Multiple sequence alignment - TraesCS5D01G030200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G030200 chr5D 100.000 2351 0 0 1 2351 27861334 27858984 0.000000e+00 4342
1 TraesCS5D01G030200 chr5D 94.409 1413 56 7 1 1412 28024497 28025887 0.000000e+00 2150
2 TraesCS5D01G030200 chr5D 89.130 414 33 8 1650 2053 59940304 59940715 2.700000e-139 505
3 TraesCS5D01G030200 chr5D 87.963 432 38 10 1639 2061 541527638 541528064 4.510000e-137 497
4 TraesCS5D01G030200 chr5D 86.861 137 5 4 1468 1604 28025916 28026039 8.760000e-30 141
5 TraesCS5D01G030200 chr5A 93.701 1413 63 7 1 1412 19067613 19069000 0.000000e+00 2093
6 TraesCS5D01G030200 chr4B 92.145 1375 79 10 1 1371 575771236 575772585 0.000000e+00 1914
7 TraesCS5D01G030200 chr4B 82.143 448 69 8 1 443 11433780 11434221 7.930000e-100 374
8 TraesCS5D01G030200 chr4B 86.429 140 13 3 2212 2351 575774590 575774723 5.230000e-32 148
9 TraesCS5D01G030200 chr4B 86.735 98 8 3 1550 1647 575772698 575772790 1.150000e-18 104
10 TraesCS5D01G030200 chr2D 89.346 413 33 10 1650 2055 467889417 467889009 2.080000e-140 508
11 TraesCS5D01G030200 chr2D 88.756 418 34 10 1648 2055 6081037 6081451 1.250000e-137 499
12 TraesCS5D01G030200 chr2D 87.857 420 36 12 1646 2055 434339590 434339176 1.630000e-131 479
13 TraesCS5D01G030200 chr2D 87.681 414 35 11 1650 2052 372514527 372514935 3.540000e-128 468
14 TraesCS5D01G030200 chr6D 88.544 419 32 12 1650 2057 446545133 446544720 5.840000e-136 494
15 TraesCS5D01G030200 chr7D 88.000 425 38 9 1650 2064 11018337 11017916 7.550000e-135 490
16 TraesCS5D01G030200 chr2B 87.681 414 37 9 1650 2052 212179508 212179918 9.840000e-129 470
17 TraesCS5D01G030200 chr4A 82.222 450 68 8 1 443 597052778 597053222 6.130000e-101 377
18 TraesCS5D01G030200 chr4D 82.222 450 65 9 1 443 6283952 6284393 7.930000e-100 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G030200 chr5D 27858984 27861334 2350 True 4342.0 4342 100.000000 1 2351 1 chr5D.!!$R1 2350
1 TraesCS5D01G030200 chr5D 28024497 28026039 1542 False 1145.5 2150 90.635000 1 1604 2 chr5D.!!$F3 1603
2 TraesCS5D01G030200 chr5A 19067613 19069000 1387 False 2093.0 2093 93.701000 1 1412 1 chr5A.!!$F1 1411
3 TraesCS5D01G030200 chr4B 575771236 575774723 3487 False 722.0 1914 88.436333 1 2351 3 chr4B.!!$F2 2350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 923 0.10412 CGTCTCCACCGGCATTATCA 59.896 55.0 0.0 0.0 0.0 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2200 0.037697 TTCCACAGAACATAGCGCGT 60.038 50.0 8.43 0.0 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 341 4.577246 CTGCTACCTCCTCGCCGC 62.577 72.222 0.00 0.00 0.00 6.53
407 408 1.889105 CCTCTACGCCGCCTACGTA 60.889 63.158 0.00 0.00 44.55 3.57
408 409 1.278038 CTCTACGCCGCCTACGTAC 59.722 63.158 0.00 0.00 44.55 3.67
409 410 2.052766 CTACGCCGCCTACGTACG 60.053 66.667 15.01 15.01 44.55 3.67
476 480 1.028905 GGCAGCACCAACACAAGTAA 58.971 50.000 0.00 0.00 38.86 2.24
556 560 1.073199 CCACCAAGAACCTTCGCCT 59.927 57.895 0.00 0.00 0.00 5.52
648 652 4.431131 CGCTGGTCCAGGCCCAAT 62.431 66.667 20.72 0.00 31.21 3.16
649 653 2.757099 GCTGGTCCAGGCCCAATG 60.757 66.667 20.72 0.00 31.21 2.82
650 654 2.757099 CTGGTCCAGGCCCAATGC 60.757 66.667 11.46 0.00 40.16 3.56
859 863 1.008815 TCCTCATGTCCATCCTCTGGT 59.991 52.381 0.00 0.00 46.08 4.00
860 864 1.415659 CCTCATGTCCATCCTCTGGTC 59.584 57.143 0.00 0.00 46.08 4.02
861 865 1.415659 CTCATGTCCATCCTCTGGTCC 59.584 57.143 0.00 0.00 46.08 4.46
862 866 1.008815 TCATGTCCATCCTCTGGTCCT 59.991 52.381 0.00 0.00 46.08 3.85
863 867 2.247372 TCATGTCCATCCTCTGGTCCTA 59.753 50.000 0.00 0.00 46.08 2.94
882 886 3.352748 TCCTACCTCCTGGCCCGA 61.353 66.667 0.00 0.00 36.63 5.14
903 907 3.827898 CTCGTGGCCCTCCTCGTC 61.828 72.222 0.00 0.00 46.27 4.20
915 919 2.579201 CTCGTCTCCACCGGCATT 59.421 61.111 0.00 0.00 0.00 3.56
919 923 0.104120 CGTCTCCACCGGCATTATCA 59.896 55.000 0.00 0.00 0.00 2.15
1177 1181 3.877612 TACGTGACGGTGGCGTTCG 62.878 63.158 10.66 0.00 39.64 3.95
1358 1362 3.692257 ACCAAGACAGTGATTGAGGAG 57.308 47.619 12.47 1.71 0.00 3.69
1412 1417 3.300388 TCGAACAAGATCCTGAGGCTAT 58.700 45.455 0.00 0.00 0.00 2.97
1414 1419 4.520874 TCGAACAAGATCCTGAGGCTATAG 59.479 45.833 0.00 0.00 0.00 1.31
1417 1422 4.156477 ACAAGATCCTGAGGCTATAGGAC 58.844 47.826 19.00 13.69 45.30 3.85
1418 1423 4.155709 CAAGATCCTGAGGCTATAGGACA 58.844 47.826 19.00 2.41 45.30 4.02
1420 1425 4.156477 AGATCCTGAGGCTATAGGACAAC 58.844 47.826 19.00 13.96 45.30 3.32
1421 1426 3.398318 TCCTGAGGCTATAGGACAACA 57.602 47.619 14.21 0.00 38.15 3.33
1423 1428 4.101114 TCCTGAGGCTATAGGACAACAAA 58.899 43.478 14.21 0.00 38.15 2.83
1424 1429 4.081087 TCCTGAGGCTATAGGACAACAAAC 60.081 45.833 14.21 0.00 38.15 2.93
1427 1432 3.596214 AGGCTATAGGACAACAAACACG 58.404 45.455 1.04 0.00 0.00 4.49
1428 1433 3.259876 AGGCTATAGGACAACAAACACGA 59.740 43.478 1.04 0.00 0.00 4.35
1429 1434 3.998341 GGCTATAGGACAACAAACACGAA 59.002 43.478 1.04 0.00 0.00 3.85
1430 1435 4.142966 GGCTATAGGACAACAAACACGAAC 60.143 45.833 1.04 0.00 0.00 3.95
1431 1436 4.449743 GCTATAGGACAACAAACACGAACA 59.550 41.667 1.04 0.00 0.00 3.18
1432 1437 5.049954 GCTATAGGACAACAAACACGAACAA 60.050 40.000 1.04 0.00 0.00 2.83
1433 1438 5.821516 ATAGGACAACAAACACGAACAAA 57.178 34.783 0.00 0.00 0.00 2.83
1434 1439 4.712122 AGGACAACAAACACGAACAAAT 57.288 36.364 0.00 0.00 0.00 2.32
1435 1440 5.066968 AGGACAACAAACACGAACAAATT 57.933 34.783 0.00 0.00 0.00 1.82
1436 1441 4.862018 AGGACAACAAACACGAACAAATTG 59.138 37.500 0.00 0.00 0.00 2.32
1437 1442 4.859798 GGACAACAAACACGAACAAATTGA 59.140 37.500 0.00 0.00 0.00 2.57
1438 1443 5.346281 GGACAACAAACACGAACAAATTGAA 59.654 36.000 0.00 0.00 0.00 2.69
1439 1444 6.128795 GGACAACAAACACGAACAAATTGAAA 60.129 34.615 0.00 0.00 0.00 2.69
1440 1445 6.585852 ACAACAAACACGAACAAATTGAAAC 58.414 32.000 0.00 0.00 0.00 2.78
1441 1446 5.771602 ACAAACACGAACAAATTGAAACC 57.228 34.783 0.00 0.00 0.00 3.27
1442 1447 4.324936 ACAAACACGAACAAATTGAAACCG 59.675 37.500 0.00 0.15 0.00 4.44
1443 1448 3.073144 ACACGAACAAATTGAAACCGG 57.927 42.857 0.00 0.00 0.00 5.28
1444 1449 2.424246 ACACGAACAAATTGAAACCGGT 59.576 40.909 0.00 0.00 0.00 5.28
1445 1450 2.786578 CACGAACAAATTGAAACCGGTG 59.213 45.455 8.52 0.00 0.00 4.94
1456 1461 2.487762 TGAAACCGGTGGTACTACGTAG 59.512 50.000 20.97 20.97 33.12 3.51
1457 1462 1.463674 AACCGGTGGTACTACGTAGG 58.536 55.000 25.63 9.40 33.12 3.18
1458 1463 0.328258 ACCGGTGGTACTACGTAGGT 59.672 55.000 25.63 13.86 32.11 3.08
1459 1464 1.271926 ACCGGTGGTACTACGTAGGTT 60.272 52.381 25.63 9.12 32.11 3.50
1460 1465 1.133025 CCGGTGGTACTACGTAGGTTG 59.867 57.143 25.63 8.50 0.00 3.77
1461 1466 1.133025 CGGTGGTACTACGTAGGTTGG 59.867 57.143 25.63 2.30 0.00 3.77
1462 1467 2.171003 GGTGGTACTACGTAGGTTGGT 58.829 52.381 25.63 8.48 0.00 3.67
1463 1468 2.094545 GGTGGTACTACGTAGGTTGGTG 60.095 54.545 25.63 0.78 0.00 4.17
1464 1469 1.545582 TGGTACTACGTAGGTTGGTGC 59.454 52.381 25.63 9.20 0.00 5.01
1465 1470 1.468054 GGTACTACGTAGGTTGGTGCG 60.468 57.143 25.63 0.00 0.00 5.34
