Multiple sequence alignment - TraesCS5D01G032100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G032100 chr5D 100.000 4343 0 0 1 4343 29502180 29506522 0.000000e+00 8021.0
1 TraesCS5D01G032100 chr5D 85.899 2170 179 45 998 3075 21672122 21674256 0.000000e+00 2194.0
2 TraesCS5D01G032100 chr5D 98.276 174 3 0 3064 3237 528841819 528841992 5.460000e-79 305.0
3 TraesCS5D01G032100 chr5D 95.302 149 6 1 2928 3075 29515705 29515853 7.260000e-58 235.0
4 TraesCS5D01G032100 chr5D 87.097 186 21 3 3236 3419 29515852 29516036 1.580000e-49 207.0
5 TraesCS5D01G032100 chr5D 83.152 184 22 3 3071 3254 37656536 37656710 4.500000e-35 159.0
6 TraesCS5D01G032100 chr5D 88.060 134 8 5 361 488 120797508 120797377 7.520000e-33 152.0
7 TraesCS5D01G032100 chr5D 88.060 134 9 4 361 488 503284940 503284808 7.520000e-33 152.0
8 TraesCS5D01G032100 chr5D 85.612 139 13 5 703 841 22374523 22374392 5.860000e-29 139.0
9 TraesCS5D01G032100 chr5D 97.619 42 1 0 510 551 120797388 120797347 6.020000e-09 73.1
10 TraesCS5D01G032100 chr5D 97.619 42 1 0 510 551 503284819 503284778 6.020000e-09 73.1
11 TraesCS5D01G032100 chr5B 95.341 2232 77 11 868 3075 21635183 21637411 0.000000e+00 3520.0
12 TraesCS5D01G032100 chr5B 85.882 1445 144 25 995 2383 15266336 15264896 0.000000e+00 1483.0
13 TraesCS5D01G032100 chr5B 94.353 425 6 3 3236 3642 21637410 21637834 1.700000e-178 636.0
14 TraesCS5D01G032100 chr5B 93.528 309 7 7 4043 4343 21638346 21638649 8.570000e-122 448.0
15 TraesCS5D01G032100 chr5B 95.785 261 10 1 1 261 21634087 21634346 1.870000e-113 420.0
16 TraesCS5D01G032100 chr5B 88.256 281 13 8 3727 3992 21638065 21638340 7.010000e-83 318.0
17 TraesCS5D01G032100 chr5B 91.584 202 17 0 164 365 130551771 130551570 3.310000e-71 279.0
18 TraesCS5D01G032100 chr5B 91.089 202 18 0 164 365 130627282 130627483 1.540000e-69 274.0
19 TraesCS5D01G032100 chr5B 94.194 155 9 0 679 833 21635030 21635184 2.020000e-58 237.0
20 TraesCS5D01G032100 chr5B 91.818 110 2 2 3643 3746 21637872 21637980 3.500000e-31 147.0
21 TraesCS5D01G032100 chr5B 98.529 68 1 0 580 647 21634734 21634801 2.120000e-23 121.0
22 TraesCS5D01G032100 chr5B 100.000 57 0 0 627 683 21634953 21635009 5.940000e-19 106.0
23 TraesCS5D01G032100 chr2A 87.190 1530 143 16 995 2475 574169356 574167831 0.000000e+00 1690.0
24 TraesCS5D01G032100 chr2A 85.950 121 9 5 361 475 80202699 80202817 5.900000e-24 122.0
25 TraesCS5D01G032100 chr5A 84.812 1330 128 32 992 2256 15035718 15037038 0.000000e+00 1269.0
26 TraesCS5D01G032100 chr5A 93.438 381 17 2 3963 4343 20190591 20190963 3.790000e-155 558.0
27 TraesCS5D01G032100 chr5A 87.705 366 19 14 2400 2750 15037597 15037951 1.880000e-108 403.0
28 TraesCS5D01G032100 chr5A 92.353 170 7 3 679 844 20189369 20189536 2.020000e-58 237.0
29 TraesCS5D01G032100 chr5A 84.946 186 21 3 3236 3419 20192416 20192596 9.590000e-42 182.0
30 TraesCS5D01G032100 chr5A 94.495 109 4 2 837 943 20190150 20190258 2.690000e-37 167.0
31 TraesCS5D01G032100 chr5A 83.893 149 11 2 511 647 20134210 20134357 3.520000e-26 130.0
32 TraesCS5D01G032100 chr5A 86.047 86 8 3 83 167 447320904 447320986 5.980000e-14 89.8
33 TraesCS5D01G032100 chr5A 93.878 49 1 2 509 556 520647086 520647039 6.020000e-09 73.1
34 TraesCS5D01G032100 chr7D 99.415 171 1 0 3071 3241 134104918 134105088 1.170000e-80 311.0
35 TraesCS5D01G032100 chr7D 97.283 184 1 4 3059 3239 611390893 611391075 4.220000e-80 309.0
36 TraesCS5D01G032100 chr7D 98.256 172 3 0 3067 3238 588769955 588769784 7.060000e-78 302.0
37 TraesCS5D01G032100 chr7D 94.737 190 5 4 3071 3258 586748731 586748545 1.530000e-74 291.0
38 TraesCS5D01G032100 chr7D 91.584 202 17 0 164 365 626663141 626663342 3.310000e-71 279.0
39 TraesCS5D01G032100 chr7D 79.024 205 34 9 3074 3275 228511625 228511427 9.800000e-27 132.0
40 TraesCS5D01G032100 chr7D 98.148 54 1 0 4216 4269 325580936 325580883 1.290000e-15 95.3
41 TraesCS5D01G032100 chr7D 87.059 85 7 4 83 165 49385988 49385906 4.620000e-15 93.5
42 TraesCS5D01G032100 chr7D 97.959 49 1 0 510 558 69249019 69249067 7.740000e-13 86.1
43 TraesCS5D01G032100 chr6D 95.855 193 6 2 3053 3245 27399073 27398883 1.170000e-80 311.0
44 TraesCS5D01G032100 chr6D 97.619 42 1 0 510 551 45514050 45514091 6.020000e-09 73.1
45 TraesCS5D01G032100 chr4D 97.778 180 3 1 3059 3238 113187161 113186983 4.220000e-80 309.0
46 TraesCS5D01G032100 chr4D 98.844 173 2 0 3065 3237 509649093 509649265 4.220000e-80 309.0
47 TraesCS5D01G032100 chr4D 95.722 187 6 2 3063 3248 486727887 486728072 2.540000e-77 300.0
48 TraesCS5D01G032100 chr4D 91.089 202 18 0 164 365 135059633 135059834 1.540000e-69 274.0
49 TraesCS5D01G032100 chr4D 98.182 55 0 1 4216 4269 160085669 160085615 1.290000e-15 95.3
50 TraesCS5D01G032100 chr4D 96.552 58 1 1 4212 4269 363960574 363960518 1.290000e-15 95.3
51 TraesCS5D01G032100 chr1D 95.767 189 4 4 3055 3241 410734572 410734758 7.060000e-78 302.0
52 TraesCS5D01G032100 chr1D 91.584 202 17 0 164 365 493806740 493806941 3.310000e-71 279.0
53 TraesCS5D01G032100 chr1D 87.634 186 19 4 3074 3257 469818613 469818430 3.400000e-51 213.0
54 TraesCS5D01G032100 chr1D 86.567 134 10 5 361 488 51880433 51880564 1.630000e-29 141.0
55 TraesCS5D01G032100 chr1D 85.315 143 5 8 361 488 254403753 254403612 2.720000e-27 134.0
56 TraesCS5D01G032100 chrUn 91.584 202 17 0 164 365 86492763 86492562 3.310000e-71 279.0
57 TraesCS5D01G032100 chrUn 91.584 202 16 1 164 365 186176702 186176902 1.190000e-70 278.0
58 TraesCS5D01G032100 chrUn 94.203 69 4 0 4275 4343 131921134 131921066 5.940000e-19 106.0
59 TraesCS5D01G032100 chrUn 84.884 86 12 1 83 167 218714262 218714177 7.740000e-13 86.1
60 TraesCS5D01G032100 chrUn 97.619 42 1 0 510 551 442413912 442413953 6.020000e-09 73.1
61 TraesCS5D01G032100 chr3B 91.542 201 16 1 164 364 5097603 5097802 4.280000e-70 276.0
62 TraesCS5D01G032100 chr3B 86.466 133 9 6 361 488 101921409 101921537 2.110000e-28 137.0
63 TraesCS5D01G032100 chr3B 86.466 133 7 8 361 488 430241413 430241287 7.580000e-28 135.0
64 TraesCS5D01G032100 chr3B 84.328 134 18 3 3126 3258 68913588 68913457 1.270000e-25 128.0
65 TraesCS5D01G032100 chr7B 91.089 202 18 0 164 365 742974018 742974219 1.540000e-69 274.0
66 TraesCS5D01G032100 chr7B 87.059 85 8 3 83 164 42874672 42874756 4.620000e-15 93.5
67 TraesCS5D01G032100 chr4A 95.152 165 8 0 3074 3238 514761027 514761191 1.200000e-65 261.0
68 TraesCS5D01G032100 chr4A 90.000 170 16 1 3074 3242 26539776 26539945 7.310000e-53 219.0
69 TraesCS5D01G032100 chr4A 85.294 136 10 7 361 488 309509487 309509620 9.800000e-27 132.0
70 TraesCS5D01G032100 chr4A 97.619 42 1 0 510 551 73808342 73808383 6.020000e-09 73.1
71 TraesCS5D01G032100 chr2B 90.909 187 9 5 3073 3257 425356469 425356289 1.210000e-60 244.0
72 TraesCS5D01G032100 chr3A 77.885 312 26 21 3934 4218 667700316 667700611 2.090000e-33 154.0
73 TraesCS5D01G032100 chr3A 95.588 68 3 0 4275 4342 667700600 667700667 4.590000e-20 110.0
74 TraesCS5D01G032100 chr2D 83.030 165 22 4 3074 3237 17139082 17139241 1.260000e-30 145.0
75 TraesCS5D01G032100 chr2D 98.214 56 0 1 4215 4269 554044646 554044701 3.570000e-16 97.1
76 TraesCS5D01G032100 chr4B 86.331 139 7 8 361 488 308690850 308690987 1.630000e-29 141.0
77 TraesCS5D01G032100 chr4B 100.000 53 0 0 4218 4270 417572525 417572577 9.940000e-17 99.0
