Multiple sequence alignment - TraesCS5D01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G028000 chr5D 100.000 3856 0 0 1 3856 26784277 26788132 0.000000e+00 7121.0
1 TraesCS5D01G028000 chr5D 84.526 685 78 19 1007 1677 26507944 26507274 0.000000e+00 652.0
2 TraesCS5D01G028000 chr5D 81.662 698 90 18 996 1677 26523331 26522656 2.620000e-151 545.0
3 TraesCS5D01G028000 chr5D 84.586 532 71 6 1153 1677 26682415 26681888 5.710000e-143 518.0
4 TraesCS5D01G028000 chr5D 82.688 439 64 10 1245 1677 26474491 26474059 2.810000e-101 379.0
5 TraesCS5D01G028000 chr5D 85.124 121 9 8 990 1110 26682536 26682425 8.750000e-22 115.0
6 TraesCS5D01G028000 chr5D 90.476 42 4 0 2261 2302 50000809 50000850 5.380000e-04 56.5
7 TraesCS5D01G028000 chr5D 90.476 42 4 0 2261 2302 50166277 50166318 5.380000e-04 56.5
8 TraesCS5D01G028000 chr5A 91.730 1306 49 21 449 1709 18575528 18576819 0.000000e+00 1759.0
9 TraesCS5D01G028000 chr5A 96.516 488 14 2 2376 2863 18577425 18577909 0.000000e+00 804.0
10 TraesCS5D01G028000 chr5A 83.427 712 88 21 981 1677 18394994 18395690 5.430000e-178 634.0
11 TraesCS5D01G028000 chr5A 92.342 444 33 1 3281 3724 18630516 18630958 7.030000e-177 630.0
12 TraesCS5D01G028000 chr5A 82.902 696 91 20 990 1677 18572651 18571976 5.510000e-168 601.0
13 TraesCS5D01G028000 chr5A 92.182 307 19 4 1 306 18575226 18575528 2.750000e-116 429.0
14 TraesCS5D01G028000 chr5A 95.492 244 8 3 2922 3164 18577907 18578148 1.680000e-103 387.0
15 TraesCS5D01G028000 chr5A 88.889 279 25 3 2113 2389 18577132 18577406 4.770000e-89 339.0
16 TraesCS5D01G028000 chr5A 90.769 130 12 0 1876 2005 18576823 18576952 1.420000e-39 174.0
17 TraesCS5D01G028000 chr5A 88.636 88 3 2 3769 3856 18632708 18632788 2.450000e-17 100.0
18 TraesCS5D01G028000 chr5A 87.324 71 2 1 3160 3230 18630458 18630521 1.490000e-09 75.0
19 TraesCS5D01G028000 chr5A 82.716 81 11 3 2260 2338 280768959 280768880 6.910000e-08 69.4
20 TraesCS5D01G028000 chr5B 83.219 727 80 25 976 1677 18664628 18665337 2.530000e-176 628.0
21 TraesCS5D01G028000 chr5B 83.381 698 81 19 994 1677 18775845 18776521 7.080000e-172 614.0
22 TraesCS5D01G028000 chr5B 83.404 235 26 10 3364 3587 63243903 63243671 5.050000e-49 206.0
23 TraesCS5D01G028000 chr5B 82.203 236 29 6 3429 3655 19437323 19437554 1.410000e-44 191.0
24 TraesCS5D01G028000 chr7A 81.029 311 43 13 3288 3587 43250818 43250513 2.320000e-57 233.0
25 TraesCS5D01G028000 chr7A 93.939 66 4 0 2858 2923 735744231 735744296 2.450000e-17 100.0
26 TraesCS5D01G028000 chr7A 93.939 66 4 0 2858 2923 735777128 735777193 2.450000e-17 100.0
27 TraesCS5D01G028000 chr7A 84.146 82 7 6 2257 2334 68321831 68321752 1.490000e-09 75.0
28 TraesCS5D01G028000 chr7A 80.519 77 13 2 2264 2338 182560699 182560623 1.500000e-04 58.4
29 TraesCS5D01G028000 chr2A 86.765 204 23 4 3333 3535 703565113 703564913 1.390000e-54 224.0
30 TraesCS5D01G028000 chr3B 79.114 316 44 13 3285 3587 652799913 652799607 8.450000e-47 198.0
31 TraesCS5D01G028000 chr3B 80.377 265 42 8 3294 3554 602283130 602283388 3.930000e-45 193.0
32 TraesCS5D01G028000 chr3B 96.774 62 2 0 2862 2923 809603237 809603298 1.890000e-18 104.0
33 TraesCS5D01G028000 chr6D 80.545 257 42 7 3288 3540 9373338 9373086 1.410000e-44 191.0
34 TraesCS5D01G028000 chr6D 79.545 88 14 4 2256 2340 226017626 226017712 4.160000e-05 60.2
35 TraesCS5D01G028000 chr2D 80.153 262 45 5 3286 3543 166142103 166142361 5.090000e-44 189.0
36 TraesCS5D01G028000 chr2D 86.139 101 8 4 1735 1835 36796206 36796300 1.890000e-18 104.0
37 TraesCS5D01G028000 chr3A 78.618 304 49 10 3294 3587 598539173 598539470 1.830000e-43 187.0
38 TraesCS5D01G028000 chr3A 87.912 91 6 4 1750 1840 747871917 747871832 6.820000e-18 102.0
39 TraesCS5D01G028000 chr1A 90.426 94 4 2 1748 1841 551582343 551582255 6.770000e-23 119.0
40 TraesCS5D01G028000 chr1A 91.667 72 5 1 2854 2924 85036545 85036616 8.820000e-17 99.0
41 TraesCS5D01G028000 chr1A 81.707 82 9 4 2261 2338 462341123 462341202 3.220000e-06 63.9
42 TraesCS5D01G028000 chr1A 79.221 77 14 2 2264 2338 206152957 206152881 7.000000e-03 52.8
43 TraesCS5D01G028000 chr4D 89.011 91 5 3 1749 1839 324227761 324227846 1.460000e-19 108.0
44 TraesCS5D01G028000 chr7B 88.043 92 5 4 1748 1839 7562503 7562418 1.890000e-18 104.0
45 TraesCS5D01G028000 chr7B 84.466 103 9 5 1738 1840 348195800 348195895 1.140000e-15 95.3
46 TraesCS5D01G028000 chr7B 81.250 80 13 2 2261 2338 466277735 466277814 3.220000e-06 63.9
47 TraesCS5D01G028000 chr6B 93.151 73 2 3 2854 2924 49622745 49622816 1.890000e-18 104.0
48 TraesCS5D01G028000 chr6B 95.385 65 2 1 2861 2924 49622815 49622751 6.820000e-18 102.0
49 TraesCS5D01G028000 chr6B 86.957 92 7 3 1749 1840 713833468 713833554 8.820000e-17 99.0
50 TraesCS5D01G028000 chr1D 87.912 91 6 3 1749 1839 245217278 245217193 6.820000e-18 102.0
51 TraesCS5D01G028000 chr1D 87.342 79 8 2 2264 2340 108694595 108694673 5.310000e-14 89.8
52 TraesCS5D01G028000 chr1B 95.312 64 2 1 2861 2923 586281816 586281753 2.450000e-17 100.0
53 TraesCS5D01G028000 chr1B 91.549 71 5 1 2854 2923 24605086 24605016 3.170000e-16 97.1
54 TraesCS5D01G028000 chrUn 86.957 92 7 3 1748 1839 362465039 362464953 8.820000e-17 99.0
55 TraesCS5D01G028000 chr6A 89.610 77 5 3 2849 2923 15702844 15702769 1.140000e-15 95.3
56 TraesCS5D01G028000 chr6A 100.000 31 0 0 2255 2285 437953784 437953814 1.500000e-04 58.4
57 TraesCS5D01G028000 chr7D 82.927 82 8 6 2257 2334 64469212 64469133 6.910000e-08 69.4
58 TraesCS5D01G028000 chr4A 82.278 79 8 4 2264 2338 113303543 113303467 3.220000e-06 63.9
59 TraesCS5D01G028000 chr4A 79.121 91 15 4 2256 2343 119089660 119089571 4.160000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G028000 chr5D 26784277 26788132 3855 False 7121.000000 7121 100.000000 1 3856 1 chr5D.!!$F1 3855
1 TraesCS5D01G028000 chr5D 26507274 26507944 670 True 652.000000 652 84.526000 1007 1677 1 chr5D.!!$R2 670
2 TraesCS5D01G028000 chr5D 26522656 26523331 675 True 545.000000 545 81.662000 996 1677 1 chr5D.!!$R3 681
3 TraesCS5D01G028000 chr5D 26681888 26682536 648 True 316.500000 518 84.855000 990 1677 2 chr5D.!!$R4 687
4 TraesCS5D01G028000 chr5A 18575226 18578148 2922 False 648.666667 1759 92.596333 1 3164 6 chr5A.!!$F2 3163
5 TraesCS5D01G028000 chr5A 18394994 18395690 696 False 634.000000 634 83.427000 981 1677 1 chr5A.!!$F1 696
6 TraesCS5D01G028000 chr5A 18571976 18572651 675 True 601.000000 601 82.902000 990 1677 1 chr5A.!!$R1 687
7 TraesCS5D01G028000 chr5A 18630458 18632788 2330 False 268.333333 630 89.434000 3160 3856 3 chr5A.!!$F3 696
8 TraesCS5D01G028000 chr5B 18664628 18665337 709 False 628.000000 628 83.219000 976 1677 1 chr5B.!!$F1 701
9 TraesCS5D01G028000 chr5B 18775845 18776521 676 False 614.000000 614 83.381000 994 1677 1 chr5B.!!$F2 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 843 1.202087 CCATCGATCGCTCTCGGATAC 60.202 57.143 11.09 0.0 39.13 2.24 F
1991 2081 0.323957 GTTCCTACGCCCAACCTTCT 59.676 55.000 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2489 0.031111 TGGGGTGGTCATAGAGGGAG 60.031 60.0 0.0 0.0 0.0 4.30 R
3671 3867 0.179073 CAGGGTGCTTCGTCCATAGG 60.179 60.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 5.818336 TGTTCGTGACATCTAAAAAGGTCAA 59.182 36.000 0.00 0.00 41.45 3.18
129 130 5.369685 AATGTGCGTGAAATGTGTGATTA 57.630 34.783 0.00 0.00 0.00 1.75
174 176 9.791838 CAAAAGAAACTGTAACACTTCAAAAAC 57.208 29.630 0.00 0.00 0.00 2.43
