Multiple sequence alignment - TraesCS5D01G031700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G031700 chr5D 100.000 3946 0 0 1 3946 29131316 29135261 0.000000e+00 7287.0
1 TraesCS5D01G031700 chr5D 84.392 551 44 17 2394 2912 28948073 28948613 1.640000e-138 503.0
2 TraesCS5D01G031700 chr5D 89.655 319 24 5 1809 2120 28947619 28947935 7.950000e-107 398.0
3 TraesCS5D01G031700 chr5D 88.350 309 21 8 2923 3220 28949358 28949662 1.350000e-94 357.0
4 TraesCS5D01G031700 chr5D 75.280 894 119 52 2599 3412 28940406 28941277 2.270000e-87 333.0
5 TraesCS5D01G031700 chr5D 90.104 192 11 7 2136 2324 12037656 12037470 3.940000e-60 243.0
6 TraesCS5D01G031700 chr5D 83.803 142 20 2 1350 1488 28939231 28939372 8.900000e-27 132.0
7 TraesCS5D01G031700 chr5A 85.103 1705 126 60 552 2215 19910434 19912051 0.000000e+00 1624.0
8 TraesCS5D01G031700 chr5A 83.172 1034 106 40 1332 2332 19680315 19681313 0.000000e+00 883.0
9 TraesCS5D01G031700 chr5A 83.781 857 75 26 2417 3219 19681422 19682268 0.000000e+00 754.0
10 TraesCS5D01G031700 chr5A 83.707 669 86 15 3261 3918 19861931 19862587 9.370000e-171 610.0
11 TraesCS5D01G031700 chr5A 83.654 624 52 24 2799 3388 19913038 19913645 3.470000e-150 542.0
12 TraesCS5D01G031700 chr5A 87.441 422 33 10 944 1354 19679892 19680304 5.970000e-128 468.0
13 TraesCS5D01G031700 chr5A 91.257 183 11 5 2143 2324 526657969 526657791 1.100000e-60 244.0
14 TraesCS5D01G031700 chr5A 83.462 260 37 2 1860 2119 19667775 19668028 1.830000e-58 237.0
15 TraesCS5D01G031700 chr5A 83.274 281 21 14 2302 2563 19912180 19912453 6.590000e-58 235.0
16 TraesCS5D01G031700 chr5A 87.166 187 11 4 692 877 19679555 19679729 2.400000e-47 200.0
17 TraesCS5D01G031700 chr5A 83.333 138 17 3 1354 1488 19667249 19667383 5.350000e-24 122.0
18 TraesCS5D01G031700 chr5B 85.046 1411 103 50 805 2157 21524487 21525847 0.000000e+00 1338.0
19 TraesCS5D01G031700 chr5B 82.933 1289 125 49 2673 3913 21526305 21527546 0.000000e+00 1074.0
20 TraesCS5D01G031700 chr5B 83.680 962 104 34 2984 3919 21598951 21598017 0.000000e+00 857.0
21 TraesCS5D01G031700 chr5B 84.488 722 60 29 829 1522 21606547 21605850 0.000000e+00 665.0
22 TraesCS5D01G031700 chr5B 87.555 458 30 17 1745 2190 21600215 21599773 4.550000e-139 505.0
23 TraesCS5D01G031700 chr5B 80.995 563 102 3 3 563 696434953 696434394 3.620000e-120 442.0
24 TraesCS5D01G031700 chr5B 75.503 894 115 64 2599 3412 21413024 21413893 3.780000e-90 342.0
25 TraesCS5D01G031700 chr5B 81.514 449 43 16 2461 2882 21599384 21598949 2.270000e-87 333.0
26 TraesCS5D01G031700 chr5B 85.000 260 33 3 1860 2119 21412368 21412621 3.910000e-65 259.0
27 TraesCS5D01G031700 chr5B 90.811 185 13 2 1558 1739 21605672 21605489 1.100000e-60 244.0
28 TraesCS5D01G031700 chr5B 86.829 205 9 6 2392 2592 21525932 21526122 3.090000e-51 213.0
29 TraesCS5D01G031700 chr5B 81.884 138 22 2 1354 1488 21411874 21412011 3.220000e-21 113.0
30 TraesCS5D01G031700 chr5B 92.308 78 3 3 2396 2471 21599636 21599560 1.500000e-19 108.0
31 TraesCS5D01G031700 chr5B 82.243 107 6 5 700 806 21606638 21606545 3.270000e-11 80.5
32 TraesCS5D01G031700 chr5B 97.297 37 1 0 700 736 21524416 21524452 3.290000e-06 63.9
33 TraesCS5D01G031700 chr2B 81.722 569 99 3 2 568 209818516 209817951 1.660000e-128 470.0
34 TraesCS5D01G031700 chr2B 90.052 191 13 5 2155 2344 689781886 689781701 3.940000e-60 243.0
35 TraesCS5D01G031700 chr1B 81.488 578 101 4 7 581 671526388 671525814 1.660000e-128 470.0
36 TraesCS5D01G031700 chr1B 78.979 666 126 11 2 656 475285937 475286599 3.620000e-120 442.0
37 TraesCS5D01G031700 chr1B 81.159 552 99 3 20 569 522759060 522758512 4.680000e-119 438.0
38 TraesCS5D01G031700 chr1B 80.416 577 107 4 2 575 668069320 668069893 6.060000e-118 435.0
39 TraesCS5D01G031700 chr6B 80.844 569 104 3 3 569 339351747 339351182 3.620000e-120 442.0