78 TraesCS5D01G032100 chr4B 86.747 83 8 3 83 162 288180376 288180294 5.980000e-14 89.8
79 TraesCS5D01G032100 chr3D 94.203 69 4 0 4275 4343 169730257 169730325 5.940000e-19 106.0
80 TraesCS5D01G032100 chr3D 98.182 55 0 1 4216 4269 115049886 115049940 1.290000e-15 95.3
81 TraesCS5D01G032100 chr3D 87.059 85 10 1 84 167 329704654 329704738 1.290000e-15 95.3
82 TraesCS5D01G032100 chr6A 98.148 54 1 0 4216 4269 273874163 273874216 1.290000e-15 95.3
83 TraesCS5D01G032100 chr1B 86.047 86 8 3 84 166 584907888 584907804 5.980000e-14 89.8
84 TraesCS5D01G032100 chr6B 85.057 87 9 4 83 167 536695825 536695909 7.740000e-13 86.1
85 TraesCS5D01G032100 chr6B 97.619 42 1 0 510 551 625949451 625949492 6.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G032100 chr5D 29502180 29506522 4342 False 8021.000000 8021 100.000000 1 4343 1 chr5D.!!$F2 4342
1 TraesCS5D01G032100 chr5D 21672122 21674256 2134 False 2194.000000 2194 85.899000 998 3075 1 chr5D.!!$F1 2077
2 TraesCS5D01G032100 chr5B 15264896 15266336 1440 True 1483.000000 1483 85.882000 995 2383 1 chr5B.!!$R1 1388
3 TraesCS5D01G032100 chr5B 21634087 21638649 4562 False 661.444444 3520 94.644889 1 4343 9 chr5B.!!$F2 4342
4 TraesCS5D01G032100 chr2A 574167831 574169356 1525 True 1690.000000 1690 87.190000 995 2475 1 chr2A.!!$R1 1480
5 TraesCS5D01G032100 chr5A 15035718 15037951 2233 False 836.000000 1269 86.258500 992 2750 2 chr5A.!!$F3 1758
6 TraesCS5D01G032100 chr5A 20189369 20192596 3227 False 286.000000 558 91.308000 679 4343 4 chr5A.!!$F4 3664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 499 0.040425 CTGTTCGTTTTGCCTTCCCG 60.040 55.0 0.00 0.0 0.00 5.14 F
501 505 0.179070 GTTTTGCCTTCCCGCCAAAA 60.179 50.0 0.00 0.0 0.00 2.44 F
1221 2531 0.251341 AACCCAAGATCCTTTGCGCT 60.251 50.0 9.73 0.0 0.00 5.92 F
2661 4506 0.318441 TCAGAACTGGTCAGAAGCGG 59.682 55.0 4.84 0.0 35.32 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 2735 0.392461 ACAGCACGGCGATGGTAAAT 60.392 50.000 16.62 0.6 0.00 1.40 R
1582 2904 0.392998 ATGGTGATGACCGAGTTGCC 60.393 55.000 0.00 0.0 46.62 4.52 R
2837 4684 3.306166 AGAATTAATTTCACGCGACTCGG 59.694 43.478 15.93 0.0 36.75 4.63 R
3708 5628 0.250209 CTGCAGGCCAATCTCGCTAT 60.250 55.000 5.01 0.0 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 3.820557 ACGCCTGAACATATTAATGGCT 58.179 40.909 8.55 0.00 37.43 4.75
187 188 3.071495 CGTTGCGCAGTTAAGTTGG 57.929 52.632 11.31 0.00 0.00 3.77
190 191 2.158841 CGTTGCGCAGTTAAGTTGGTAT 59.841 45.455 11.31 0.00 0.00 2.73
207 208 4.832248 TGGTATGGAAGAACTGATGTGTC 58.168 43.478 0.00 0.00 0.00 3.67
209 210 1.795768 TGGAAGAACTGATGTGTCGC 58.204 50.000 0.00 0.00 0.00 5.19
270 271 7.956420 TTTTTAGCAGAACTTTGATAGTCGA 57.044 32.000 0.00 0.00 35.54 4.20
271 272 7.582435 TTTTAGCAGAACTTTGATAGTCGAG 57.418 36.000 0.00 0.00 35.54 4.04
272 273 6.510879 TTAGCAGAACTTTGATAGTCGAGA 57.489 37.500 0.00 0.00 35.54 4.04
273 274 4.992688 AGCAGAACTTTGATAGTCGAGAG 58.007 43.478 0.00 0.00 35.54 3.20
274 275 4.109050 GCAGAACTTTGATAGTCGAGAGG 58.891 47.826 0.00 0.00 35.54 3.69
275 276 4.381079 GCAGAACTTTGATAGTCGAGAGGT 60.381 45.833 0.00 0.00 35.54 3.85
276 277 5.098893 CAGAACTTTGATAGTCGAGAGGTG 58.901 45.833 0.00 0.00 35.54 4.00
277 278 3.512033 ACTTTGATAGTCGAGAGGTGC 57.488 47.619 0.00 0.00 28.23 5.01
278 279 2.826128 ACTTTGATAGTCGAGAGGTGCA 59.174 45.455 0.00 0.00 28.23 4.57
279 280 3.258372 ACTTTGATAGTCGAGAGGTGCAA 59.742 43.478 0.00 0.00 28.23 4.08
280 281 3.510388 TTGATAGTCGAGAGGTGCAAG 57.490 47.619 0.00 0.00 0.00 4.01
281 282 1.135139 TGATAGTCGAGAGGTGCAAGC 59.865 52.381 0.00 0.00 0.00 4.01
282 283 1.135139 GATAGTCGAGAGGTGCAAGCA 59.865 52.381 0.00 0.00 36.26 3.91
283 284 0.243907 TAGTCGAGAGGTGCAAGCAC 59.756 55.000 16.46 16.46 45.49 4.40
302 303 3.389206 GCGAGGTGTGAAGCGATC 58.611 61.111 0.00 0.00 0.00 3.69
303 304 1.153745 GCGAGGTGTGAAGCGATCT 60.154 57.895 0.00 0.00 0.00 2.75
304 305 1.142778 GCGAGGTGTGAAGCGATCTC 61.143 60.000 0.00 0.00 0.00 2.75
305 306 0.863538 CGAGGTGTGAAGCGATCTCG 60.864 60.000 0.00 0.00 43.27 4.04
306 307 0.171455 GAGGTGTGAAGCGATCTCGT 59.829 55.000 1.14 0.00 42.22 4.18
307 308 1.400846 GAGGTGTGAAGCGATCTCGTA 59.599 52.381 1.14 0.00 42.22 3.43
308 309 1.132643 AGGTGTGAAGCGATCTCGTAC 59.867 52.381 1.14 0.00 42.22 3.67
309 310 1.132643 GGTGTGAAGCGATCTCGTACT 59.867 52.381 1.14 0.00 42.22 2.73
310 311 2.353889 GGTGTGAAGCGATCTCGTACTA 59.646 50.000 1.14 0.00 42.22 1.82
311 312 3.181503 GGTGTGAAGCGATCTCGTACTAA 60.182 47.826 1.14 0.00 42.22 2.24
312 313 4.409570 GTGTGAAGCGATCTCGTACTAAA 58.590 43.478 1.14 0.00 42.22 1.85
313 314 4.262510 GTGTGAAGCGATCTCGTACTAAAC 59.737 45.833 1.14 0.00 42.22 2.01
314 315 4.083164 TGTGAAGCGATCTCGTACTAAACA 60.083 41.667 1.14 0.00 42.22 2.83
315 316 4.855388 GTGAAGCGATCTCGTACTAAACAA 59.145 41.667 1.14 0.00 42.22 2.83
316 317 5.344128 GTGAAGCGATCTCGTACTAAACAAA 59.656 40.000 1.14 0.00 42.22 2.83
317 318 6.034683 GTGAAGCGATCTCGTACTAAACAAAT 59.965 38.462 1.14 0.00 42.22 2.32
318 319 5.950965 AGCGATCTCGTACTAAACAAATG 57.049 39.130 1.14 0.00 42.22 2.32
319 320 4.804139 AGCGATCTCGTACTAAACAAATGG 59.196 41.667 1.14 0.00 42.22 3.16
320 321 4.802039 GCGATCTCGTACTAAACAAATGGA 59.198 41.667 1.14 0.00 42.22 3.41
321 322 5.290158 GCGATCTCGTACTAAACAAATGGAA 59.710 40.000 1.14 0.00 42.22 3.53
322 323 6.183360 GCGATCTCGTACTAAACAAATGGAAA 60.183 38.462 1.14 0.00 42.22 3.13
323 324 7.465513 GCGATCTCGTACTAAACAAATGGAAAT 60.466 37.037 1.14 0.00 42.22 2.17
324 325 8.388103 CGATCTCGTACTAAACAAATGGAAATT 58.612 33.333 0.00 0.00 34.11 1.82
325 326 9.490663 GATCTCGTACTAAACAAATGGAAATTG 57.509 33.333 0.00 0.00 0.00 2.32
326 327 8.610248 TCTCGTACTAAACAAATGGAAATTGA 57.390 30.769 0.00 0.00 0.00 2.57
327 328 8.500773 TCTCGTACTAAACAAATGGAAATTGAC 58.499 33.333 0.00 0.00 0.00 3.18
328 329 8.155821 TCGTACTAAACAAATGGAAATTGACA 57.844 30.769 0.00 0.00 0.00 3.58
329 330 8.286800 TCGTACTAAACAAATGGAAATTGACAG 58.713 33.333 0.00 0.00 0.00 3.51
330 331 7.060633 CGTACTAAACAAATGGAAATTGACAGC 59.939 37.037 0.00 0.00 0.00 4.40
331 332 6.815089 ACTAAACAAATGGAAATTGACAGCA 58.185 32.000 0.00 0.00 0.00 4.41
332 333 7.271511 ACTAAACAAATGGAAATTGACAGCAA 58.728 30.769 0.00 0.00 38.60 3.91
333 334 7.933033 ACTAAACAAATGGAAATTGACAGCAAT 59.067 29.630 0.00 0.00 46.35 3.56
334 335 9.421806 CTAAACAAATGGAAATTGACAGCAATA 57.578 29.630 0.00 0.00 43.71 1.90
335 336 8.674263 AAACAAATGGAAATTGACAGCAATAA 57.326 26.923 0.00 0.00 43.71 1.40
336 337 8.674263 AACAAATGGAAATTGACAGCAATAAA 57.326 26.923 0.00 0.00 43.71 1.40
337 338 8.674263 ACAAATGGAAATTGACAGCAATAAAA 57.326 26.923 0.00 0.00 43.71 1.52
338 339 9.118300 ACAAATGGAAATTGACAGCAATAAAAA 57.882 25.926 0.00 0.00 43.71 1.94
439 440 0.468226 GGCCATCGTGATTAGGGTCA 59.532 55.000 0.00 0.00 0.00 4.02
445 446 4.363999 CATCGTGATTAGGGTCACTCTTC 58.636 47.826 5.61 0.00 44.89 2.87
451 455 6.872020 CGTGATTAGGGTCACTCTTCTTTTTA 59.128 38.462 5.61 0.00 44.89 1.52
459 463 6.978659 GGGTCACTCTTCTTTTTAAACTTTGG 59.021 38.462 0.00 0.00 0.00 3.28
478 482 3.150767 TGGTGGAATTTAACCGGAACTG 58.849 45.455 9.46 0.00 39.47 3.16
479 483 3.151554 GGTGGAATTTAACCGGAACTGT 58.848 45.455 9.46 0.00 0.00 3.55
480 484 3.570975 GGTGGAATTTAACCGGAACTGTT 59.429 43.478 9.46 0.00 39.54 3.16