1466 1471 0.810648 TACTACGTAGGTTGGTGCGG 59.189 55.000 25.63 0.00 0.00 5.69
1474 1479 0.110486 AGGTTGGTGCGGAAGTGATT 59.890 50.000 0.00 0.00 0.00 2.57
1484 1489 0.379669 GGAAGTGATTGATGCTGGCG 59.620 55.000 0.00 0.00 0.00 5.69
1485 1490 0.248377 GAAGTGATTGATGCTGGCGC 60.248 55.000 0.00 0.00 0.00 6.53
1498 1503 3.368571 GGCGCTTGGCTGCTTCTT 61.369 61.111 7.64 0.00 42.94 2.52
1505 1514 2.221169 CTTGGCTGCTTCTTACACACA 58.779 47.619 0.00 0.00 0.00 3.72
1512 1521 2.100087 TGCTTCTTACACACACTCGTGA 59.900 45.455 3.74 0.00 46.80 4.35
1534 1543 2.677914 TCACTTCAGTTGTGAGAGGGA 58.322 47.619 0.00 0.00 39.23 4.20
1539 1548 2.783135 TCAGTTGTGAGAGGGAAATGC 58.217 47.619 0.00 0.00 0.00 3.56
1540 1549 2.106338 TCAGTTGTGAGAGGGAAATGCA 59.894 45.455 0.00 0.00 0.00 3.96
1541 1550 3.087031 CAGTTGTGAGAGGGAAATGCAT 58.913 45.455 0.00 0.00 0.00 3.96
1542 1551 3.087031 AGTTGTGAGAGGGAAATGCATG 58.913 45.455 0.00 0.00 0.00 4.06
1543 1552 2.821969 GTTGTGAGAGGGAAATGCATGT 59.178 45.455 0.00 0.00 0.00 3.21
1544 1553 2.439409 TGTGAGAGGGAAATGCATGTG 58.561 47.619 0.00 0.00 0.00 3.21
1545 1554 1.133790 GTGAGAGGGAAATGCATGTGC 59.866 52.381 0.00 0.00 42.50 4.57
1590 1599 5.192327 AGCCAGAAAACAAAGTCATTCTG 57.808 39.130 14.01 14.01 45.22 3.02
1620 1629 7.900782 TCTGTTGTAAATTAAGTAGGAGCAC 57.099 36.000 0.00 0.00 0.00 4.40
1622 1631 6.457355 TGTTGTAAATTAAGTAGGAGCACGA 58.543 36.000 0.00 0.00 0.00 4.35
1623 1632 7.101054 TGTTGTAAATTAAGTAGGAGCACGAT 58.899 34.615 0.00 0.00 0.00 3.73
1624 1633 8.252417 TGTTGTAAATTAAGTAGGAGCACGATA 58.748 33.333 0.00 0.00 0.00 2.92
1625 1634 9.257651 GTTGTAAATTAAGTAGGAGCACGATAT 57.742 33.333 0.00 0.00 0.00 1.63
1653 1662 4.388378 AAGGGATGAAGTACTTAGACGC 57.612 45.455 8.42 10.49 0.00 5.19
1656 1665 3.313526 GGGATGAAGTACTTAGACGCGTA 59.686 47.826 13.97 0.00 0.00 4.42
1657 1666 4.023365 GGGATGAAGTACTTAGACGCGTAT 60.023 45.833 13.97 13.18 0.00 3.06
1658 1667 5.506982 GGGATGAAGTACTTAGACGCGTATT 60.507 44.000 13.97 6.32 0.00 1.89
1659 1668 5.975939 GGATGAAGTACTTAGACGCGTATTT 59.024 40.000 13.97 3.27 0.00 1.40
1661 1670 5.097529 TGAAGTACTTAGACGCGTATTTGG 58.902 41.667 13.97 5.26 0.00 3.28
1663 1672 4.418392 AGTACTTAGACGCGTATTTGGTG 58.582 43.478 13.97 1.37 0.00 4.17
1664 1673 3.581024 ACTTAGACGCGTATTTGGTGA 57.419 42.857 13.97 0.00 0.00 4.02
1665 1674 3.916761 ACTTAGACGCGTATTTGGTGAA 58.083 40.909 13.97 0.00 0.00 3.18
1666 1675 3.676646 ACTTAGACGCGTATTTGGTGAAC 59.323 43.478 13.97 0.00 0.00 3.18
1667 1676 2.157834 AGACGCGTATTTGGTGAACA 57.842 45.000 13.97 0.00 0.00 3.18
1668 1677 2.695359 AGACGCGTATTTGGTGAACAT 58.305 42.857 13.97 0.00 0.00 2.71
1669 1678 2.415168 AGACGCGTATTTGGTGAACATG 59.585 45.455 13.97 0.00 0.00 3.21
1670 1679 1.466950 ACGCGTATTTGGTGAACATGG 59.533 47.619 11.67 0.00 0.00 3.66
1671 1680 1.202132 CGCGTATTTGGTGAACATGGG 60.202 52.381 0.00 0.00 0.00 4.00
1672 1681 1.816224 GCGTATTTGGTGAACATGGGT 59.184 47.619 0.00 0.00 0.00 4.51
1673 1682 2.415357 GCGTATTTGGTGAACATGGGTG 60.415 50.000 0.00 0.00 0.00 4.61
1674 1683 2.415357 CGTATTTGGTGAACATGGGTGC 60.415 50.000 0.00 0.00 0.00 5.01
1675 1684 0.602562 ATTTGGTGAACATGGGTGCG 59.397 50.000 0.00 0.00 0.00 5.34
1676 1685 2.081425 TTTGGTGAACATGGGTGCGC 62.081 55.000 0.00 0.00 31.86 6.09
1677 1686 4.101790 GGTGAACATGGGTGCGCG 62.102 66.667 0.00 0.00 33.58 6.86
1678 1687 3.353836 GTGAACATGGGTGCGCGT 61.354 61.111 8.43 0.00 0.00 6.01
1679 1688 3.353029 TGAACATGGGTGCGCGTG 61.353 61.111 8.43 0.00 0.00 5.34
1680 1689 4.759096 GAACATGGGTGCGCGTGC 62.759 66.667 15.48 15.48 43.20 5.34
1690 1699 2.100216 GCGCGTGCACCCTTTATG 59.900 61.111 17.66 0.00 42.15 1.90
1691 1700 2.395360 GCGCGTGCACCCTTTATGA 61.395 57.895 17.66 0.00 42.15 2.15
1692 1701 1.917782 GCGCGTGCACCCTTTATGAA 61.918 55.000 17.66 0.00 42.15 2.57
1693 1702 0.732571 CGCGTGCACCCTTTATGAAT 59.267 50.000 12.15 0.00 0.00 2.57
1694 1703 1.937223 CGCGTGCACCCTTTATGAATA 59.063 47.619 12.15 0.00 0.00 1.75
1695 1704 2.548057 CGCGTGCACCCTTTATGAATAT 59.452 45.455 12.15 0.00 0.00 1.28
1696 1705 3.003275 CGCGTGCACCCTTTATGAATATT 59.997 43.478 12.15 0.00 0.00 1.28
1697 1706 4.212425 CGCGTGCACCCTTTATGAATATTA 59.788 41.667 12.15 0.00 0.00 0.98
1698 1707 5.277586 CGCGTGCACCCTTTATGAATATTAA 60.278 40.000 12.15 0.00 0.00 1.40
1699 1708 6.500041 GCGTGCACCCTTTATGAATATTAAA 58.500 36.000 12.15 0.00 0.00 1.52
1700 1709 7.145323 GCGTGCACCCTTTATGAATATTAAAT 58.855 34.615 12.15 0.00 0.00 1.40
1701 1710 8.293867 GCGTGCACCCTTTATGAATATTAAATA 58.706 33.333 12.15 0.00 0.00 1.40
1773 1782 7.066307 AGTCAACATGTATACTGGCATATGA 57.934 36.000 6.97 0.00 0.00 2.15
1774 1783 7.508687 AGTCAACATGTATACTGGCATATGAA 58.491 34.615 6.97 0.00 0.00 2.57
1775 1784 7.658982 AGTCAACATGTATACTGGCATATGAAG 59.341 37.037 6.97 5.61 0.00 3.02
1776 1785 7.442364 GTCAACATGTATACTGGCATATGAAGT 59.558 37.037 6.97 11.38 0.00 3.01
1777 1786 7.992608 TCAACATGTATACTGGCATATGAAGTT 59.007 33.333 14.49 7.45 0.00 2.66
1778 1787 8.623903 CAACATGTATACTGGCATATGAAGTTT 58.376 33.333 14.49 10.47 0.00 2.66
1779 1788 8.383318 ACATGTATACTGGCATATGAAGTTTC 57.617 34.615 14.49 8.04 0.00 2.78
1780 1789 7.992608 ACATGTATACTGGCATATGAAGTTTCA 59.007 33.333 14.49 11.85 42.14 2.69
1782 1791 8.382030 TGTATACTGGCATATGAAGTTTCATG 57.618 34.615 15.72 4.72 46.68 3.07
1783 1792 8.210265 TGTATACTGGCATATGAAGTTTCATGA 58.790 33.333 15.72 0.00 46.68 3.07
1784 1793 9.056005 GTATACTGGCATATGAAGTTTCATGAA 57.944 33.333 15.72 3.38 46.68 2.57
1785 1794 6.446781 ACTGGCATATGAAGTTTCATGAAG 57.553 37.500 15.72 7.74 46.68 3.02
1786 1795 5.948162 ACTGGCATATGAAGTTTCATGAAGT 59.052 36.000 15.72 9.48 46.68 3.01
1787 1796 7.112122 ACTGGCATATGAAGTTTCATGAAGTA 58.888 34.615 15.72 0.00 46.68 2.24
1788 1797 7.611467 ACTGGCATATGAAGTTTCATGAAGTAA 59.389 33.333 15.72 0.00 46.68 2.24
1789 1798 8.523915 TGGCATATGAAGTTTCATGAAGTAAT 57.476 30.769 15.72 2.93 46.68 1.89
1790 1799 8.623903 TGGCATATGAAGTTTCATGAAGTAATC 58.376 33.333 15.72 6.90 46.68 1.75
1791 1800 8.623903 GGCATATGAAGTTTCATGAAGTAATCA 58.376 33.333 15.72 11.85 46.68 2.57
1792 1801 9.443283 GCATATGAAGTTTCATGAAGTAATCAC 57.557 33.333 15.72 2.96 46.68 3.06
1796 1805 8.044060 TGAAGTTTCATGAAGTAATCACATCC 57.956 34.615 8.41 0.00 41.93 3.51
1797 1806 6.668541 AGTTTCATGAAGTAATCACATCCG 57.331 37.500 8.41 0.00 41.93 4.18
1798 1807 6.173339 AGTTTCATGAAGTAATCACATCCGT 58.827 36.000 8.41 0.00 41.93 4.69
1799 1808 6.092670 AGTTTCATGAAGTAATCACATCCGTG 59.907 38.462 8.41 0.00 41.93 4.94
1810 1819 3.354089 CACATCCGTGATAATTTGGGC 57.646 47.619 0.00 0.00 46.80 5.36
1811 1820 2.687425 CACATCCGTGATAATTTGGGCA 59.313 45.455 0.00 0.00 46.80 5.36
1812 1821 3.130164 CACATCCGTGATAATTTGGGCAA 59.870 43.478 0.00 0.00 46.80 4.52
1813 1822 3.766591 ACATCCGTGATAATTTGGGCAAA 59.233 39.130 0.00 0.00 34.46 3.68
1814 1823 4.221703 ACATCCGTGATAATTTGGGCAAAA 59.778 37.500 0.00 0.00 33.56 2.44
1815 1824 4.873746 TCCGTGATAATTTGGGCAAAAA 57.126 36.364 0.00 0.00 33.56 1.94
1816 1825 5.413309 TCCGTGATAATTTGGGCAAAAAT 57.587 34.783 0.00 0.00 33.56 1.82
1817 1826 5.174395 TCCGTGATAATTTGGGCAAAAATG 58.826 37.500 0.00 0.00 33.56 2.32