40 TraesCS5D01G031700 chr1A 80.589 577 106 4 2 575 585040692 585041265 1.300000e-119 440.0
41 TraesCS5D01G031700 chr7B 80.927 561 98 5 21 575 511422586 511423143 6.060000e-118 435.0
42 TraesCS5D01G031700 chr6A 94.186 172 6 3 2156 2327 458217710 458217877 3.910000e-65 259.0
43 TraesCS5D01G031700 chr7D 93.567 171 7 3 2155 2325 312574293 312574127 6.550000e-63 252.0
44 TraesCS5D01G031700 chr2A 92.697 178 8 4 2156 2332 469790200 469790027 6.550000e-63 252.0
45 TraesCS5D01G031700 chr4D 91.758 182 9 5 2147 2327 243613445 243613269 8.470000e-62 248.0
46 TraesCS5D01G031700 chr1D 90.206 194 11 6 2134 2324 84712245 84712057 3.050000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G031700 chr5D 29131316 29135261 3945 False 7287.000000 7287 100.000000 1 3946 1 chr5D.!!$F1 3945
1 TraesCS5D01G031700 chr5D 28947619 28949662 2043 False 419.333333 503 87.465667 1809 3220 3 chr5D.!!$F3 1411
2 TraesCS5D01G031700 chr5D 28939231 28941277 2046 False 232.500000 333 79.541500 1350 3412 2 chr5D.!!$F2 2062
3 TraesCS5D01G031700 chr5A 19910434 19913645 3211 False 800.333333 1624 84.010333 552 3388 3 chr5A.!!$F4 2836
4 TraesCS5D01G031700 chr5A 19861931 19862587 656 False 610.000000 610 83.707000 3261 3918 1 chr5A.!!$F1 657
5 TraesCS5D01G031700 chr5A 19679555 19682268 2713 False 576.250000 883 85.390000 692 3219 4 chr5A.!!$F3 2527
6 TraesCS5D01G031700 chr5B 21524416 21527546 3130 False 672.225000 1338 88.026250 700 3913 4 chr5B.!!$F2 3213
7 TraesCS5D01G031700 chr5B 21598017 21600215 2198 True 450.750000 857 86.264250 1745 3919 4 chr5B.!!$R2 2174
8 TraesCS5D01G031700 chr5B 696434394 696434953 559 True 442.000000 442 80.995000 3 563 1 chr5B.!!$R1 560
9 TraesCS5D01G031700 chr5B 21605489 21606638 1149 True 329.833333 665 85.847333 700 1739 3 chr5B.!!$R3 1039
10 TraesCS5D01G031700 chr5B 21411874 21413893 2019 False 238.000000 342 80.795667 1354 3412 3 chr5B.!!$F1 2058
11 TraesCS5D01G031700 chr2B 209817951 209818516 565 True 470.000000 470 81.722000 2 568 1 chr2B.!!$R1 566
12 TraesCS5D01G031700 chr1B 671525814 671526388 574 True 470.000000 470 81.488000 7 581 1 chr1B.!!$R2 574
13 TraesCS5D01G031700 chr1B 475285937 475286599 662 False 442.000000 442 78.979000 2 656 1 chr1B.!!$F1 654
14 TraesCS5D01G031700 chr1B 522758512 522759060 548 True 438.000000 438 81.159000 20 569 1 chr1B.!!$R1 549
15 TraesCS5D01G031700 chr1B 668069320 668069893 573 False 435.000000 435 80.416000 2 575 1 chr1B.!!$F2 573
16 TraesCS5D01G031700 chr6B 339351182 339351747 565 True 442.000000 442 80.844000 3 569 1 chr6B.!!$R1 566
17 TraesCS5D01G031700 chr1A 585040692 585041265 573 False 440.000000 440 80.589000 2 575 1 chr1A.!!$F1 573
18 TraesCS5D01G031700 chr7B 511422586 511423143 557 False 435.000000 435 80.927000 21 575 1 chr7B.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 92 0.106719 AGCCGTATTGTTGGGATGGG 60.107 55.0 0.00 0.0 0.00 4.00 F
339 344 0.242825 CTCCAACGTCTTAGTCGGCA 59.757 55.0 3.83 0.0 0.00 5.69 F
1544 1786 0.604578 TTTCTTGCTTGGCAGATGGC 59.395 50.0 0.00 0.0 40.61 4.40 F
2385 3014 0.736636 ATGCATGCATGACCTCAACG 59.263 50.0 31.74 0.2 35.03 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1778 0.179073 ACGTGGTATCAGCCATCTGC 60.179 55.0 0.00 0.0 41.08 4.26 R
1733 2113 0.673022 GAGGCGGCTGGATCATCATC 60.673 60.0 19.63 0.0 0.00 2.92 R
2418 3172 0.598419 GGCTGCTCACAAAGGCAAAC 60.598 55.0 0.00 0.0 38.76 2.93 R
3668 5990 2.514458 ACCTAACCATTTGAGGCAGG 57.486 50.0 0.00 0.0 39.14 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.493747 CTTCCCCGACGAGGCGAC 62.494 72.222 0.00 0.00 39.21 5.19
90 92 0.106719 AGCCGTATTGTTGGGATGGG 60.107 55.000 0.00 0.00 0.00 4.00
113 115 5.474825 GTTTGGAAACCAGTTTGTTCAAGA 58.525 37.500 0.00 0.00 33.81 3.02
130 135 3.087031 CAAGAAAGGATGATGTGGCAGT 58.913 45.455 0.00 0.00 0.00 4.40
149 154 4.451150 GCGGCATCCTCGTGGTGA 62.451 66.667 2.99 0.00 34.23 4.02
