGGAAGGAGGTAGACAG 59.765 54.545 0.00 0.00 33.49 3.51
115 116 2.158219 TCACCAAGGAAGGAGGTAGACA 60.158 50.000 0.00 0.00 33.49 3.41
116 117 2.498078 CTCACCAAGGAAGGAGGTAGAC 59.502 54.545 0.00 0.00 33.49 2.59
117 118 2.821437 CTCACCAAGGAAGGAGGTAGA 58.179 52.381 0.00 0.00 33.49 2.59
118 119 1.208293 GCTCACCAAGGAAGGAGGTAG 59.792 57.143 0.00 0.00 33.49 3.18
119 120 1.276622 GCTCACCAAGGAAGGAGGTA 58.723 55.000 0.00 0.00 33.49 3.08
120 121 1.492993 GGCTCACCAAGGAAGGAGGT 61.493 60.000 0.00 0.00 35.65 3.85
121 122 1.301293 GGCTCACCAAGGAAGGAGG 59.699 63.158 0.00 0.00 35.26 4.30
122 123 1.301293 GGGCTCACCAAGGAAGGAG 59.699 63.158 0.00 0.00 39.85 3.69
123 124 3.495729 GGGCTCACCAAGGAAGGA 58.504 61.111 0.00 0.00 39.85 3.36
132 133 1.457346 CAGAAGAACATGGGCTCACC 58.543 55.000 0.00 0.00 40.81 4.02
133 134 0.807496 GCAGAAGAACATGGGCTCAC 59.193 55.000 0.00 0.00 0.00 3.51
134 135 0.694771 AGCAGAAGAACATGGGCTCA 59.305 50.000 0.00 0.00 0.00 4.26
135 136 1.065564 AGAGCAGAAGAACATGGGCTC 60.066 52.381 0.00 0.00 46.01 4.70
136 137 0.990374 AGAGCAGAAGAACATGGGCT 59.010 50.000 0.00 0.00 0.00 5.19
137 138 1.471684 CAAGAGCAGAAGAACATGGGC 59.528 52.381 0.00 0.00 0.00 5.36
138 139 2.746362 GTCAAGAGCAGAAGAACATGGG 59.254 50.000 0.00 0.00 0.00 4.00
139 140 2.414481 CGTCAAGAGCAGAAGAACATGG 59.586 50.000 0.00 0.00 0.00 3.66
140 141 2.159734 GCGTCAAGAGCAGAAGAACATG 60.160 50.000 0.00 0.00 34.19 3.21
141 142 2.072298 GCGTCAAGAGCAGAAGAACAT 58.928 47.619 0.00 0.00 34.19 2.71
142 143 1.069204 AGCGTCAAGAGCAGAAGAACA 59.931 47.619 0.00 0.00 37.01 3.18
143 144 1.724082 GAGCGTCAAGAGCAGAAGAAC 59.276 52.381 0.00 0.00 37.01 3.01
144 145 1.667177 CGAGCGTCAAGAGCAGAAGAA 60.667 52.381 0.00 0.00 37.01 2.52
145 146 0.109551 CGAGCGTCAAGAGCAGAAGA 60.110 55.000 0.00 0.00 37.01 2.87
146 147 0.109551 TCGAGCGTCAAGAGCAGAAG 60.110 55.000 0.00 0.00 37.01 2.85
147 148 0.109551 CTCGAGCGTCAAGAGCAGAA 60.110 55.000 0.00 0.00 37.01 3.02
148 149 1.503994 CTCGAGCGTCAAGAGCAGA 59.496 57.895 0.00 0.00 37.01 4.26
149 150 4.069837 CTCGAGCGTCAAGAGCAG 57.930 61.111 0.00 0.00 37.01 4.24
152 153 2.578178 CGGCTCGAGCGTCAAGAG 60.578 66.667 29.81 11.52 43.26 2.85
153 154 4.778415 GCGGCTCGAGCGTCAAGA 62.778 66.667 29.81 0.00 43.26 3.02