1818 1827 5.047021 TCCGTGATAATTTGGGCAAAAATGA 60.047 36.000 0.00 0.00 33.56 2.57
1819 1828 5.063312 CCGTGATAATTTGGGCAAAAATGAC 59.937 40.000 0.00 0.00 33.56 3.06
1820 1829 5.636965 CGTGATAATTTGGGCAAAAATGACA 59.363 36.000 0.00 0.00 33.56 3.58
1821 1830 6.146837 CGTGATAATTTGGGCAAAAATGACAA 59.853 34.615 0.00 0.00 33.56 3.18
1822 1831 7.307632 CGTGATAATTTGGGCAAAAATGACAAA 60.308 33.333 0.00 0.00 35.76 2.83
1823 1832 8.348507 GTGATAATTTGGGCAAAAATGACAAAA 58.651 29.630 0.00 0.00 35.06 2.44
1824 1833 9.075678 TGATAATTTGGGCAAAAATGACAAAAT 57.924 25.926 0.00 0.00 35.06 1.82
1825 1834 9.558648 GATAATTTGGGCAAAAATGACAAAATC 57.441 29.630 0.00 0.00 35.06 2.17
1826 1835 5.415415 TTTGGGCAAAAATGACAAAATCG 57.585 34.783 0.00 0.00 0.00 3.34
1827 1836 4.327982 TGGGCAAAAATGACAAAATCGA 57.672 36.364 0.00 0.00 0.00 3.59
1828 1837 4.697514 TGGGCAAAAATGACAAAATCGAA 58.302 34.783 0.00 0.00 0.00 3.71
1829 1838 5.118990 TGGGCAAAAATGACAAAATCGAAA 58.881 33.333 0.00 0.00 0.00 3.46
1830 1839 5.007136 TGGGCAAAAATGACAAAATCGAAAC 59.993 36.000 0.00 0.00 0.00 2.78
1831 1840 5.236263 GGGCAAAAATGACAAAATCGAAACT 59.764 36.000 0.00 0.00 0.00 2.66
1832 1841 6.128729 GGCAAAAATGACAAAATCGAAACTG 58.871 36.000 0.00 0.00 0.00 3.16
1833 1842 6.238076 GGCAAAAATGACAAAATCGAAACTGT 60.238 34.615 0.00 0.00 0.00 3.55
1834 1843 7.043059 GGCAAAAATGACAAAATCGAAACTGTA 60.043 33.333 0.00 0.00 0.00 2.74
1835 1844 8.487176 GCAAAAATGACAAAATCGAAACTGTAT 58.513 29.630 0.00 0.00 0.00 2.29
1864 1873 9.912634 AAAAACACTGTTGAATGAATAGTATGG 57.087 29.630 0.00 0.00 33.97 2.74
1865 1874 8.635765 AAACACTGTTGAATGAATAGTATGGT 57.364 30.769 0.00 0.00 33.97 3.55
1866 1875 7.849804 ACACTGTTGAATGAATAGTATGGTC 57.150 36.000 0.00 0.00 33.97 4.02
1867 1876 6.535150 ACACTGTTGAATGAATAGTATGGTCG 59.465 38.462 0.00 0.00 33.97 4.79
1868 1877 5.523916 ACTGTTGAATGAATAGTATGGTCGC 59.476 40.000 0.00 0.00 34.44 5.19
1869 1878 5.423886 TGTTGAATGAATAGTATGGTCGCA 58.576 37.500 0.00 0.00 0.00 5.10
1870 1879 6.054941 TGTTGAATGAATAGTATGGTCGCAT 58.945 36.000 0.00 0.00 0.00 4.73
1871 1880 6.542005 TGTTGAATGAATAGTATGGTCGCATT 59.458 34.615 0.00 0.00 0.00 3.56
1872 1881 7.066887 TGTTGAATGAATAGTATGGTCGCATTT 59.933 33.333 0.00 0.00 0.00 2.32
1873 1882 6.958255 TGAATGAATAGTATGGTCGCATTTG 58.042 36.000 0.00 0.00 0.00 2.32
1874 1883 6.542005 TGAATGAATAGTATGGTCGCATTTGT 59.458 34.615 0.00 0.00 0.00 2.83
1875 1884 7.713073 TGAATGAATAGTATGGTCGCATTTGTA 59.287 33.333 0.00 0.00 0.00 2.41
1876 1885 8.621532 AATGAATAGTATGGTCGCATTTGTAT 57.378 30.769 0.00 0.00 0.00 2.29
1877 1886 8.621532 ATGAATAGTATGGTCGCATTTGTATT 57.378 30.769 0.00 0.00 0.00 1.89
1878 1887 8.445275 TGAATAGTATGGTCGCATTTGTATTT 57.555 30.769 0.00 0.00 0.00 1.40
1879 1888 8.898761 TGAATAGTATGGTCGCATTTGTATTTT 58.101 29.630 0.00 0.00 0.00 1.82
1880 1889 9.382244 GAATAGTATGGTCGCATTTGTATTTTC 57.618 33.333 0.00 0.00 0.00 2.29
1881 1890 8.677148 ATAGTATGGTCGCATTTGTATTTTCT 57.323 30.769 0.00 0.00 0.00 2.52
1882 1891 7.391148 AGTATGGTCGCATTTGTATTTTCTT 57.609 32.000 0.00 0.00 0.00 2.52
1883 1892 7.472543 AGTATGGTCGCATTTGTATTTTCTTC 58.527 34.615 0.00 0.00 0.00 2.87
1884 1893 5.697473 TGGTCGCATTTGTATTTTCTTCA 57.303 34.783 0.00 0.00 0.00 3.02
1885 1894 5.457140 TGGTCGCATTTGTATTTTCTTCAC 58.543 37.500 0.00 0.00 0.00 3.18
1886 1895 5.240623 TGGTCGCATTTGTATTTTCTTCACT 59.759 36.000 0.00 0.00 0.00 3.41
1887 1896 6.428465 TGGTCGCATTTGTATTTTCTTCACTA 59.572 34.615 0.00 0.00 0.00 2.74
1888 1897 7.041030 TGGTCGCATTTGTATTTTCTTCACTAA 60.041 33.333 0.00 0.00 0.00 2.24
1889 1898 7.481798 GGTCGCATTTGTATTTTCTTCACTAAG 59.518 37.037 0.00 0.00 0.00 2.18
1890 1899 8.227791 GTCGCATTTGTATTTTCTTCACTAAGA 58.772 33.333 0.00 0.00 40.03 2.10
1901 1910 6.636454 TTCTTCACTAAGAATACCATGGGT 57.364 37.500 18.09 4.30 44.85 4.51
1902 1911 5.989477 TCTTCACTAAGAATACCATGGGTG 58.011 41.667 18.09 11.64 38.81 4.61
1903 1912 5.487488 TCTTCACTAAGAATACCATGGGTGT 59.513 40.000 18.09 0.00 38.81 4.16
1904 1913 5.353394 TCACTAAGAATACCATGGGTGTC 57.647 43.478 18.09 9.62 36.19 3.67
1905 1914 4.780554 TCACTAAGAATACCATGGGTGTCA 59.219 41.667 18.09 0.00 36.19 3.58
1906 1915 5.249622 TCACTAAGAATACCATGGGTGTCAA 59.750 40.000 18.09 1.84 36.19 3.18
1907 1916 6.069673 TCACTAAGAATACCATGGGTGTCAAT 60.070 38.462 18.09 5.69 36.19 2.57
1908 1917 6.038603 CACTAAGAATACCATGGGTGTCAATG 59.961 42.308 18.09 3.16 36.19 2.82
1909 1918 4.591321 AGAATACCATGGGTGTCAATGT 57.409 40.909 18.09 0.00 36.19 2.71
1910 1919 5.708736 AGAATACCATGGGTGTCAATGTA 57.291 39.130 18.09 0.00 36.19 2.29
1911 1920 6.266131 AGAATACCATGGGTGTCAATGTAT 57.734 37.500 18.09 0.00 36.19 2.29
1912 1921 6.299141 AGAATACCATGGGTGTCAATGTATC 58.701 40.000 18.09 0.00 36.19 2.24
1913 1922 5.645056 ATACCATGGGTGTCAATGTATCA 57.355 39.130 18.09 0.00 36.19 2.15
1914 1923 4.524802 ACCATGGGTGTCAATGTATCAT 57.475 40.909 18.09 0.00 32.98 2.45
1915 1924 4.209538 ACCATGGGTGTCAATGTATCATG 58.790 43.478 18.09 0.00 32.98 3.07
1916 1925 4.079844 ACCATGGGTGTCAATGTATCATGA 60.080 41.667 18.09 0.00 32.98 3.07
1917 1926 4.888823 CCATGGGTGTCAATGTATCATGAA 59.111 41.667 2.85 0.00 34.26 2.57
1918 1927 5.360429 CCATGGGTGTCAATGTATCATGAAA 59.640 40.000 2.85 0.00 34.26 2.69
1919 1928 5.895636 TGGGTGTCAATGTATCATGAAAC 57.104 39.130 0.00 0.00 33.80 2.78
1920 1929 5.569355 TGGGTGTCAATGTATCATGAAACT 58.431 37.500 0.00 0.00 34.77 2.66
1921 1930 6.009589 TGGGTGTCAATGTATCATGAAACTT 58.990 36.000 0.00 0.00 34.77 2.66
1922 1931 6.150976 TGGGTGTCAATGTATCATGAAACTTC 59.849 38.462 0.00 0.00 34.77 3.01
1923 1932 6.150976 GGGTGTCAATGTATCATGAAACTTCA 59.849 38.462 0.00 0.00 42.14 3.02
1924 1933 7.023575 GGTGTCAATGTATCATGAAACTTCAC 58.976 38.462 0.00 2.74 40.49 3.18
1925 1934 7.308529 GGTGTCAATGTATCATGAAACTTCACA 60.309 37.037 0.00 0.00 40.49 3.58
1926 1935 7.535258 GTGTCAATGTATCATGAAACTTCACAC 59.465 37.037 0.00 4.57 40.49 3.82
1927 1936 6.738200 GTCAATGTATCATGAAACTTCACACG 59.262 38.462 0.00 0.00 40.49 4.49
1928 1937 6.426633 TCAATGTATCATGAAACTTCACACGT 59.573 34.615 0.00 0.00 40.49 4.49
1929 1938 5.590104 TGTATCATGAAACTTCACACGTG 57.410 39.130 15.48 15.48 40.49 4.49
1930 1939 5.293560 TGTATCATGAAACTTCACACGTGA 58.706 37.500 25.01 0.00 40.49 4.35
1931 1940 4.997905 ATCATGAAACTTCACACGTGAG 57.002 40.909 25.01 15.63 41.13 3.51
1932 1941 3.792401 TCATGAAACTTCACACGTGAGT 58.208 40.909 25.01 12.85 42.05 3.41
1933 1942 4.939271 TCATGAAACTTCACACGTGAGTA 58.061 39.130 25.01 7.42 41.12 2.59
1934 1943 4.982295 TCATGAAACTTCACACGTGAGTAG 59.018 41.667 25.01 19.68 41.12 2.57
1935 1944 4.642445 TGAAACTTCACACGTGAGTAGA 57.358 40.909 25.01 11.34 41.13 2.59
1936 1945 5.001237 TGAAACTTCACACGTGAGTAGAA 57.999 39.130 25.01 17.65 41.13 2.10
1937 1946 5.597806 TGAAACTTCACACGTGAGTAGAAT 58.402 37.500 25.01 11.44 41.13 2.40
1938 1947 5.462068 TGAAACTTCACACGTGAGTAGAATG 59.538 40.000 25.01 8.23 41.13 2.67
1939 1948 6.681865 TGAAACTTCACACGTGAGTAGAATGA 60.682 38.462 25.01 10.74 41.13 2.57
1940 1949 8.108837 TGAAACTTCACACGTGAGTAGAATGAA 61.109 37.037 25.01 17.62 41.13 2.57
1949 1958 6.746120 ACGTGAGTAGAATGAACAACTAAGT 58.254 36.000 0.00 0.00 46.88 2.24