168 173 0.830444 AACGTGTGTCCTAGGGCTCA 60.830 55.000 15.92 14.92 0.00 4.26
171 176 1.079256 TGTGTCCTAGGGCTCAGCT 59.921 57.895 15.92 0.00 0.00 4.24
174 179 0.972983 TGTCCTAGGGCTCAGCTGTC 60.973 60.000 15.92 6.89 0.00 3.51
179 184 4.521062 GGGCTCAGCTGTCGCGAT 62.521 66.667 14.06 0.00 42.32 4.58
194 199 1.868997 CGATGGCGTTTGCTCAAGT 59.131 52.632 0.00 0.00 42.25 3.16
281 286 0.734889 GAAGATGGCGGATTGTGTGG 59.265 55.000 0.00 0.00 0.00 4.17
285 290 2.033448 GGCGGATTGTGTGGTGGA 59.967 61.111 0.00 0.00 0.00 4.02
296 301 0.470341 TGTGGTGGATTCGTGGTTCA 59.530 50.000 0.00 0.00 0.00 3.18
304 309 2.643551 GATTCGTGGTTCATGGATGGT 58.356 47.619 0.00 0.00 0.00 3.55
306 311 3.924114 TTCGTGGTTCATGGATGGTAT 57.076 42.857 0.00 0.00 0.00 2.73
337 342 1.132643 CTCCTCCAACGTCTTAGTCGG 59.867 57.143 3.83 0.00 0.00 4.79
338 343 0.458025 CCTCCAACGTCTTAGTCGGC 60.458 60.000 3.83 0.00 0.00 5.54
339 344 0.242825 CTCCAACGTCTTAGTCGGCA 59.757 55.000 3.83 0.00 0.00 5.69
417 423 4.213270 TCGTTCAGTGTTGATGATTTCACC 59.787 41.667 0.00 0.00 32.84 4.02
486 492 0.737367 CCGCATCAAGCTCGACTGAA 60.737 55.000 0.00 0.00 42.61 3.02
488 494 1.719600 GCATCAAGCTCGACTGAAGT 58.280 50.000 0.00 0.00 41.15 3.01
503 509 3.513912 ACTGAAGTGGTGATCCGTCATTA 59.486 43.478 0.00 0.00 36.60 1.90
516 522 6.432783 TGATCCGTCATTATTTTCTTTGGTGT 59.567 34.615 0.00 0.00 0.00 4.16
517 523 7.608376 TGATCCGTCATTATTTTCTTTGGTGTA 59.392 33.333 0.00 0.00 0.00 2.90
531 537 4.769345 TTGGTGTATGCTATGATGGTGA 57.231 40.909 0.00 0.00 0.00 4.02
546 552 2.750814 TGGTGACAGAGGCAGATGATA 58.249 47.619 0.00 0.00 35.01 2.15
547 553 3.106827 TGGTGACAGAGGCAGATGATAA 58.893 45.455 0.00 0.00 35.01 1.75
581 587 1.202475 GCTCAGAGGGTTCTTCGATCC 60.202 57.143 0.00 0.00 0.00 3.36
626 640 5.643777 TCTCTTTGTGTAAAGGCTAGCATTC 59.356 40.000 15.97 4.42 42.81 2.67
627 641 4.700213 TCTTTGTGTAAAGGCTAGCATTCC 59.300 41.667 15.97 9.70 42.81 3.01
629 643 2.235155 TGTGTAAAGGCTAGCATTCCGA 59.765 45.455 15.97 1.08 0.00 4.55
683 705 2.974148 AAAAACGGCCGGACGACC 60.974 61.111 41.17 12.02 37.61 4.79
744 767 2.231820 GTCCGAAACAACAGGACCG 58.768 57.895 2.66 0.00 46.40 4.79
767 790 2.259204 CGTCCACGGAAAGGCGTA 59.741 61.111 0.00 0.00 35.37 4.42
859 882 1.067635 CATGGTTTTGCTCCTTTCCCG 60.068 52.381 0.00 0.00 0.00 5.14
861 884 1.179174 GGTTTTGCTCCTTTCCCGCT 61.179 55.000 0.00 0.00 0.00 5.52
920 1060 1.152333 GCTTCCCCCACCACCTTTT 60.152 57.895 0.00 0.00 0.00 2.27
935 1075 2.907042 ACCTTTTCTCTCCATCGTCCTT 59.093 45.455 0.00 0.00 0.00 3.36
937 1077 3.196685 CCTTTTCTCTCCATCGTCCTTCT 59.803 47.826 0.00 0.00 0.00 2.85
968 1111 4.455190 CAGCTCTTTCTTTCTTCCTTCCTG 59.545 45.833 0.00 0.00 0.00 3.86
971 1114 3.138283 TCTTTCTTTCTTCCTTCCTGCCA 59.862 43.478 0.00 0.00 0.00 4.92
1082 1231 4.021925 GGCGGCCAAGACCAGAGT 62.022 66.667 15.62 0.00 0.00 3.24
1086 1235 2.529744 GGCCAAGACCAGAGTGGGT 61.530 63.158 0.00 0.00 43.37 4.51
1282 1460 1.173043 GTTCAAATGCGGTGGATCCA 58.827 50.000 11.44 11.44 35.57 3.41
1285 1467 3.289407 TCAAATGCGGTGGATCCATAA 57.711 42.857 19.62 4.36 35.57 1.90
1305 1487 6.312426 CCATAAACTGACTCACTCAAGATGAC 59.688 42.308 0.00 0.00 0.00 3.06
1309 1491 3.902150 TGACTCACTCAAGATGACGAAC 58.098 45.455 0.00 0.00 0.00 3.95
1323 1506 2.792674 TGACGAACGATGTTGTGTTCTC 59.207 45.455 0.14 2.07 41.74 2.87
1331 1514 3.428534 CGATGTTGTGTTCTCGATTGACA 59.571 43.478 0.00 0.00 33.07 3.58
1337 1549 6.366061 TGTTGTGTTCTCGATTGACAGAATAG 59.634 38.462 8.17 0.00 31.35 1.73
1340 1552 7.599171 TGTGTTCTCGATTGACAGAATAGTTA 58.401 34.615 0.00 0.00 31.35 2.24
1419 1633 6.321181 ACATGAGATTCTTCAGGACTAGAGAC 59.679 42.308 0.00 0.00 33.38 3.36
1423 1640 8.055790 TGAGATTCTTCAGGACTAGAGACAATA 58.944 37.037 0.00 0.00 0.00 1.90
1491 1719 2.742053 TGACAATTTCTCGGTAAGCAGC 59.258 45.455 0.00 0.00 0.00 5.25
1494 1726 3.058224 ACAATTTCTCGGTAAGCAGCAAC 60.058 43.478 0.00 0.00 0.00 4.17
1495 1727 1.519408 TTTCTCGGTAAGCAGCAACC 58.481 50.000 6.84 6.84 0.00 3.77