161 162 4.749310 AAGTGCAGGCGGCTCGAG 62.749 66.667 9.32 8.45 45.15 4.04
162 163 4.742201 GAAGTGCAGGCGGCTCGA 62.742 66.667 9.32 0.00 45.15 4.04
163 164 4.749310 AGAAGTGCAGGCGGCTCG 62.749 66.667 9.32 6.27 45.15 5.03
164 165 1.518903 AAAAGAAGTGCAGGCGGCTC 61.519 55.000 9.32 7.43 45.15 4.70
165 166 1.518903 GAAAAGAAGTGCAGGCGGCT 61.519 55.000 5.25 5.25 45.15 5.52
166 167 1.081175 GAAAAGAAGTGCAGGCGGC 60.081 57.895 0.00 0.00 45.13 6.53
167 168 0.519077 GAGAAAAGAAGTGCAGGCGG 59.481 55.000 0.00 0.00 0.00 6.13
168 169 1.196354 CTGAGAAAAGAAGTGCAGGCG 59.804 52.381 0.00 0.00 0.00 5.52
169 170 2.225467 ACTGAGAAAAGAAGTGCAGGC 58.775 47.619 0.00 0.00 0.00 4.85
170 171 3.879295 TGAACTGAGAAAAGAAGTGCAGG 59.121 43.478 0.00 0.00 0.00 4.85
171 172 5.490139 TTGAACTGAGAAAAGAAGTGCAG 57.510 39.130 0.00 0.00 31.13 4.41
172 173 5.895636 TTTGAACTGAGAAAAGAAGTGCA 57.104 34.783 0.00 0.00 0.00 4.57
173 174 7.761651 ATTTTTGAACTGAGAAAAGAAGTGC 57.238 32.000 0.00 0.00 0.00 4.40
174 175 8.811378 GGAATTTTTGAACTGAGAAAAGAAGTG 58.189 33.333 0.00 0.00 0.00 3.16
175 176 7.981789 GGGAATTTTTGAACTGAGAAAAGAAGT 59.018 33.333 0.00 0.00 0.00 3.01
176 177 7.981225 TGGGAATTTTTGAACTGAGAAAAGAAG 59.019 33.333 0.00 0.00 0.00 2.85
177 178 7.846066 TGGGAATTTTTGAACTGAGAAAAGAA 58.154 30.769 0.00 0.00 0.00 2.52
178 179 7.416964 TGGGAATTTTTGAACTGAGAAAAGA 57.583 32.000 0.00 0.00 0.00 2.52
179 180 8.491331 TTTGGGAATTTTTGAACTGAGAAAAG 57.509 30.769 0.00 0.00 0.00 2.27
180 181 7.065683 GCTTTGGGAATTTTTGAACTGAGAAAA 59.934 33.333 0.00 0.00 0.00 2.29
181 182 6.538381 GCTTTGGGAATTTTTGAACTGAGAAA 59.462 34.615 0.00 0.00 0.00 2.52
182 183 6.048509 GCTTTGGGAATTTTTGAACTGAGAA 58.951 36.000 0.00 0.00 0.00 2.87
183 184 5.128499 TGCTTTGGGAATTTTTGAACTGAGA 59.872 36.000 0.00 0.00 0.00 3.27
184 185 5.358922 TGCTTTGGGAATTTTTGAACTGAG 58.641 37.500 0.00 0.00 0.00 3.35
185 186 5.350504 TGCTTTGGGAATTTTTGAACTGA 57.649 34.783 0.00 0.00 0.00 3.41
186 187 5.759273 TGATGCTTTGGGAATTTTTGAACTG 59.241 36.000 0.00 0.00 0.00 3.16
187 188 5.927819 TGATGCTTTGGGAATTTTTGAACT 58.072 33.333 0.00 0.00 0.00 3.01
188 189 5.759763 ACTGATGCTTTGGGAATTTTTGAAC 59.240 36.000 0.00 0.00 0.00 3.18
189 190 5.927819 ACTGATGCTTTGGGAATTTTTGAA 58.072 33.333 0.00 0.00 0.00 2.69