1950 1959 7.208080 ACGTGAGTAGAATGAACAACTAAGTT 58.792 34.615 0.00 0.00 46.88 2.66
1951 1960 7.381678 ACGTGAGTAGAATGAACAACTAAGTTC 59.618 37.037 0.00 0.00 46.88 3.01
1952 1961 7.595502 CGTGAGTAGAATGAACAACTAAGTTCT 59.404 37.037 8.13 0.00 46.19 3.01
1953 1962 9.262358 GTGAGTAGAATGAACAACTAAGTTCTT 57.738 33.333 8.13 0.00 46.19 2.52
1956 1965 9.708092 AGTAGAATGAACAACTAAGTTCTTACC 57.292 33.333 8.13 0.00 46.19 2.85
1957 1966 7.653767 AGAATGAACAACTAAGTTCTTACCG 57.346 36.000 8.13 0.00 46.19 4.02
1958 1967 5.857822 ATGAACAACTAAGTTCTTACCGC 57.142 39.130 8.13 0.00 46.19 5.68
1959 1968 3.737266 TGAACAACTAAGTTCTTACCGCG 59.263 43.478 0.00 0.00 46.19 6.46
1960 1969 3.648339 ACAACTAAGTTCTTACCGCGA 57.352 42.857 8.23 0.00 0.00 5.87
1961 1970 3.981211 ACAACTAAGTTCTTACCGCGAA 58.019 40.909 8.23 0.00 0.00 4.70
1962 1971 4.370917 ACAACTAAGTTCTTACCGCGAAA 58.629 39.130 8.23 0.00 0.00 3.46
1963 1972 4.992951 ACAACTAAGTTCTTACCGCGAAAT 59.007 37.500 8.23 0.00 0.00 2.17
1964 1973 5.467735 ACAACTAAGTTCTTACCGCGAAATT 59.532 36.000 8.23 0.85 33.81 1.82
1965 1974 6.017687 ACAACTAAGTTCTTACCGCGAAATTT 60.018 34.615 8.23 0.00 31.97 1.82
1966 1975 6.161911 ACTAAGTTCTTACCGCGAAATTTC 57.838 37.500 8.23 8.20 31.97 2.17
1967 1976 5.697633 ACTAAGTTCTTACCGCGAAATTTCA 59.302 36.000 17.99 0.00 31.97 2.69
1968 1977 4.663636 AGTTCTTACCGCGAAATTTCAG 57.336 40.909 17.99 10.68 0.00 3.02
1969 1978 4.312443 AGTTCTTACCGCGAAATTTCAGA 58.688 39.130 17.99 8.93 0.00 3.27
1970 1979 4.753107 AGTTCTTACCGCGAAATTTCAGAA 59.247 37.500 17.99 13.86 0.00 3.02
1971 1980 5.411669 AGTTCTTACCGCGAAATTTCAGAAT 59.588 36.000 17.99 3.53 0.00 2.40
1972 1981 5.873179 TCTTACCGCGAAATTTCAGAATT 57.127 34.783 17.99 1.00 37.06 2.17
1973 1982 6.249035 TCTTACCGCGAAATTTCAGAATTT 57.751 33.333 17.99 0.00 45.62 1.82
1974 1983 6.674066 TCTTACCGCGAAATTTCAGAATTTT 58.326 32.000 17.99 3.19 43.61 1.82
1975 1984 7.142680 TCTTACCGCGAAATTTCAGAATTTTT 58.857 30.769 17.99 0.00 43.61 1.94
1976 1985 5.822584 ACCGCGAAATTTCAGAATTTTTC 57.177 34.783 17.99 6.71 43.61 2.29
1977 1986 5.528870 ACCGCGAAATTTCAGAATTTTTCT 58.471 33.333 17.99 0.00 43.61 2.52
1978 1987 5.983118 ACCGCGAAATTTCAGAATTTTTCTT 59.017 32.000 17.99 0.00 43.61 2.52
1979 1988 7.142680 ACCGCGAAATTTCAGAATTTTTCTTA 58.857 30.769 17.99 0.00 43.61 2.10
1980 1989 7.812669 ACCGCGAAATTTCAGAATTTTTCTTAT 59.187 29.630 17.99 0.00 43.61 1.73
1981 1990 8.647226 CCGCGAAATTTCAGAATTTTTCTTATT 58.353 29.630 17.99 0.00 43.61 1.40
2022 2031 9.669887 TTTTATGTATTTACTATTCACGTGGGT 57.330 29.630 17.00 11.87 0.00 4.51
2023 2032 8.651391 TTATGTATTTACTATTCACGTGGGTG 57.349 34.615 17.00 6.47 45.78 4.61
2024 2033 4.871557 TGTATTTACTATTCACGTGGGTGC 59.128 41.667 17.00 0.00 44.03 5.01
2025 2034 1.999048 TTACTATTCACGTGGGTGCG 58.001 50.000 17.00 3.60 44.03 5.34
2026 2035 0.458889 TACTATTCACGTGGGTGCGC 60.459 55.000 17.00 0.00 44.03 6.09
2027 2036 2.798501 CTATTCACGTGGGTGCGCG 61.799 63.158 17.00 0.00 44.03 6.86
2040 2049 4.519274 GCGCGCGCATCATGTTCA 62.519 61.111 46.11 0.00 41.49 3.18
2041 2050 2.645628 CGCGCGCATCATGTTCAC 60.646 61.111 32.61 0.00 0.00 3.18
2042 2051 2.277501 GCGCGCATCATGTTCACC 60.278 61.111 29.10 0.00 0.00 4.02
2043 2052 2.753966 GCGCGCATCATGTTCACCT 61.754 57.895 29.10 0.00 0.00 4.00
2044 2053 1.796151 CGCGCATCATGTTCACCTT 59.204 52.632 8.75 0.00 0.00 3.50
2045 2054 0.168788 CGCGCATCATGTTCACCTTT 59.831 50.000 8.75 0.00 0.00 3.11
2046 2055 1.621107 GCGCATCATGTTCACCTTTG 58.379 50.000 0.30 0.00 0.00 2.77
2047 2056 1.068333 GCGCATCATGTTCACCTTTGT 60.068 47.619 0.30 0.00 0.00 2.83
2048 2057 2.161410 GCGCATCATGTTCACCTTTGTA 59.839 45.455 0.30 0.00 0.00 2.41
2049 2058 3.181497 GCGCATCATGTTCACCTTTGTAT 60.181 43.478 0.30 0.00 0.00 2.29
2050 2059 4.675146 GCGCATCATGTTCACCTTTGTATT 60.675 41.667 0.30 0.00 0.00 1.89
2051 2060 5.401550 CGCATCATGTTCACCTTTGTATTT 58.598 37.500 0.00 0.00 0.00 1.40
2052 2061 5.863397 CGCATCATGTTCACCTTTGTATTTT 59.137 36.000 0.00 0.00 0.00 1.82
2053 2062 6.033831 CGCATCATGTTCACCTTTGTATTTTC 59.966 38.462 0.00 0.00 0.00 2.29
2054 2063 6.033831 GCATCATGTTCACCTTTGTATTTTCG 59.966 38.462 0.00 0.00 0.00 3.46
2055 2064 6.869315 TCATGTTCACCTTTGTATTTTCGA 57.131 33.333 0.00 0.00 0.00 3.71
2056 2065 7.447374 TCATGTTCACCTTTGTATTTTCGAT 57.553 32.000 0.00 0.00 0.00 3.59
2057 2066 7.304735 TCATGTTCACCTTTGTATTTTCGATG 58.695 34.615 0.00 0.00 0.00 3.84
2058 2067 6.869315 TGTTCACCTTTGTATTTTCGATGA 57.131 33.333 0.00 0.00 0.00 2.92
2059 2068 7.265647 TGTTCACCTTTGTATTTTCGATGAA 57.734 32.000 0.00 0.00 0.00 2.57
2060 2069 7.359595 TGTTCACCTTTGTATTTTCGATGAAG 58.640 34.615 0.00 0.00 0.00 3.02
2061 2070 7.012894 TGTTCACCTTTGTATTTTCGATGAAGT 59.987 33.333 0.00 0.00 0.00 3.01
2062 2071 8.500773 GTTCACCTTTGTATTTTCGATGAAGTA 58.499 33.333 0.00 0.00 0.00 2.24
2063 2072 8.025243 TCACCTTTGTATTTTCGATGAAGTAC 57.975 34.615 0.00 0.00 0.00 2.73
2064 2073 7.876068 TCACCTTTGTATTTTCGATGAAGTACT 59.124 33.333 0.00 0.00 0.00 2.73
2065 2074 8.504005 CACCTTTGTATTTTCGATGAAGTACTT 58.496 33.333 8.13 8.13 0.00 2.24
2066 2075 8.718734 ACCTTTGTATTTTCGATGAAGTACTTC 58.281 33.333 25.73 25.73 39.91 3.01
2067 2076 8.936864 CCTTTGTATTTTCGATGAAGTACTTCT 58.063 33.333 30.47 18.78 40.14 2.85
2068 2077 9.959775 CTTTGTATTTTCGATGAAGTACTTCTC 57.040 33.333 30.47 23.46 40.14 2.87
2069 2078 9.706691 TTTGTATTTTCGATGAAGTACTTCTCT 57.293 29.630 30.47 20.20 40.14 3.10
2118 2127 9.884636 TGTACAAGTACATATGAGTAAATGCTT 57.115 29.630 10.38 0.00 40.77 3.91
2127 2136 9.935682 ACATATGAGTAAATGCTTTAATTCACG 57.064 29.630 10.38 0.00 0.00 4.35
2128 2137 9.385902 CATATGAGTAAATGCTTTAATTCACGG 57.614 33.333 0.00 0.00 0.00 4.94
2129 2138 7.624360 ATGAGTAAATGCTTTAATTCACGGA 57.376 32.000 0.00 0.00 0.00 4.69
2130 2139 7.441890 TGAGTAAATGCTTTAATTCACGGAA 57.558 32.000 0.00 0.00 0.00 4.30
2131 2140 7.877003 TGAGTAAATGCTTTAATTCACGGAAA 58.123 30.769 0.00 0.00 0.00 3.13
2132 2141 7.806014 TGAGTAAATGCTTTAATTCACGGAAAC 59.194 33.333 0.00 0.00 0.00 2.78
2133 2142 7.882179 AGTAAATGCTTTAATTCACGGAAACT 58.118 30.769 0.00 0.00 0.00 2.66
2134 2143 8.021396 AGTAAATGCTTTAATTCACGGAAACTC 58.979 33.333 0.00 0.00 0.00 3.01
2135 2144 6.575162 AATGCTTTAATTCACGGAAACTCT 57.425 33.333 0.00 0.00 0.00 3.24
2136 2145 5.607119 TGCTTTAATTCACGGAAACTCTC 57.393 39.130 0.00 0.00 0.00 3.20
2137 2146 5.305585 TGCTTTAATTCACGGAAACTCTCT 58.694 37.500 0.00 0.00 0.00 3.10
2138 2147 5.408604 TGCTTTAATTCACGGAAACTCTCTC 59.591 40.000 0.00 0.00 0.00 3.20
2139 2148 5.408604 GCTTTAATTCACGGAAACTCTCTCA 59.591 40.000 0.00 0.00 0.00 3.27
2140 2149 6.073222 GCTTTAATTCACGGAAACTCTCTCAA 60.073 38.462 0.00 0.00 0.00 3.02
2169 2178 6.419484 TGAGGTCACTAATTTGAGACTTGA 57.581 37.500 14.65 2.01 0.00 3.02
2174 2183 6.825721 GGTCACTAATTTGAGACTTGATCCAT 59.174 38.462 14.65 0.00 0.00 3.41
2191 2200 7.706100 TGATCCATGATTTTGACTTGATCAA 57.294 32.000 8.12 8.12 45.92 2.57
2198 2207 2.073117 TTGACTTGATCAACGCGCTA 57.927 45.000 5.73 0.00 42.62 4.26
2203 2212 2.348666 ACTTGATCAACGCGCTATGTTC 59.651 45.455 5.73 8.54 0.00 3.18