1500 1732 3.006940 CTCGGTAAGCAGCAACCAAATA 58.993 45.455 15.29 0.00 35.35 1.40
1501 1733 3.616219 TCGGTAAGCAGCAACCAAATAT 58.384 40.909 15.29 0.00 35.35 1.28
1536 1778 7.775397 TCTCAATTTTCTTTTTCTTGCTTGG 57.225 32.000 0.00 0.00 0.00 3.61
1544 1786 0.604578 TTTCTTGCTTGGCAGATGGC 59.395 50.000 0.00 0.00 40.61 4.40
1547 1789 0.963856 CTTGCTTGGCAGATGGCTGA 60.964 55.000 7.95 0.00 45.17 4.26
1570 1944 8.330466 TGATACCACGTAAAAATGAATCACTT 57.670 30.769 0.00 0.00 0.00 3.16
1603 1983 4.041740 ACCGTTTCTTTTTCTTGCTTCC 57.958 40.909 0.00 0.00 0.00 3.46
1717 2097 5.227391 CGGATCGATGCATATAAAGTCGTAC 59.773 44.000 17.54 0.00 34.24 3.67
1732 2112 2.125961 GTACGACTGGGCCGATCCT 61.126 63.158 0.00 0.00 34.39 3.24
1733 2113 2.125326 TACGACTGGGCCGATCCTG 61.125 63.158 0.00 0.00 34.39 3.86
1734 2114 2.561467 TACGACTGGGCCGATCCTGA 62.561 60.000 0.00 0.00 34.39 3.86
1798 2205 2.040012 TCCGAGCCATCCTACCTAGTAG 59.960 54.545 0.00 0.00 36.04 2.57
1912 2348 1.680522 ATGATCTCTTCACGGCGCCT 61.681 55.000 26.68 8.92 37.11 5.52
2110 2560 6.990939 TGGCAATCTTGATCTCAGAAATCTAG 59.009 38.462 0.00 0.00 0.00 2.43
2120 2570 9.076781 TGATCTCAGAAATCTAGTCCAGATAAG 57.923 37.037 0.00 0.00 43.56 1.73
2176 2632 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2177 2633 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
2178 2634 3.036091 CTCCCTCCGTTCCCAAATACTA 58.964 50.000 0.00 0.00 0.00 1.82
2204 2660 8.753497 AAGTCTTTTTAGAGATTCCAACAAGT 57.247 30.769 0.00 0.00 0.00 3.16
2205 2661 8.159344 AGTCTTTTTAGAGATTCCAACAAGTG 57.841 34.615 0.00 0.00 0.00 3.16
2227 2683 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2228 2684 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2229 2685 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2238 2694 5.295292 CGGAGCAAAATGAGTGTGAATCTAT 59.705 40.000 0.00 0.00 0.00 1.98
2288 2744 8.729756 TCTGTATGTTGTAGTCCATTTGAAATG 58.270 33.333 10.84 10.84 0.00 2.32
2321 2825 7.500434 AGACATATATTTAGGAAGGGAGGGAT 58.500 38.462 0.00 0.00 0.00 3.85
2332 2922 4.384318 GGAAGGGAGGGATTAGTTCTGAAC 60.384 50.000 12.54 12.54 0.00 3.18
2334 2963 4.439860 AGGGAGGGATTAGTTCTGAACTT 58.560 43.478 26.33 11.16 42.81 2.66
2342 2971 5.163581 GGATTAGTTCTGAACTTGCATGCAT 60.164 40.000 26.33 6.60 42.81 3.96
2343 2972 5.710513 TTAGTTCTGAACTTGCATGCATT 57.289 34.783 26.33 14.25 42.81 3.56
2373 3002 4.096833 TGAACTATCACTGGAAATGCATGC 59.903 41.667 11.82 11.82 0.00 4.06
2374 3003 3.623703 ACTATCACTGGAAATGCATGCA 58.376 40.909 25.04 25.04 0.00 3.96
2375 3004 4.212716 ACTATCACTGGAAATGCATGCAT 58.787 39.130 27.46 27.46 38.46 3.96
2376 3005 2.951457 TCACTGGAAATGCATGCATG 57.049 45.000 32.79 22.70 36.68 4.06
2377 3006 2.448453 TCACTGGAAATGCATGCATGA 58.552 42.857 32.79 22.01 36.68 3.07
2378 3007 2.164827 TCACTGGAAATGCATGCATGAC 59.835 45.455 32.79 26.16 36.68 3.06
2380 3009 1.754803 CTGGAAATGCATGCATGACCT 59.245 47.619 34.89 21.50 36.68 3.85
2381 3010 1.752498 TGGAAATGCATGCATGACCTC 59.248 47.619 34.89 26.89 36.68 3.85
2382 3011 1.752498 GGAAATGCATGCATGACCTCA 59.248 47.619 32.79 18.09 36.68 3.86
2384 3013 2.953466 AATGCATGCATGACCTCAAC 57.047 45.000 32.79 10.88 36.68 3.18
2385 3014 0.736636 ATGCATGCATGACCTCAACG 59.263 50.000 31.74 0.20 35.03 4.10
2387 3016 1.026182 GCATGCATGACCTCAACGGA 61.026 55.000 30.64 0.00 36.31 4.69
2388 3017 1.012086 CATGCATGACCTCAACGGAG 58.988 55.000 22.59 0.00 41.02 4.63
2412 3166 9.971922 GAGGGATTATATTTTCACCATCAAAAG 57.028 33.333 0.00 0.00 0.00 2.27
2420 3174 6.463995 TTTTCACCATCAAAAGCAGTAGTT 57.536 33.333 0.00 0.00 0.00 2.24
2422 3176 5.437289 TCACCATCAAAAGCAGTAGTTTG 57.563 39.130 0.00 0.00 36.30 2.93
2423 3177 3.983344 CACCATCAAAAGCAGTAGTTTGC 59.017 43.478 0.00 0.00 44.41 3.68
2424 3178 3.005791 ACCATCAAAAGCAGTAGTTTGCC 59.994 43.478 0.00 0.00 45.18 4.52
2425 3179 3.256631 CCATCAAAAGCAGTAGTTTGCCT 59.743 43.478 0.00 0.00 45.18 4.75