481 485 4.320714 GGTGGAATTTAACCGGAACTGTTC 60.321 45.833 9.46 12.05 36.99 3.18
482 486 3.499157 TGGAATTTAACCGGAACTGTTCG 59.501 43.478 9.46 9.34 36.99 3.95
483 487 3.499537 GGAATTTAACCGGAACTGTTCGT 59.500 43.478 9.46 5.01 36.99 3.85
484 488 4.023792 GGAATTTAACCGGAACTGTTCGTT 60.024 41.667 9.46 14.53 36.99 3.85
485 489 5.503662 AATTTAACCGGAACTGTTCGTTT 57.496 34.783 9.46 10.54 36.99 3.60
486 490 4.961435 TTTAACCGGAACTGTTCGTTTT 57.039 36.364 9.46 10.26 36.99 2.43
487 491 2.836479 AACCGGAACTGTTCGTTTTG 57.164 45.000 9.46 3.75 35.56 2.44
488 492 0.379316 ACCGGAACTGTTCGTTTTGC 59.621 50.000 9.46 0.00 35.56 3.68
489 493 0.317519 CCGGAACTGTTCGTTTTGCC 60.318 55.000 13.89 0.00 35.56 4.52
490 494 0.661020 CGGAACTGTTCGTTTTGCCT 59.339 50.000 13.89 0.00 35.56 4.75
491 495 1.064952 CGGAACTGTTCGTTTTGCCTT 59.935 47.619 13.89 0.00 35.56 4.35
492 496 2.727777 GGAACTGTTCGTTTTGCCTTC 58.272 47.619 13.89 0.00 35.56 3.46
493 497 2.543031 GGAACTGTTCGTTTTGCCTTCC 60.543 50.000 13.89 0.00 35.56 3.46
494 498 1.029681 ACTGTTCGTTTTGCCTTCCC 58.970 50.000 0.00 0.00 0.00 3.97
495 499 0.040425 CTGTTCGTTTTGCCTTCCCG 60.040 55.000 0.00 0.00 0.00 5.14
496 500 1.371267 GTTCGTTTTGCCTTCCCGC 60.371 57.895 0.00 0.00 0.00 6.13
497 501 2.557372 TTCGTTTTGCCTTCCCGCC 61.557 57.895 0.00 0.00 0.00 6.13
498 502 3.291383 CGTTTTGCCTTCCCGCCA 61.291 61.111 0.00 0.00 0.00 5.69
499 503 2.851071 CGTTTTGCCTTCCCGCCAA 61.851 57.895 0.00 0.00 0.00 4.52
500 504 1.443828 GTTTTGCCTTCCCGCCAAA 59.556 52.632 0.00 0.00 0.00 3.28
501 505 0.179070 GTTTTGCCTTCCCGCCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
502 506 0.541863 TTTTGCCTTCCCGCCAAAAA 59.458 45.000 0.00 0.00 0.00 1.94
527 531 4.856115 AAACTGTTCGTTTTGCCATTTG 57.144 36.364 0.00 0.00 43.06 2.32
528 532 3.791973 ACTGTTCGTTTTGCCATTTGA 57.208 38.095 0.00 0.00 0.00 2.69
529 533 3.705604 ACTGTTCGTTTTGCCATTTGAG 58.294 40.909 0.00 0.00 0.00 3.02
530 534 3.130340 ACTGTTCGTTTTGCCATTTGAGT 59.870 39.130 0.00 0.00 0.00 3.41
531 535 3.443037 TGTTCGTTTTGCCATTTGAGTG 58.557 40.909 0.00 0.00 0.00 3.51
532 536 3.119316 TGTTCGTTTTGCCATTTGAGTGT 60.119 39.130 0.00 0.00 0.00 3.55
533 537 3.791973 TCGTTTTGCCATTTGAGTGTT 57.208 38.095 0.00 0.00 0.00 3.32
534 538 4.116747 TCGTTTTGCCATTTGAGTGTTT 57.883 36.364 0.00 0.00 0.00 2.83
535 539 4.499183 TCGTTTTGCCATTTGAGTGTTTT 58.501 34.783 0.00 0.00 0.00 2.43
536 540 4.932200 TCGTTTTGCCATTTGAGTGTTTTT 59.068 33.333 0.00 0.00 0.00 1.94
537 541 5.062809 TCGTTTTGCCATTTGAGTGTTTTTC 59.937 36.000 0.00 0.00 0.00 2.29
538 542 5.163913 CGTTTTGCCATTTGAGTGTTTTTCA 60.164 36.000 0.00 0.00 0.00 2.69
539 543 6.456718 CGTTTTGCCATTTGAGTGTTTTTCAT 60.457 34.615 0.00 0.00 0.00 2.57
540 544 5.987777 TTGCCATTTGAGTGTTTTTCATG 57.012 34.783 0.00 0.00 0.00 3.07
541 545 4.378774 TGCCATTTGAGTGTTTTTCATGG 58.621 39.130 0.00 0.00 31.07 3.66
542 546 4.141756 TGCCATTTGAGTGTTTTTCATGGT 60.142 37.500 0.00 0.00 30.73 3.55
543 547 4.448732 GCCATTTGAGTGTTTTTCATGGTC 59.551 41.667 0.00 0.00 30.73 4.02
544 548 4.681025 CCATTTGAGTGTTTTTCATGGTCG 59.319 41.667 0.00 0.00 0.00 4.79
545 549 5.507149 CCATTTGAGTGTTTTTCATGGTCGA 60.507 40.000 0.00 0.00 0.00 4.20
546 550 5.766150 TTTGAGTGTTTTTCATGGTCGAT 57.234 34.783 0.00 0.00 0.00 3.59
547 551 6.869315 TTTGAGTGTTTTTCATGGTCGATA 57.131 33.333 0.00 0.00 0.00 2.92
548 552 6.869315 TTGAGTGTTTTTCATGGTCGATAA 57.131 33.333 0.00 0.00 0.00 1.75
549 553 6.869315 TGAGTGTTTTTCATGGTCGATAAA 57.131 33.333 0.00 0.00 0.00 1.40
550 554 7.265647 TGAGTGTTTTTCATGGTCGATAAAA 57.734 32.000 0.00 0.00 0.00 1.52
551 555 7.881142 TGAGTGTTTTTCATGGTCGATAAAAT 58.119 30.769 0.00 0.00 0.00 1.82
552 556 8.020819 TGAGTGTTTTTCATGGTCGATAAAATC 58.979 33.333 0.00 0.00 0.00 2.17
553 557 8.110860 AGTGTTTTTCATGGTCGATAAAATCT 57.889 30.769 0.00 0.00 0.00 2.40
554 558 8.576442 AGTGTTTTTCATGGTCGATAAAATCTT 58.424 29.630 0.00 0.00 0.00 2.40
555 559 9.191995 GTGTTTTTCATGGTCGATAAAATCTTT 57.808 29.630 0.00 0.00 0.00 2.52
556 560 9.405587 TGTTTTTCATGGTCGATAAAATCTTTC 57.594 29.630 0.00 0.00 0.00 2.62
557 561 9.626045 GTTTTTCATGGTCGATAAAATCTTTCT 57.374 29.630 0.00 0.00 0.00 2.52
560 564 7.715265 TCATGGTCGATAAAATCTTTCTAGC 57.285 36.000 0.00 0.00 0.00 3.42
561 565 7.500992 TCATGGTCGATAAAATCTTTCTAGCT 58.499 34.615 0.00 0.00 0.00 3.32
562 566 7.653713 TCATGGTCGATAAAATCTTTCTAGCTC 59.346 37.037 0.00 0.00 0.00 4.09
563 567 6.873997 TGGTCGATAAAATCTTTCTAGCTCA 58.126 36.000 0.00 0.00 0.00 4.26
564 568 7.500992 TGGTCGATAAAATCTTTCTAGCTCAT 58.499 34.615 0.00 0.00 0.00 2.90
565 569 7.987458 TGGTCGATAAAATCTTTCTAGCTCATT 59.013 33.333 0.00 0.00 0.00 2.57
566 570 8.279103 GGTCGATAAAATCTTTCTAGCTCATTG 58.721 37.037 0.00 0.00 0.00 2.82
567 571 7.796197 GTCGATAAAATCTTTCTAGCTCATTGC 59.204 37.037 0.00 0.00 43.29 3.56
576 580 4.440214 GCTCATTGCGAAACGTGG 57.560 55.556 0.00 0.00 0.00 4.94
577 581 1.866237 GCTCATTGCGAAACGTGGA 59.134 52.632 0.00 0.00 0.00 4.02
578 582 0.452784 GCTCATTGCGAAACGTGGAC 60.453 55.000 0.00 0.00 0.00 4.02
615 844 0.323451 ATTCCGGGCTCAAGGGTTTC 60.323 55.000 0.00 0.00 0.00 2.78
685 1111 4.154195 AGAACGTGATGCTTTCCAATGTAC 59.846 41.667 0.00 0.00 0.00 2.90
758 1188 8.341903 GCTAGCTTATCCTTGATTCTTTCTTTC 58.658 37.037 7.70 0.00 0.00 2.62
821 1251 5.362556 CCCATTCGGCTGTTTATAGATTG 57.637 43.478 0.00 0.00 0.00 2.67
832 1262 6.515696 GCTGTTTATAGATTGGATTTGAGGCC 60.516 42.308 0.00 0.00 0.00 5.19
833 1263 6.672593 TGTTTATAGATTGGATTTGAGGCCT 58.327 36.000 3.86 3.86 0.00 5.19
834 1264 6.547141 TGTTTATAGATTGGATTTGAGGCCTG 59.453 38.462 12.00 0.00 0.00 4.85
835 1265 2.449137 AGATTGGATTTGAGGCCTGG 57.551 50.000 12.00 0.00 0.00 4.45
836 1266 1.925255 AGATTGGATTTGAGGCCTGGA 59.075 47.619 12.00 0.00 0.00 3.86
837 1267 2.517127 AGATTGGATTTGAGGCCTGGAT 59.483 45.455 12.00 0.00 0.00 3.41
838 1268 3.723681 AGATTGGATTTGAGGCCTGGATA 59.276 43.478 12.00 0.00 0.00 2.59
839 1269 4.356190 AGATTGGATTTGAGGCCTGGATAT 59.644 41.667 12.00 0.00 0.00 1.63
840 1270 5.553162 AGATTGGATTTGAGGCCTGGATATA 59.447 40.000 12.00 0.00 0.00 0.86
841 1271 4.640771 TGGATTTGAGGCCTGGATATAC 57.359 45.455 12.00 0.00 0.00 1.47
842 1272 4.242811 TGGATTTGAGGCCTGGATATACT 58.757 43.478 12.00 0.00 0.00 2.12
843 1273 5.411493 TGGATTTGAGGCCTGGATATACTA 58.589 41.667 12.00 0.00 0.00 1.82
844 1274 5.485353 TGGATTTGAGGCCTGGATATACTAG 59.515 44.000 12.00 0.00 0.00 2.57
845 1275 4.891992 TTTGAGGCCTGGATATACTAGC 57.108 45.455 12.00 0.00 0.00 3.42
846 1276 3.835478 TGAGGCCTGGATATACTAGCT 57.165 47.619 12.00 0.00 0.00 3.32
847 1277 4.948062 TGAGGCCTGGATATACTAGCTA 57.052 45.455 12.00 0.00 0.00 3.32
848 1278 4.861196 TGAGGCCTGGATATACTAGCTAG 58.139 47.826 19.44 19.44 0.00 3.42
849 1279 4.211920 GAGGCCTGGATATACTAGCTAGG 58.788 52.174 24.35 7.36 44.57 3.02
850 1280 3.052490 AGGCCTGGATATACTAGCTAGGG 60.052 52.174 24.35 13.74 42.35 3.53
851 1281 3.309994 GGCCTGGATATACTAGCTAGGGT 60.310 52.174 24.35 14.36 42.35 4.34
852 1282 4.354662 GCCTGGATATACTAGCTAGGGTT 58.645 47.826 24.35 10.99 42.35 4.11
853 1283 4.778427 GCCTGGATATACTAGCTAGGGTTT 59.222 45.833 24.35 6.28 42.35 3.27
854 1284 5.105269 GCCTGGATATACTAGCTAGGGTTTC 60.105 48.000 24.35 15.12 42.35 2.78
855 1285 5.422650 CCTGGATATACTAGCTAGGGTTTCC 59.577 48.000 24.35 21.91 38.94 3.13
856 1286 6.228977 TGGATATACTAGCTAGGGTTTCCT 57.771 41.667 24.35 4.44 46.96 3.36