2210 2219 0.037697 ACGCGCTATGTTCTGTGGAA 60.038 50.000 5.73 0.00 0.00 3.53
2219 3938 5.762218 GCTATGTTCTGTGGAATTATCTGCT 59.238 40.000 0.00 0.00 33.71 4.24
2222 3941 4.937620 TGTTCTGTGGAATTATCTGCTGAC 59.062 41.667 0.00 0.00 33.71 3.51
2225 3944 2.213499 GTGGAATTATCTGCTGACGGG 58.787 52.381 0.00 0.00 0.00 5.28
2237 3956 2.983592 GACGGGTGGGCTTGTTGG 60.984 66.667 0.00 0.00 0.00 3.77
2242 3961 1.458927 GGTGGGCTTGTTGGTAGGT 59.541 57.895 0.00 0.00 0.00 3.08
2243 3962 0.893727 GGTGGGCTTGTTGGTAGGTG 60.894 60.000 0.00 0.00 0.00 4.00
2244 3963 0.893727 GTGGGCTTGTTGGTAGGTGG 60.894 60.000 0.00 0.00 0.00 4.61
2245 3964 1.357272 TGGGCTTGTTGGTAGGTGGT 61.357 55.000 0.00 0.00 0.00 4.16
2246 3965 0.178973 GGGCTTGTTGGTAGGTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
2247 3966 0.958822 GGCTTGTTGGTAGGTGGTTG 59.041 55.000 0.00 0.00 0.00 3.77
2255 3974 2.622210 TGGTAGGTGGTTGTATGGTGA 58.378 47.619 0.00 0.00 0.00 4.02
2258 3977 2.879103 AGGTGGTTGTATGGTGAAGG 57.121 50.000 0.00 0.00 0.00 3.46
2265 3984 4.724293 TGGTTGTATGGTGAAGGGATATGA 59.276 41.667 0.00 0.00 0.00 2.15
2268 3987 6.357367 GTTGTATGGTGAAGGGATATGAGTT 58.643 40.000 0.00 0.00 0.00 3.01
2273 3992 5.684704 TGGTGAAGGGATATGAGTTGATTC 58.315 41.667 0.00 0.00 0.00 2.52
2294 4013 1.270550 AGGGCAACAATTTCAAGAGCG 59.729 47.619 0.00 0.00 39.74 5.03
2299 4018 4.107622 GCAACAATTTCAAGAGCGCATAT 58.892 39.130 11.47 0.00 0.00 1.78
2335 4054 3.297134 TTTGCTTCTTTCTCCACTGGT 57.703 42.857 0.00 0.00 0.00 4.00
2341 4060 1.971357 TCTTTCTCCACTGGTCAGTCC 59.029 52.381 0.00 0.00 40.20 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 3.695606 GAGAGCAGCGTGACCCCA 61.696 66.667 0.00 0.00 0.00 4.96
258 259 4.704833 AATGACGGCGCCACTGCT 62.705 61.111 28.98 4.09 34.43 4.24
261 262 2.434884 CTCAATGACGGCGCCACT 60.435 61.111 28.98 10.89 0.00 4.00
374 375 2.604686 AGGGAGAGGAAGCACGCA 60.605 61.111 0.00 0.00 0.00 5.24
407 408 1.741032 GTCGAGACGAGGAGGACGT 60.741 63.158 0.00 0.00 46.58 4.34
408 409 1.090625 ATGTCGAGACGAGGAGGACG 61.091 60.000 0.00 0.00 36.23 4.79
409 410 0.658897 GATGTCGAGACGAGGAGGAC 59.341 60.000 0.00 0.00 36.23 3.85
410 411 0.810426 CGATGTCGAGACGAGGAGGA 60.810 60.000 0.00 0.00 43.02 3.71
476 480 2.115343 GAGGTCATCGGAAGGCTTTT 57.885 50.000 0.00 0.00 0.00 2.27
521 525 2.701780 GGCTGCTTCGAGGAGACGA 61.702 63.158 0.00 0.00 35.49 4.20
606 610 2.189521 GCGATGTCCGGGATGGTT 59.810 61.111 0.00 0.00 39.52 3.67
647 651 0.469494 TGAGGTGATGGCATACGCAT 59.531 50.000 0.00 0.00 41.24 4.73
648 652 0.251634 TTGAGGTGATGGCATACGCA 59.748 50.000 0.00 0.00 41.24 5.24
649 653 0.657840 GTTGAGGTGATGGCATACGC 59.342 55.000 0.00 0.86 37.44 4.42
650 654 0.930310 CGTTGAGGTGATGGCATACG 59.070 55.000 0.00 0.47 0.00 3.06
858 862 1.754910 GCCAGGAGGTAGGACTAGGAC 60.755 61.905 0.00 0.00 37.19 3.85
859 863 0.556747 GCCAGGAGGTAGGACTAGGA 59.443 60.000 0.00 0.00 37.19 2.94
860 864 0.470268 GGCCAGGAGGTAGGACTAGG 60.470 65.000 0.00 0.00 37.19 3.02
861 865 0.470268 GGGCCAGGAGGTAGGACTAG 60.470 65.000 4.39 0.00 37.19 2.57
862 866 1.624753 GGGCCAGGAGGTAGGACTA 59.375 63.158 4.39 0.00 37.19 2.59
863 867 2.369001 GGGCCAGGAGGTAGGACT 59.631 66.667 4.39 0.00 37.19 3.85
903 907 1.432514 CGATGATAATGCCGGTGGAG 58.567 55.000 1.90 0.00 0.00 3.86
1358 1362 4.676196 GCACCATCAAATCAGATCCAACAC 60.676 45.833 0.00 0.00 0.00 3.32
1412 1417 5.821516 ATTTGTTCGTGTTTGTTGTCCTA 57.178 34.783 0.00 0.00 0.00 2.94
1414 1419 4.859798 TCAATTTGTTCGTGTTTGTTGTCC 59.140 37.500 0.00 0.00 0.00 4.02
1417 1422 6.012482 GGTTTCAATTTGTTCGTGTTTGTTG 58.988 36.000 0.00 0.00 0.00 3.33
1418 1423 5.164041 CGGTTTCAATTTGTTCGTGTTTGTT 60.164 36.000 0.00 0.00 0.00 2.83
1420 1425 4.259610 CCGGTTTCAATTTGTTCGTGTTTG 60.260 41.667 0.00 0.00 0.00 2.93
1421 1426 3.860536 CCGGTTTCAATTTGTTCGTGTTT 59.139 39.130 0.00 0.00 0.00 2.83
1423 1428 2.424246 ACCGGTTTCAATTTGTTCGTGT 59.576 40.909 0.00 0.00 0.00 4.49
1424 1429 2.786578 CACCGGTTTCAATTTGTTCGTG 59.213 45.455 2.97 0.00 0.00 4.35
1427 1432 3.446310 ACCACCGGTTTCAATTTGTTC 57.554 42.857 2.97 0.00 27.29 3.18
1428 1433 3.955551 AGTACCACCGGTTTCAATTTGTT 59.044 39.130 2.97 0.00 37.09 2.83
1429 1434 3.558033 AGTACCACCGGTTTCAATTTGT 58.442 40.909 2.97 0.00 37.09 2.83
1430 1435 4.377635 CGTAGTACCACCGGTTTCAATTTG 60.378 45.833 2.97 0.00 37.09 2.32
1431 1436 3.747529 CGTAGTACCACCGGTTTCAATTT 59.252 43.478 2.97 0.00 37.09 1.82
1432 1437 3.244181 ACGTAGTACCACCGGTTTCAATT 60.244 43.478 2.97 0.00 41.94 2.32
1433 1438 2.299867 ACGTAGTACCACCGGTTTCAAT 59.700 45.455 2.97 0.00 41.94 2.57
1434 1439 1.686052 ACGTAGTACCACCGGTTTCAA 59.314 47.619 2.97 0.00 41.94 2.69
1435 1440 1.327303 ACGTAGTACCACCGGTTTCA 58.673 50.000 2.97 0.00 41.94 2.69
1436 1441 2.159379 CCTACGTAGTACCACCGGTTTC 60.159 54.545 20.73 0.00 45.11 2.78
1437 1442 1.818674 CCTACGTAGTACCACCGGTTT 59.181 52.381 20.73 0.00 45.11 3.27
1438 1443 1.271926 ACCTACGTAGTACCACCGGTT 60.272 52.381 20.73 0.00 45.11 4.44
1439 1444 0.328258 ACCTACGTAGTACCACCGGT 59.672 55.000 20.73 0.00 45.11 5.28
1440 1445 1.133025 CAACCTACGTAGTACCACCGG 59.867 57.143 20.73 0.00 45.11 5.28
1441 1446 1.133025 CCAACCTACGTAGTACCACCG 59.867 57.143 20.73 6.53 45.11 4.94
1442 1447 2.094545 CACCAACCTACGTAGTACCACC 60.095 54.545 20.73 0.00 45.11 4.61
1443 1448 2.672195 GCACCAACCTACGTAGTACCAC 60.672 54.545 20.73 1.29 45.11 4.16
1444 1449 1.545582 GCACCAACCTACGTAGTACCA 59.454 52.381 20.73 0.00 45.11 3.25
1445 1450 1.468054 CGCACCAACCTACGTAGTACC 60.468 57.143 20.73 2.04 45.11 3.34
1456 1461 0.240945 CAATCACTTCCGCACCAACC 59.759 55.000 0.00 0.00 0.00 3.77
1457 1462 1.234821 TCAATCACTTCCGCACCAAC 58.765 50.000 0.00 0.00 0.00 3.77
1458 1463 1.811965 CATCAATCACTTCCGCACCAA 59.188 47.619 0.00 0.00 0.00 3.67
1459 1464 1.452110 CATCAATCACTTCCGCACCA 58.548 50.000 0.00 0.00 0.00 4.17
1460 1465 0.099436 GCATCAATCACTTCCGCACC 59.901 55.000 0.00 0.00 0.00 5.01
1461 1466 1.089920 AGCATCAATCACTTCCGCAC 58.910 50.000 0.00 0.00 0.00 5.34
1462 1467 1.089112 CAGCATCAATCACTTCCGCA 58.911 50.000 0.00 0.00 0.00 5.69
1463 1468 0.379669 CCAGCATCAATCACTTCCGC 59.620 55.000 0.00 0.00 0.00 5.54
1464 1469 0.379669 GCCAGCATCAATCACTTCCG 59.620 55.000 0.00 0.00 0.00 4.30
1465 1470 0.379669 CGCCAGCATCAATCACTTCC 59.620 55.000 0.00 0.00 0.00 3.46
1466 1471 0.248377 GCGCCAGCATCAATCACTTC 60.248 55.000 0.00 0.00 44.35 3.01
1484 1489 1.068954 GTGTGTAAGAAGCAGCCAAGC 60.069 52.381 0.00 0.00 0.00 4.01
1485 1490 2.031682 GTGTGTGTAAGAAGCAGCCAAG 60.032 50.000 0.00 0.00 0.00 3.61
1498 1503 4.202070 TGAAGTGATTCACGAGTGTGTGTA 60.202 41.667 11.01 0.00 46.49 2.90
1505 1514 3.804325 CACAACTGAAGTGATTCACGAGT 59.196 43.478 11.01 11.15 39.64 4.18
1512 1521 3.648067 TCCCTCTCACAACTGAAGTGATT 59.352 43.478 7.22 0.00 44.27 2.57
1546 1555 5.924254 GCTTTACATATTCACATGCATGCAT 59.076 36.000 27.46 27.46 37.08 3.96
1547 1556 5.283294 GCTTTACATATTCACATGCATGCA 58.717 37.500 26.53 25.04 0.00 3.96
1548 1557 4.682860 GGCTTTACATATTCACATGCATGC 59.317 41.667 26.53 11.82 0.00 4.06
1559 1568 8.637986 TGACTTTGTTTTCTGGCTTTACATATT 58.362 29.630 0.00 0.00 0.00 1.28