2439 3195 3.376918 GCCTTTGTGAGCAGCCCC 61.377 66.667 0.00 0.00 0.00 5.80
2499 3442 4.400884 CCTGCAGCCTATAGGTAGTATCTG 59.599 50.000 20.10 16.76 37.57 2.90
2539 3482 2.306805 ACTCTCCATTTGCATCCTGTGA 59.693 45.455 0.00 0.00 0.00 3.58
2585 3918 3.948196 GTGTAAGCACACGGTTTTACA 57.052 42.857 0.00 0.00 45.27 2.41
2593 3931 2.281622 CGGTTTTACACCCCCGCA 60.282 61.111 0.00 0.00 43.83 5.69
2627 4040 5.475564 ACCACTTGTACATAAACCATGTTCC 59.524 40.000 0.00 0.00 46.01 3.62
2639 4052 6.642707 AAACCATGTTCCGAATGAAACTAA 57.357 33.333 0.00 0.00 33.94 2.24
2689 4158 2.263895 ATGTAGCTACCTTCACCCCA 57.736 50.000 21.01 0.00 0.00 4.96
2695 4168 2.160205 GCTACCTTCACCCCAAAAGAC 58.840 52.381 0.00 0.00 0.00 3.01
2796 4273 9.667107 TTTAATTACAGCTAGCTGATTACACTT 57.333 29.630 43.42 27.04 46.30 3.16
2882 4389 1.009389 CGTGGCTGAAAGAGGTCGAC 61.009 60.000 7.13 7.13 34.07 4.20
2912 5153 2.005451 GATCTGAAGATGTGCAGCGTT 58.995 47.619 0.00 0.00 34.37 4.84
2918 5159 0.175760 AGATGTGCAGCGTTCGGTAT 59.824 50.000 0.00 0.00 0.00 2.73
2921 5162 1.740296 GTGCAGCGTTCGGTATGGT 60.740 57.895 0.00 0.00 0.00 3.55
2953 5194 0.904865 TCCGACAGGTGATTGAGCCT 60.905 55.000 0.00 0.00 39.05 4.58
2957 5198 0.247736 ACAGGTGATTGAGCCTCGAC 59.752 55.000 0.00 0.00 31.73 4.20
2958 5199 0.803768 CAGGTGATTGAGCCTCGACG 60.804 60.000 0.00 0.00 31.73 5.12
3000 5281 2.574450 TGATGAGCAGCTCAAACAACA 58.426 42.857 28.78 18.83 44.04 3.33
3004 5285 2.689471 TGAGCAGCTCAAACAACACAAT 59.311 40.909 23.41 0.00 37.57 2.71
3065 5354 2.011540 AAGCTAGCTAGTTCAACCGC 57.988 50.000 19.70 5.95 0.00 5.68
3167 5462 0.887836 CAGCAGCTGTGTGTGTGGAT 60.888 55.000 16.64 0.00 0.00 3.41
3194 5494 6.778821 TGTCCAGATCCTTTGTTGATCTTTA 58.221 36.000 0.18 0.00 45.07 1.85
3236 5540 4.766404 AGATTTCACTTTTACTTGGCCG 57.234 40.909 0.00 0.00 0.00 6.13
3289 5593 1.521580 GCATGCTCTGCCCTATTCTC 58.478 55.000 11.37 0.00 45.66 2.87
3291 5595 2.486907 GCATGCTCTGCCCTATTCTCTT 60.487 50.000 11.37 0.00 45.66 2.85
3315 5621 9.455847 CTTTCAAATTTGAGATTCTTTCGTTCT 57.544 29.630 19.64 0.00 38.61 3.01
3350 5660 1.071699 TCTCGCACTACTTGGCCTTTT 59.928 47.619 3.32 0.00 0.00 2.27
3355 5665 3.670627 CGCACTACTTGGCCTTTTGATTC 60.671 47.826 3.32 0.00 0.00 2.52
3416 5732 8.631480 TTCTTTAAATTTTCCTACTGTCTCCC 57.369 34.615 0.00 0.00 0.00 4.30
3422 5738 6.848562 ATTTTCCTACTGTCTCCCCATATT 57.151 37.500 0.00 0.00 0.00 1.28
3509 5825 7.147497 ACCTACATGTTTCCACATATCTCATGA 60.147 37.037 2.30 0.00 42.14 3.07
3513 5829 7.613022 ACATGTTTCCACATATCTCATGAACTT 59.387 33.333 0.00 0.00 42.14 2.66
3514 5830 8.464404 CATGTTTCCACATATCTCATGAACTTT 58.536 33.333 0.00 0.00 42.14 2.66
3515 5831 8.044060 TGTTTCCACATATCTCATGAACTTTC 57.956 34.615 0.00 0.00 0.00 2.62
3516 5832 7.665145 TGTTTCCACATATCTCATGAACTTTCA 59.335 33.333 0.00 0.00 42.14 2.69
3517 5833 8.514594 GTTTCCACATATCTCATGAACTTTCAA 58.485 33.333 0.00 0.00 41.13 2.69
3519 5835 8.812513 TCCACATATCTCATGAACTTTCAATT 57.187 30.769 0.00 0.00 41.13 2.32
3520 5836 9.246670 TCCACATATCTCATGAACTTTCAATTT 57.753 29.630 0.00 0.00 41.13 1.82
3658 5978 9.559958 CAAAGTCATCTTTTTATATGTGTCACC 57.440 33.333 0.00 0.00 41.31 4.02
3686 6008 2.514458 ACCTGCCTCAAATGGTTAGG 57.486 50.000 0.00 0.00 38.58 2.69
3692 6014 4.196193 TGCCTCAAATGGTTAGGTATTCG 58.804 43.478 0.00 0.00 32.67 3.34
3710 6032 6.695713 GGTATTCGAAAATATTGGTTGAAGGC 59.304 38.462 0.00 4.27 30.28 4.35
3744 6066 4.030306 CGCAGTCATACTCGTTAAGTTCAC 59.970 45.833 0.00 0.00 39.55 3.18
3758 6080 6.094325 CGTTAAGTTCACAATATGGGGCTAAA 59.906 38.462 0.00 0.00 0.00 1.85
3760 6082 8.474831 GTTAAGTTCACAATATGGGGCTAAAAT 58.525 33.333 0.00 0.00 0.00 1.82
3761 6083 9.702253 TTAAGTTCACAATATGGGGCTAAAATA 57.298 29.630 0.00 0.00 0.00 1.40
3919 6242 8.724229 ACGTCCACAAAATTACTTAAATAGACC 58.276 33.333 0.00 0.00 0.00 3.85
3920 6243 7.901377 CGTCCACAAAATTACTTAAATAGACCG 59.099 37.037 0.00 0.00 0.00 4.79