190 191 5.549742 ACTGATGCTTTGGGAATTTTTGA 57.450 34.783 0.00 0.00 0.00 2.69
191 192 6.458210 AGTACTGATGCTTTGGGAATTTTTG 58.542 36.000 0.00 0.00 0.00 2.44
192 193 6.670695 AGTACTGATGCTTTGGGAATTTTT 57.329 33.333 0.00 0.00 0.00 1.94
193 194 7.397192 ACATAGTACTGATGCTTTGGGAATTTT 59.603 33.333 5.39 0.00 0.00 1.82
194 195 6.891908 ACATAGTACTGATGCTTTGGGAATTT 59.108 34.615 5.39 0.00 0.00 1.82
195 196 6.426587 ACATAGTACTGATGCTTTGGGAATT 58.573 36.000 5.39 0.00 0.00 2.17
196 197 6.006275 ACATAGTACTGATGCTTTGGGAAT 57.994 37.500 5.39 0.00 0.00 3.01
197 198 5.435686 ACATAGTACTGATGCTTTGGGAA 57.564 39.130 5.39 0.00 0.00 3.97
198 199 6.326323 TGATACATAGTACTGATGCTTTGGGA 59.674 38.462 5.39 0.00 0.00 4.37
199 200 6.524734 TGATACATAGTACTGATGCTTTGGG 58.475 40.000 5.39 0.00 0.00 4.12
200 201 6.648310 CCTGATACATAGTACTGATGCTTTGG 59.352 42.308 5.39 0.00 0.00 3.28
201 202 7.436933 TCCTGATACATAGTACTGATGCTTTG 58.563 38.462 5.39 0.00 0.00 2.77
202 203 7.603180 TCCTGATACATAGTACTGATGCTTT 57.397 36.000 5.39 0.00 0.00 3.51
203 204 7.789202 ATCCTGATACATAGTACTGATGCTT 57.211 36.000 5.39 0.00 0.00 3.91
204 205 7.890655 TGTATCCTGATACATAGTACTGATGCT 59.109 37.037 14.41 0.00 46.11 3.79
205 206 8.056407 TGTATCCTGATACATAGTACTGATGC 57.944 38.462 14.41 0.75 46.11 3.91
218 219 7.653713 CAGAACTAACATGGTGTATCCTGATAC 59.346 40.741 9.81 9.81 42.95 2.24
219 220 7.686859 GCAGAACTAACATGGTGTATCCTGATA 60.687 40.741 0.00 0.00 37.07 2.15
220 221 6.586344 CAGAACTAACATGGTGTATCCTGAT 58.414 40.000 0.00 0.00 37.07 2.90
221 222 5.626809 GCAGAACTAACATGGTGTATCCTGA 60.627 44.000 0.00 0.00 37.07 3.86
222 223 4.572389 GCAGAACTAACATGGTGTATCCTG 59.428 45.833 0.00 0.00 37.07 3.86
223 224 4.225042 TGCAGAACTAACATGGTGTATCCT 59.775 41.667 0.00 0.00 37.07 3.24
224 225 4.513442 TGCAGAACTAACATGGTGTATCC 58.487 43.478 0.00 0.00 0.00 2.59
225 226 5.419542 TCTGCAGAACTAACATGGTGTATC 58.580 41.667 15.67 0.00 0.00 2.24
226 227 5.420725 TCTGCAGAACTAACATGGTGTAT 57.579 39.130 15.67 0.00 0.00 2.29
227 228 4.882842 TCTGCAGAACTAACATGGTGTA 57.117 40.909 15.67 0.00 0.00 2.90
228 229 3.769739 TCTGCAGAACTAACATGGTGT 57.230 42.857 15.67 0.00 0.00 4.16
229 230 5.392380 GGAAATCTGCAGAACTAACATGGTG 60.392 44.000 22.50 0.00 0.00 4.17