189 191 8.855279 CACTTCAAAAACGTTCATGAGTTTAAA 58.145 29.630 12.07 7.63 39.36 1.52
218 220 8.534333 TGTGTTTGCAACATTTACAAAAAGTA 57.466 26.923 0.00 0.00 44.35 2.24
221 223 9.155975 TGTTTGCAACATTTACAAAAAGTATGT 57.844 25.926 0.00 0.00 36.25 2.29
366 368 8.776376 AATGTTCTTGTTGTTTTCAGAAATGT 57.224 26.923 0.00 0.00 0.00 2.71
367 369 7.810766 TGTTCTTGTTGTTTTCAGAAATGTC 57.189 32.000 0.00 0.00 0.00 3.06
368 370 7.601856 TGTTCTTGTTGTTTTCAGAAATGTCT 58.398 30.769 0.00 0.00 32.85 3.41
369 371 7.754924 TGTTCTTGTTGTTTTCAGAAATGTCTC 59.245 33.333 0.00 0.00 28.78 3.36
370 372 7.630242 TCTTGTTGTTTTCAGAAATGTCTCT 57.370 32.000 0.00 0.00 28.78 3.10
371 373 8.055279 TCTTGTTGTTTTCAGAAATGTCTCTT 57.945 30.769 0.00 0.00 28.78 2.85
372 374 7.970061 TCTTGTTGTTTTCAGAAATGTCTCTTG 59.030 33.333 0.00 0.00 28.78 3.02
373 375 7.156876 TGTTGTTTTCAGAAATGTCTCTTGT 57.843 32.000 0.00 0.00 28.78 3.16
374 376 7.250569 TGTTGTTTTCAGAAATGTCTCTTGTC 58.749 34.615 0.00 0.00 28.78 3.18
375 377 7.094420 TGTTGTTTTCAGAAATGTCTCTTGTCA 60.094 33.333 0.00 0.00 28.78 3.58
376 378 7.572523 TGTTTTCAGAAATGTCTCTTGTCAT 57.427 32.000 0.00 0.00 28.78 3.06
377 379 7.999679 TGTTTTCAGAAATGTCTCTTGTCATT 58.000 30.769 0.00 0.00 34.39 2.57
378 380 9.119418 TGTTTTCAGAAATGTCTCTTGTCATTA 57.881 29.630 0.00 0.00 33.06 1.90
379 381 9.950680 GTTTTCAGAAATGTCTCTTGTCATTAA 57.049 29.630 0.00 0.00 33.06 1.40
490 492 3.822594 TGAAAAATGTCGCAAGCGTAT 57.177 38.095 14.57 7.63 40.74 3.06
500 502 3.659444 GTCGCAAGCGTATCAAAATATGC 59.341 43.478 14.57 2.15 46.50 3.14
530 532 6.931840 TGTGTGTGCTAGAAATGTACATTGTA 59.068 34.615 21.46 14.47 33.11 2.41
590 592 6.156519 ACGGATTAAAATCAGCAAAGAAACC 58.843 36.000 5.15 0.00 37.15 3.27
594 596 8.282592 GGATTAAAATCAGCAAAGAAACCAAAC 58.717 33.333 5.15 0.00 37.15 2.93
640 642 6.056428 ACAAATGAAAACCGAGAGTACAAC 57.944 37.500 0.00 0.00 0.00 3.32
643 645 5.668558 ATGAAAACCGAGAGTACAACAAC 57.331 39.130 0.00 0.00 0.00 3.32
644 646 4.505808 TGAAAACCGAGAGTACAACAACA 58.494 39.130 0.00 0.00 0.00 3.33
645 647 4.936411 TGAAAACCGAGAGTACAACAACAA 59.064 37.500 0.00 0.00 0.00 2.83
646 648 4.870221 AAACCGAGAGTACAACAACAAC 57.130 40.909 0.00 0.00 0.00 3.32
650 659 4.696402 ACCGAGAGTACAACAACAACAAAA 59.304 37.500 0.00 0.00 0.00 2.44
697 706 9.341078 AGTATTACGAAGGTAAAAAGAAAACCA 57.659 29.630 0.00 0.00 41.66 3.67
698 707 9.949174 GTATTACGAAGGTAAAAAGAAAACCAA 57.051 29.630 0.00 0.00 41.66 3.67
788 799 5.440685 CAAAGCGAACAAACCTACAACTAG 58.559 41.667 0.00 0.00 0.00 2.57
830 841 1.590610 CCCATCGATCGCTCTCGGAT 61.591 60.000 11.09 0.00 39.13 4.18
832 843 1.202087 CCATCGATCGCTCTCGGATAC 60.202 57.143 11.09 0.00 39.13 2.24
876 887 4.308526 GACTCGTCGACCTACCCA 57.691 61.111 10.58 0.00 0.00 4.51
985 1026 1.799519 CGATCGATAGGAGCAGCGC 60.800 63.158 10.26 0.00 0.00 5.92
1631 1716 4.379243 CACCGGCCTGCTCGACTT 62.379 66.667 0.00 0.00 0.00 3.01
1709 1799 2.594131 GCAGGGTTTCAGGTTTAGGTT 58.406 47.619 0.00 0.00 0.00 3.50
1711 1801 3.827722 CAGGGTTTCAGGTTTAGGTTCA 58.172 45.455 0.00 0.00 0.00 3.18
1712 1802 4.407365 CAGGGTTTCAGGTTTAGGTTCAT 58.593 43.478 0.00 0.00 0.00 2.57
1713 1803 4.832823 CAGGGTTTCAGGTTTAGGTTCATT 59.167 41.667 0.00 0.00 0.00 2.57
1714 1804 5.304357 CAGGGTTTCAGGTTTAGGTTCATTT 59.696 40.000 0.00 0.00 0.00 2.32
1715 1805 5.304357 AGGGTTTCAGGTTTAGGTTCATTTG 59.696 40.000 0.00 0.00 0.00 2.32
1716 1806 5.510690 GGGTTTCAGGTTTAGGTTCATTTGG 60.511 44.000 0.00 0.00 0.00 3.28
1717 1807 5.303333 GGTTTCAGGTTTAGGTTCATTTGGA 59.697 40.000 0.00 0.00 0.00 3.53
1718 1808 6.014584 GGTTTCAGGTTTAGGTTCATTTGGAT 60.015 38.462 0.00 0.00 0.00 3.41
1719 1809 7.441836 GTTTCAGGTTTAGGTTCATTTGGATT 58.558 34.615 0.00 0.00 0.00 3.01
1720 1810 8.581578 GTTTCAGGTTTAGGTTCATTTGGATTA 58.418 33.333 0.00 0.00 0.00 1.75
1721 1811 8.893563 TTCAGGTTTAGGTTCATTTGGATTAT 57.106 30.769 0.00 0.00 0.00 1.28
1722 1812 8.893563 TCAGGTTTAGGTTCATTTGGATTATT 57.106 30.769 0.00 0.00 0.00 1.40
1723 1813 8.748412 TCAGGTTTAGGTTCATTTGGATTATTG 58.252 33.333 0.00 0.00 0.00 1.90
1724 1814 7.981225 CAGGTTTAGGTTCATTTGGATTATTGG 59.019 37.037 0.00 0.00 0.00 3.16
1725 1815 6.761242 GGTTTAGGTTCATTTGGATTATTGGC 59.239 38.462 0.00 0.00 0.00 4.52
1726 1816 7.364673 GGTTTAGGTTCATTTGGATTATTGGCT 60.365 37.037 0.00 0.00 0.00 4.75
1727 1817 8.691797 GTTTAGGTTCATTTGGATTATTGGCTA 58.308 33.333 0.00 0.00 0.00 3.93
1728 1818 6.966534 AGGTTCATTTGGATTATTGGCTAG 57.033 37.500 0.00 0.00 0.00 3.42
1729 1819 5.302823 AGGTTCATTTGGATTATTGGCTAGC 59.697 40.000 6.04 6.04 0.00 3.42
1730 1820 5.302823 GGTTCATTTGGATTATTGGCTAGCT 59.697 40.000 15.72 0.00 0.00 3.32
1731 1821 6.490040 GGTTCATTTGGATTATTGGCTAGCTA 59.510 38.462 15.72 5.44 0.00 3.32
1732 1822 7.177392 GGTTCATTTGGATTATTGGCTAGCTAT 59.823 37.037 15.72 11.01 0.00 2.97
1733 1823 7.692460 TCATTTGGATTATTGGCTAGCTATG 57.308 36.000 15.72 0.00 0.00 2.23
1734 1824 7.233632 TCATTTGGATTATTGGCTAGCTATGT 58.766 34.615 15.72 3.18 0.00 2.29
1735 1825 8.382405 TCATTTGGATTATTGGCTAGCTATGTA 58.618 33.333 15.72 2.16 0.00 2.29
1736 1826 8.671921 CATTTGGATTATTGGCTAGCTATGTAG 58.328 37.037 15.72 0.00 0.00 2.74
1737 1827 6.935240 TGGATTATTGGCTAGCTATGTAGT 57.065 37.500 15.72 1.91 0.00 2.73
1738 1828 8.430573 TTGGATTATTGGCTAGCTATGTAGTA 57.569 34.615 15.72 0.00 0.00 1.82
1739 1829 8.430573 TGGATTATTGGCTAGCTATGTAGTAA 57.569 34.615 15.72 5.40 0.00 2.24
1740 1830 9.046846 TGGATTATTGGCTAGCTATGTAGTAAT 57.953 33.333 15.72 9.52 0.00 1.89
1745 1835 7.698506 TTGGCTAGCTATGTAGTAATATCGT 57.301 36.000 15.72 0.00 0.00 3.73
1746 1836 8.797350 TTGGCTAGCTATGTAGTAATATCGTA 57.203 34.615 15.72 0.00 0.00 3.43
1747 1837 8.434733 TGGCTAGCTATGTAGTAATATCGTAG 57.565 38.462 15.72 0.00 0.00 3.51
1748 1838 8.045507 TGGCTAGCTATGTAGTAATATCGTAGT 58.954 37.037 15.72 0.00 0.00 2.73
1749 1839 9.539825 GGCTAGCTATGTAGTAATATCGTAGTA 57.460 37.037 15.72 0.00 0.00 1.82
1753 1843 9.598517 AGCTATGTAGTAATATCGTAGTACTCC 57.401 37.037 0.00 0.00 39.85 3.85
1754 1844 8.825745 GCTATGTAGTAATATCGTAGTACTCCC 58.174 40.741 0.00 0.00 39.85 4.30
1757 1847 8.200024 TGTAGTAATATCGTAGTACTCCCTCT 57.800 38.462 0.00 0.00 39.85 3.69
1758 1848 9.314133 TGTAGTAATATCGTAGTACTCCCTCTA 57.686 37.037 0.00 0.00 39.85 2.43
1767 1857 9.810870 ATCGTAGTACTCCCTCTATAAAGAAAT 57.189 33.333 0.00 0.00 0.00 2.17
1794 1884 7.541122 AAAAGCGTTTAGATTAGATCTCCAC 57.459 36.000 0.00 0.00 40.76 4.02
1795 1885 6.472686 AAGCGTTTAGATTAGATCTCCACT 57.527 37.500 0.00 0.00 40.76 4.00
1796 1886 6.472686 AGCGTTTAGATTAGATCTCCACTT 57.527 37.500 0.00 0.00 40.76 3.16
1797 1887 6.879400 AGCGTTTAGATTAGATCTCCACTTT 58.121 36.000 0.00 0.00 40.76 2.66
1798 1888 8.008513 AGCGTTTAGATTAGATCTCCACTTTA 57.991 34.615 0.00 0.00 40.76 1.85
1799 1889 8.475639 AGCGTTTAGATTAGATCTCCACTTTAA 58.524 33.333 0.00 0.00 40.76 1.52
1800 1890 9.262358 GCGTTTAGATTAGATCTCCACTTTAAT 57.738 33.333 0.00 0.00 40.76 1.40
1810 1900 8.879342 AGATCTCCACTTTAATGATCTAAACG 57.121 34.615 0.00 0.00 41.12 3.60
1811 1901 6.903883 TCTCCACTTTAATGATCTAAACGC 57.096 37.500 0.00 0.00 0.00 4.84
1812 1902 6.640518 TCTCCACTTTAATGATCTAAACGCT 58.359 36.000 0.00 0.00 0.00 5.07
1813 1903 6.757010 TCTCCACTTTAATGATCTAAACGCTC 59.243 38.462 0.00 0.00 0.00 5.03
1814 1904 6.640518 TCCACTTTAATGATCTAAACGCTCT 58.359 36.000 0.00 0.00 0.00 4.09
1815 1905 7.103641 TCCACTTTAATGATCTAAACGCTCTT 58.896 34.615 0.00 0.00 0.00 2.85
1816 1906 8.255206 TCCACTTTAATGATCTAAACGCTCTTA 58.745 33.333 0.00 0.00 0.00 2.10