3921 6244 8.724229 GTCCACAAAATTACTTAAATAGACCGT 58.276 33.333 0.00 0.00 0.00 4.83
3922 6245 9.941325 TCCACAAAATTACTTAAATAGACCGTA 57.059 29.630 0.00 0.00 0.00 4.02
3940 6263 8.260270 AGACCGTAAAAATCAATTACTACCAC 57.740 34.615 0.00 0.00 32.35 4.16
3941 6264 8.098912 AGACCGTAAAAATCAATTACTACCACT 58.901 33.333 0.00 0.00 32.35 4.00
3942 6265 8.036273 ACCGTAAAAATCAATTACTACCACTG 57.964 34.615 0.00 0.00 32.35 3.66
3943 6266 7.662669 ACCGTAAAAATCAATTACTACCACTGT 59.337 33.333 0.00 0.00 32.35 3.55
3944 6267 9.153721 CCGTAAAAATCAATTACTACCACTGTA 57.846 33.333 0.00 0.00 32.35 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.362889 CCCCGCCAAAGCCAAGAT 60.363 61.111 0.00 0.00 34.57 2.40
32 33 7.782168 GGGGAAGGATCTGAAGAATCTTTATTT 59.218 37.037 0.00 0.00 0.00 1.40
69 70 1.024271 CATCCCAACAATACGGCTGG 58.976 55.000 0.00 0.00 0.00 4.85
73 74 2.137810 AACCCATCCCAACAATACGG 57.862 50.000 0.00 0.00 0.00 4.02
75 76 3.436243 TCCAAACCCATCCCAACAATAC 58.564 45.455 0.00 0.00 0.00 1.89
79 80 2.043227 GTTTCCAAACCCATCCCAACA 58.957 47.619 0.00 0.00 32.82 3.33
90 92 5.474825 TCTTGAACAAACTGGTTTCCAAAC 58.525 37.500 0.00 0.00 38.17 2.93
104 106 4.022068 GCCACATCATCCTTTCTTGAACAA 60.022 41.667 0.00 0.00 0.00 2.83
113 115 1.843368 CCACTGCCACATCATCCTTT 58.157 50.000 0.00 0.00 0.00 3.11
149 154 0.830444 TGAGCCCTAGGACACACGTT 60.830 55.000 11.48 0.00 0.00 3.99
152 157 1.219393 GCTGAGCCCTAGGACACAC 59.781 63.158 11.48 0.00 0.00 3.82
179 184 0.746204 TGACACTTGAGCAAACGCCA 60.746 50.000 0.00 0.00 0.00 5.69
191 196 2.292267 CCAAGCTTCACACTGACACTT 58.708 47.619 0.00 0.00 0.00 3.16
194 199 0.836606 TCCCAAGCTTCACACTGACA 59.163 50.000 0.00 0.00 0.00 3.58
245 250 2.141517 CTTCCAGATGTCATCGATGCC 58.858 52.381 20.81 10.37 0.00 4.40
281 286 2.107950 TCCATGAACCACGAATCCAC 57.892 50.000 0.00 0.00 0.00 4.02
285 290 2.806945 ACCATCCATGAACCACGAAT 57.193 45.000 0.00 0.00 0.00 3.34
296 301 3.269381 AGGAAACCACACATACCATCCAT 59.731 43.478 0.00 0.00 0.00 3.41
304 309 2.626785 TGGAGGAGGAAACCACACATA 58.373 47.619 0.00 0.00 0.00 2.29
306 311 1.133915 GTTGGAGGAGGAAACCACACA 60.134 52.381 0.00 0.00 33.20 3.72
337 342 1.222936 CCAGATCTGACACCCCTGC 59.777 63.158 24.62 0.00 0.00 4.85
338 343 0.829333 CTCCAGATCTGACACCCCTG 59.171 60.000 24.62 4.68 0.00 4.45
339 344 0.415429 ACTCCAGATCTGACACCCCT 59.585 55.000 24.62 0.00 0.00 4.79
474 480 1.040646 TCACCACTTCAGTCGAGCTT 58.959 50.000 0.00 0.00 0.00 3.74
486 492 5.745227 AGAAAATAATGACGGATCACCACT 58.255 37.500 0.00 0.00 37.79 4.00
488 494 6.127758 CCAAAGAAAATAATGACGGATCACCA 60.128 38.462 0.00 0.00 37.79 4.17
503 509 7.342799 ACCATCATAGCATACACCAAAGAAAAT 59.657 33.333 0.00 0.00 0.00 1.82
516 522 3.007290 GCCTCTGTCACCATCATAGCATA 59.993 47.826 0.00 0.00 0.00 3.14
517 523 2.224475 GCCTCTGTCACCATCATAGCAT 60.224 50.000 0.00 0.00 0.00 3.79
531 537 4.833478 AACACTTATCATCTGCCTCTGT 57.167 40.909 0.00 0.00 0.00 3.41
541 547 5.764686 TGAGCTTGACACAAACACTTATCAT 59.235 36.000 0.00 0.00 0.00 2.45
546 552 3.609853 TCTGAGCTTGACACAAACACTT 58.390 40.909 0.00 0.00 0.00 3.16
547 553 3.201290 CTCTGAGCTTGACACAAACACT 58.799 45.455 0.00 0.00 0.00 3.55
596 602 6.524101 AGCCTTTACACAAAGAGAAACAAA 57.476 33.333 0.00 0.00 43.32 2.83
599 605 5.238650 TGCTAGCCTTTACACAAAGAGAAAC 59.761 40.000 13.29 0.00 43.32 2.78
602 608 4.617253 TGCTAGCCTTTACACAAAGAGA 57.383 40.909 13.29 0.00 43.32 3.10
603 609 5.163713 GGAATGCTAGCCTTTACACAAAGAG 60.164 44.000 13.29 0.00 43.32 2.85
626 640 4.815269 TGGTAAAATTGAAAAGGCATCGG 58.185 39.130 0.00 0.00 0.00 4.18
627 641 4.864247 CCTGGTAAAATTGAAAAGGCATCG 59.136 41.667 0.00 0.00 0.00 3.84
629 643 5.823861 ACCTGGTAAAATTGAAAAGGCAT 57.176 34.783 0.00 0.00 0.00 4.40
704 726 1.200020 GATCGGTGCAAAGGAAACCAG 59.800 52.381 0.00 0.00 33.30 4.00
767 790 2.427245 CGAATCCAGGGACGGCTCT 61.427 63.158 0.00 0.00 0.00 4.09
920 1060 2.239907 TCAGAGAAGGACGATGGAGAGA 59.760 50.000 0.00 0.00 0.00 3.10