857 1287 6.254522 TGGATATACTAGCTAGGGTTTCCTC 58.745 44.000 24.35 10.92 43.66 3.71
858 1288 5.657745 GGATATACTAGCTAGGGTTTCCTCC 59.342 48.000 24.35 15.33 43.66 4.30
859 1289 2.177811 ACTAGCTAGGGTTTCCTCCC 57.822 55.000 24.35 0.00 43.66 4.30
865 1295 2.609921 GGGTTTCCTCCCGTCCCT 60.610 66.667 0.00 0.00 37.93 4.20
866 1296 2.667108 GGGTTTCCTCCCGTCCCTC 61.667 68.421 0.00 0.00 37.93 4.30
867 1297 2.667108 GGTTTCCTCCCGTCCCTCC 61.667 68.421 0.00 0.00 0.00 4.30
933 2021 2.207768 ACCCGTCCCCAACCCTTA 59.792 61.111 0.00 0.00 0.00 2.69
951 2245 4.080015 CCCTTAACCTGAGAGAGAGAGAGA 60.080 50.000 0.00 0.00 0.00 3.10
952 2246 5.126067 CCTTAACCTGAGAGAGAGAGAGAG 58.874 50.000 0.00 0.00 0.00 3.20
1032 2330 1.136774 CTGCGTCCTCGTCGATTCA 59.863 57.895 0.00 0.00 39.49 2.57
1094 2392 0.813821 ACGGCCCGAGACTTTACTAC 59.186 55.000 11.71 0.00 0.00 2.73
1134 2432 2.019984 GTTTCCTTATGGCCTGCTCAG 58.980 52.381 3.32 0.00 0.00 3.35
1155 2453 3.227276 CCGATCCCCTCCCGTCTG 61.227 72.222 0.00 0.00 0.00 3.51
1221 2531 0.251341 AACCCAAGATCCTTTGCGCT 60.251 50.000 9.73 0.00 0.00 5.92
1254 2564 2.969238 GTCCTCCGCATCGCCATG 60.969 66.667 0.00 0.00 0.00 3.66
1285 2595 2.558575 CCCCCACCCATAAACATCACAA 60.559 50.000 0.00 0.00 0.00 3.33
1375 2691 1.059913 CCCTCACCCTCACTTGTTCT 58.940 55.000 0.00 0.00 0.00 3.01
1582 2904 1.179152 TGGCCACTTTCAGCATCATG 58.821 50.000 0.00 0.00 0.00 3.07
1583 2905 0.458669 GGCCACTTTCAGCATCATGG 59.541 55.000 0.00 0.00 0.00 3.66
1738 3078 1.960763 CATGGCGGCTATGCGCTTA 60.961 57.895 13.48 5.78 39.13 3.09
1739 3079 1.003355 ATGGCGGCTATGCGCTTAT 60.003 52.632 9.73 0.00 39.13 1.73
1947 3293 5.410924 TGGATAATCGACTTCACTGTCAAG 58.589 41.667 0.00 0.00 36.82 3.02
2079 3440 2.354259 CCTGTTCTCAGCCTGAATGAC 58.646 52.381 0.00 0.00 40.09 3.06
2212 3579 2.282462 AAAGGAGCACCGCCTTGG 60.282 61.111 1.01 0.00 42.54 3.61
2425 4265 8.031277 GTGACAATGAATTTCCTTAGAATGCTT 58.969 33.333 0.00 0.00 0.00 3.91
2541 4385 1.593196 TGTTGTAGTGCCTCAAGTGC 58.407 50.000 0.00 0.00 0.00 4.40
2615 4460 6.174720 ACTTCACTCTCAATTACAAGTGGA 57.825 37.500 11.28 4.53 39.62 4.02
2661 4506 0.318441 TCAGAACTGGTCAGAAGCGG 59.682 55.000 4.84 0.00 35.32 5.52
2837 4684 6.366061 GGAGTGATGGTTAATTCTTTTTGCAC 59.634 38.462 0.00 0.00 0.00 4.57
2845 4692 0.306533 TTCTTTTTGCACCGAGTCGC 59.693 50.000 7.12 0.00 0.00 5.19
2854 4701 1.342555 CACCGAGTCGCGTGAAATTA 58.657 50.000 22.10 0.00 38.67 1.40
2856 4703 2.347452 CACCGAGTCGCGTGAAATTAAT 59.653 45.455 22.10 0.00 38.67 1.40
2870 4717 8.974570 GCGTGAAATTAATTCTTTTTATTTGCG 58.025 29.630 0.10 0.00 38.92 4.85
2871 4718 8.974570 CGTGAAATTAATTCTTTTTATTTGCGC 58.025 29.630 0.00 0.00 38.92 6.09
3084 4943 8.773033 TTTTATCTATTTACTACTCCCTCCGT 57.227 34.615 0.00 0.00 0.00 4.69
3085 4944 8.773033 TTTATCTATTTACTACTCCCTCCGTT 57.227 34.615 0.00 0.00 0.00 4.44
3086 4945 6.897706 ATCTATTTACTACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
3087 4946 5.136105 TCTATTTACTACTCCCTCCGTTCC 58.864 45.833 0.00 0.00 0.00 3.62
3088 4947 3.463048 TTTACTACTCCCTCCGTTCCT 57.537 47.619 0.00 0.00 0.00 3.36
3089 4948 4.591321 TTTACTACTCCCTCCGTTCCTA 57.409 45.455 0.00 0.00 0.00 2.94
3090 4949 4.591321 TTACTACTCCCTCCGTTCCTAA 57.409 45.455 0.00 0.00 0.00 2.69
3091 4950 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3092 4951 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3093 4952 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3094 4953 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3095 4954 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3096 4955 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3097 4956 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3098 4957 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3099 4958 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3100 4959 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3101 4960 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3102 4961 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3103 4962 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3104 4963 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3105 4964 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3106 4965 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3107 4966 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3108 4967 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3109 4968 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3110 4969 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3111 4970 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3112 4971 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3114 4973 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3115 4974 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3116 4975 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
3117 4976 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
3118 4977 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
3119 4978 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
3120 4979 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
3121 4980 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
3122 4981 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
3123 4982 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
3124 4983 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
3125 4984 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
3126 4985 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
3127 4986 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
3128 4987 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
3129 4988 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
3130 4989 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
3131 4990 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
3132 4991 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
3133 4992 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
3134 4993 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
3135 4994 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
3137 4996 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
3138 4997 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
3179 5038 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
3180 5039 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
3181 5040 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
3182 5041 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
3183 5042 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
3184 5043 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
3185 5044 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
3186 5045 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
3187 5046 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
3188 5047 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
3189 5048 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
3190 5049 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
3191 5050 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
3192 5051 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
3193 5052 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
3194 5053 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
3195 5054 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