1817 1907 9.046296 CCACTTTAATGATCTAAACGCTCTTAT 57.954 33.333 0.00 0.00 0.00 1.73
1829 1919 9.241317 TCTAAACGCTCTTATATTTCTTAACGG 57.759 33.333 0.00 0.00 0.00 4.44
1830 1920 9.241317 CTAAACGCTCTTATATTTCTTAACGGA 57.759 33.333 0.00 0.00 0.00 4.69
1831 1921 7.695869 AACGCTCTTATATTTCTTAACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
1832 1922 6.214399 ACGCTCTTATATTTCTTAACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
1833 1923 5.634020 CGCTCTTATATTTCTTAACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
1834 1924 6.516194 CGCTCTTATATTTCTTAACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
1835 1925 7.215085 GCTCTTATATTTCTTAACGGAGGGAA 58.785 38.462 0.00 0.00 0.00 3.97
1836 1926 7.878644 GCTCTTATATTTCTTAACGGAGGGAAT 59.121 37.037 0.00 0.00 0.00 3.01
1839 1929 9.991906 CTTATATTTCTTAACGGAGGGAATACA 57.008 33.333 0.00 0.00 0.00 2.29
1842 1932 6.995511 TTTCTTAACGGAGGGAATACAATG 57.004 37.500 0.00 0.00 0.00 2.82
1843 1933 4.448210 TCTTAACGGAGGGAATACAATGC 58.552 43.478 0.00 0.00 0.00 3.56
1844 1934 4.163458 TCTTAACGGAGGGAATACAATGCT 59.837 41.667 0.00 0.00 0.00 3.79
1845 1935 2.332063 ACGGAGGGAATACAATGCTG 57.668 50.000 0.00 0.00 0.00 4.41
1846 1936 1.134098 ACGGAGGGAATACAATGCTGG 60.134 52.381 0.00 0.00 0.00 4.85
1847 1937 1.815408 CGGAGGGAATACAATGCTGGG 60.815 57.143 0.00 0.00 0.00 4.45
1848 1938 1.215423 GGAGGGAATACAATGCTGGGT 59.785 52.381 0.00 0.00 0.00 4.51
1849 1939 2.358195 GGAGGGAATACAATGCTGGGTT 60.358 50.000 0.00 0.00 0.00 4.11
1850 1940 2.689983 GAGGGAATACAATGCTGGGTTG 59.310 50.000 0.00 0.00 0.00 3.77
1851 1941 2.311542 AGGGAATACAATGCTGGGTTGA 59.688 45.455 0.00 0.00 0.00 3.18
1852 1942 3.052642 AGGGAATACAATGCTGGGTTGAT 60.053 43.478 0.00 0.00 0.00 2.57
1853 1943 3.068590 GGGAATACAATGCTGGGTTGATG 59.931 47.826 0.00 0.00 0.00 3.07
1854 1944 3.701040 GGAATACAATGCTGGGTTGATGT 59.299 43.478 0.00 0.00 0.00 3.06
1855 1945 4.440525 GGAATACAATGCTGGGTTGATGTG 60.441 45.833 0.00 0.00 0.00 3.21
1856 1946 1.999648 ACAATGCTGGGTTGATGTGT 58.000 45.000 0.00 0.00 0.00 3.72
1857 1947 2.318908 ACAATGCTGGGTTGATGTGTT 58.681 42.857 0.00 0.00 0.00 3.32
1858 1948 2.699846 ACAATGCTGGGTTGATGTGTTT 59.300 40.909 0.00 0.00 0.00 2.83
1859 1949 3.243839 ACAATGCTGGGTTGATGTGTTTC 60.244 43.478 0.00 0.00 0.00 2.78
1860 1950 2.363306 TGCTGGGTTGATGTGTTTCT 57.637 45.000 0.00 0.00 0.00 2.52
1861 1951 3.500448 TGCTGGGTTGATGTGTTTCTA 57.500 42.857 0.00 0.00 0.00 2.10
1862 1952 3.411446 TGCTGGGTTGATGTGTTTCTAG 58.589 45.455 0.00 0.00 0.00 2.43
1863 1953 2.162408 GCTGGGTTGATGTGTTTCTAGC 59.838 50.000 0.00 0.00 0.00 3.42
1864 1954 3.679389 CTGGGTTGATGTGTTTCTAGCT 58.321 45.455 0.00 0.00 0.00 3.32
1865 1955 3.411446 TGGGTTGATGTGTTTCTAGCTG 58.589 45.455 0.00 0.00 0.00 4.24
1866 1956 2.749621 GGGTTGATGTGTTTCTAGCTGG 59.250 50.000 0.00 0.00 0.00 4.85
1867 1957 3.412386 GGTTGATGTGTTTCTAGCTGGT 58.588 45.455 0.00 0.00 0.00 4.00
1868 1958 3.189287 GGTTGATGTGTTTCTAGCTGGTG 59.811 47.826 0.00 0.00 0.00 4.17
1869 1959 3.769739 TGATGTGTTTCTAGCTGGTGT 57.230 42.857 0.00 0.00 0.00 4.16
1870 1960 3.402110 TGATGTGTTTCTAGCTGGTGTG 58.598 45.455 0.00 0.00 0.00 3.82
1871 1961 3.181455 TGATGTGTTTCTAGCTGGTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
1872 1962 3.275617 TGTGTTTCTAGCTGGTGTGTT 57.724 42.857 0.00 0.00 0.00 3.32
1873 1963 3.202906 TGTGTTTCTAGCTGGTGTGTTC 58.797 45.455 0.00 0.00 0.00 3.18
1874 1964 3.202906 GTGTTTCTAGCTGGTGTGTTCA 58.797 45.455 0.00 0.00 0.00 3.18
1879 1969 5.738619 TTCTAGCTGGTGTGTTCAATCTA 57.261 39.130 0.00 0.00 0.00 1.98
1913 2003 4.755411 TGCTGTCGGTTATTTTCTCTAGG 58.245 43.478 0.00 0.00 0.00 3.02
1939 2029 0.756442 ACCACATTGCAAGGCACACT 60.756 50.000 11.69 0.00 38.71 3.55
1953 2043 1.869754 GCACACTGCGGATATCACGAT 60.870 52.381 15.11 0.00 31.71 3.73
1955 2045 2.866156 CACACTGCGGATATCACGATTT 59.134 45.455 15.11 0.00 0.00 2.17
1957 2047 2.221749 CACTGCGGATATCACGATTTGG 59.778 50.000 15.11 4.87 0.00 3.28
1962 2052 3.546020 GCGGATATCACGATTTGGTTGTG 60.546 47.826 15.11 0.00 42.62 3.33
1970 2060 0.808755 GATTTGGTTGTGGCTACCGG 59.191 55.000 0.00 0.00 38.55 5.28
1971 2061 1.248101 ATTTGGTTGTGGCTACCGGC 61.248 55.000 0.00 0.00 38.55 6.13
1972 2062 4.690719 TGGTTGTGGCTACCGGCG 62.691 66.667 0.00 0.00 42.94 6.46
1991 2081 0.323957 GTTCCTACGCCCAACCTTCT 59.676 55.000 0.00 0.00 0.00 2.85
2005 2095 4.142403 CCAACCTTCTTACGACGGTACATA 60.142 45.833 0.00 0.00 40.58 2.29
2006 2096 4.622701 ACCTTCTTACGACGGTACATAC 57.377 45.455 0.00 0.00 39.76 2.39
2007 2097 3.378427 ACCTTCTTACGACGGTACATACC 59.622 47.826 0.00 0.00 39.76 2.73
2008 2098 3.378112 CCTTCTTACGACGGTACATACCA 59.622 47.826 8.76 0.00 46.80 3.25
2010 2100 5.239306 CCTTCTTACGACGGTACATACCATA 59.761 44.000 8.76 0.00 46.80 2.74
2011 2101 6.072286 CCTTCTTACGACGGTACATACCATAT 60.072 42.308 8.76 0.00 46.80 1.78
2015 2128 9.665719 TCTTACGACGGTACATACCATATAATA 57.334 33.333 8.76 0.00 46.80 0.98
2025 2138 7.900782 ACATACCATATAATAACCGCTTCAC 57.099 36.000 0.00 0.00 0.00 3.18
2031 2144 7.552687 ACCATATAATAACCGCTTCACCATATG 59.447 37.037 0.00 0.00 0.00 1.78
2032 2145 5.880054 ATAATAACCGCTTCACCATATGC 57.120 39.130 0.00 0.00 0.00 3.14
2036 2149 1.949525 ACCGCTTCACCATATGCATTC 59.050 47.619 3.54 0.00 0.00 2.67
2039 2152 2.287188 CGCTTCACCATATGCATTCCAC 60.287 50.000 3.54 0.00 0.00 4.02
2040 2153 2.689471 GCTTCACCATATGCATTCCACA 59.311 45.455 3.54 0.00 0.00 4.17
2043 2156 5.009911 GCTTCACCATATGCATTCCACATTA 59.990 40.000 3.54 0.00 0.00 1.90
2045 2158 7.600231 TTCACCATATGCATTCCACATTAAT 57.400 32.000 3.54 0.00 0.00 1.40
2047 2160 7.435305 TCACCATATGCATTCCACATTAATTG 58.565 34.615 3.54 0.00 0.00 2.32
2150 2312 2.701107 GAGGTAGTCTCTTTGTTGCCC 58.299 52.381 0.00 0.00 39.38 5.36
2157 2319 2.893489 GTCTCTTTGTTGCCCATCCTTT 59.107 45.455 0.00 0.00 0.00 3.11
2159 2321 3.966665 TCTCTTTGTTGCCCATCCTTTTT 59.033 39.130 0.00 0.00 0.00 1.94
2166 2328 2.700354 TGCCCATCCTTTTTCCCTTTT 58.300 42.857 0.00 0.00 0.00 2.27
2167 2329 2.371510 TGCCCATCCTTTTTCCCTTTTG 59.628 45.455 0.00 0.00 0.00 2.44
2227 2389 4.451096 AGCTTTGGAGTGTGTTATGTTACG 59.549 41.667 0.00 0.00 0.00 3.18
2229 2391 5.389516 GCTTTGGAGTGTGTTATGTTACGAG 60.390 44.000 0.00 0.00 0.00 4.18
2250 2412 5.405571 CGAGAACATACTATATGTTGCCACC 59.594 44.000 16.80 4.64 41.76 4.61
2251 2413 5.297547 AGAACATACTATATGTTGCCACCG 58.702 41.667 16.80 0.00 41.76 4.94
2262 2424 1.816863 TTGCCACCGACACCTCTCTC 61.817 60.000 0.00 0.00 0.00 3.20
2274 2436 5.533154 CGACACCTCTCTCCTCATTAACTAT 59.467 44.000 0.00 0.00 0.00 2.12
2276 2438 7.416890 CGACACCTCTCTCCTCATTAACTATTT 60.417 40.741 0.00 0.00 0.00 1.40
2309 2471 5.239525 AGCAAACTTGTCTAGGAATGTGTTC 59.760 40.000 0.00 0.00 0.00 3.18
2325 2489 8.175716 GGAATGTGTTCTTACTTGCTATGTTAC 58.824 37.037 0.00 0.00 34.68 2.50
2335 2499 6.412362 ACTTGCTATGTTACTCCCTCTATG 57.588 41.667 0.00 0.00 0.00 2.23
2340 2504 5.279056 GCTATGTTACTCCCTCTATGACCAC 60.279 48.000 0.00 0.00 0.00 4.16
2343 2507 0.031010 ACTCCCTCTATGACCACCCC 60.031 60.000 0.00 0.00 0.00 4.95
2348 2512 0.178068 CTCTATGACCACCCCAACCG 59.822 60.000 0.00 0.00 0.00 4.44
2349 2513 0.252330 TCTATGACCACCCCAACCGA 60.252 55.000 0.00 0.00 0.00 4.69
2373 2537 0.394352 ATCACCCGATGGAACTTGGC 60.394 55.000 0.00 0.00 34.81 4.52
2394 2590 4.215613 GGCGAGTTCAGTTAAATTCCAGTT 59.784 41.667 0.00 0.00 0.00 3.16
2467 2663 2.028561 AATGTTCAATGTGCCCCCTT 57.971 45.000 0.00 0.00 0.00 3.95
2468 2664 1.560505 ATGTTCAATGTGCCCCCTTC 58.439 50.000 0.00 0.00 0.00 3.46