935 1075 5.716228 AGAAAGAAAGAGCTGAGATCAGAGA 59.284 40.000 13.98 0.00 46.59 3.10
937 1077 5.999205 AGAAAGAAAGAGCTGAGATCAGA 57.001 39.130 13.98 0.00 46.59 3.27
989 1132 2.922950 GCGCCCATCGGTCGGTATA 61.923 63.158 0.00 0.00 38.94 1.47
1282 1460 6.071896 TCGTCATCTTGAGTGAGTCAGTTTAT 60.072 38.462 1.05 0.00 36.21 1.40
1285 1467 3.570125 TCGTCATCTTGAGTGAGTCAGTT 59.430 43.478 1.05 0.00 36.21 3.16
1305 1487 2.048498 TCGAGAACACAACATCGTTCG 58.952 47.619 0.00 0.00 44.94 3.95
1309 1491 3.428534 TGTCAATCGAGAACACAACATCG 59.571 43.478 0.00 0.00 36.54 3.84
1323 1506 9.698309 AGATAACCATAACTATTCTGTCAATCG 57.302 33.333 0.00 0.00 0.00 3.34
1337 1549 7.661968 TCTGTCTGCAGATAGATAACCATAAC 58.338 38.462 32.21 11.49 45.94 1.89
1419 1633 1.035385 GGTTCCCTTGGGCCGTATTG 61.035 60.000 0.00 0.00 0.00 1.90
1491 1719 5.909477 AGATTGGACATGCATATTTGGTTG 58.091 37.500 0.00 0.00 0.00 3.77
1494 1726 5.777850 TGAGATTGGACATGCATATTTGG 57.222 39.130 0.00 0.00 0.00 3.28
1495 1727 8.657074 AAATTGAGATTGGACATGCATATTTG 57.343 30.769 0.00 0.00 0.00 2.32
1500 1732 6.540438 AGAAAATTGAGATTGGACATGCAT 57.460 33.333 0.00 0.00 0.00 3.96
1501 1733 5.988310 AGAAAATTGAGATTGGACATGCA 57.012 34.783 0.00 0.00 0.00 3.96
1536 1778 0.179073 ACGTGGTATCAGCCATCTGC 60.179 55.000 0.00 0.00 41.08 4.26
1544 1786 7.974675 AGTGATTCATTTTTACGTGGTATCAG 58.025 34.615 0.00 0.00 0.00 2.90
1547 1789 8.106247 ACAAGTGATTCATTTTTACGTGGTAT 57.894 30.769 0.00 0.00 0.00 2.73
1570 1944 3.547054 AGAAACGGTCACCAACTTACA 57.453 42.857 0.00 0.00 0.00 2.41
1603 1983 3.937706 GGAACAAGATGACCATCTGTGAG 59.062 47.826 12.73 6.81 46.75 3.51
1717 2097 2.502492 ATCAGGATCGGCCCAGTCG 61.502 63.158 0.00 0.00 37.37 4.18
1726 2106 2.619147 GCTGGATCATCATCAGGATCG 58.381 52.381 0.00 0.00 40.61 3.69
1732 2112 1.071987 GGCGGCTGGATCATCATCA 59.928 57.895 0.00 0.00 0.00 3.07
1733 2113 0.673022 GAGGCGGCTGGATCATCATC 60.673 60.000 19.63 0.00 0.00 2.92
1734 2114 1.374190 GAGGCGGCTGGATCATCAT 59.626 57.895 19.63 0.00 0.00 2.45
1826 2258 3.430236 GCCCCAACTTTATAGCGCATTTT 60.430 43.478 11.47 0.00 0.00 1.82
1840 2272 1.720781 AAAGCAATCAAGCCCCAACT 58.279 45.000 0.00 0.00 34.23 3.16
1912 2348 1.593209 GAGGACCGACGTGTTGCAA 60.593 57.895 0.00 0.00 0.00 4.08
2110 2560 8.554528 CATGTTCATGATGTTACTTATCTGGAC 58.445 37.037 6.94 0.00 0.00 4.02
2120 2570 5.066893 AGTCCATGCATGTTCATGATGTTAC 59.933 40.000 24.58 13.76 44.94 2.50
2178 2634 9.190317 ACTTGTTGGAATCTCTAAAAAGACTTT 57.810 29.630 9.03 0.00 35.06 2.66
2199 2655 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2200 2656 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2202 2658 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2203 2659 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2204 2660 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2205 2661 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2264 2720 8.402798 ACATTTCAAATGGACTACAACATACA 57.597 30.769 14.70 0.00 0.00 2.29
2274 2730 8.912988 TGTCTTTTTAGACATTTCAAATGGACT 58.087 29.630 14.70 14.18 43.09 3.85
2300 2803 9.875725 AACTAATCCCTCCCTTCCTAAATATAT 57.124 33.333 0.00 0.00 0.00 0.86
2313 2817 4.518249 CAAGTTCAGAACTAATCCCTCCC 58.482 47.826 16.46 0.00 41.91 4.30
2321 2825 5.241285 TGAATGCATGCAAGTTCAGAACTAA 59.759 36.000 25.60 7.87 41.91 2.24
2332 2922 3.291809 TCACAGTTGAATGCATGCAAG 57.708 42.857 26.68 12.34 0.00 4.01
2334 2963 2.624364 AGTTCACAGTTGAATGCATGCA 59.376 40.909 25.04 25.04 43.72 3.96
2380 3009 6.059484 GGTGAAAATATAATCCCTCCGTTGA 58.941 40.000 0.00 0.00 0.00 3.18
2381 3010 5.825679 TGGTGAAAATATAATCCCTCCGTTG 59.174 40.000 0.00 0.00 0.00 4.10
2382 3011 6.008696 TGGTGAAAATATAATCCCTCCGTT 57.991 37.500 0.00 0.00 0.00 4.44
2384 3013 6.237901 TGATGGTGAAAATATAATCCCTCCG 58.762 40.000 0.00 0.00 0.00 4.63
2385 3014 8.477419 TTTGATGGTGAAAATATAATCCCTCC 57.523 34.615 0.00 0.00 0.00 4.30