3196 5055 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
3197 5056 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
3198 5057 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
3199 5058 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3200 5059 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3201 5060 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3202 5061 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3203 5062 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
3204 5063 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
3205 5064 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
3206 5065 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
3207 5066 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
3208 5067 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
3209 5068 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
3210 5069 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
3211 5070 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
3212 5071 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
3213 5072 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
3214 5073 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
3215 5074 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
3216 5075 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
3217 5076 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
3218 5077 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
3219 5078 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
3220 5079 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3221 5080 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3223 5082 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3224 5083 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3225 5084 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3226 5085 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3227 5086 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3228 5087 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
3229 5088 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3230 5089 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3231 5090 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3232 5091 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3233 5092 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3234 5093 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3240 5099 7.786464 AGTATTTAGGAACGGAGGGAGTATTTA 59.214 37.037 0.00 0.00 0.00 1.40
3355 5227 1.659098 GGAAATGAACTGCGTCTACCG 59.341 52.381 0.00 0.00 40.40 4.02
3437 5309 1.515954 CTCGCTCGTATGGGGTTGT 59.484 57.895 0.00 0.00 0.00 3.32
3510 5382 6.189677 TGTACTCCTAATTTGAATTTGGCG 57.810 37.500 10.74 8.18 39.91 5.69
3630 5507 3.544684 TGTTACTAGGAAGGATCGCGTA 58.455 45.455 5.77 0.00 0.00 4.42
3705 5625 1.059584 TTCCCAGGCCACAGTCTTCA 61.060 55.000 5.01 0.00 0.00 3.02
3708 5628 0.325933 CCAGGCCACAGTCTTCATCA 59.674 55.000 5.01 0.00 0.00 3.07
3753 5776 3.177228 AGCTTTCCCACTCTACATGTCT 58.823 45.455 0.00 0.00 0.00 3.41
3754 5777 3.584848 AGCTTTCCCACTCTACATGTCTT 59.415 43.478 0.00 0.00 0.00 3.01
3755 5778 4.042187 AGCTTTCCCACTCTACATGTCTTT 59.958 41.667 0.00 0.00 0.00 2.52
3756 5779 4.762251 GCTTTCCCACTCTACATGTCTTTT 59.238 41.667 0.00 0.00 0.00 2.27
3757 5780 5.241728 GCTTTCCCACTCTACATGTCTTTTT 59.758 40.000 0.00 0.00 0.00 1.94
3814 5839 2.005971 ATACCTTCCGTTTGCTCGTC 57.994 50.000 0.00 0.00 0.00 4.20
3831 5856 3.485633 TCGTCGTTCTAAACTGATGTCG 58.514 45.455 0.00 0.00 0.00 4.35
3873 5909 1.737363 GCTAGTCTGCGGTTTCAGAGG 60.737 57.143 0.00 0.00 43.10 3.69
3874 5910 0.246635 TAGTCTGCGGTTTCAGAGGC 59.753 55.000 0.00 0.00 43.10 4.70
3875 5911 1.004440 GTCTGCGGTTTCAGAGGCT 60.004 57.895 0.00 0.00 43.10 4.58
3876 5912 0.246635 GTCTGCGGTTTCAGAGGCTA 59.753 55.000 0.00 0.00 43.10 3.93
3895 5931 8.680903 AGAGGCTAGTCATTTACAAAATGAATG 58.319 33.333 19.81 13.02 38.27 2.67
3898 5934 8.250332 GGCTAGTCATTTACAAAATGAATGGAA 58.750 33.333 22.08 6.87 35.98 3.53
3992 6034 1.934459 CGGTAGTGAGGAGGGGAGGA 61.934 65.000 0.00 0.00 0.00 3.71
4001 6043 0.830023 GGAGGGGAGGAAGGAGATCG 60.830 65.000 0.00 0.00 0.00 3.69
4039 6081 0.109412 GTGCTTTGCCTCTCATGTGC 60.109 55.000 0.00 0.00 0.00 4.57
4051 6093 0.526310 TCATGTGCGCGAGAGATGAC 60.526 55.000 12.10 0.00 0.00 3.06
4079 6121 1.008538 CTCCGTGTGTTTTGCTGCC 60.009 57.895 0.00 0.00 0.00 4.85
4116 6158 1.717645 CTACACCTACACGCGTGTTTC 59.282 52.381 45.14 0.00 41.83 2.78
4118 6160 1.214367 CACCTACACGCGTGTTTCTT 58.786 50.000 45.14 25.95 41.83 2.52
4119 6161 1.191647 CACCTACACGCGTGTTTCTTC 59.808 52.381 45.14 0.00 41.83 2.87
4120 6162 1.068127 ACCTACACGCGTGTTTCTTCT 59.932 47.619 45.14 24.07 41.83 2.85
4121 6163 2.132762 CCTACACGCGTGTTTCTTCTT 58.867 47.619 45.14 23.33 41.83 2.52
4122 6164 2.155155 CCTACACGCGTGTTTCTTCTTC 59.845 50.000 45.14 0.00 41.83 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 3.712907 GAGCGGTAACCTGGGCCA 61.713 66.667 5.85 5.85 0.00 5.36
147 148 0.997726 GCTAGCGATCGAGCGGTAAC 60.998 60.000 30.94 24.67 42.68 2.50
187 188 3.307242 GCGACACATCAGTTCTTCCATAC 59.693 47.826 0.00 0.00 0.00 2.39
190 191 1.795768 GCGACACATCAGTTCTTCCA 58.204 50.000 0.00 0.00 0.00 3.53
207 208 2.240493 ATAGACAAGGATTTCCCGCG 57.760 50.000 0.00 0.00 40.87 6.46
251 252 4.142271 CCTCTCGACTATCAAAGTTCTGCT 60.142 45.833 0.00 0.00 39.07 4.24
252 253 4.109050 CCTCTCGACTATCAAAGTTCTGC 58.891 47.826 0.00 0.00 39.07 4.26
253 254 5.098893 CACCTCTCGACTATCAAAGTTCTG 58.901 45.833 0.00 0.00 39.07 3.02
254 255 4.381079 GCACCTCTCGACTATCAAAGTTCT 60.381 45.833 0.00 0.00 39.07 3.01
255 256 3.860536 GCACCTCTCGACTATCAAAGTTC 59.139 47.826 0.00 0.00 39.07 3.01
256 257 3.258372 TGCACCTCTCGACTATCAAAGTT 59.742 43.478 0.00 0.00 39.07 2.66
257 258 2.826128 TGCACCTCTCGACTATCAAAGT 59.174 45.455 0.00 0.00 42.80 2.66
258 259 3.510388 TGCACCTCTCGACTATCAAAG 57.490 47.619 0.00 0.00 0.00 2.77
259 260 3.849911 CTTGCACCTCTCGACTATCAAA 58.150 45.455 0.00 0.00 0.00 2.69
260 261 2.417379 GCTTGCACCTCTCGACTATCAA 60.417 50.000 0.00 0.00 0.00 2.57
261 262 1.135139 GCTTGCACCTCTCGACTATCA 59.865 52.381 0.00 0.00 0.00 2.15
262 263 1.135139 TGCTTGCACCTCTCGACTATC 59.865 52.381 0.00 0.00 0.00 2.08
263 264 1.134965 GTGCTTGCACCTCTCGACTAT 60.135 52.381 14.17 0.00 0.00 2.12
264 265 0.243907 GTGCTTGCACCTCTCGACTA 59.756 55.000 14.17 0.00 0.00 2.59
265 266 1.005630 GTGCTTGCACCTCTCGACT 60.006 57.895 14.17 0.00 0.00 4.18
266 267 2.029844 GGTGCTTGCACCTCTCGAC 61.030 63.158 30.77 8.50 41.84 4.20
267 268 2.343758 GGTGCTTGCACCTCTCGA 59.656 61.111 30.77 0.00 41.84 4.04
268 269 3.114616 CGGTGCTTGCACCTCTCG 61.115 66.667 33.12 20.64 42.87 4.04
269 270 3.426568 GCGGTGCTTGCACCTCTC 61.427 66.667 33.12 21.58 42.87 3.20
283 284 3.989698 ATCGCTTCACACCTCGCGG 62.990 63.158 6.13 0.00 45.11 6.46
284 285 2.507102 ATCGCTTCACACCTCGCG 60.507 61.111 0.00 0.00 46.28 5.87
285 286 1.142778 GAGATCGCTTCACACCTCGC 61.143 60.000 0.00 0.00 0.00 5.03
286 287 0.863538 CGAGATCGCTTCACACCTCG 60.864 60.000 0.00 0.00 37.72 4.63
287 288 0.171455 ACGAGATCGCTTCACACCTC 59.829 55.000 1.39 0.00 44.43 3.85
288 289 1.132643 GTACGAGATCGCTTCACACCT 59.867 52.381 1.39 0.00 44.43 4.00