2471 2667 0.893270 TTCAATGTGCCCCCTTCGTG 60.893 55.000 0.00 0.00 0.00 4.35
2474 2670 2.484287 AATGTGCCCCCTTCGTGGAG 62.484 60.000 0.00 0.00 38.35 3.86
2484 2680 1.071699 CCTTCGTGGAGACCCTTTTCA 59.928 52.381 0.00 0.00 38.35 2.69
2529 2725 6.943146 TGTTTAGTATGAAACCCATGCAAGTA 59.057 34.615 0.00 0.00 39.89 2.24
2543 2739 8.976353 ACCCATGCAAGTATTTCATGTTAATTA 58.024 29.630 0.00 0.00 36.70 1.40
2594 2790 8.721133 TGTATGTAAATAGGGCTGAGATAGAA 57.279 34.615 0.00 0.00 0.00 2.10
2603 2799 2.352617 GGCTGAGATAGAAGCAGATCGG 60.353 54.545 0.00 0.00 41.36 4.18
2738 2934 2.352561 TTACTCATCCCCACCCTGAA 57.647 50.000 0.00 0.00 0.00 3.02
2860 3056 7.446106 TCAGTAACCCAACCATGTAAGATAT 57.554 36.000 0.00 0.00 0.00 1.63
2861 3057 8.555896 TCAGTAACCCAACCATGTAAGATATA 57.444 34.615 0.00 0.00 0.00 0.86
2862 3058 8.426489 TCAGTAACCCAACCATGTAAGATATAC 58.574 37.037 0.00 0.00 0.00 1.47
2863 3059 8.429641 CAGTAACCCAACCATGTAAGATATACT 58.570 37.037 0.00 0.00 0.00 2.12
2864 3060 8.648693 AGTAACCCAACCATGTAAGATATACTC 58.351 37.037 0.00 0.00 0.00 2.59
2865 3061 6.435292 ACCCAACCATGTAAGATATACTCC 57.565 41.667 0.00 0.00 0.00 3.85
2866 3062 5.309806 ACCCAACCATGTAAGATATACTCCC 59.690 44.000 0.00 0.00 0.00 4.30
2867 3063 5.548056 CCCAACCATGTAAGATATACTCCCT 59.452 44.000 0.00 0.00 0.00 4.20
2868 3064 6.295916 CCCAACCATGTAAGATATACTCCCTC 60.296 46.154 0.00 0.00 0.00 4.30
2869 3065 6.295916 CCAACCATGTAAGATATACTCCCTCC 60.296 46.154 0.00 0.00 0.00 4.30
2870 3066 5.017490 ACCATGTAAGATATACTCCCTCCG 58.983 45.833 0.00 0.00 0.00 4.63
2871 3067 5.017490 CCATGTAAGATATACTCCCTCCGT 58.983 45.833 0.00 0.00 0.00 4.69
2872 3068 5.125739 CCATGTAAGATATACTCCCTCCGTC 59.874 48.000 0.00 0.00 0.00 4.79
2873 3069 4.660168 TGTAAGATATACTCCCTCCGTCC 58.340 47.826 0.00 0.00 0.00 4.79
2874 3070 2.903375 AGATATACTCCCTCCGTCCC 57.097 55.000 0.00 0.00 0.00 4.46
2875 3071 2.071372 AGATATACTCCCTCCGTCCCA 58.929 52.381 0.00 0.00 0.00 4.37
2876 3072 2.449730 AGATATACTCCCTCCGTCCCAA 59.550 50.000 0.00 0.00 0.00 4.12
2877 3073 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2878 3074 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2879 3075 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2880 3076 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2881 3077 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2882 3078 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2883 3079 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2884 3080 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2885 3081 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2886 3082 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2887 3083 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2888 3084 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2889 3085 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2890 3086 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2891 3087 4.700213 CCGTCCCAAAATAAGTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
2892 3088 5.183140 CCGTCCCAAAATAAGTGTCTCAATT 59.817 40.000 0.00 0.00 0.00 2.32
2893 3089 6.294508 CCGTCCCAAAATAAGTGTCTCAATTT 60.295 38.462 0.00 0.00 0.00 1.82
2894 3090 6.582295 CGTCCCAAAATAAGTGTCTCAATTTG 59.418 38.462 0.00 0.00 0.00 2.32
2895 3091 7.521423 CGTCCCAAAATAAGTGTCTCAATTTGA 60.521 37.037 0.00 0.00 0.00 2.69
2896 3092 7.809806 GTCCCAAAATAAGTGTCTCAATTTGAG 59.190 37.037 18.49 18.49 45.59 3.02
2911 3107 7.831691 TCAATTTGAGACACTTATTTTGGGA 57.168 32.000 0.00 0.00 0.00 4.37
2912 3108 7.657336 TCAATTTGAGACACTTATTTTGGGAC 58.343 34.615 0.00 0.00 0.00 4.46
2913 3109 7.286546 TCAATTTGAGACACTTATTTTGGGACA 59.713 33.333 0.00 0.00 0.00 4.02
2914 3110 6.633500 TTTGAGACACTTATTTTGGGACAG 57.367 37.500 0.00 0.00 42.39 3.51
2915 3111 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
2916 3112 5.551233 TGAGACACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
2917 3113 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
2918 3114 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
2919 3115 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
2920 3116 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
2950 3146 2.971330 TGGGTGAATTCCATGCAAAGTT 59.029 40.909 2.27 0.00 0.00 2.66
2959 3155 2.106166 TCCATGCAAAGTTGGGCAAATT 59.894 40.909 4.27 0.00 44.20 1.82
2972 3168 9.566432 AAGTTGGGCAAATTGTATTTTAATTCA 57.434 25.926 0.00 0.00 0.00 2.57
3023 3219 9.896645 ACATCTGATACTTAATATATGGCCTTG 57.103 33.333 3.32 0.00 0.00 3.61
3034 3230 1.414061 ATGGCCTTGGATCTCTCCGG 61.414 60.000 3.32 0.00 45.37 5.14
3097 3293 7.911205 CAGTGAAGATTAACTCTCCTAGTAACG 59.089 40.741 0.00 0.00 37.50 3.18
3109 3305 8.317679 ACTCTCCTAGTAACGAAGACTAAACTA 58.682 37.037 0.00 0.00 36.36 2.24
3177 3373 6.006449 AGGATTGTAGAGAATGTTTGCAACT 58.994 36.000 0.00 0.00 0.00 3.16
3178 3374 6.150140 AGGATTGTAGAGAATGTTTGCAACTC 59.850 38.462 0.00 1.80 34.64 3.01
3179 3375 4.990543 TGTAGAGAATGTTTGCAACTCG 57.009 40.909 0.00 0.00 37.27 4.18
3180 3376 2.977405 AGAGAATGTTTGCAACTCGC 57.023 45.000 0.00 0.00 42.89 5.03
3181 3377 1.195448 AGAGAATGTTTGCAACTCGCG 59.805 47.619 0.00 0.00 46.97 5.87
3182 3378 0.385974 AGAATGTTTGCAACTCGCGC 60.386 50.000 0.00 0.00 46.97 6.86
3183 3379 0.385974 GAATGTTTGCAACTCGCGCT 60.386 50.000 5.56 0.00 46.97 5.92
3224 3420 5.409826 CCTATTATTTTCGAGATGGACTGCC 59.590 44.000 0.00 0.00 0.00 4.85
3227 3423 0.250234 TTTCGAGATGGACTGCCCTG 59.750 55.000 0.00 0.00 35.38 4.45
3228 3424 0.614697 TTCGAGATGGACTGCCCTGA 60.615 55.000 0.00 0.00 35.38 3.86
3229 3425 1.039785 TCGAGATGGACTGCCCTGAG 61.040 60.000 0.00 0.00 35.38 3.35
3230 3426 1.828768 GAGATGGACTGCCCTGAGG 59.171 63.158 0.00 0.00 35.38 3.86
3242 3438 1.924731 CCCTGAGGCGGTATCTATGA 58.075 55.000 0.00 0.00 0.00 2.15
3243 3439 2.461695 CCCTGAGGCGGTATCTATGAT 58.538 52.381 0.00 0.00 0.00 2.45
3244 3440 2.428890 CCCTGAGGCGGTATCTATGATC 59.571 54.545 0.00 0.00 0.00 2.92
3245 3441 3.092301 CCTGAGGCGGTATCTATGATCA 58.908 50.000 0.00 0.00 0.00 2.92
3246 3442 3.511540 CCTGAGGCGGTATCTATGATCAA 59.488 47.826 0.00 0.00 0.00 2.57
3247 3443 4.161189 CCTGAGGCGGTATCTATGATCAAT 59.839 45.833 0.00 0.00 0.00 2.57
3248 3444 5.337894 CCTGAGGCGGTATCTATGATCAATT 60.338 44.000 0.00 0.00 0.00 2.32
3249 3445 6.114187 TGAGGCGGTATCTATGATCAATTT 57.886 37.500 0.00 0.00 0.00 1.82
3250 3446 7.239763 TGAGGCGGTATCTATGATCAATTTA 57.760 36.000 0.00 0.00 0.00 1.40
3251 3447 7.676004 TGAGGCGGTATCTATGATCAATTTAA 58.324 34.615 0.00 0.00 0.00 1.52
3252 3448 8.154203 TGAGGCGGTATCTATGATCAATTTAAA 58.846 33.333 0.00 0.00 0.00 1.52
3253 3449 8.553459 AGGCGGTATCTATGATCAATTTAAAG 57.447 34.615 0.00 0.00 0.00 1.85
3254 3450 7.607991 AGGCGGTATCTATGATCAATTTAAAGG 59.392 37.037 0.00 0.00 0.00 3.11
3255 3451 7.244192 GCGGTATCTATGATCAATTTAAAGGC 58.756 38.462 0.00 0.00 0.00 4.35
3256 3452 7.119846 GCGGTATCTATGATCAATTTAAAGGCT 59.880 37.037 0.00 0.00 0.00 4.58
3257 3453 8.446273 CGGTATCTATGATCAATTTAAAGGCTG 58.554 37.037 0.00 0.00 0.00 4.85
3258 3454 8.734386 GGTATCTATGATCAATTTAAAGGCTGG 58.266 37.037 0.00 0.00 0.00 4.85
3259 3455 9.507329 GTATCTATGATCAATTTAAAGGCTGGA 57.493 33.333 0.00 0.00 0.00 3.86
3260 3456 8.632906 ATCTATGATCAATTTAAAGGCTGGAG 57.367 34.615 0.00 0.00 0.00 3.86
3261 3457 7.805163 TCTATGATCAATTTAAAGGCTGGAGA 58.195 34.615 0.00 0.00 0.00 3.71
3262 3458 6.705863 ATGATCAATTTAAAGGCTGGAGAC 57.294 37.500 0.00 0.00 0.00 3.36