230 231 4.702131 GGAAATCTGCAGAACTAACATGGT 59.298 41.667 22.50 0.00 0.00 3.55
231 232 4.701651 TGGAAATCTGCAGAACTAACATGG 59.298 41.667 22.50 0.00 0.00 3.66
232 233 5.885230 TGGAAATCTGCAGAACTAACATG 57.115 39.130 22.50 0.00 0.00 3.21
233 234 8.627403 CATAATGGAAATCTGCAGAACTAACAT 58.373 33.333 22.50 17.51 0.00 2.71
234 235 7.415541 GCATAATGGAAATCTGCAGAACTAACA 60.416 37.037 22.50 16.05 33.13 2.41
235 236 6.914757 GCATAATGGAAATCTGCAGAACTAAC 59.085 38.462 22.50 10.83 33.13 2.34
236 237 6.830324 AGCATAATGGAAATCTGCAGAACTAA 59.170 34.615 22.50 6.22 35.32 2.24
237 238 6.359804 AGCATAATGGAAATCTGCAGAACTA 58.640 36.000 22.50 13.29 35.32 2.24
238 239 5.198965 AGCATAATGGAAATCTGCAGAACT 58.801 37.500 22.50 10.79 35.32 3.01
239 240 5.511234 AGCATAATGGAAATCTGCAGAAC 57.489 39.130 22.50 14.63 35.32 3.01
240 241 5.419788 ACAAGCATAATGGAAATCTGCAGAA 59.580 36.000 22.50 3.58 35.32 3.02
241 242 4.951715 ACAAGCATAATGGAAATCTGCAGA 59.048 37.500 20.79 20.79 35.32 4.26
242 243 5.258456 ACAAGCATAATGGAAATCTGCAG 57.742 39.130 7.63 7.63 35.32 4.41
243 244 6.321945 ACATACAAGCATAATGGAAATCTGCA 59.678 34.615 0.00 0.00 35.32 4.41
244 245 6.742109 ACATACAAGCATAATGGAAATCTGC 58.258 36.000 0.00 0.00 0.00 4.26
245 246 7.230108 AGGACATACAAGCATAATGGAAATCTG 59.770 37.037 0.00 0.00 0.00 2.90
246 247 7.293073 AGGACATACAAGCATAATGGAAATCT 58.707 34.615 0.00 0.00 0.00 2.40
247 248 7.308830 GGAGGACATACAAGCATAATGGAAATC 60.309 40.741 0.00 0.00 0.00 2.17
248 249 6.491403 GGAGGACATACAAGCATAATGGAAAT 59.509 38.462 0.00 0.00 0.00 2.17
249 250 5.827797 GGAGGACATACAAGCATAATGGAAA 59.172 40.000 0.00 0.00 0.00 3.13
250 251 5.132648 AGGAGGACATACAAGCATAATGGAA 59.867 40.000 0.00 0.00 0.00 3.53
251 252 4.660303 AGGAGGACATACAAGCATAATGGA 59.340 41.667 0.00 0.00 0.00 3.41
252 253 4.758674 CAGGAGGACATACAAGCATAATGG 59.241 45.833 0.00 0.00 0.00 3.16
253 254 5.371526 ACAGGAGGACATACAAGCATAATG 58.628 41.667 0.00 0.00 0.00 1.90
254 255 5.636903 ACAGGAGGACATACAAGCATAAT 57.363 39.130 0.00 0.00 0.00 1.28
255 256 5.661312 AGTACAGGAGGACATACAAGCATAA 59.339 40.000 0.00 0.00 0.00 1.90
256 257 5.069119 CAGTACAGGAGGACATACAAGCATA 59.931 44.000 0.00 0.00 0.00 3.14
257 258 4.033709 AGTACAGGAGGACATACAAGCAT 58.966 43.478 0.00 0.00 0.00 3.79