289 290 1.132643 AGTACGAGATCGCTTCACACC 59.867 52.381 1.39 0.00 44.43 4.16
290 291 2.546195 AGTACGAGATCGCTTCACAC 57.454 50.000 1.39 0.00 44.43 3.82
291 292 4.083164 TGTTTAGTACGAGATCGCTTCACA 60.083 41.667 1.39 0.00 44.43 3.58
292 293 4.409570 TGTTTAGTACGAGATCGCTTCAC 58.590 43.478 1.39 0.00 44.43 3.18
293 294 4.690184 TGTTTAGTACGAGATCGCTTCA 57.310 40.909 1.39 0.00 44.43 3.02
294 295 6.403615 CATTTGTTTAGTACGAGATCGCTTC 58.596 40.000 1.39 0.00 44.43 3.86
295 296 5.291128 CCATTTGTTTAGTACGAGATCGCTT 59.709 40.000 1.39 0.00 44.43 4.68
296 297 4.804139 CCATTTGTTTAGTACGAGATCGCT 59.196 41.667 1.39 0.00 44.43 4.93
297 298 4.802039 TCCATTTGTTTAGTACGAGATCGC 59.198 41.667 1.39 0.00 44.43 4.58
298 299 6.880822 TTCCATTTGTTTAGTACGAGATCG 57.119 37.500 0.00 0.00 46.33 3.69
299 300 9.490663 CAATTTCCATTTGTTTAGTACGAGATC 57.509 33.333 0.00 0.00 0.00 2.75
300 301 9.226606 TCAATTTCCATTTGTTTAGTACGAGAT 57.773 29.630 0.00 0.00 0.00 2.75
301 302 8.500773 GTCAATTTCCATTTGTTTAGTACGAGA 58.499 33.333 0.00 0.00 0.00 4.04
302 303 8.286800 TGTCAATTTCCATTTGTTTAGTACGAG 58.713 33.333 0.00 0.00 0.00 4.18
303 304 8.155821 TGTCAATTTCCATTTGTTTAGTACGA 57.844 30.769 0.00 0.00 0.00 3.43
304 305 7.060633 GCTGTCAATTTCCATTTGTTTAGTACG 59.939 37.037 0.00 0.00 0.00 3.67
305 306 7.865385 TGCTGTCAATTTCCATTTGTTTAGTAC 59.135 33.333 0.00 0.00 0.00 2.73
306 307 7.946207 TGCTGTCAATTTCCATTTGTTTAGTA 58.054 30.769 0.00 0.00 0.00 1.82
307 308 6.815089 TGCTGTCAATTTCCATTTGTTTAGT 58.185 32.000 0.00 0.00 0.00 2.24
308 309 7.712264 TTGCTGTCAATTTCCATTTGTTTAG 57.288 32.000 0.00 0.00 0.00 1.85
309 310 9.770097 TTATTGCTGTCAATTTCCATTTGTTTA 57.230 25.926 3.37 0.00 42.51 2.01
310 311 8.674263 TTATTGCTGTCAATTTCCATTTGTTT 57.326 26.923 3.37 0.00 42.51 2.83
311 312 8.674263 TTTATTGCTGTCAATTTCCATTTGTT 57.326 26.923 3.37 0.00 42.51 2.83
312 313 8.674263 TTTTATTGCTGTCAATTTCCATTTGT 57.326 26.923 3.37 0.00 42.51 2.83
396 397 8.135529 GCCAAATTCTCCTTATTTTAGCGTTAT 58.864 33.333 0.00 0.00 0.00 1.89
397 398 7.415877 GGCCAAATTCTCCTTATTTTAGCGTTA 60.416 37.037 0.00 0.00 0.00 3.18
398 399 6.330278 GCCAAATTCTCCTTATTTTAGCGTT 58.670 36.000 0.00 0.00 0.00 4.84
399 400 5.163550 GGCCAAATTCTCCTTATTTTAGCGT 60.164 40.000 0.00 0.00 0.00 5.07
400 401 5.163561 TGGCCAAATTCTCCTTATTTTAGCG 60.164 40.000 0.61 0.00 0.00 4.26
401 402 6.220726 TGGCCAAATTCTCCTTATTTTAGC 57.779 37.500 0.61 0.00 0.00 3.09
402 403 7.141363 CGATGGCCAAATTCTCCTTATTTTAG 58.859 38.462 10.96 0.00 0.00 1.85
403 404 6.605594 ACGATGGCCAAATTCTCCTTATTTTA 59.394 34.615 10.96 0.00 0.00 1.52
404 405 5.422012 ACGATGGCCAAATTCTCCTTATTTT 59.578 36.000 10.96 0.00 0.00 1.82
405 406 4.956075 ACGATGGCCAAATTCTCCTTATTT 59.044 37.500 10.96 0.00 0.00 1.40
406 407 4.339247 CACGATGGCCAAATTCTCCTTATT 59.661 41.667 10.96 0.00 0.00 1.40
407 408 3.885297 CACGATGGCCAAATTCTCCTTAT 59.115 43.478 10.96 0.00 0.00 1.73
408 409 3.054728 TCACGATGGCCAAATTCTCCTTA 60.055 43.478 10.96 0.00 0.00 2.69
409 410 2.094675 CACGATGGCCAAATTCTCCTT 58.905 47.619 10.96 0.00 0.00 3.36
412 413 4.023707 CCTAATCACGATGGCCAAATTCTC 60.024 45.833 10.96 0.07 0.00 2.87
417 418 1.283613 ACCCTAATCACGATGGCCAAA 59.716 47.619 10.96 0.00 0.00 3.28
439 440 7.712204 TCCACCAAAGTTTAAAAAGAAGAGT 57.288 32.000 0.00 0.00 0.00 3.24
451 455 4.650131 TCCGGTTAAATTCCACCAAAGTTT 59.350 37.500 0.00 0.00 31.84 2.66
459 463 4.612033 CGAACAGTTCCGGTTAAATTCCAC 60.612 45.833 7.76 0.00 0.00 4.02
478 482 1.371267 GCGGGAAGGCAAAACGAAC 60.371 57.895 0.00 0.00 0.00 3.95
479 483 2.557372 GGCGGGAAGGCAAAACGAA 61.557 57.895 0.00 0.00 45.92 3.85
480 484 2.981350 GGCGGGAAGGCAAAACGA 60.981 61.111 0.00 0.00 45.92 3.85
507 511 4.111916 CTCAAATGGCAAAACGAACAGTT 58.888 39.130 0.00 0.00 46.76 3.16
508 512 3.130340 ACTCAAATGGCAAAACGAACAGT 59.870 39.130 0.00 0.00 0.00 3.55
509 513 3.486841 CACTCAAATGGCAAAACGAACAG 59.513 43.478 0.00 0.00 0.00 3.16
510 514 3.119316 ACACTCAAATGGCAAAACGAACA 60.119 39.130 0.00 0.00 0.00 3.18
511 515 3.443976 ACACTCAAATGGCAAAACGAAC 58.556 40.909 0.00 0.00 0.00 3.95
512 516 3.791973 ACACTCAAATGGCAAAACGAA 57.208 38.095 0.00 0.00 0.00 3.85
513 517 3.791973 AACACTCAAATGGCAAAACGA 57.208 38.095 0.00 0.00 0.00 3.85
514 518 4.856115 AAAACACTCAAATGGCAAAACG 57.144 36.364 0.00 0.00 0.00 3.60
515 519 6.175712 TGAAAAACACTCAAATGGCAAAAC 57.824 33.333 0.00 0.00 0.00 2.43
516 520 6.183360 CCATGAAAAACACTCAAATGGCAAAA 60.183 34.615 0.00 0.00 0.00 2.44
517 521 5.296283 CCATGAAAAACACTCAAATGGCAAA 59.704 36.000 0.00 0.00 0.00 3.68
518 522 4.815308 CCATGAAAAACACTCAAATGGCAA 59.185 37.500 0.00 0.00 0.00 4.52
519 523 4.141756 ACCATGAAAAACACTCAAATGGCA 60.142 37.500 0.00 0.00 29.50 4.92
520 524 4.379652 ACCATGAAAAACACTCAAATGGC 58.620 39.130 0.00 0.00 29.50 4.40
521 525 4.681025 CGACCATGAAAAACACTCAAATGG 59.319 41.667 0.00 0.00 31.79 3.16
522 526 5.518812 TCGACCATGAAAAACACTCAAATG 58.481 37.500 0.00 0.00 0.00 2.32
523 527 5.766150 TCGACCATGAAAAACACTCAAAT 57.234 34.783 0.00 0.00 0.00 2.32
524 528 5.766150 ATCGACCATGAAAAACACTCAAA 57.234 34.783 0.00 0.00 0.00 2.69
525 529 6.869315 TTATCGACCATGAAAAACACTCAA 57.131 33.333 0.00 0.00 0.00 3.02
526 530 6.869315 TTTATCGACCATGAAAAACACTCA 57.131 33.333 0.00 0.00 0.00 3.41
527 531 8.237267 AGATTTTATCGACCATGAAAAACACTC 58.763 33.333 0.00 0.00 0.00 3.51
528 532 8.110860 AGATTTTATCGACCATGAAAAACACT 57.889 30.769 0.00 0.00 0.00 3.55
529 533 8.742554 AAGATTTTATCGACCATGAAAAACAC 57.257 30.769 0.00 0.00 0.00 3.32
530 534 9.405587 GAAAGATTTTATCGACCATGAAAAACA 57.594 29.630 0.00 0.00 0.00 2.83
531 535 9.626045 AGAAAGATTTTATCGACCATGAAAAAC 57.374 29.630 0.00 0.00 0.00 2.43
534 538 8.612619 GCTAGAAAGATTTTATCGACCATGAAA 58.387 33.333 0.00 0.00 0.00 2.69
535 539 7.987458 AGCTAGAAAGATTTTATCGACCATGAA 59.013 33.333 0.00 0.00 0.00 2.57
536 540 7.500992 AGCTAGAAAGATTTTATCGACCATGA 58.499 34.615 0.00 0.00 0.00 3.07
537 541 7.439356 TGAGCTAGAAAGATTTTATCGACCATG 59.561 37.037 0.00 0.00 0.00 3.66
538 542 7.500992 TGAGCTAGAAAGATTTTATCGACCAT 58.499 34.615 0.00 0.00 0.00 3.55
539 543 6.873997 TGAGCTAGAAAGATTTTATCGACCA 58.126 36.000 0.00 0.00 0.00 4.02
540 544 7.954788 ATGAGCTAGAAAGATTTTATCGACC 57.045 36.000 0.00 0.00 0.00 4.79
541 545 7.796197 GCAATGAGCTAGAAAGATTTTATCGAC 59.204 37.037 0.00 0.00 41.15 4.20
542 546 7.306807 CGCAATGAGCTAGAAAGATTTTATCGA 60.307 37.037 0.00 0.00 42.61 3.59
543 547 6.789403 CGCAATGAGCTAGAAAGATTTTATCG 59.211 38.462 0.00 0.00 42.61 2.92
544 548 7.855545 TCGCAATGAGCTAGAAAGATTTTATC 58.144 34.615 0.00 0.00 42.61 1.75
545 549 7.792374 TCGCAATGAGCTAGAAAGATTTTAT 57.208 32.000 0.00 0.00 42.61 1.40
546 550 7.609760 TTCGCAATGAGCTAGAAAGATTTTA 57.390 32.000 0.00 0.00 42.61 1.52
547 551 6.500684 TTCGCAATGAGCTAGAAAGATTTT 57.499 33.333 0.00 0.00 42.61 1.82
548 552 6.317857 GTTTCGCAATGAGCTAGAAAGATTT 58.682 36.000 0.00 0.00 42.61 2.17
549 553 5.446473 CGTTTCGCAATGAGCTAGAAAGATT 60.446 40.000 0.00 0.00 42.61 2.40
550 554 4.033358 CGTTTCGCAATGAGCTAGAAAGAT 59.967 41.667 0.00 0.00 42.61 2.40
551 555 3.367932 CGTTTCGCAATGAGCTAGAAAGA 59.632 43.478 0.00 0.00 42.61 2.52
552 556 3.123621 ACGTTTCGCAATGAGCTAGAAAG 59.876 43.478 0.00 0.00 42.61 2.62
553 557 3.064207 ACGTTTCGCAATGAGCTAGAAA 58.936 40.909 0.00 0.00 42.61 2.52
554 558 2.411748 CACGTTTCGCAATGAGCTAGAA 59.588 45.455 0.00 0.00 42.61 2.10
555 559 1.992667 CACGTTTCGCAATGAGCTAGA 59.007 47.619 0.00 0.00 42.61 2.43