3263 3459 4.949856 TGATCAATTTAAAGGCTGGAGACC 59.050 41.667 0.00 0.00 0.00 3.85
3264 3460 4.380843 TCAATTTAAAGGCTGGAGACCA 57.619 40.909 0.00 0.00 0.00 4.02
3265 3461 4.735369 TCAATTTAAAGGCTGGAGACCAA 58.265 39.130 0.00 0.00 30.80 3.67
3266 3462 5.332743 TCAATTTAAAGGCTGGAGACCAAT 58.667 37.500 0.00 0.00 30.80 3.16
3267 3463 5.418840 TCAATTTAAAGGCTGGAGACCAATC 59.581 40.000 0.00 0.00 30.80 2.67
3268 3464 3.366052 TTAAAGGCTGGAGACCAATCC 57.634 47.619 0.00 0.00 40.03 3.01
3281 3477 8.783660 TGGAGACCAATCCAGGTATATATATC 57.216 38.462 0.00 0.00 44.56 1.63
3282 3478 7.789831 TGGAGACCAATCCAGGTATATATATCC 59.210 40.741 0.00 1.27 44.56 2.59
3326 3522 7.062749 TGGATGTTTGGAGTATAGTGGTATC 57.937 40.000 0.00 0.00 0.00 2.24
3329 3525 6.726490 TGTTTGGAGTATAGTGGTATCCTC 57.274 41.667 0.00 0.00 0.00 3.71
3330 3526 5.301045 TGTTTGGAGTATAGTGGTATCCTCG 59.699 44.000 0.00 0.00 0.00 4.63
3338 3534 1.074850 TGGTATCCTCGGCCCATCA 60.075 57.895 0.00 0.00 0.00 3.07
3365 3561 1.153549 GTCCTAGACTTGCCGCTGG 60.154 63.158 0.00 0.00 0.00 4.85
3415 3611 0.948623 CTTCCGGCGATGTGTGTTCA 60.949 55.000 9.30 0.00 0.00 3.18
3419 3615 1.868997 GGCGATGTGTGTTCAGTGG 59.131 57.895 0.00 0.00 0.00 4.00
3453 3649 6.825284 TTTCGTCGACTACAAATGTGTTTA 57.175 33.333 14.70 0.00 39.30 2.01
3457 3653 5.119588 CGTCGACTACAAATGTGTTTATGGT 59.880 40.000 14.70 0.00 39.30 3.55
3489 3685 2.759191 TCTCAAGATGATATGTGCCGC 58.241 47.619 0.00 0.00 0.00 6.53
3501 3697 2.283173 TGCCGCCTCAGTCTCTCA 60.283 61.111 0.00 0.00 0.00 3.27
3504 3700 0.739112 GCCGCCTCAGTCTCTCAAAG 60.739 60.000 0.00 0.00 0.00 2.77
3512 3708 2.902486 TCAGTCTCTCAAAGGTGCTCAT 59.098 45.455 0.00 0.00 0.00 2.90
3520 3716 4.590647 TCTCAAAGGTGCTCATAGGATAGG 59.409 45.833 0.00 0.00 0.00 2.57
3521 3717 3.648067 TCAAAGGTGCTCATAGGATAGGG 59.352 47.826 0.00 0.00 0.00 3.53
3529 3725 3.154710 CTCATAGGATAGGGTGTGCGTA 58.845 50.000 0.00 0.00 0.00 4.42
3531 3727 3.509967 TCATAGGATAGGGTGTGCGTATG 59.490 47.826 0.00 0.00 33.04 2.39
3533 3729 1.412710 AGGATAGGGTGTGCGTATGTG 59.587 52.381 0.00 0.00 0.00 3.21
3536 3732 2.373540 TAGGGTGTGCGTATGTGTTC 57.626 50.000 0.00 0.00 0.00 3.18
3543 3739 1.597663 GTGCGTATGTGTTCATAGGGC 59.402 52.381 9.04 6.98 40.56 5.19
3605 3801 5.391312 AAAAGGAAGATTTTGATGTCCGG 57.609 39.130 0.00 0.00 31.30 5.14
3639 3835 7.762382 AGATTGTGCTTACCTTAATTAGTTGC 58.238 34.615 0.00 0.00 0.00 4.17
3643 3839 4.331717 TGCTTACCTTAATTAGTTGCGCTC 59.668 41.667 9.73 1.40 0.00 5.03
3709 3905 2.423185 CTGCAAACTGAAGTGTGGTTCA 59.577 45.455 2.88 0.00 33.89 3.18
3724 3920 1.070786 TTCAGCTCGAACACACCCC 59.929 57.895 0.00 0.00 0.00 4.95
3725 3921 2.358737 CAGCTCGAACACACCCCC 60.359 66.667 0.00 0.00 0.00 5.40
3754 4516 4.522975 GGGGCGGGGCAGCTTAAT 62.523 66.667 4.29 0.00 37.29 1.40
3757 4519 1.437573 GGCGGGGCAGCTTAATTTC 59.562 57.895 4.29 0.00 37.29 2.17
3759 4521 1.675552 GCGGGGCAGCTTAATTTCTA 58.324 50.000 0.00 0.00 0.00 2.10
3760 4522 1.604278 GCGGGGCAGCTTAATTTCTAG 59.396 52.381 0.00 0.00 0.00 2.43
3762 4524 2.872858 CGGGGCAGCTTAATTTCTAGTC 59.127 50.000 0.00 0.00 0.00 2.59
3763 4525 3.681594 CGGGGCAGCTTAATTTCTAGTCA 60.682 47.826 0.00 0.00 0.00 3.41
3764 4526 3.628032 GGGGCAGCTTAATTTCTAGTCAC 59.372 47.826 0.00 0.00 0.00 3.67
3765 4527 4.518249 GGGCAGCTTAATTTCTAGTCACT 58.482 43.478 0.00 0.00 0.00 3.41
3766 4528 4.944317 GGGCAGCTTAATTTCTAGTCACTT 59.056 41.667 0.00 0.00 0.00 3.16
3767 4529 6.113411 GGGCAGCTTAATTTCTAGTCACTTA 58.887 40.000 0.00 0.00 0.00 2.24
3772 5673 9.606631 CAGCTTAATTTCTAGTCACTTATTCCT 57.393 33.333 0.00 0.00 0.00 3.36
3773 5674 9.825109 AGCTTAATTTCTAGTCACTTATTCCTC 57.175 33.333 0.00 0.00 0.00 3.71
3782 5683 4.041198 AGTCACTTATTCCTCCGGAAACAA 59.959 41.667 5.23 0.00 45.41 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.938322 TCAGGTTTCATAATTTCTTCGTGC 58.062 37.500 0.00 0.00 0.00 5.34
30 31 7.359595 TGTTCAGGTTTCATAATTTCTTCGTG 58.640 34.615 0.00 0.00 0.00 4.35
31 32 7.504924 TGTTCAGGTTTCATAATTTCTTCGT 57.495 32.000 0.00 0.00 0.00 3.85
75 76 5.696724 ACTCTTGACCTTTTTAGATGTCACG 59.303 40.000 0.00 0.00 37.46 4.35
158 160 6.843208 TCATGAACGTTTTTGAAGTGTTACA 58.157 32.000 0.46 0.00 0.00 2.41
340 342 9.218440 ACATTTCTGAAAACAACAAGAACATTT 57.782 25.926 6.95 0.00 0.00 2.32
341 343 8.776376 ACATTTCTGAAAACAACAAGAACATT 57.224 26.923 6.95 0.00 0.00 2.71
342 344 8.253113 AGACATTTCTGAAAACAACAAGAACAT 58.747 29.630 6.95 0.00 0.00 2.71
343 345 7.601856 AGACATTTCTGAAAACAACAAGAACA 58.398 30.769 6.95 0.00 0.00 3.18
344 346 7.970614 AGAGACATTTCTGAAAACAACAAGAAC 59.029 33.333 6.95 0.00 29.47 3.01
345 347 8.055279 AGAGACATTTCTGAAAACAACAAGAA 57.945 30.769 6.95 0.00 29.47 2.52
346 348 7.630242 AGAGACATTTCTGAAAACAACAAGA 57.370 32.000 6.95 0.00 29.47 3.02
347 349 7.756722 ACAAGAGACATTTCTGAAAACAACAAG 59.243 33.333 6.95 0.00 29.47 3.16
348 350 7.601856 ACAAGAGACATTTCTGAAAACAACAA 58.398 30.769 6.95 0.00 29.47 2.83
349 351 7.094420 TGACAAGAGACATTTCTGAAAACAACA 60.094 33.333 6.95 0.00 29.47 3.33
350 352 7.250569 TGACAAGAGACATTTCTGAAAACAAC 58.749 34.615 6.95 0.30 29.47 3.32
351 353 7.389803 TGACAAGAGACATTTCTGAAAACAA 57.610 32.000 6.95 0.00 29.47 2.83
352 354 7.572523 ATGACAAGAGACATTTCTGAAAACA 57.427 32.000 6.95 0.00 29.47 2.83
353 355 9.950680 TTAATGACAAGAGACATTTCTGAAAAC 57.049 29.630 6.95 2.61 39.95 2.43
490 492 5.047872 AGCACACACATGAAGCATATTTTGA 60.048 36.000 0.00 0.00 34.34 2.69
500 502 5.618056 ACATTTCTAGCACACACATGAAG 57.382 39.130 0.00 0.00 0.00 3.02
561 563 7.601856 TCTTTGCTGATTTTAATCCGTTTCAT 58.398 30.769 0.32 0.00 34.50 2.57
567 569 6.155827 TGGTTTCTTTGCTGATTTTAATCCG 58.844 36.000 0.32 0.00 34.50 4.18
568 570 7.961325 TTGGTTTCTTTGCTGATTTTAATCC 57.039 32.000 0.32 0.00 34.50 3.01
614 616 7.789273 TGTACTCTCGGTTTTCATTTGTTTA 57.211 32.000 0.00 0.00 0.00 2.01
676 685 8.738106 TCTTTTGGTTTTCTTTTTACCTTCGTA 58.262 29.630 0.00 0.00 33.05 3.43
687 696 6.774673 TCAGGGTTTTCTTTTGGTTTTCTTT 58.225 32.000 0.00 0.00 0.00 2.52
688 697 6.367374 TCAGGGTTTTCTTTTGGTTTTCTT 57.633 33.333 0.00 0.00 0.00 2.52
689 698 6.156083 TCATCAGGGTTTTCTTTTGGTTTTCT 59.844 34.615 0.00 0.00 0.00 2.52
690 699 6.345298 TCATCAGGGTTTTCTTTTGGTTTTC 58.655 36.000 0.00 0.00 0.00 2.29
691 700 6.306643 TCATCAGGGTTTTCTTTTGGTTTT 57.693 33.333 0.00 0.00 0.00 2.43
692 701 5.948742 TCATCAGGGTTTTCTTTTGGTTT 57.051 34.783 0.00 0.00 0.00 3.27
693 702 5.948742 TTCATCAGGGTTTTCTTTTGGTT 57.051 34.783 0.00 0.00 0.00 3.67
694 703 5.948742 TTTCATCAGGGTTTTCTTTTGGT 57.051 34.783 0.00 0.00 0.00 3.67
812 823 1.087501 TATCCGAGAGCGATCGATGG 58.912 55.000 21.57 10.85 45.56 3.51
813 824 1.527995 CGTATCCGAGAGCGATCGATG 60.528 57.143 21.57 0.00 45.56 3.84
814 825 0.722282 CGTATCCGAGAGCGATCGAT 59.278 55.000 21.57 14.21 45.56 3.59
985 1026 1.850441 GTTCATGGTCGGTCGATAACG 59.150 52.381 0.00 0.00 41.26 3.18
1064 1108 4.254709 ACCAGTCAAGCAGGCGCA 62.255 61.111 10.83 0.00 42.27 6.09
1631 1716 2.126228 CGCCGTCGGTCTTAAGCA 60.126 61.111 13.94 0.00 0.00 3.91
1700 1790 6.761242 GCCAATAATCCAAATGAACCTAAACC 59.239 38.462 0.00 0.00 0.00 3.27
1704 1794 6.490040 GCTAGCCAATAATCCAAATGAACCTA 59.510 38.462 2.29 0.00 0.00 3.08
1709 1799 7.233632 ACATAGCTAGCCAATAATCCAAATGA 58.766 34.615 12.13 0.00 0.00 2.57
1711 1801 8.386264 ACTACATAGCTAGCCAATAATCCAAAT 58.614 33.333 12.13 0.00 0.00 2.32
1712 1802 7.745717 ACTACATAGCTAGCCAATAATCCAAA 58.254 34.615 12.13 0.00 0.00 3.28
1713 1803 7.316393 ACTACATAGCTAGCCAATAATCCAA 57.684 36.000 12.13 0.00 0.00 3.53