258 259 3.195610 CAGTACAGGAGGACATACAAGCA 59.804 47.826 0.00 0.00 0.00 3.91
259 260 3.786635 CAGTACAGGAGGACATACAAGC 58.213 50.000 0.00 0.00 0.00 4.01
260 261 3.195610 TGCAGTACAGGAGGACATACAAG 59.804 47.826 0.00 0.00 0.00 3.16
261 262 3.169908 TGCAGTACAGGAGGACATACAA 58.830 45.455 0.00 0.00 0.00 2.41
262 263 2.815158 TGCAGTACAGGAGGACATACA 58.185 47.619 0.00 0.00 0.00 2.29
263 264 3.195825 ACTTGCAGTACAGGAGGACATAC 59.804 47.826 0.00 0.00 0.00 2.39
264 265 3.441101 ACTTGCAGTACAGGAGGACATA 58.559 45.455 0.00 0.00 0.00 2.29
265 266 2.260822 ACTTGCAGTACAGGAGGACAT 58.739 47.619 0.00 0.00 0.00 3.06
266 267 1.717032 ACTTGCAGTACAGGAGGACA 58.283 50.000 0.00 0.00 0.00 4.02
267 268 2.037251 TGAACTTGCAGTACAGGAGGAC 59.963 50.000 0.00 0.00 0.00 3.85
268 269 2.325484 TGAACTTGCAGTACAGGAGGA 58.675 47.619 0.00 0.00 0.00 3.71
269 270 2.839486 TGAACTTGCAGTACAGGAGG 57.161 50.000 0.00 0.00 0.00 4.30
270 271 4.331168 GCTAATGAACTTGCAGTACAGGAG 59.669 45.833 0.00 0.00 0.00 3.69
271 272 4.020218 AGCTAATGAACTTGCAGTACAGGA 60.020 41.667 0.00 0.00 0.00 3.86
272 273 4.093998 CAGCTAATGAACTTGCAGTACAGG 59.906 45.833 0.00 0.00 0.00 4.00
273 274 4.931601 TCAGCTAATGAACTTGCAGTACAG 59.068 41.667 0.00 0.00 34.02 2.74
274 275 4.893608 TCAGCTAATGAACTTGCAGTACA 58.106 39.130 0.00 0.00 34.02 2.90
275 276 5.409826 ACTTCAGCTAATGAACTTGCAGTAC 59.590 40.000 0.00 0.00 43.09 2.73
276 277 5.551233 ACTTCAGCTAATGAACTTGCAGTA 58.449 37.500 0.00 0.00 43.09 2.74
277 278 4.392940 ACTTCAGCTAATGAACTTGCAGT 58.607 39.130 0.00 0.00 43.09 4.40
278 279 5.368256 AACTTCAGCTAATGAACTTGCAG 57.632 39.130 0.00 0.00 43.09 4.41
279 280 5.772825 AAACTTCAGCTAATGAACTTGCA 57.227 34.783 0.00 0.00 43.09 4.08
280 281 7.133891 TCTAAACTTCAGCTAATGAACTTGC 57.866 36.000 0.00 0.00 43.09 4.01
281 282 9.766277 GATTCTAAACTTCAGCTAATGAACTTG 57.234 33.333 0.00 0.00 43.09 3.16
282 283 8.660373 CGATTCTAAACTTCAGCTAATGAACTT 58.340 33.333 0.00 0.00 43.09 2.66
283 284 8.035394 TCGATTCTAAACTTCAGCTAATGAACT 58.965 33.333 0.00 0.00 43.09 3.01
284 285 8.186178 TCGATTCTAAACTTCAGCTAATGAAC 57.814 34.615 0.00 0.00 43.09 3.18
285 286 8.251026 TCTCGATTCTAAACTTCAGCTAATGAA 58.749 33.333 0.00 0.00 45.79 2.57