556 560 1.061131 CCACGTTTCGCAATGAGCTAG 59.939 52.381 0.00 0.00 42.61 3.42
557 561 1.075542 CCACGTTTCGCAATGAGCTA 58.924 50.000 0.00 0.00 42.61 3.32
558 562 0.602638 TCCACGTTTCGCAATGAGCT 60.603 50.000 0.00 0.00 42.61 4.09
559 563 0.452784 GTCCACGTTTCGCAATGAGC 60.453 55.000 0.00 0.00 40.87 4.26
560 564 1.148310 AGTCCACGTTTCGCAATGAG 58.852 50.000 0.00 0.00 0.00 2.90
561 565 2.442212 TAGTCCACGTTTCGCAATGA 57.558 45.000 0.00 0.00 0.00 2.57
562 566 2.787723 GCATAGTCCACGTTTCGCAATG 60.788 50.000 0.00 0.00 0.00 2.82
563 567 1.396996 GCATAGTCCACGTTTCGCAAT 59.603 47.619 0.00 0.00 0.00 3.56
564 568 0.793861 GCATAGTCCACGTTTCGCAA 59.206 50.000 0.00 0.00 0.00 4.85
565 569 1.348538 CGCATAGTCCACGTTTCGCA 61.349 55.000 0.00 0.00 0.00 5.10
566 570 1.343821 CGCATAGTCCACGTTTCGC 59.656 57.895 0.00 0.00 0.00 4.70
567 571 0.638746 GACGCATAGTCCACGTTTCG 59.361 55.000 0.00 0.00 43.95 3.46
568 572 0.638746 CGACGCATAGTCCACGTTTC 59.361 55.000 0.00 0.00 46.92 2.78
569 573 0.241749 TCGACGCATAGTCCACGTTT 59.758 50.000 0.00 0.00 46.92 3.60
570 574 0.241749 TTCGACGCATAGTCCACGTT 59.758 50.000 0.00 0.00 46.92 3.99
571 575 0.454600 ATTCGACGCATAGTCCACGT 59.545 50.000 0.00 0.00 46.92 4.49
572 576 2.307929 CTATTCGACGCATAGTCCACG 58.692 52.381 6.38 0.00 46.92 4.94
573 577 2.292569 TCCTATTCGACGCATAGTCCAC 59.707 50.000 12.48 0.00 46.92 4.02
574 578 2.578786 TCCTATTCGACGCATAGTCCA 58.421 47.619 12.48 0.00 46.92 4.02
575 579 3.851976 ATCCTATTCGACGCATAGTCC 57.148 47.619 12.48 0.00 46.92 3.85
576 580 5.972382 GGAATATCCTATTCGACGCATAGTC 59.028 44.000 12.48 4.28 38.88 2.59
577 581 5.448768 CGGAATATCCTATTCGACGCATAGT 60.449 44.000 12.48 0.00 33.30 2.12
578 582 4.970611 CGGAATATCCTATTCGACGCATAG 59.029 45.833 7.45 7.45 33.30 2.23
685 1111 0.867086 TTTCGGTTTTACGGGCTTCG 59.133 50.000 0.00 0.00 45.88 3.79
758 1188 3.522731 AGCCTGCTAGAGCCGACG 61.523 66.667 0.00 0.00 41.18 5.12
821 1251 4.917906 AGTATATCCAGGCCTCAAATCC 57.082 45.455 0.00 0.00 0.00 3.01
832 1262 6.257586 AGGAAACCCTAGCTAGTATATCCAG 58.742 44.000 23.71 8.37 30.72 3.86
833 1263 6.228977 AGGAAACCCTAGCTAGTATATCCA 57.771 41.667 23.71 0.00 30.72 3.41
834 1264 5.657745 GGAGGAAACCCTAGCTAGTATATCC 59.342 48.000 19.31 18.69 33.25 2.59
835 1265 5.657745 GGGAGGAAACCCTAGCTAGTATATC 59.342 48.000 19.31 11.55 45.90 1.63
836 1266 5.591806 GGGAGGAAACCCTAGCTAGTATAT 58.408 45.833 19.31 3.23 45.90 0.86
837 1267 5.008165 GGGAGGAAACCCTAGCTAGTATA 57.992 47.826 19.31 0.00 45.90 1.47
838 1268 3.859370 GGGAGGAAACCCTAGCTAGTAT 58.141 50.000 19.31 4.13 45.90 2.12
839 1269 3.325359 GGGAGGAAACCCTAGCTAGTA 57.675 52.381 19.31 0.00 45.90 1.82
840 1270 2.177811 GGGAGGAAACCCTAGCTAGT 57.822 55.000 19.31 0.28 45.90 2.57
848 1278 2.609921 AGGGACGGGAGGAAACCC 60.610 66.667 0.00 0.00 45.92 4.11
849 1279 2.667108 GGAGGGACGGGAGGAAACC 61.667 68.421 0.00 0.00 0.00 3.27
850 1280 2.667108 GGGAGGGACGGGAGGAAAC 61.667 68.421 0.00 0.00 0.00 2.78
851 1281 2.285144 GGGAGGGACGGGAGGAAA 60.285 66.667 0.00 0.00 0.00 3.13
852 1282 3.607299 TGGGAGGGACGGGAGGAA 61.607 66.667 0.00 0.00 0.00 3.36
853 1283 4.393778 GTGGGAGGGACGGGAGGA 62.394 72.222 0.00 0.00 0.00 3.71
855 1285 4.715130 TGGTGGGAGGGACGGGAG 62.715 72.222 0.00 0.00 0.00 4.30
856 1286 4.257810 TTGGTGGGAGGGACGGGA 62.258 66.667 0.00 0.00 0.00 5.14
857 1287 4.029809 GTTGGTGGGAGGGACGGG 62.030 72.222 0.00 0.00 0.00 5.28
858 1288 2.928396 AGTTGGTGGGAGGGACGG 60.928 66.667 0.00 0.00 0.00 4.79
859 1289 1.553690 ATCAGTTGGTGGGAGGGACG 61.554 60.000 0.00 0.00 0.00 4.79
860 1290 0.035056 CATCAGTTGGTGGGAGGGAC 60.035 60.000 0.00 0.00 0.00 4.46
861 1291 1.852157 GCATCAGTTGGTGGGAGGGA 61.852 60.000 0.00 0.00 0.00 4.20
862 1292 1.379044 GCATCAGTTGGTGGGAGGG 60.379 63.158 0.00 0.00 0.00 4.30
863 1293 1.746615 CGCATCAGTTGGTGGGAGG 60.747 63.158 3.57 0.00 0.00 4.30
864 1294 2.401766 GCGCATCAGTTGGTGGGAG 61.402 63.158 12.94 0.00 0.00 4.30
865 1295 2.359850 GCGCATCAGTTGGTGGGA 60.360 61.111 12.94 0.00 0.00 4.37
866 1296 3.443045 GGCGCATCAGTTGGTGGG 61.443 66.667 10.83 5.18 0.00 4.61
867 1297 3.803082 CGGCGCATCAGTTGGTGG 61.803 66.667 10.83 0.00 0.00 4.61
933 2021 4.104086 TCTCTCTCTCTCTCTCTCAGGTT 58.896 47.826 0.00 0.00 0.00 3.50
951 2245 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
952 2246 5.596361 TCTTCTCTCTCTCTCTCTCTCTCTC 59.404 48.000 0.00 0.00 0.00 3.20
1032 2330 2.438975 TCGTCGATGTACGCCCCT 60.439 61.111 4.21 0.00 42.56 4.79
1086 2384 7.492524 TCATCTGATTGCCTGTAGTAGTAAAG 58.507 38.462 0.00 0.00 0.00 1.85
1094 2392 4.082665 ACCATCATCTGATTGCCTGTAG 57.917 45.455 0.00 0.00 31.21 2.74
1155 2453 2.320587 CCTCTTGCAGTGCACGGAC 61.321 63.158 19.58 12.21 38.71 4.79
1181 2491 0.250234 CTGGAAGAAGACATGGCCGA 59.750 55.000 0.00 0.00 34.07 5.54
1285 2595 5.359576 AGATGAAGTAGTCGCTCATCTTCTT 59.640 40.000 7.77 0.00 43.19 2.52
1375 2691 0.396435 ACGCCAACCTCATTGTCTGA 59.604 50.000 0.00 0.00 36.47 3.27
1408 2724 1.395608 CACGGCGATGGTAAATTCGTT 59.604 47.619 16.62 0.00 37.66 3.85
1413 2735 0.392461 ACAGCACGGCGATGGTAAAT 60.392 50.000 16.62 0.60 0.00 1.40
1562 2884 1.546923 CATGATGCTGAAAGTGGCCAA 59.453 47.619 7.24 0.00 35.30 4.52
1582 2904 0.392998 ATGGTGATGACCGAGTTGCC 60.393 55.000 0.00 0.00 46.62 4.52
1583 2905 1.009829 GATGGTGATGACCGAGTTGC 58.990 55.000 0.00 0.00 46.62 4.17
1729 3069 2.637947 TGGACAGCAAATAAGCGCATA 58.362 42.857 11.47 0.97 40.15 3.14
1738 3078 2.562738 GGTAAGGCTTTGGACAGCAAAT 59.437 45.455 4.45 0.00 42.10 2.32
1739 3079 1.960689 GGTAAGGCTTTGGACAGCAAA 59.039 47.619 4.45 0.00 42.10 3.68
2190 3557 3.435186 GCGGTGCTCCTTTCAGCC 61.435 66.667 2.85 0.00 38.80 4.85
2212 3579 3.831715 ACAAGGAAAATACTTGAGCGC 57.168 42.857 9.24 0.00 46.27 5.92
2425 4265 7.123098 TCACTACAATGTTAATTCTCCTCGGTA 59.877 37.037 0.00 0.00 0.00 4.02
2541 4385 9.656040 TTTGATTGGTTTCTTGGAATAATGATG 57.344 29.630 0.00 0.00 0.00 3.07
2615 4460 4.973168 ACACTGGACAATTGTCATGTACT 58.027 39.130 33.42 18.29 46.47 2.73
2661 4506 6.150396 ACCATATGTTCTCTACTGCAGTAC 57.850 41.667 22.67 15.50 0.00 2.73
2837 4684 3.306166 AGAATTAATTTCACGCGACTCGG 59.694 43.478 15.93 0.00 36.75 4.63
2845 4692 8.974570 GCGCAAATAAAAAGAATTAATTTCACG 58.025 29.630 0.30 0.00 36.75 4.35
2854 4701 8.309163 TCATTTCAGCGCAAATAAAAAGAATT 57.691 26.923 11.47 0.00 0.00 2.17
2856 4703 6.922957 ACTCATTTCAGCGCAAATAAAAAGAA 59.077 30.769 11.47 0.00 0.00 2.52
3007 4866 5.592282 TCTTCTACCAATTCAAACAGCAACA 59.408 36.000 0.00 0.00 0.00 3.33
3062 4921 6.944862 GGAACGGAGGGAGTAGTAAATAGATA 59.055 42.308 0.00 0.00 0.00 1.98
3073 4932 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
3074 4933 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3075 4934 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3076 4935 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3077 4936 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3078 4937 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3079 4938 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3080 4939 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3081 4940 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