1714 1804 6.935240 ACTACATAGCTAGCCAATAATCCA 57.065 37.500 12.13 0.00 0.00 3.41
1719 1809 9.404848 ACGATATTACTACATAGCTAGCCAATA 57.595 33.333 12.13 0.00 0.00 1.90
1720 1810 8.294954 ACGATATTACTACATAGCTAGCCAAT 57.705 34.615 12.13 2.31 0.00 3.16
1721 1811 7.698506 ACGATATTACTACATAGCTAGCCAA 57.301 36.000 12.13 0.00 0.00 4.52
1722 1812 8.045507 ACTACGATATTACTACATAGCTAGCCA 58.954 37.037 12.13 0.00 0.00 4.75
1723 1813 8.436046 ACTACGATATTACTACATAGCTAGCC 57.564 38.462 12.13 0.00 0.00 3.93
1727 1817 9.598517 GGAGTACTACGATATTACTACATAGCT 57.401 37.037 0.00 0.00 28.28 3.32
1728 1818 8.825745 GGGAGTACTACGATATTACTACATAGC 58.174 40.741 0.00 0.00 29.04 2.97
1731 1821 8.824783 AGAGGGAGTACTACGATATTACTACAT 58.175 37.037 0.00 0.00 29.04 2.29
1732 1822 8.200024 AGAGGGAGTACTACGATATTACTACA 57.800 38.462 0.00 0.00 29.04 2.74
1741 1831 9.810870 ATTTCTTTATAGAGGGAGTACTACGAT 57.189 33.333 0.00 0.00 0.00 3.73
1768 1858 9.262358 GTGGAGATCTAATCTAAACGCTTTTAT 57.738 33.333 0.00 0.00 40.38 1.40
1769 1859 8.475639 AGTGGAGATCTAATCTAAACGCTTTTA 58.524 33.333 0.00 0.00 40.38 1.52
1770 1860 7.331791 AGTGGAGATCTAATCTAAACGCTTTT 58.668 34.615 0.00 0.00 40.38 2.27
1771 1861 6.879400 AGTGGAGATCTAATCTAAACGCTTT 58.121 36.000 0.00 0.00 40.38 3.51
1772 1862 6.472686 AGTGGAGATCTAATCTAAACGCTT 57.527 37.500 0.00 0.00 40.38 4.68
1773 1863 6.472686 AAGTGGAGATCTAATCTAAACGCT 57.527 37.500 0.00 0.00 40.38 5.07
1774 1864 8.644318 TTAAAGTGGAGATCTAATCTAAACGC 57.356 34.615 0.00 0.00 40.38 4.84
1784 1874 9.967346 CGTTTAGATCATTAAAGTGGAGATCTA 57.033 33.333 0.00 0.00 42.49 1.98
1785 1875 7.439655 GCGTTTAGATCATTAAAGTGGAGATCT 59.560 37.037 0.00 0.00 45.24 2.75
1786 1876 7.439655 AGCGTTTAGATCATTAAAGTGGAGATC 59.560 37.037 0.00 0.00 36.29 2.75
1787 1877 7.275920 AGCGTTTAGATCATTAAAGTGGAGAT 58.724 34.615 0.00 0.00 0.00 2.75
1788 1878 6.640518 AGCGTTTAGATCATTAAAGTGGAGA 58.359 36.000 0.00 0.00 0.00 3.71
1789 1879 6.758886 AGAGCGTTTAGATCATTAAAGTGGAG 59.241 38.462 0.00 0.00 37.82 3.86
1790 1880 6.640518 AGAGCGTTTAGATCATTAAAGTGGA 58.359 36.000 0.00 0.00 37.82 4.02
1791 1881 6.910536 AGAGCGTTTAGATCATTAAAGTGG 57.089 37.500 0.00 0.00 37.82 4.00
1803 1893 9.241317 CCGTTAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
1804 1894 9.241317 TCCGTTAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
1805 1895 9.241317 CTCCGTTAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
1806 1896 7.224167 CCTCCGTTAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1807 1897 6.700520 CCTCCGTTAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
1808 1898 6.214399 CCTCCGTTAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
1809 1899 5.634020 CCCTCCGTTAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
1810 1900 6.756221 TCCCTCCGTTAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1813 1903 9.991906 TGTATTCCCTCCGTTAAGAAATATAAG 57.008 33.333 0.00 0.00 0.00 1.73
1816 1906 9.284968 CATTGTATTCCCTCCGTTAAGAAATAT 57.715 33.333 0.00 0.00 0.00 1.28
1817 1907 7.227910 GCATTGTATTCCCTCCGTTAAGAAATA 59.772 37.037 0.00 0.00 0.00 1.40
1818 1908 6.039382 GCATTGTATTCCCTCCGTTAAGAAAT 59.961 38.462 0.00 0.00 0.00 2.17
1819 1909 5.355910 GCATTGTATTCCCTCCGTTAAGAAA 59.644 40.000 0.00 0.00 0.00 2.52
1820 1910 4.879545 GCATTGTATTCCCTCCGTTAAGAA 59.120 41.667 0.00 0.00 0.00 2.52
1821 1911 4.163458 AGCATTGTATTCCCTCCGTTAAGA 59.837 41.667 0.00 0.00 0.00 2.10
1822 1912 4.273480 CAGCATTGTATTCCCTCCGTTAAG 59.727 45.833 0.00 0.00 0.00 1.85
1823 1913 4.196193 CAGCATTGTATTCCCTCCGTTAA 58.804 43.478 0.00 0.00 0.00 2.01
1824 1914 3.433031 CCAGCATTGTATTCCCTCCGTTA 60.433 47.826 0.00 0.00 0.00 3.18
1825 1915 2.643551 CAGCATTGTATTCCCTCCGTT 58.356 47.619 0.00 0.00 0.00 4.44
1826 1916 1.134098 CCAGCATTGTATTCCCTCCGT 60.134 52.381 0.00 0.00 0.00 4.69
1827 1917 1.597742 CCAGCATTGTATTCCCTCCG 58.402 55.000 0.00 0.00 0.00 4.63
1828 1918 1.215423 ACCCAGCATTGTATTCCCTCC 59.785 52.381 0.00 0.00 0.00 4.30
1829 1919 2.689983 CAACCCAGCATTGTATTCCCTC 59.310 50.000 0.00 0.00 0.00 4.30
1830 1920 2.311542 TCAACCCAGCATTGTATTCCCT 59.688 45.455 0.00 0.00 0.00 4.20
1831 1921 2.733956 TCAACCCAGCATTGTATTCCC 58.266 47.619 0.00 0.00 0.00 3.97
1832 1922 3.701040 ACATCAACCCAGCATTGTATTCC 59.299 43.478 0.00 0.00 0.00 3.01
1833 1923 4.158394 ACACATCAACCCAGCATTGTATTC 59.842 41.667 0.00 0.00 0.00 1.75
1834 1924 4.088634 ACACATCAACCCAGCATTGTATT 58.911 39.130 0.00 0.00 0.00 1.89
1835 1925 3.700538 ACACATCAACCCAGCATTGTAT 58.299 40.909 0.00 0.00 0.00 2.29
1836 1926 3.153369 ACACATCAACCCAGCATTGTA 57.847 42.857 0.00 0.00 0.00 2.41
1837 1927 1.999648 ACACATCAACCCAGCATTGT 58.000 45.000 0.00 0.00 0.00 2.71
1838 1928 3.006110 AGAAACACATCAACCCAGCATTG 59.994 43.478 0.00 0.00 0.00 2.82
1839 1929 3.233507 AGAAACACATCAACCCAGCATT 58.766 40.909 0.00 0.00 0.00 3.56
1840 1930 2.880443 AGAAACACATCAACCCAGCAT 58.120 42.857 0.00 0.00 0.00 3.79
1841 1931 2.363306 AGAAACACATCAACCCAGCA 57.637 45.000 0.00 0.00 0.00 4.41
1842 1932 2.162408 GCTAGAAACACATCAACCCAGC 59.838 50.000 0.00 0.00 0.00 4.85
1843 1933 3.438087 CAGCTAGAAACACATCAACCCAG 59.562 47.826 0.00 0.00 0.00 4.45
1844 1934 3.411446 CAGCTAGAAACACATCAACCCA 58.589 45.455 0.00 0.00 0.00 4.51
1845 1935 2.749621 CCAGCTAGAAACACATCAACCC 59.250 50.000 0.00 0.00 0.00 4.11
1846 1936 3.189287 CACCAGCTAGAAACACATCAACC 59.811 47.826 0.00 0.00 0.00 3.77
1847 1937 3.815401 ACACCAGCTAGAAACACATCAAC 59.185 43.478 0.00 0.00 0.00 3.18
1848 1938 3.814842 CACACCAGCTAGAAACACATCAA 59.185 43.478 0.00 0.00 0.00 2.57
1849 1939 3.181455 ACACACCAGCTAGAAACACATCA 60.181 43.478 0.00 0.00 0.00 3.07
1850 1940 3.403038 ACACACCAGCTAGAAACACATC 58.597 45.455 0.00 0.00 0.00 3.06
1851 1941 3.492102 ACACACCAGCTAGAAACACAT 57.508 42.857 0.00 0.00 0.00 3.21
1852 1942 3.202906 GAACACACCAGCTAGAAACACA 58.797 45.455 0.00 0.00 0.00 3.72
1853 1943 3.202906 TGAACACACCAGCTAGAAACAC 58.797 45.455 0.00 0.00 0.00 3.32
1854 1944 3.552132 TGAACACACCAGCTAGAAACA 57.448 42.857 0.00 0.00 0.00 2.83
1855 1945 4.757149 AGATTGAACACACCAGCTAGAAAC 59.243 41.667 0.00 0.00 0.00 2.78
1856 1946 4.973168 AGATTGAACACACCAGCTAGAAA 58.027 39.130 0.00 0.00 0.00 2.52
1857 1947 4.623932 AGATTGAACACACCAGCTAGAA 57.376 40.909 0.00 0.00 0.00 2.10
1858 1948 5.479306 GTTAGATTGAACACACCAGCTAGA 58.521 41.667 0.00 0.00 0.00 2.43
1859 1949 4.327357 CGTTAGATTGAACACACCAGCTAG 59.673 45.833 0.00 0.00 0.00 3.42
1860 1950 4.021807 TCGTTAGATTGAACACACCAGCTA 60.022 41.667 0.00 0.00 0.00 3.32
1861 1951 3.067106 CGTTAGATTGAACACACCAGCT 58.933 45.455 0.00 0.00 0.00 4.24
1862 1952 3.064207 TCGTTAGATTGAACACACCAGC 58.936 45.455 0.00 0.00 0.00 4.85
1863 1953 3.121279 CGTCGTTAGATTGAACACACCAG 59.879 47.826 0.00 0.00 0.00 4.00
1864 1954 3.054166 CGTCGTTAGATTGAACACACCA 58.946 45.455 0.00 0.00 0.00 4.17
1865 1955 3.054878 ACGTCGTTAGATTGAACACACC 58.945 45.455 0.00 0.00 0.00 4.16
1866 1956 3.660904 GCACGTCGTTAGATTGAACACAC 60.661 47.826 0.00 0.00 0.00 3.82
1867 1957 2.473609 GCACGTCGTTAGATTGAACACA 59.526 45.455 0.00 0.00 0.00 3.72
1868 1958 2.470140 CGCACGTCGTTAGATTGAACAC 60.470 50.000 0.00 0.00 0.00 3.32
1869 1959 1.717113 CGCACGTCGTTAGATTGAACA 59.283 47.619 0.00 0.00 0.00 3.18
1870 1960 2.398903 CGCACGTCGTTAGATTGAAC 57.601 50.000 0.00 0.00 0.00 3.18
1895 1985 4.874396 CCCAACCTAGAGAAAATAACCGAC 59.126 45.833 0.00 0.00 0.00 4.79
1913 2003 0.600782 CTTGCAATGTGGTGCCCAAC 60.601 55.000 0.00 0.00 44.26 3.77
1939 2029 2.611751 CAACCAAATCGTGATATCCGCA 59.388 45.455 0.00 0.00 0.00 5.69