286 287 7.772166 TCTCGATTCTAAACTTCAGCTAATGA 58.228 34.615 0.00 0.00 35.62 2.57
287 288 7.918033 TCTCTCGATTCTAAACTTCAGCTAATG 59.082 37.037 0.00 0.00 0.00 1.90
288 289 7.918562 GTCTCTCGATTCTAAACTTCAGCTAAT 59.081 37.037 0.00 0.00 0.00 1.73
289 290 7.121463 AGTCTCTCGATTCTAAACTTCAGCTAA 59.879 37.037 0.00 0.00 0.00 3.09
290 291 6.600032 AGTCTCTCGATTCTAAACTTCAGCTA 59.400 38.462 0.00 0.00 0.00 3.32
291 292 5.417580 AGTCTCTCGATTCTAAACTTCAGCT 59.582 40.000 0.00 0.00 0.00 4.24
292 293 5.514914 CAGTCTCTCGATTCTAAACTTCAGC 59.485 44.000 0.00 0.00 0.00 4.26
293 294 5.514914 GCAGTCTCTCGATTCTAAACTTCAG 59.485 44.000 0.00 0.00 0.00 3.02
294 295 5.048013 TGCAGTCTCTCGATTCTAAACTTCA 60.048 40.000 0.00 0.00 0.00 3.02
295 296 5.403246 TGCAGTCTCTCGATTCTAAACTTC 58.597 41.667 0.00 0.00 0.00 3.01
296 297 5.392767 TGCAGTCTCTCGATTCTAAACTT 57.607 39.130 0.00 0.00 0.00 2.66
297 298 5.047660 ACTTGCAGTCTCTCGATTCTAAACT 60.048 40.000 0.00 0.00 0.00 2.66
298 299 5.164954 ACTTGCAGTCTCTCGATTCTAAAC 58.835 41.667 0.00 0.00 0.00 2.01
299 300 5.392767 ACTTGCAGTCTCTCGATTCTAAA 57.607 39.130 0.00 0.00 0.00 1.85
300 301 5.048013 TGAACTTGCAGTCTCTCGATTCTAA 60.048 40.000 0.00 0.00 0.00 2.10
301 302 4.459337 TGAACTTGCAGTCTCTCGATTCTA 59.541 41.667 0.00 0.00 0.00 2.10
302 303 3.256879 TGAACTTGCAGTCTCTCGATTCT 59.743 43.478 0.00 0.00 0.00 2.40
303 304 3.579709 TGAACTTGCAGTCTCTCGATTC 58.420 45.455 0.00 0.00 0.00 2.52
304 305 3.667497 TGAACTTGCAGTCTCTCGATT 57.333 42.857 0.00 0.00 0.00 3.34
305 306 3.883830 ATGAACTTGCAGTCTCTCGAT 57.116 42.857 0.00 0.00 0.00 3.59
306 307 3.667497 AATGAACTTGCAGTCTCTCGA 57.333 42.857 0.00 0.00 0.00 4.04
307 308 5.845985 TTTAATGAACTTGCAGTCTCTCG 57.154 39.130 0.00 0.00 0.00 4.04
308 309 8.292448 TCAATTTTAATGAACTTGCAGTCTCTC 58.708 33.333 0.00 0.00 30.40 3.20
309 310 8.169977 TCAATTTTAATGAACTTGCAGTCTCT 57.830 30.769 0.00 0.00 30.40 3.10
310 311 8.801715 TTCAATTTTAATGAACTTGCAGTCTC 57.198 30.769 0.00 0.00 32.10 3.36
311 312 9.598517 TTTTCAATTTTAATGAACTTGCAGTCT 57.401 25.926 0.00 0.00 36.57 3.24
313 314 9.986833 GTTTTTCAATTTTAATGAACTTGCAGT 57.013 25.926 0.00 0.00 36.57 4.40
314 315 9.985318 TGTTTTTCAATTTTAATGAACTTGCAG 57.015 25.926 0.00 0.00 36.57 4.41