3082 4941 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3083 4942 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3084 4943 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3085 4944 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3086 4945 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3088 4947 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3089 4948 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3090 4949 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
3091 4950 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
3092 4951 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
3093 4952 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
3094 4953 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
3095 4954 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
3096 4955 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
3097 4956 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
3098 4957 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
3099 4958 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
3100 4959 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
3101 4960 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
3102 4961 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
3103 4962 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
3104 4963 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
3105 4964 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
3106 4965 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
3107 4966 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
3108 4967 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
3109 4968 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
3110 4969 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
3111 4970 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
3112 4971 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
3113 4972 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
3114 4973 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
3155 5014 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
3156 5015 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
3172 5031 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
3173 5032 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
3174 5033 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
3175 5034 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3176 5035 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3177 5036 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
3178 5037 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
3179 5038 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
3180 5039 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
3181 5040 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
3182 5041 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
3183 5042 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
3184 5043 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
3185 5044 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
3186 5045 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
3187 5046 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
3188 5047 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
3189 5048 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
3190 5049 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
3191 5050 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3192 5051 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
3193 5052 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3194 5053 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3195 5054 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3197 5056 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3198 5057 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3199 5058 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3200 5059 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3201 5060 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3202 5061 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3203 5062 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3204 5063 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3205 5064 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3206 5065 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3207 5066 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3208 5067 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3209 5068 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3210 5069 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3211 5070 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3212 5071 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3213 5072 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3214 5073 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3215 5074 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
3216 5075 8.731591 ATAAATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
3217 5076 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
3218 5077 6.842807 AGATAAATACTCCCTCCGTTCCTAAA 59.157 38.462 0.00 0.00 0.00 1.85
3219 5078 6.379579 AGATAAATACTCCCTCCGTTCCTAA 58.620 40.000 0.00 0.00 0.00 2.69
3220 5079 5.961897 AGATAAATACTCCCTCCGTTCCTA 58.038 41.667 0.00 0.00 0.00 2.94
3221 5080 4.817286 AGATAAATACTCCCTCCGTTCCT 58.183 43.478 0.00 0.00 0.00 3.36
3222 5081 5.548181 AAGATAAATACTCCCTCCGTTCC 57.452 43.478 0.00 0.00 0.00 3.62
3223 5082 7.893658 TGATAAGATAAATACTCCCTCCGTTC 58.106 38.462 0.00 0.00 0.00 3.95
3224 5083 7.850935 TGATAAGATAAATACTCCCTCCGTT 57.149 36.000 0.00 0.00 0.00 4.44
3225 5084 7.850935 TTGATAAGATAAATACTCCCTCCGT 57.149 36.000 0.00 0.00 0.00 4.69
3226 5085 8.585881 TCTTTGATAAGATAAATACTCCCTCCG 58.414 37.037 0.00 0.00 35.49 4.63
3227 5086 9.936759 CTCTTTGATAAGATAAATACTCCCTCC 57.063 37.037 0.00 0.00 39.58 4.30
3228 5087 9.430623 GCTCTTTGATAAGATAAATACTCCCTC 57.569 37.037 0.00 0.00 39.58 4.30
3229 5088 9.165057 AGCTCTTTGATAAGATAAATACTCCCT 57.835 33.333 0.00 0.00 39.58 4.20
3230 5089 9.213799 CAGCTCTTTGATAAGATAAATACTCCC 57.786 37.037 0.00 0.00 39.58 4.30
3231 5090 9.988815 TCAGCTCTTTGATAAGATAAATACTCC 57.011 33.333 0.00 0.00 39.58 3.85
3461 5333 9.071276 AGGAAAATAAGATATAACCACATGCAG 57.929 33.333 0.00 0.00 0.00 4.41
3510 5382 8.679100 TGTAAATAACACTGGTAATGCAATACC 58.321 33.333 22.00 22.00 38.55 2.73
3630 5507 1.956477 AGTTTTCATCAAGCGGCAACT 59.044 42.857 1.45 0.00 0.00 3.16
3705 5625 1.610102 GCAGGCCAATCTCGCTATGAT 60.610 52.381 5.01 0.00 0.00 2.45
3708 5628 0.250209 CTGCAGGCCAATCTCGCTAT 60.250 55.000 5.01 0.00 0.00 2.97
3814 5839 4.443063 TGTTGACGACATCAGTTTAGAACG 59.557 41.667 0.00 0.00 38.99 3.95
3873 5909 9.638239 TTTCCATTCATTTTGTAAATGACTAGC 57.362 29.630 12.89 0.00 36.49 3.42
3930 5966 0.396811 CTTCCTTCCCGTGTTGGAGT 59.603 55.000 0.00 0.00 42.00 3.85
3936 5972 1.551019 GGCTACCTTCCTTCCCGTGT 61.551 60.000 0.00 0.00 0.00 4.49
3992 6034 1.571457 TCTCTCCCCTTCGATCTCCTT 59.429 52.381 0.00 0.00 0.00 3.36
4001 6043 1.148048 GCCATGCTCTCTCCCCTTC 59.852 63.158 0.00 0.00 0.00 3.46
4039 6081 1.851053 CACATCTTGTCATCTCTCGCG 59.149 52.381 0.00 0.00 0.00 5.87
4051 6093 0.603707 ACACACGGAGCCACATCTTG 60.604 55.000 0.00 0.00 0.00 3.02
4079 6121 2.052157 GTAGCTTAGTAATCAGCGGCG 58.948 52.381 0.51 0.51 41.24 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.