1633 1642 2.358267 CGCGTCTAAGTACTTCATCCCT 59.642 50.000 12.39 0.00 0.00 4.20
1636 1645 6.074994 CCAAATACGCGTCTAAGTACTTCATC 60.075 42.308 18.63 2.83 0.00 2.92
1639 1648 5.004156 CACCAAATACGCGTCTAAGTACTTC 59.996 44.000 18.63 0.00 0.00 3.01
1647 1656 3.300852 TGTTCACCAAATACGCGTCTA 57.699 42.857 18.63 0.00 0.00 2.59
1648 1657 2.157834 TGTTCACCAAATACGCGTCT 57.842 45.000 18.63 1.73 0.00 4.18
1649 1658 2.475519 CCATGTTCACCAAATACGCGTC 60.476 50.000 18.63 0.00 0.00 5.19
1651 1660 1.202132 CCCATGTTCACCAAATACGCG 60.202 52.381 3.53 3.53 0.00 6.01
1653 1662 2.415357 GCACCCATGTTCACCAAATACG 60.415 50.000 0.00 0.00 0.00 3.06
1656 1665 0.602562 CGCACCCATGTTCACCAAAT 59.397 50.000 0.00 0.00 0.00 2.32
1657 1666 2.037053 CGCACCCATGTTCACCAAA 58.963 52.632 0.00 0.00 0.00 3.28
1658 1667 2.560119 GCGCACCCATGTTCACCAA 61.560 57.895 0.30 0.00 0.00 3.67
1659 1668 2.983030 GCGCACCCATGTTCACCA 60.983 61.111 0.30 0.00 0.00 4.17
1661 1670 3.353836 ACGCGCACCCATGTTCAC 61.354 61.111 5.73 0.00 0.00 3.18
1663 1672 4.759096 GCACGCGCACCCATGTTC 62.759 66.667 5.73 0.00 38.36 3.18
1673 1682 1.917782 TTCATAAAGGGTGCACGCGC 61.918 55.000 25.95 5.75 39.24 6.86
1674 1683 0.732571 ATTCATAAAGGGTGCACGCG 59.267 50.000 25.95 3.53 0.00 6.01
1675 1684 4.568152 AATATTCATAAAGGGTGCACGC 57.432 40.909 25.22 25.22 0.00 5.34
1747 1756 8.815912 TCATATGCCAGTATACATGTTGACTAT 58.184 33.333 2.30 1.74 0.00 2.12
1748 1757 8.189119 TCATATGCCAGTATACATGTTGACTA 57.811 34.615 2.30 0.00 0.00 2.59
1749 1758 7.066307 TCATATGCCAGTATACATGTTGACT 57.934 36.000 2.30 4.99 0.00 3.41
1750 1759 7.442364 ACTTCATATGCCAGTATACATGTTGAC 59.558 37.037 2.30 2.35 0.00 3.18
1751 1760 7.508687 ACTTCATATGCCAGTATACATGTTGA 58.491 34.615 2.30 0.00 0.00 3.18
1752 1761 7.734924 ACTTCATATGCCAGTATACATGTTG 57.265 36.000 2.30 0.00 0.00 3.33
1753 1762 8.752005 AAACTTCATATGCCAGTATACATGTT 57.248 30.769 2.30 0.00 0.00 2.71
1754 1763 7.992608 TGAAACTTCATATGCCAGTATACATGT 59.007 33.333 2.69 2.69 31.01 3.21
1755 1764 8.382030 TGAAACTTCATATGCCAGTATACATG 57.618 34.615 5.50 0.00 31.01 3.21
1756 1765 9.006839 CATGAAACTTCATATGCCAGTATACAT 57.993 33.333 5.50 9.79 45.62 2.29
1757 1766 8.210265 TCATGAAACTTCATATGCCAGTATACA 58.790 33.333 5.50 8.44 45.62 2.29
1758 1767 8.607441 TCATGAAACTTCATATGCCAGTATAC 57.393 34.615 4.66 0.00 45.62 1.47
1759 1768 9.276590 CTTCATGAAACTTCATATGCCAGTATA 57.723 33.333 9.88 0.36 45.62 1.47
1760 1769 7.776969 ACTTCATGAAACTTCATATGCCAGTAT 59.223 33.333 9.88 0.00 45.62 2.12
1761 1770 7.112122 ACTTCATGAAACTTCATATGCCAGTA 58.888 34.615 9.88 0.00 45.62 2.74
1762 1771 5.948162 ACTTCATGAAACTTCATATGCCAGT 59.052 36.000 9.88 0.00 45.62 4.00
1763 1772 6.446781 ACTTCATGAAACTTCATATGCCAG 57.553 37.500 9.88 0.00 45.62 4.85
1764 1773 7.936496 TTACTTCATGAAACTTCATATGCCA 57.064 32.000 9.88 0.00 45.62 4.92
1765 1774 8.623903 TGATTACTTCATGAAACTTCATATGCC 58.376 33.333 9.88 0.00 45.62 4.40
1766 1775 9.443283 GTGATTACTTCATGAAACTTCATATGC 57.557 33.333 9.88 0.00 45.62 3.14
1771 1780 7.148423 CGGATGTGATTACTTCATGAAACTTCA 60.148 37.037 9.88 7.61 42.14 3.02
1772 1781 7.148407 ACGGATGTGATTACTTCATGAAACTTC 60.148 37.037 9.88 10.44 36.54 3.01
1773 1782 6.655003 ACGGATGTGATTACTTCATGAAACTT 59.345 34.615 9.88 2.00 36.54 2.66
1774 1783 6.173339 ACGGATGTGATTACTTCATGAAACT 58.827 36.000 9.88 0.11 36.54 2.66
1775 1784 6.422776 ACGGATGTGATTACTTCATGAAAC 57.577 37.500 9.88 4.25 36.54 2.78
1791 1800 3.011566 TGCCCAAATTATCACGGATGT 57.988 42.857 0.00 0.00 0.00 3.06
1792 1801 4.383850 TTTGCCCAAATTATCACGGATG 57.616 40.909 0.00 0.00 0.00 3.51
1793 1802 5.413309 TTTTTGCCCAAATTATCACGGAT 57.587 34.783 0.00 0.00 0.00 4.18
1794 1803 4.873746 TTTTTGCCCAAATTATCACGGA 57.126 36.364 0.00 0.00 0.00 4.69
1795 1804 5.063312 GTCATTTTTGCCCAAATTATCACGG 59.937 40.000 0.00 0.00 0.00 4.94
1796 1805 5.636965 TGTCATTTTTGCCCAAATTATCACG 59.363 36.000 0.00 0.00 0.00 4.35
1797 1806 7.432350 TTGTCATTTTTGCCCAAATTATCAC 57.568 32.000 0.00 0.00 0.00 3.06
1798 1807 8.455903 TTTTGTCATTTTTGCCCAAATTATCA 57.544 26.923 0.00 0.00 0.00 2.15
1799 1808 9.558648 GATTTTGTCATTTTTGCCCAAATTATC 57.441 29.630 0.00 0.00 0.00 1.75
1800 1809 8.235905 CGATTTTGTCATTTTTGCCCAAATTAT 58.764 29.630 0.00 0.00 0.00 1.28
1801 1810 7.442364 TCGATTTTGTCATTTTTGCCCAAATTA 59.558 29.630 0.00 0.00 0.00 1.40
1802 1811 6.261826 TCGATTTTGTCATTTTTGCCCAAATT 59.738 30.769 0.00 0.00 0.00 1.82
1803 1812 5.762218 TCGATTTTGTCATTTTTGCCCAAAT 59.238 32.000 0.00 0.00 0.00 2.32
1804 1813 5.118990 TCGATTTTGTCATTTTTGCCCAAA 58.881 33.333 0.00 0.00 0.00 3.28
1805 1814 4.697514 TCGATTTTGTCATTTTTGCCCAA 58.302 34.783 0.00 0.00 0.00 4.12
1806 1815 4.327982 TCGATTTTGTCATTTTTGCCCA 57.672 36.364 0.00 0.00 0.00 5.36
1807 1816 5.236263 AGTTTCGATTTTGTCATTTTTGCCC 59.764 36.000 0.00 0.00 0.00 5.36
1808 1817 6.128729 CAGTTTCGATTTTGTCATTTTTGCC 58.871 36.000 0.00 0.00 0.00 4.52
1809 1818 6.704819 ACAGTTTCGATTTTGTCATTTTTGC 58.295 32.000 0.00 0.00 0.00 3.68
1838 1847 9.912634 CCATACTATTCATTCAACAGTGTTTTT 57.087 29.630 5.57 0.00 0.00 1.94
1839 1848 9.077885 ACCATACTATTCATTCAACAGTGTTTT 57.922 29.630 5.57 0.00 0.00 2.43
1840 1849 8.635765 ACCATACTATTCATTCAACAGTGTTT 57.364 30.769 5.57 0.00 0.00 2.83
1841 1850 7.064609 CGACCATACTATTCATTCAACAGTGTT 59.935 37.037 1.64 1.64 0.00 3.32
1842 1851 6.535150 CGACCATACTATTCATTCAACAGTGT 59.465 38.462 0.00 0.00 0.00 3.55
1843 1852 6.510157 GCGACCATACTATTCATTCAACAGTG 60.510 42.308 0.00 0.00 0.00 3.66
1844 1853 5.523916 GCGACCATACTATTCATTCAACAGT 59.476 40.000 0.00 0.00 0.00 3.55
1845 1854 5.523552 TGCGACCATACTATTCATTCAACAG 59.476 40.000 0.00 0.00 0.00 3.16
1846 1855 5.423886 TGCGACCATACTATTCATTCAACA 58.576 37.500 0.00 0.00 0.00 3.33
1847 1856 5.984233 TGCGACCATACTATTCATTCAAC 57.016 39.130 0.00 0.00 0.00 3.18
1848 1857 7.066887 ACAAATGCGACCATACTATTCATTCAA 59.933 33.333 0.00 0.00 0.00 2.69
1849 1858 6.542005 ACAAATGCGACCATACTATTCATTCA 59.458 34.615 0.00 0.00 0.00 2.57
1850 1859 6.959361 ACAAATGCGACCATACTATTCATTC 58.041 36.000 0.00 0.00 0.00 2.67
1851 1860 6.942532 ACAAATGCGACCATACTATTCATT 57.057 33.333 0.00 0.00 0.00 2.57
1852 1861 8.621532 AATACAAATGCGACCATACTATTCAT 57.378 30.769 0.00 0.00 0.00 2.57
1853 1862 8.445275 AAATACAAATGCGACCATACTATTCA 57.555 30.769 0.00 0.00 0.00 2.57
1854 1863 9.382244 GAAAATACAAATGCGACCATACTATTC 57.618 33.333 0.00 0.00 0.00 1.75
1855 1864 9.120538 AGAAAATACAAATGCGACCATACTATT 57.879 29.630 0.00 0.00 0.00 1.73
1856 1865 8.677148 AGAAAATACAAATGCGACCATACTAT 57.323 30.769 0.00 0.00 0.00 2.12
1857 1866 8.500753 AAGAAAATACAAATGCGACCATACTA 57.499 30.769 0.00 0.00 0.00 1.82
1858 1867 7.120579 TGAAGAAAATACAAATGCGACCATACT 59.879 33.333 0.00 0.00 0.00 2.12
1859 1868 7.218204 GTGAAGAAAATACAAATGCGACCATAC 59.782 37.037 0.00 0.00 0.00 2.39
1860 1869 7.120579 AGTGAAGAAAATACAAATGCGACCATA 59.879 33.333 0.00 0.00 0.00 2.74
1861 1870 6.071952 AGTGAAGAAAATACAAATGCGACCAT 60.072 34.615 0.00 0.00 0.00 3.55
1862 1871 5.240623 AGTGAAGAAAATACAAATGCGACCA 59.759 36.000 0.00 0.00 0.00 4.02
1863 1872 5.699839 AGTGAAGAAAATACAAATGCGACC 58.300 37.500 0.00 0.00 0.00 4.79