337 338 9.520515 AGTACATGAGGAATTTAGTTGAATGTT 57.479 29.630 0.00 0.00 0.00 2.71
338 339 8.950210 CAGTACATGAGGAATTTAGTTGAATGT 58.050 33.333 0.00 0.00 0.00 2.71
339 340 8.950210 ACAGTACATGAGGAATTTAGTTGAATG 58.050 33.333 0.00 0.00 0.00 2.67
350 351 9.998106 GTGGTAATAATACAGTACATGAGGAAT 57.002 33.333 0.00 0.00 33.45 3.01
351 352 9.209048 AGTGGTAATAATACAGTACATGAGGAA 57.791 33.333 0.00 0.00 33.45 3.36
352 353 8.638873 CAGTGGTAATAATACAGTACATGAGGA 58.361 37.037 0.00 0.00 33.45 3.71
353 354 8.421784 ACAGTGGTAATAATACAGTACATGAGG 58.578 37.037 0.00 0.00 33.45 3.86
354 355 9.817809 AACAGTGGTAATAATACAGTACATGAG 57.182 33.333 0.00 0.00 33.45 2.90
355 356 9.811995 GAACAGTGGTAATAATACAGTACATGA 57.188 33.333 0.00 0.00 33.45 3.07
356 357 9.817809 AGAACAGTGGTAATAATACAGTACATG 57.182 33.333 0.00 0.00 33.45 3.21
357 358 9.817809 CAGAACAGTGGTAATAATACAGTACAT 57.182 33.333 0.00 0.00 33.45 2.29
358 359 9.027202 TCAGAACAGTGGTAATAATACAGTACA 57.973 33.333 0.00 0.00 33.45 2.90
359 360 9.865321 TTCAGAACAGTGGTAATAATACAGTAC 57.135 33.333 0.00 0.00 33.45 2.73
361 362 9.787435 TTTTCAGAACAGTGGTAATAATACAGT 57.213 29.630 0.00 0.00 33.45 3.55
366 367 9.295825 TGTCATTTTCAGAACAGTGGTAATAAT 57.704 29.630 0.00 0.00 0.00 1.28
367 368 8.684386 TGTCATTTTCAGAACAGTGGTAATAA 57.316 30.769 0.00 0.00 0.00 1.40
368 369 7.936847 ACTGTCATTTTCAGAACAGTGGTAATA 59.063 33.333 6.23 0.00 37.10 0.98
369 370 6.772716 ACTGTCATTTTCAGAACAGTGGTAAT 59.227 34.615 6.23 0.00 37.10 1.89
370 371 6.119536 ACTGTCATTTTCAGAACAGTGGTAA 58.880 36.000 6.23 0.00 37.10 2.85
371 372 5.680619 ACTGTCATTTTCAGAACAGTGGTA 58.319 37.500 6.23 0.00 37.10 3.25
372 373 4.526970 ACTGTCATTTTCAGAACAGTGGT 58.473 39.130 6.23 0.00 37.10 4.16
373 374 5.276270 CAACTGTCATTTTCAGAACAGTGG 58.724 41.667 7.68 1.48 38.29 4.00
374 375 5.276270 CCAACTGTCATTTTCAGAACAGTG 58.724 41.667 7.68 0.00 38.29 3.66
375 376 4.339247 CCCAACTGTCATTTTCAGAACAGT 59.661 41.667 1.36 1.36 39.73 3.55
376 377 4.794003 GCCCAACTGTCATTTTCAGAACAG 60.794 45.833 0.00 0.00 36.81 3.16
377 378 3.068024 GCCCAACTGTCATTTTCAGAACA 59.932 43.478 0.00 0.00 36.81 3.18
378 379 3.068024 TGCCCAACTGTCATTTTCAGAAC 59.932 43.478 0.00 0.00 36.81 3.01
379 380 3.295093 TGCCCAACTGTCATTTTCAGAA 58.705 40.909 0.00 0.00 36.81 3.02