1953 2043 1.899534 GCCGGTAGCCACAACCAAA 60.900 57.895 1.90 0.00 36.78 3.28
1955 2045 4.690719 CGCCGGTAGCCACAACCA 62.691 66.667 1.90 0.00 38.78 3.67
1957 2047 2.667199 AACGCCGGTAGCCACAAC 60.667 61.111 1.90 0.00 38.78 3.32
1962 2052 2.105729 GTAGGAACGCCGGTAGCC 59.894 66.667 1.90 0.00 39.96 3.93
1972 2062 0.323957 AGAAGGTTGGGCGTAGGAAC 59.676 55.000 0.00 0.00 0.00 3.62
2005 2095 5.298989 TGGTGAAGCGGTTATTATATGGT 57.701 39.130 0.00 0.00 0.00 3.55
2006 2096 7.467267 GCATATGGTGAAGCGGTTATTATATGG 60.467 40.741 21.56 11.95 0.00 2.74
2007 2097 7.065683 TGCATATGGTGAAGCGGTTATTATATG 59.934 37.037 18.80 18.80 0.00 1.78
2008 2098 7.109501 TGCATATGGTGAAGCGGTTATTATAT 58.890 34.615 0.00 0.42 0.00 0.86
2010 2100 5.312895 TGCATATGGTGAAGCGGTTATTAT 58.687 37.500 0.00 0.00 0.00 1.28
2011 2101 4.709250 TGCATATGGTGAAGCGGTTATTA 58.291 39.130 0.00 0.00 0.00 0.98
2015 2128 2.057137 ATGCATATGGTGAAGCGGTT 57.943 45.000 0.00 0.00 0.00 4.44
2025 2138 8.665643 AAACAATTAATGTGGAATGCATATGG 57.334 30.769 0.00 0.00 42.99 2.74
2058 2171 8.911918 ACACAAATAACCAGTATGAACAGTTA 57.088 30.769 0.00 0.00 39.69 2.24
2060 2173 7.817418 AACACAAATAACCAGTATGAACAGT 57.183 32.000 0.00 0.00 39.69 3.55
2061 2174 8.967218 CAAAACACAAATAACCAGTATGAACAG 58.033 33.333 0.00 0.00 39.69 3.16
2062 2175 7.436673 GCAAAACACAAATAACCAGTATGAACA 59.563 33.333 0.00 0.00 39.69 3.18
2067 2183 9.988815 TTAATGCAAAACACAAATAACCAGTAT 57.011 25.926 0.00 0.00 0.00 2.12
2195 2357 6.803154 ACACACTCCAAAGCTAAATAAGTC 57.197 37.500 0.00 0.00 0.00 3.01
2242 2404 1.668151 GAGAGGTGTCGGTGGCAAC 60.668 63.158 0.00 0.00 0.00 4.17
2243 2405 1.816863 GAGAGAGGTGTCGGTGGCAA 61.817 60.000 0.00 0.00 0.00 4.52
2244 2406 2.203640 AGAGAGGTGTCGGTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
2245 2407 2.574399 GAGAGAGGTGTCGGTGGC 59.426 66.667 0.00 0.00 0.00 5.01
2250 2412 3.697045 AGTTAATGAGGAGAGAGGTGTCG 59.303 47.826 0.00 0.00 0.00 4.35
2251 2413 6.969993 ATAGTTAATGAGGAGAGAGGTGTC 57.030 41.667 0.00 0.00 0.00 3.67
2262 2424 7.141363 GCTTATGTGGCAAATAGTTAATGAGG 58.859 38.462 0.00 0.00 0.00 3.86
2276 2438 3.221771 AGACAAGTTTGCTTATGTGGCA 58.778 40.909 0.00 0.00 37.97 4.92
2291 2453 7.360438 GCAAGTAAGAACACATTCCTAGACAAG 60.360 40.741 0.00 0.00 35.18 3.16
2309 2471 6.472686 AGAGGGAGTAACATAGCAAGTAAG 57.527 41.667 0.00 0.00 0.00 2.34
2325 2489 0.031111 TGGGGTGGTCATAGAGGGAG 60.031 60.000 0.00 0.00 0.00 4.30
2335 2499 2.346365 GTCTCGGTTGGGGTGGTC 59.654 66.667 0.00 0.00 0.00 4.02
2340 2504 1.078426 GTGATGGTCTCGGTTGGGG 60.078 63.158 0.00 0.00 0.00 4.96
2343 2507 1.447838 CGGGTGATGGTCTCGGTTG 60.448 63.158 0.00 0.00 0.00 3.77
2373 2537 7.653767 AGTAACTGGAATTTAACTGAACTCG 57.346 36.000 0.00 0.00 0.00 4.18
2467 2663 2.043992 TCTTGAAAAGGGTCTCCACGA 58.956 47.619 0.00 0.00 46.24 4.35
2468 2664 2.143925 GTCTTGAAAAGGGTCTCCACG 58.856 52.381 0.00 0.00 46.24 4.94
2471 2667 5.485209 TCTAAGTCTTGAAAAGGGTCTCC 57.515 43.478 0.00 0.00 46.24 3.71
2474 2670 5.707764 AGCAATCTAAGTCTTGAAAAGGGTC 59.292 40.000 0.00 0.00 46.24 4.46
2543 2739 5.045286 AGGCAACATTATCAGGAGAGTTTCT 60.045 40.000 0.00 0.00 41.41 2.52
2547 2743 5.367937 ACATAGGCAACATTATCAGGAGAGT 59.632 40.000 0.00 0.00 41.41 3.24
2594 2790 3.474600 CAAGATTCCAATCCGATCTGCT 58.525 45.455 0.00 0.00 36.04 4.24
2603 2799 2.752144 CGAGCAGCAAGATTCCAATC 57.248 50.000 0.00 0.00 35.64 2.67
2738 2934 0.246635 ATAAACGCGCCAGTCTGTCT 59.753 50.000 5.73 0.00 0.00 3.41
2860 3056 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2861 3057 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2862 3058 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2863 3059 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2864 3060 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2865 3061 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2866 3062 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2867 3063 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2868 3064 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2869 3065 5.880054 ATTGAGACACTTATTTTGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
2870 3066 7.657336 TCAAATTGAGACACTTATTTTGGGAC 58.343 34.615 0.00 0.00 0.00 4.46
2871 3067 7.831691 TCAAATTGAGACACTTATTTTGGGA 57.168 32.000 0.00 0.00 0.00 4.37
2886 3082 7.809806 GTCCCAAAATAAGTGTCTCAAATTGAG 59.190 37.037 16.39 16.39 45.59 3.02
2887 3083 7.286546 TGTCCCAAAATAAGTGTCTCAAATTGA 59.713 33.333 0.00 0.00 0.00 2.57
2888 3084 7.432869 TGTCCCAAAATAAGTGTCTCAAATTG 58.567 34.615 0.00 0.00 0.00 2.32
2889 3085 7.505585 TCTGTCCCAAAATAAGTGTCTCAAATT 59.494 33.333 0.00 0.00 0.00 1.82
2890 3086 7.004086 TCTGTCCCAAAATAAGTGTCTCAAAT 58.996 34.615 0.00 0.00 0.00 2.32
2891 3087 6.361433 TCTGTCCCAAAATAAGTGTCTCAAA 58.639 36.000 0.00 0.00 0.00 2.69
2892 3088 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
2893 3089 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
2894 3090 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
2895 3091 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
2896 3092 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
2897 3093 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
2898 3094 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
2899 3095 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
2900 3096 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
2901 3097 4.226620 GGTACTCCCTCTGTCCCAAAATAA 59.773 45.833 0.00 0.00 0.00 1.40
2902 3098 3.778629 GGTACTCCCTCTGTCCCAAAATA 59.221 47.826 0.00 0.00 0.00 1.40
2903 3099 2.576648 GGTACTCCCTCTGTCCCAAAAT 59.423 50.000 0.00 0.00 0.00 1.82
2904 3100 1.982958 GGTACTCCCTCTGTCCCAAAA 59.017 52.381 0.00 0.00 0.00 2.44
2905 3101 1.151413 AGGTACTCCCTCTGTCCCAAA 59.849 52.381 0.00 0.00 40.71 3.28
2906 3102 0.790993 AGGTACTCCCTCTGTCCCAA 59.209 55.000 0.00 0.00 40.71 4.12
2907 3103 0.790993 AAGGTACTCCCTCTGTCCCA 59.209 55.000 0.00 0.00 45.47 4.37
2908 3104 1.954035 AAAGGTACTCCCTCTGTCCC 58.046 55.000 0.00 0.00 45.47 4.46
2909 3105 3.559384 CCAAAAAGGTACTCCCTCTGTCC 60.559 52.174 0.00 0.00 45.47 4.02
2910 3106 3.559384 CCCAAAAAGGTACTCCCTCTGTC 60.559 52.174 0.00 0.00 45.47 3.51
2911 3107 2.375509 CCCAAAAAGGTACTCCCTCTGT 59.624 50.000 0.00 0.00 45.47 3.41
2912 3108 2.375509 ACCCAAAAAGGTACTCCCTCTG 59.624 50.000 0.00 0.00 45.47 3.35
2913 3109 2.375509 CACCCAAAAAGGTACTCCCTCT 59.624 50.000 0.00 0.00 45.47 3.69
2914 3110 2.374170 TCACCCAAAAAGGTACTCCCTC 59.626 50.000 0.00 0.00 45.47 4.30
2916 3112 2.963599 TCACCCAAAAAGGTACTCCC 57.036 50.000 0.00 0.00 38.49 4.30
2917 3113 4.219944 GGAATTCACCCAAAAAGGTACTCC 59.780 45.833 7.93 0.00 38.49 3.85
2918 3114 4.830600 TGGAATTCACCCAAAAAGGTACTC 59.169 41.667 7.93 0.00 38.49 2.59
2919 3115 5.245977 CATGGAATTCACCCAAAAAGGTACT 59.754 40.000 7.93 0.00 38.39 2.73
2920 3116 5.478407 CATGGAATTCACCCAAAAAGGTAC 58.522 41.667 7.93 0.00 38.39 3.34
2971 3167 7.911205 TCTTTACGAACACACCTTTACAAAATG 59.089 33.333 0.00 0.00 0.00 2.32
2972 3168 7.911727 GTCTTTACGAACACACCTTTACAAAAT 59.088 33.333 0.00 0.00 0.00 1.82
2977 3173 5.971895 TGTCTTTACGAACACACCTTTAC 57.028 39.130 0.00 0.00 0.00 2.01
2978 3174 6.422701 CAGATGTCTTTACGAACACACCTTTA 59.577 38.462 0.00 0.00 0.00 1.85
2980 3176 4.750098 CAGATGTCTTTACGAACACACCTT 59.250 41.667 0.00 0.00 0.00 3.50
3023 3219 4.284746 ACCATTATCTTTCCGGAGAGATCC 59.715 45.833 34.00 0.00 34.60 3.36