1864 1873 8.227791 TCTTAGTGAAGAAAATACAAATGCGAC 58.772 33.333 0.00 0.00 38.80 5.19
1865 1874 8.317891 TCTTAGTGAAGAAAATACAAATGCGA 57.682 30.769 0.00 0.00 38.80 5.10
1866 1875 8.948853 TTCTTAGTGAAGAAAATACAAATGCG 57.051 30.769 0.00 0.00 46.44 4.73
1876 1885 7.393234 CACCCATGGTATTCTTAGTGAAGAAAA 59.607 37.037 11.73 0.00 43.53 2.29
1877 1886 6.884295 CACCCATGGTATTCTTAGTGAAGAAA 59.116 38.462 11.73 0.00 43.53 2.52
1878 1887 6.012858 ACACCCATGGTATTCTTAGTGAAGAA 60.013 38.462 17.12 2.80 44.02 2.52
1879 1888 5.487488 ACACCCATGGTATTCTTAGTGAAGA 59.513 40.000 17.12 0.00 35.30 2.87
1880 1889 5.745227 ACACCCATGGTATTCTTAGTGAAG 58.255 41.667 17.12 0.00 33.70 3.02
1881 1890 5.249622 TGACACCCATGGTATTCTTAGTGAA 59.750 40.000 17.12 5.46 34.39 3.18
1882 1891 4.780554 TGACACCCATGGTATTCTTAGTGA 59.219 41.667 17.12 0.00 32.11 3.41
1883 1892 5.097742 TGACACCCATGGTATTCTTAGTG 57.902 43.478 11.73 11.15 32.11 2.74
1884 1893 5.772393 TTGACACCCATGGTATTCTTAGT 57.228 39.130 11.73 0.00 32.11 2.24
1885 1894 6.122277 ACATTGACACCCATGGTATTCTTAG 58.878 40.000 11.73 0.00 32.11 2.18
1886 1895 6.073447 ACATTGACACCCATGGTATTCTTA 57.927 37.500 11.73 0.00 32.11 2.10
1887 1896 4.934356 ACATTGACACCCATGGTATTCTT 58.066 39.130 11.73 0.00 32.11 2.52
1888 1897 4.591321 ACATTGACACCCATGGTATTCT 57.409 40.909 11.73 0.00 32.11 2.40
1889 1898 6.061441 TGATACATTGACACCCATGGTATTC 58.939 40.000 11.73 3.90 32.11 1.75
1890 1899 6.012337 TGATACATTGACACCCATGGTATT 57.988 37.500 11.73 0.00 32.11 1.89
1891 1900 5.645056 TGATACATTGACACCCATGGTAT 57.355 39.130 11.73 0.00 32.11 2.73
1892 1901 5.131809 TCATGATACATTGACACCCATGGTA 59.868 40.000 11.73 0.00 32.11 3.25
1893 1902 4.079844 TCATGATACATTGACACCCATGGT 60.080 41.667 11.73 0.00 35.62 3.55
1894 1903 4.463070 TCATGATACATTGACACCCATGG 58.537 43.478 4.14 4.14 33.00 3.66
1895 1904 6.095860 AGTTTCATGATACATTGACACCCATG 59.904 38.462 17.09 0.00 33.32 3.66
1896 1905 6.189859 AGTTTCATGATACATTGACACCCAT 58.810 36.000 17.09 0.00 0.00 4.00
1897 1906 5.569355 AGTTTCATGATACATTGACACCCA 58.431 37.500 17.09 0.00 0.00 4.51
1898 1907 6.150976 TGAAGTTTCATGATACATTGACACCC 59.849 38.462 17.09 0.00 31.01 4.61
1899 1908 7.023575 GTGAAGTTTCATGATACATTGACACC 58.976 38.462 17.09 0.00 39.73 4.16
1900 1909 7.535258 GTGTGAAGTTTCATGATACATTGACAC 59.465 37.037 21.16 21.16 39.73 3.67
1901 1910 7.571059 CGTGTGAAGTTTCATGATACATTGACA 60.571 37.037 17.09 14.33 39.73 3.58
1902 1911 6.738200 CGTGTGAAGTTTCATGATACATTGAC 59.262 38.462 17.09 12.48 39.73 3.18
1903 1912 6.426633 ACGTGTGAAGTTTCATGATACATTGA 59.573 34.615 17.09 2.41 39.73 2.57
1904 1913 6.520790 CACGTGTGAAGTTTCATGATACATTG 59.479 38.462 17.09 3.95 39.73 2.82
1905 1914 6.426633 TCACGTGTGAAGTTTCATGATACATT 59.573 34.615 16.51 9.13 39.73 2.71
1906 1915 5.931724 TCACGTGTGAAGTTTCATGATACAT 59.068 36.000 16.51 6.42 39.73 2.29
1907 1916 5.293560 TCACGTGTGAAGTTTCATGATACA 58.706 37.500 16.51 4.68 39.73 2.29
1908 1917 5.405571 ACTCACGTGTGAAGTTTCATGATAC 59.594 40.000 23.32 8.12 39.73 2.24
1909 1918 5.538118 ACTCACGTGTGAAGTTTCATGATA 58.462 37.500 23.32 0.00 39.73 2.15
1910 1919 4.380531 ACTCACGTGTGAAGTTTCATGAT 58.619 39.130 23.32 0.00 39.73 2.45
1911 1920 3.792401 ACTCACGTGTGAAGTTTCATGA 58.208 40.909 23.32 0.00 39.73 3.07
1912 1921 4.982295 TCTACTCACGTGTGAAGTTTCATG 59.018 41.667 23.32 5.70 39.73 3.07
1913 1922 5.196341 TCTACTCACGTGTGAAGTTTCAT 57.804 39.130 23.32 1.82 39.73 2.57
1914 1923 4.642445 TCTACTCACGTGTGAAGTTTCA 57.358 40.909 23.32 1.19 39.39 2.69
1915 1924 5.690409 TCATTCTACTCACGTGTGAAGTTTC 59.310 40.000 23.32 0.00 39.39 2.78
1916 1925 5.597806 TCATTCTACTCACGTGTGAAGTTT 58.402 37.500 23.32 3.93 39.39 2.66
1917 1926 5.196341 TCATTCTACTCACGTGTGAAGTT 57.804 39.130 23.32 4.30 39.39 2.66
1918 1927 4.848562 TCATTCTACTCACGTGTGAAGT 57.151 40.909 23.32 17.54 39.39 3.01
1919 1928 4.982295 TGTTCATTCTACTCACGTGTGAAG 59.018 41.667 23.32 12.53 39.39 3.02
1920 1929 4.939271 TGTTCATTCTACTCACGTGTGAA 58.061 39.130 23.32 16.35 39.39 3.18
1921 1930 4.577834 TGTTCATTCTACTCACGTGTGA 57.422 40.909 23.32 11.30 38.06 3.58
1922 1931 4.745125 AGTTGTTCATTCTACTCACGTGTG 59.255 41.667 16.51 16.06 0.00 3.82
1923 1932 4.945246 AGTTGTTCATTCTACTCACGTGT 58.055 39.130 16.51 0.00 0.00 4.49
1924 1933 6.641314 ACTTAGTTGTTCATTCTACTCACGTG 59.359 38.462 9.94 9.94 0.00 4.49
1925 1934 6.746120 ACTTAGTTGTTCATTCTACTCACGT 58.254 36.000 0.00 0.00 0.00 4.49
1926 1935 7.595502 AGAACTTAGTTGTTCATTCTACTCACG 59.404 37.037 0.93 0.00 46.19 4.35
1927 1936 8.819643 AGAACTTAGTTGTTCATTCTACTCAC 57.180 34.615 0.93 0.00 46.19 3.51
1930 1939 9.708092 GGTAAGAACTTAGTTGTTCATTCTACT 57.292 33.333 10.77 0.00 46.19 2.57
1931 1940 8.645487 CGGTAAGAACTTAGTTGTTCATTCTAC 58.355 37.037 10.77 3.25 46.19 2.59
1932 1941 7.330208 GCGGTAAGAACTTAGTTGTTCATTCTA 59.670 37.037 10.77 0.00 46.19 2.10
1933 1942 6.147328 GCGGTAAGAACTTAGTTGTTCATTCT 59.853 38.462 10.77 0.00 46.19 2.40
1934 1943 6.304882 GCGGTAAGAACTTAGTTGTTCATTC 58.695 40.000 10.77 1.93 46.19 2.67
1935 1944 5.107220 CGCGGTAAGAACTTAGTTGTTCATT 60.107 40.000 10.77 0.00 46.19 2.57
1936 1945 4.387862 CGCGGTAAGAACTTAGTTGTTCAT 59.612 41.667 10.77 1.13 46.19 2.57
1937 1946 3.737266 CGCGGTAAGAACTTAGTTGTTCA 59.263 43.478 10.77 0.00 46.19 3.18
1938 1947 3.983344 TCGCGGTAAGAACTTAGTTGTTC 59.017 43.478 10.77 3.89 44.67 3.18
1939 1948 3.981211 TCGCGGTAAGAACTTAGTTGTT 58.019 40.909 12.04 12.04 33.68 2.83
1940 1949 3.648339 TCGCGGTAAGAACTTAGTTGT 57.352 42.857 6.13 0.00 0.00 3.32
1941 1950 4.977741 TTTCGCGGTAAGAACTTAGTTG 57.022 40.909 6.13 0.00 0.00 3.16
1942 1951 6.203338 TGAAATTTCGCGGTAAGAACTTAGTT 59.797 34.615 13.34 0.00 0.00 2.24
1943 1952 5.697633 TGAAATTTCGCGGTAAGAACTTAGT 59.302 36.000 13.34 0.00 0.00 2.24
1944 1953 6.090358 TCTGAAATTTCGCGGTAAGAACTTAG 59.910 38.462 13.34 0.63 0.00 2.18
1945 1954 5.927689 TCTGAAATTTCGCGGTAAGAACTTA 59.072 36.000 13.34 0.00 0.00 2.24
1946 1955 4.753107 TCTGAAATTTCGCGGTAAGAACTT 59.247 37.500 13.34 0.00 0.00 2.66
1947 1956 4.312443 TCTGAAATTTCGCGGTAAGAACT 58.688 39.130 13.34 0.00 0.00 3.01
1948 1957 4.657075 TCTGAAATTTCGCGGTAAGAAC 57.343 40.909 13.34 0.00 0.00 3.01
1949 1958 5.873179 ATTCTGAAATTTCGCGGTAAGAA 57.127 34.783 13.34 14.28 0.00 2.52
1950 1959 5.873179 AATTCTGAAATTTCGCGGTAAGA 57.127 34.783 13.34 6.63 30.79 2.10
1951 1960 6.927933 AAAATTCTGAAATTTCGCGGTAAG 57.072 33.333 13.34 4.40 42.82 2.34
1952 1961 7.142680 AGAAAAATTCTGAAATTTCGCGGTAA 58.857 30.769 13.34 0.91 42.82 2.85
1953 1962 6.674066 AGAAAAATTCTGAAATTTCGCGGTA 58.326 32.000 13.34 0.00 42.82 4.02
1954 1963 5.528870 AGAAAAATTCTGAAATTTCGCGGT 58.471 33.333 13.34 0.00 42.82 5.68
1955 1964 6.452244 AAGAAAAATTCTGAAATTTCGCGG 57.548 33.333 13.34 6.51 42.82 6.46
1996 2005 9.669887 ACCCACGTGAATAGTAAATACATAAAA 57.330 29.630 19.30 0.00 0.00 1.52
1997 2006 9.100554 CACCCACGTGAATAGTAAATACATAAA 57.899 33.333 19.30 0.00 43.14 1.40
1998 2007 7.225145 GCACCCACGTGAATAGTAAATACATAA 59.775 37.037 19.30 0.00 43.14 1.90
1999 2008 6.702723 GCACCCACGTGAATAGTAAATACATA 59.297 38.462 19.30 0.00 43.14 2.29