380 381 2.886523 CTGCCCAACTGTCATTTTCAGA 59.113 45.455 0.00 0.00 36.81 3.27
381 382 2.029649 CCTGCCCAACTGTCATTTTCAG 60.030 50.000 0.00 0.00 38.68 3.02
493 494 7.002276 TGTCAATCAGCAATGATATCCTTGAT 58.998 34.615 20.89 13.88 0.00 2.57
503 504 5.999600 CCTGGTATATGTCAATCAGCAATGA 59.000 40.000 0.00 0.00 0.00 2.57
512 513 2.972713 AGGCGACCTGGTATATGTCAAT 59.027 45.455 0.00 0.00 29.57 2.57
643 658 3.632145 GCCAAGAAAGTGGAGAAAAGACA 59.368 43.478 0.00 0.00 41.65 3.41
887 906 0.179119 GCTGTCATTCATGCAAGGGC 60.179 55.000 0.00 0.00 41.68 5.19
904 923 0.180406 ACTGACCAAAAGTGACGGCT 59.820 50.000 0.00 0.00 0.00 5.52
968 1003 3.490933 GCCGCTACAAGATGACTGATACA 60.491 47.826 0.00 0.00 0.00 2.29
1297 1348 0.171455 CGCTGAAGAAGAGGTACGCT 59.829 55.000 0.00 0.00 43.09 5.07
1331 1382 1.269998 GAAGGTGTACTGTGAGAGCGT 59.730 52.381 0.00 0.00 0.00 5.07
1339 1390 4.097418 AGCCATAGAAGAAGGTGTACTGT 58.903 43.478 0.00 0.00 0.00 3.55
1361 1412 1.476110 GGTGGAAGTGGTGTACTGCAA 60.476 52.381 0.00 0.00 40.26 4.08
1375 1426 0.988832 AGGTTATGGCGAAGGTGGAA 59.011 50.000 0.00 0.00 0.00 3.53
1376 1427 0.988832 AAGGTTATGGCGAAGGTGGA 59.011 50.000 0.00 0.00 0.00 4.02
1473 1524 1.377202 GTGATCTTTGCGGCTCCCA 60.377 57.895 0.00 0.00 0.00 4.37
1667 1736 2.105466 GCAGCCAGAAGGAGAAGCG 61.105 63.158 0.00 0.00 36.89 4.68
1886 1955 9.630098 AATTTATCACTCAAACTTGTAGCAATG 57.370 29.630 0.00 0.00 0.00 2.82
1900 1969 8.311109 TGTGAGCTTACAGTAATTTATCACTCA 58.689 33.333 7.32 10.66 36.40 3.41
2010 2081 8.484641 TGTTTGCAACTTGAACAATTTTCATA 57.515 26.923 0.00 0.00 30.96 2.15
2069 2140 5.636837 TCTTCTTGTTTTGTTCAAACTCGG 58.363 37.500 0.00 0.00 44.68 4.63
2206 2278 1.134491 CCTCCGGTTAAGACATGGACC 60.134 57.143 0.00 0.00 31.15 4.46
2313 2385 8.898761 TGATCTTTGTATGTGTTTGTACTTTGT 58.101 29.630 0.00 0.00 0.00 2.83
2314 2386 9.897744 ATGATCTTTGTATGTGTTTGTACTTTG 57.102 29.630 0.00 0.00 0.00 2.77
2318 2390 9.891828 TGAAATGATCTTTGTATGTGTTTGTAC 57.108 29.630 0.00 0.00 0.00 2.90
2374 2446 3.936902 TTGTGTTTGTACTGAGCGTTC 57.063 42.857 0.00 0.00 0.00 3.95
2493 2568 4.992381 ACTTAGTCATGTTGAACGCTTC 57.008 40.909 0.00 0.00 0.00 3.86
2833 2914 0.036732 AGATGGCGTTGGAAAGCTGA 59.963 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.