3075 3271 8.891720 TCTTCGTTACTAGGAGAGTTAATCTTC 58.108 37.037 0.00 0.00 38.84 2.87
3097 3293 7.121759 GGGTTTTGGGGTATTAGTTTAGTCTTC 59.878 40.741 0.00 0.00 0.00 2.87
3109 3305 0.415830 CCAGGGGGTTTTGGGGTATT 59.584 55.000 0.00 0.00 0.00 1.89
3180 3376 4.012895 GTTGTGTCCGGTGCAGCG 62.013 66.667 30.27 30.27 0.00 5.18
3181 3377 2.117941 GAAGTTGTGTCCGGTGCAGC 62.118 60.000 5.64 5.64 0.00 5.25
3182 3378 1.507141 GGAAGTTGTGTCCGGTGCAG 61.507 60.000 0.00 0.00 0.00 4.41
3183 3379 1.525077 GGAAGTTGTGTCCGGTGCA 60.525 57.895 0.00 0.00 0.00 4.57
3188 3384 6.311935 TCGAAAATAATAGGAAGTTGTGTCCG 59.688 38.462 0.00 0.00 40.36 4.79
3224 3420 3.092301 TGATCATAGATACCGCCTCAGG 58.908 50.000 0.00 0.00 37.30 3.86
3227 3423 8.547967 TTTAAATTGATCATAGATACCGCCTC 57.452 34.615 0.00 0.00 0.00 4.70
3228 3424 7.607991 CCTTTAAATTGATCATAGATACCGCCT 59.392 37.037 0.00 0.00 0.00 5.52
3229 3425 7.626452 GCCTTTAAATTGATCATAGATACCGCC 60.626 40.741 0.00 0.00 0.00 6.13
3230 3426 7.119846 AGCCTTTAAATTGATCATAGATACCGC 59.880 37.037 0.00 0.00 0.00 5.68
3231 3427 8.446273 CAGCCTTTAAATTGATCATAGATACCG 58.554 37.037 0.00 0.00 0.00 4.02
3232 3428 8.734386 CCAGCCTTTAAATTGATCATAGATACC 58.266 37.037 0.00 0.00 0.00 2.73
3233 3429 9.507329 TCCAGCCTTTAAATTGATCATAGATAC 57.493 33.333 0.00 0.00 0.00 2.24
3234 3430 9.730705 CTCCAGCCTTTAAATTGATCATAGATA 57.269 33.333 0.00 0.00 0.00 1.98
3235 3431 8.443176 TCTCCAGCCTTTAAATTGATCATAGAT 58.557 33.333 0.00 0.00 0.00 1.98
3236 3432 7.716998 GTCTCCAGCCTTTAAATTGATCATAGA 59.283 37.037 0.00 0.00 0.00 1.98
3237 3433 7.040823 GGTCTCCAGCCTTTAAATTGATCATAG 60.041 40.741 0.00 0.00 0.00 2.23
3238 3434 6.772716 GGTCTCCAGCCTTTAAATTGATCATA 59.227 38.462 0.00 0.00 0.00 2.15
3239 3435 5.595952 GGTCTCCAGCCTTTAAATTGATCAT 59.404 40.000 0.00 0.00 0.00 2.45
3240 3436 4.949856 GGTCTCCAGCCTTTAAATTGATCA 59.050 41.667 0.00 0.00 0.00 2.92
3241 3437 4.949856 TGGTCTCCAGCCTTTAAATTGATC 59.050 41.667 0.00 0.00 0.00 2.92
3242 3438 4.934356 TGGTCTCCAGCCTTTAAATTGAT 58.066 39.130 0.00 0.00 0.00 2.57
3243 3439 4.380843 TGGTCTCCAGCCTTTAAATTGA 57.619 40.909 0.00 0.00 0.00 2.57
3244 3440 5.394553 GGATTGGTCTCCAGCCTTTAAATTG 60.395 44.000 0.00 0.00 33.81 2.32
3245 3441 4.711846 GGATTGGTCTCCAGCCTTTAAATT 59.288 41.667 0.00 0.00 33.81 1.82
3246 3442 4.264352 TGGATTGGTCTCCAGCCTTTAAAT 60.264 41.667 9.79 0.00 40.43 1.40
3247 3443 3.075283 TGGATTGGTCTCCAGCCTTTAAA 59.925 43.478 9.79 0.00 40.43 1.52
3248 3444 2.647299 TGGATTGGTCTCCAGCCTTTAA 59.353 45.455 9.79 0.00 40.43 1.52
3249 3445 2.274542 TGGATTGGTCTCCAGCCTTTA 58.725 47.619 9.79 0.00 40.43 1.85
3250 3446 1.075601 TGGATTGGTCTCCAGCCTTT 58.924 50.000 9.79 0.00 40.43 3.11
3251 3447 2.791253 TGGATTGGTCTCCAGCCTT 58.209 52.632 9.79 0.00 40.43 4.35
3252 3448 4.587520 TGGATTGGTCTCCAGCCT 57.412 55.556 9.79 0.00 40.43 4.58
3256 3452 7.789831 GGATATATATACCTGGATTGGTCTCCA 59.210 40.741 0.00 0.00 43.09 3.86
3257 3453 7.039644 CGGATATATATACCTGGATTGGTCTCC 60.040 44.444 0.00 0.00 41.22 3.71
3258 3454 7.724506 TCGGATATATATACCTGGATTGGTCTC 59.275 40.741 0.00 0.00 41.22 3.36
3259 3455 7.592736 TCGGATATATATACCTGGATTGGTCT 58.407 38.462 0.00 0.00 41.22 3.85
3260 3456 7.524038 GCTCGGATATATATACCTGGATTGGTC 60.524 44.444 0.00 0.00 41.22 4.02
3261 3457 6.267928 GCTCGGATATATATACCTGGATTGGT 59.732 42.308 0.00 0.00 43.66 3.67
3262 3458 6.570571 CGCTCGGATATATATACCTGGATTGG 60.571 46.154 0.00 0.00 0.00 3.16
3263 3459 6.206829 TCGCTCGGATATATATACCTGGATTG 59.793 42.308 0.00 0.00 0.00 2.67
3264 3460 6.304624 TCGCTCGGATATATATACCTGGATT 58.695 40.000 0.00 0.00 0.00 3.01
3265 3461 5.877491 TCGCTCGGATATATATACCTGGAT 58.123 41.667 0.00 0.00 0.00 3.41
3266 3462 5.300411 TCGCTCGGATATATATACCTGGA 57.700 43.478 0.00 0.00 0.00 3.86
3267 3463 5.278364 GGTTCGCTCGGATATATATACCTGG 60.278 48.000 0.00 0.00 0.00 4.45
3268 3464 5.298527 TGGTTCGCTCGGATATATATACCTG 59.701 44.000 0.00 0.00 0.00 4.00
3269 3465 5.443283 TGGTTCGCTCGGATATATATACCT 58.557 41.667 0.00 0.00 0.00 3.08
3270 3466 5.762825 TGGTTCGCTCGGATATATATACC 57.237 43.478 0.00 0.48 0.00 2.73
3271 3467 9.343103 CATATTGGTTCGCTCGGATATATATAC 57.657 37.037 0.00 0.00 0.00 1.47
3272 3468 9.074576 ACATATTGGTTCGCTCGGATATATATA 57.925 33.333 0.00 0.00 0.00 0.86
3273 3469 7.867909 CACATATTGGTTCGCTCGGATATATAT 59.132 37.037 0.00 0.00 0.00 0.86
3274 3470 7.200455 CACATATTGGTTCGCTCGGATATATA 58.800 38.462 0.00 0.00 0.00 0.86
3275 3471 6.042777 CACATATTGGTTCGCTCGGATATAT 58.957 40.000 0.00 0.00 0.00 0.86
3276 3472 5.407502 CACATATTGGTTCGCTCGGATATA 58.592 41.667 0.00 0.00 0.00 0.86
3277 3473 4.245660 CACATATTGGTTCGCTCGGATAT 58.754 43.478 0.00 0.00 0.00 1.63
3278 3474 3.554129 CCACATATTGGTTCGCTCGGATA 60.554 47.826 0.00 0.00 41.10 2.59
3279 3475 2.483876 CACATATTGGTTCGCTCGGAT 58.516 47.619 0.00 0.00 0.00 4.18
3280 3476 1.472552 CCACATATTGGTTCGCTCGGA 60.473 52.381 0.00 0.00 41.10 4.55
3281 3477 0.937304 CCACATATTGGTTCGCTCGG 59.063 55.000 0.00 0.00 41.10 4.63
3347 3543 1.153549 CCAGCGGCAAGTCTAGGAC 60.154 63.158 1.45 0.00 0.00 3.85
3365 3561 9.321590 GAAATAAATTCAGAAAAATGCAAGCAC 57.678 29.630 0.00 0.00 37.99 4.40
3399 3595 1.667830 ACTGAACACACATCGCCGG 60.668 57.895 0.00 0.00 0.00 6.13
3400 3596 1.492873 CACTGAACACACATCGCCG 59.507 57.895 0.00 0.00 0.00 6.46
3415 3611 0.317479 CGAAAACGTCTCCTCCCACT 59.683 55.000 0.00 0.00 0.00 4.00
3419 3615 0.239347 TCGACGAAAACGTCTCCTCC 59.761 55.000 17.92 0.00 36.81 4.30
3434 3630 6.146510 TCACCATAAACACATTTGTAGTCGAC 59.853 38.462 7.70 7.70 33.55 4.20
3436 3632 6.147164 AGTCACCATAAACACATTTGTAGTCG 59.853 38.462 0.00 0.00 33.55 4.18
3489 3685 1.622811 AGCACCTTTGAGAGACTGAGG 59.377 52.381 0.00 0.00 0.00 3.86
3501 3697 3.392616 CACCCTATCCTATGAGCACCTTT 59.607 47.826 0.00 0.00 0.00 3.11
3504 3700 2.037772 CACACCCTATCCTATGAGCACC 59.962 54.545 0.00 0.00 0.00 5.01
3512 3708 2.626266 CACATACGCACACCCTATCCTA 59.374 50.000 0.00 0.00 0.00 2.94
3520 3716 2.607635 CCTATGAACACATACGCACACC 59.392 50.000 0.00 0.00 0.00 4.16
3521 3717 2.607635 CCCTATGAACACATACGCACAC 59.392 50.000 0.00 0.00 0.00 3.82
3529 3725 6.841601 ACATATACTTGCCCTATGAACACAT 58.158 36.000 0.00 0.00 0.00 3.21
3536 3732 7.596621 CGCTCATATACATATACTTGCCCTATG 59.403 40.741 0.00 0.00 0.00 2.23
3543 3739 6.195428 CGCAGACGCTCATATACATATACTTG 59.805 42.308 0.00 0.00 35.30 3.16
3600 3796 2.297597 CACAATCTCCCTATCTCCGGAC 59.702 54.545 0.00 0.00 0.00 4.79
3605 3801 4.591072 AGGTAAGCACAATCTCCCTATCTC 59.409 45.833 0.00 0.00 0.00 2.75
3639 3835 4.498009 CCATGGCTAACCTTATTTTGAGCG 60.498 45.833 0.00 0.00 36.63 5.03
3643 3839 3.706086 AGGCCATGGCTAACCTTATTTTG 59.294 43.478 34.70 0.00 41.60 2.44
3671 3867 0.179073 CAGGGTGCTTCGTCCATAGG 60.179 60.000 0.00 0.00 0.00 2.57
3742 4504 3.628032 GTGACTAGAAATTAAGCTGCCCC 59.372 47.826 0.00 0.00 0.00 5.80
3745 4507 8.338986 GGAATAAGTGACTAGAAATTAAGCTGC 58.661 37.037 0.00 0.00 0.00 5.25
3747 4509 9.825109 GAGGAATAAGTGACTAGAAATTAAGCT 57.175 33.333 0.00 0.00 0.00 3.74
3748 4510 9.047371 GGAGGAATAAGTGACTAGAAATTAAGC 57.953 37.037 0.00 0.00 0.00 3.09
3772 5673 5.740290 AGAAGATACTCTTTGTTTCCGGA 57.260 39.130 0.00 0.00 36.73 5.14
3773 5674 6.803154 AAAGAAGATACTCTTTGTTTCCGG 57.197 37.500 0.00 0.00 42.68 5.14
3812 5713 9.793252 GAAGAAGATTTGAGCTGCATAAATAAA 57.207 29.630 12.13 1.40 0.00 1.40
3813 5714 8.408601 GGAAGAAGATTTGAGCTGCATAAATAA 58.591 33.333 12.13 0.00 0.00 1.40
3814 5715 7.776969 AGGAAGAAGATTTGAGCTGCATAAATA 59.223 33.333 12.13 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.