2000 2009 5.526111 GCACCCACGTGAATAGTAAATACAT 59.474 40.000 19.30 0.00 43.14 2.29
2001 2010 4.871557 GCACCCACGTGAATAGTAAATACA 59.128 41.667 19.30 0.00 43.14 2.29
2002 2011 4.026310 CGCACCCACGTGAATAGTAAATAC 60.026 45.833 19.30 0.00 43.14 1.89
2003 2012 4.114073 CGCACCCACGTGAATAGTAAATA 58.886 43.478 19.30 0.00 43.14 1.40
2004 2013 2.933906 CGCACCCACGTGAATAGTAAAT 59.066 45.455 19.30 0.00 43.14 1.40
2005 2014 2.339418 CGCACCCACGTGAATAGTAAA 58.661 47.619 19.30 0.00 43.14 2.01
2006 2015 1.999048 CGCACCCACGTGAATAGTAA 58.001 50.000 19.30 0.00 43.14 2.24
2007 2016 0.458889 GCGCACCCACGTGAATAGTA 60.459 55.000 19.30 0.00 43.14 1.82
2008 2017 1.740296 GCGCACCCACGTGAATAGT 60.740 57.895 19.30 5.88 43.14 2.12
2009 2018 2.798501 CGCGCACCCACGTGAATAG 61.799 63.158 19.30 5.19 46.13 1.73
2010 2019 2.811747 CGCGCACCCACGTGAATA 60.812 61.111 19.30 0.00 46.13 1.75
2023 2032 4.519274 TGAACATGATGCGCGCGC 62.519 61.111 45.02 45.02 42.35 6.86
2024 2033 2.645628 GTGAACATGATGCGCGCG 60.646 61.111 28.44 28.44 0.00 6.86
2025 2034 2.257286 AAGGTGAACATGATGCGCGC 62.257 55.000 27.26 27.26 0.00 6.86
2026 2035 0.168788 AAAGGTGAACATGATGCGCG 59.831 50.000 0.00 0.00 0.00 6.86
2027 2036 1.068333 ACAAAGGTGAACATGATGCGC 60.068 47.619 0.00 0.00 0.00 6.09
2028 2037 2.995466 ACAAAGGTGAACATGATGCG 57.005 45.000 0.00 0.00 0.00 4.73
2029 2038 6.033831 CGAAAATACAAAGGTGAACATGATGC 59.966 38.462 0.00 0.00 0.00 3.91
2030 2039 7.304735 TCGAAAATACAAAGGTGAACATGATG 58.695 34.615 0.00 0.00 0.00 3.07
2031 2040 7.447374 TCGAAAATACAAAGGTGAACATGAT 57.553 32.000 0.00 0.00 0.00 2.45
2032 2041 6.869315 TCGAAAATACAAAGGTGAACATGA 57.131 33.333 0.00 0.00 0.00 3.07
2033 2042 7.304735 TCATCGAAAATACAAAGGTGAACATG 58.695 34.615 0.00 0.00 0.00 3.21
2034 2043 7.447374 TCATCGAAAATACAAAGGTGAACAT 57.553 32.000 0.00 0.00 0.00 2.71
2035 2044 6.869315 TCATCGAAAATACAAAGGTGAACA 57.131 33.333 0.00 0.00 0.00 3.18
2036 2045 7.360361 ACTTCATCGAAAATACAAAGGTGAAC 58.640 34.615 0.00 0.00 0.00 3.18
2037 2046 7.504924 ACTTCATCGAAAATACAAAGGTGAA 57.495 32.000 0.00 0.00 0.00 3.18
2038 2047 7.876068 AGTACTTCATCGAAAATACAAAGGTGA 59.124 33.333 0.00 0.00 0.00 4.02
2039 2048 8.029642 AGTACTTCATCGAAAATACAAAGGTG 57.970 34.615 0.00 0.00 0.00 4.00
2040 2049 8.617290 AAGTACTTCATCGAAAATACAAAGGT 57.383 30.769 1.12 0.00 0.00 3.50
2041 2050 8.936864 AGAAGTACTTCATCGAAAATACAAAGG 58.063 33.333 31.80 0.00 41.84 3.11
2042 2051 9.959775 GAGAAGTACTTCATCGAAAATACAAAG 57.040 33.333 31.80 0.00 41.84 2.77
2043 2052 9.706691 AGAGAAGTACTTCATCGAAAATACAAA 57.293 29.630 31.80 0.00 41.84 2.83
2092 2101 9.884636 AAGCATTTACTCATATGTACTTGTACA 57.115 29.630 14.82 14.82 0.00 2.90
2101 2110 9.935682 CGTGAATTAAAGCATTTACTCATATGT 57.064 29.630 1.90 0.00 40.86 2.29
2102 2111 9.385902 CCGTGAATTAAAGCATTTACTCATATG 57.614 33.333 0.00 0.00 40.86 1.78
2103 2112 9.337396 TCCGTGAATTAAAGCATTTACTCATAT 57.663 29.630 0.00 0.00 40.86 1.78
2104 2113 8.725405 TCCGTGAATTAAAGCATTTACTCATA 57.275 30.769 0.00 0.00 40.86 2.15
2105 2114 7.624360 TCCGTGAATTAAAGCATTTACTCAT 57.376 32.000 0.00 0.00 40.86 2.90
2106 2115 7.441890 TTCCGTGAATTAAAGCATTTACTCA 57.558 32.000 0.00 0.00 40.86 3.41
2107 2116 8.021396 AGTTTCCGTGAATTAAAGCATTTACTC 58.979 33.333 0.00 0.00 40.86 2.59
2108 2117 7.882179 AGTTTCCGTGAATTAAAGCATTTACT 58.118 30.769 0.00 0.00 40.86 2.24
2109 2118 8.021396 AGAGTTTCCGTGAATTAAAGCATTTAC 58.979 33.333 0.00 0.00 40.86 2.01
2110 2119 8.106247 AGAGTTTCCGTGAATTAAAGCATTTA 57.894 30.769 0.00 0.00 40.09 1.40
2111 2120 6.981722 AGAGTTTCCGTGAATTAAAGCATTT 58.018 32.000 0.00 0.00 43.42 2.32
2112 2121 6.431234 AGAGAGTTTCCGTGAATTAAAGCATT 59.569 34.615 0.00 0.00 0.00 3.56
2113 2122 5.940470 AGAGAGTTTCCGTGAATTAAAGCAT 59.060 36.000 0.00 0.00 0.00 3.79
2114 2123 5.305585 AGAGAGTTTCCGTGAATTAAAGCA 58.694 37.500 0.00 0.00 0.00 3.91
2115 2124 5.408604 TGAGAGAGTTTCCGTGAATTAAAGC 59.591 40.000 0.00 0.00 0.00 3.51
2116 2125 7.421530 TTGAGAGAGTTTCCGTGAATTAAAG 57.578 36.000 0.00 0.00 0.00 1.85
2117 2126 7.659799 TGATTGAGAGAGTTTCCGTGAATTAAA 59.340 33.333 0.00 0.00 0.00 1.52
2118 2127 7.158697 TGATTGAGAGAGTTTCCGTGAATTAA 58.841 34.615 0.00 0.00 0.00 1.40
2119 2128 6.697395 TGATTGAGAGAGTTTCCGTGAATTA 58.303 36.000 0.00 0.00 0.00 1.40
2120 2129 5.551233 TGATTGAGAGAGTTTCCGTGAATT 58.449 37.500 0.00 0.00 0.00 2.17
2121 2130 5.152623 TGATTGAGAGAGTTTCCGTGAAT 57.847 39.130 0.00 0.00 0.00 2.57
2122 2131 4.600692 TGATTGAGAGAGTTTCCGTGAA 57.399 40.909 0.00 0.00 0.00 3.18
2123 2132 4.600692 TTGATTGAGAGAGTTTCCGTGA 57.399 40.909 0.00 0.00 0.00 4.35
2124 2133 5.409520 TCAATTGATTGAGAGAGTTTCCGTG 59.590 40.000 3.38 0.00 41.51 4.94
2125 2134 5.551233 TCAATTGATTGAGAGAGTTTCCGT 58.449 37.500 3.38 0.00 41.51 4.69
2137 2146 8.634335 TCAAATTAGTGACCTCAATTGATTGA 57.366 30.769 8.96 8.88 43.94 2.57
2138 2147 8.733458 TCTCAAATTAGTGACCTCAATTGATTG 58.267 33.333 8.96 6.67 39.10 2.67
2139 2148 8.734386 GTCTCAAATTAGTGACCTCAATTGATT 58.266 33.333 8.96 0.00 0.00 2.57
2140 2149 8.105829 AGTCTCAAATTAGTGACCTCAATTGAT 58.894 33.333 8.96 0.00 33.66 2.57
2153 2162 9.471702 AAATCATGGATCAAGTCTCAAATTAGT 57.528 29.630 0.00 0.00 0.00 2.24
2191 2200 0.037697 TTCCACAGAACATAGCGCGT 60.038 50.000 8.43 0.00 0.00 6.01
2192 2201 1.290203 ATTCCACAGAACATAGCGCG 58.710 50.000 0.00 0.00 33.97 6.86
2195 2204 5.762218 AGCAGATAATTCCACAGAACATAGC 59.238 40.000 0.00 0.00 33.97 2.97
2196 2205 6.988580 TCAGCAGATAATTCCACAGAACATAG 59.011 38.462 0.00 0.00 33.97 2.23
2198 2207 5.587844 GTCAGCAGATAATTCCACAGAACAT 59.412 40.000 0.00 0.00 33.97 2.71
2203 2212 2.868583 CCGTCAGCAGATAATTCCACAG 59.131 50.000 0.00 0.00 0.00 3.66
2210 2219 0.469917 CCCACCCGTCAGCAGATAAT 59.530 55.000 0.00 0.00 0.00 1.28
2219 3938 2.203280 CAACAAGCCCACCCGTCA 60.203 61.111 0.00 0.00 0.00 4.35
2222 3941 1.674322 CTACCAACAAGCCCACCCG 60.674 63.158 0.00 0.00 0.00 5.28
2225 3944 0.893727 CCACCTACCAACAAGCCCAC 60.894 60.000 0.00 0.00 0.00 4.61
2237 3956 3.606687 CCTTCACCATACAACCACCTAC 58.393 50.000 0.00 0.00 0.00 3.18
2242 3961 4.724293 TCATATCCCTTCACCATACAACCA 59.276 41.667 0.00 0.00 0.00 3.67
2243 3962 5.163195 ACTCATATCCCTTCACCATACAACC 60.163 44.000 0.00 0.00 0.00 3.77
2244 3963 5.930135 ACTCATATCCCTTCACCATACAAC 58.070 41.667 0.00 0.00 0.00 3.32
2245 3964 6.157820 TCAACTCATATCCCTTCACCATACAA 59.842 38.462 0.00 0.00 0.00 2.41
2246 3965 5.665360 TCAACTCATATCCCTTCACCATACA 59.335 40.000 0.00 0.00 0.00 2.29
2247 3966 6.174720 TCAACTCATATCCCTTCACCATAC 57.825 41.667 0.00 0.00 0.00 2.39
2255 3974 4.446889 GCCCTGAATCAACTCATATCCCTT 60.447 45.833 0.00 0.00 0.00 3.95
2258 3977 4.090761 TGCCCTGAATCAACTCATATCC 57.909 45.455 0.00 0.00 0.00 2.59
2265 3984 4.344679 TGAAATTGTTGCCCTGAATCAACT 59.655 37.500 6.65 0.00 42.11 3.16
2268 3987 4.588106 TCTTGAAATTGTTGCCCTGAATCA 59.412 37.500 0.00 0.00 0.00 2.57
2273 3992 2.680577 GCTCTTGAAATTGTTGCCCTG 58.319 47.619 0.00 0.00 0.00 4.45
2294 4013 5.886960 AAACAAACTCCAGAGTGATATGC 57.113 39.130 0.05 0.00 41.58 3.14
2299 4018 3.620488 AGCAAAACAAACTCCAGAGTGA 58.380 40.909 0.05 0.00 41.58 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.