2387 3016 8.424133 GCTTTTGATGGTGAAAATATAATCCCT 58.576 33.333 0.00 0.00 0.00 4.20
2388 3017 8.203485 TGCTTTTGATGGTGAAAATATAATCCC 58.797 33.333 0.00 0.00 0.00 3.85
2390 3019 9.807649 ACTGCTTTTGATGGTGAAAATATAATC 57.192 29.630 0.00 0.00 0.00 1.75
2394 3023 8.353423 ACTACTGCTTTTGATGGTGAAAATAT 57.647 30.769 0.00 0.00 0.00 1.28
2395 3024 7.759489 ACTACTGCTTTTGATGGTGAAAATA 57.241 32.000 0.00 0.00 0.00 1.40
2396 3025 6.655078 ACTACTGCTTTTGATGGTGAAAAT 57.345 33.333 0.00 0.00 0.00 1.82
2400 3153 4.261572 GCAAACTACTGCTTTTGATGGTGA 60.262 41.667 0.00 0.00 39.34 4.02
2412 3166 2.605580 GCTCACAAAGGCAAACTACTGC 60.606 50.000 0.00 0.00 41.85 4.40
2418 3172 0.598419 GGCTGCTCACAAAGGCAAAC 60.598 55.000 0.00 0.00 38.76 2.93
2420 3174 2.202395 GGGCTGCTCACAAAGGCAA 61.202 57.895 0.00 0.00 40.58 4.52
2422 3176 3.376918 GGGGCTGCTCACAAAGGC 61.377 66.667 0.21 0.00 38.21 4.35
2423 3177 2.677875 GGGGGCTGCTCACAAAGG 60.678 66.667 0.21 0.00 0.00 3.11
2424 3178 1.975407 CAGGGGGCTGCTCACAAAG 60.975 63.158 3.79 0.00 0.00 2.77
2425 3179 2.005606 TTCAGGGGGCTGCTCACAAA 62.006 55.000 3.79 0.00 0.00 2.83
2439 3195 2.168106 CAGACCTCTCTCCACATTCAGG 59.832 54.545 0.00 0.00 0.00 3.86
2499 3442 6.147328 GGAGAGTGTGTACCATAAACAAAGAC 59.853 42.308 0.00 0.00 0.00 3.01
2520 3463 3.084039 GTTCACAGGATGCAAATGGAGA 58.916 45.455 0.00 0.00 42.53 3.71
2585 3918 3.122727 TTTCGAAACCTGCGGGGGT 62.123 57.895 18.00 2.05 42.05 4.95
2627 4040 3.682858 ACATGGACGGTTAGTTTCATTCG 59.317 43.478 0.00 0.00 0.00 3.34
2639 4052 2.367567 ACTGTTCTACAACATGGACGGT 59.632 45.455 0.00 0.00 41.82 4.83
2689 4158 4.010349 CGAAGGAGCCCTAAATGTCTTTT 58.990 43.478 0.00 0.00 31.13 2.27
2695 4168 1.811941 GCCTCGAAGGAGCCCTAAATG 60.812 57.143 5.24 0.00 37.67 2.32
2796 4273 7.070074 ACAAATCATTTAACCTTGGGTTACACA 59.930 33.333 8.47 0.00 46.28 3.72
2814 4294 7.487822 TTCAGTAGAAGAGGAGACAAATCAT 57.512 36.000 0.00 0.00 0.00 2.45
2882 4389 0.755079 TCTTCAGATCCCTCGGCATG 59.245 55.000 0.00 0.00 0.00 4.06
2929 5170 1.757118 TCAATCACCTGTCGGAGATCC 59.243 52.381 0.00 0.00 39.34 3.36
2968 5233 2.602211 CTGCTCATCATCAGTCGTGAAC 59.398 50.000 0.00 0.00 35.88 3.18
2977 5242 3.062122 TGTTTGAGCTGCTCATCATCA 57.938 42.857 30.80 22.23 40.39 3.07
3000 5281 6.748333 ACGATTTGACATCATCTTGATTGT 57.252 33.333 0.00 0.00 34.28 2.71
3004 5285 6.878923 AGGTAAACGATTTGACATCATCTTGA 59.121 34.615 0.00 0.00 0.00 3.02
3065 5354 3.607078 GCACAAACTGAAACCTAAGCTCG 60.607 47.826 0.00 0.00 0.00 5.03
3167 5462 4.705110 TCAACAAAGGATCTGGACAAGA 57.295 40.909 0.00 0.00 39.94 3.02
3289 5593 9.455847 AGAACGAAAGAATCTCAAATTTGAAAG 57.544 29.630 20.82 11.11 36.64 2.62
3291 5595 9.236691 CAAGAACGAAAGAATCTCAAATTTGAA 57.763 29.630 20.82 12.56 36.64 2.69
3309 5615 5.566469 AGAAATATGGGGAAACAAGAACGA 58.434 37.500 0.00 0.00 0.00 3.85
3315 5621 3.442273 GTGCGAGAAATATGGGGAAACAA 59.558 43.478 0.00 0.00 0.00 2.83
3412 5728 5.896073 AGTAGTCCAAGAAATATGGGGAG 57.104 43.478 0.00 0.00 38.54 4.30
3416 5732 5.440610 AGCCAAGTAGTCCAAGAAATATGG 58.559 41.667 0.00 0.00 39.41 2.74
3422 5738 4.787551 TGAAAAGCCAAGTAGTCCAAGAA 58.212 39.130 0.00 0.00 0.00 2.52
3575 5894 7.706179 CAGCAAATGACAGAAAAGAAAGGTAAA 59.294 33.333 0.00 0.00 0.00 2.01
3577 5896 6.545666 TCAGCAAATGACAGAAAAGAAAGGTA 59.454 34.615 0.00 0.00 31.12 3.08
3603 5923 9.394477 CAAATAAGCATATGACATGATGACAAG 57.606 33.333 6.97 0.00 0.00 3.16
3663 5983 4.040339 CCTAACCATTTGAGGCAGGTTTTT 59.960 41.667 0.00 0.00 41.33 1.94
3668 5990 2.514458 ACCTAACCATTTGAGGCAGG 57.486 50.000 0.00 0.00 39.14 4.85
3670 5992 4.080807 TCGAATACCTAACCATTTGAGGCA 60.081 41.667 0.00 0.00 33.28 4.75
3686 6008 7.254852 TGCCTTCAACCAATATTTTCGAATAC 58.745 34.615 0.00 0.00 0.00 1.89
3692 6014 6.149142 TGCATTTGCCTTCAACCAATATTTTC 59.851 34.615 0.00 0.00 41.18 2.29
3894 6217 7.901377 CGGTCTATTTAAGTAATTTTGTGGACG 59.099 37.037 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.