Multiple sequence alignment - TraesCS5D01G026600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G026600 chr5D 100.000 3176 0 0 1 3176 24331808 24334983 0.000000e+00 5866.0
1 TraesCS5D01G026600 chr5D 98.438 320 4 1 220 538 513536115 513536434 2.140000e-156 562.0
2 TraesCS5D01G026600 chr5A 91.810 1685 84 16 538 2206 17569983 17571629 0.000000e+00 2298.0
3 TraesCS5D01G026600 chr5A 89.407 236 12 8 1 226 17569756 17569988 5.190000e-73 285.0
4 TraesCS5D01G026600 chr5A 95.946 74 3 0 2235 2308 17571683 17571756 1.550000e-23 121.0
5 TraesCS5D01G026600 chr5A 94.286 35 2 0 758 792 17570147 17570181 2.000000e-03 54.7
6 TraesCS5D01G026600 chr5B 90.909 1408 70 21 812 2180 17998241 17996853 0.000000e+00 1838.0
7 TraesCS5D01G026600 chr5B 86.458 96 4 2 598 693 17998407 17998321 2.610000e-16 97.1
8 TraesCS5D01G026600 chr1B 88.876 845 87 7 2335 3176 487945997 487946837 0.000000e+00 1033.0
9 TraesCS5D01G026600 chr1B 94.565 276 13 2 2334 2608 442154433 442154159 2.930000e-115 425.0
10 TraesCS5D01G026600 chr3D 96.739 552 17 1 2625 3176 323316004 323316554 0.000000e+00 918.0
11 TraesCS5D01G026600 chr3D 99.054 317 2 1 223 538 571057620 571057304 4.600000e-158 568.0
12 TraesCS5D01G026600 chr3D 96.885 321 4 2 223 542 5678921 5679236 1.680000e-147 532.0
13 TraesCS5D01G026600 chr3D 97.112 277 6 2 2334 2608 323315675 323315951 1.730000e-127 466.0
14 TraesCS5D01G026600 chr1D 96.196 552 20 1 2625 3176 468166172 468165622 0.000000e+00 902.0
15 TraesCS5D01G026600 chr1D 95.833 552 21 2 2625 3176 45683642 45684191 0.000000e+00 891.0
16 TraesCS5D01G026600 chr1D 98.442 321 4 1 221 540 110731422 110731742 5.950000e-157 564.0
17 TraesCS5D01G026600 chr1D 96.043 278 9 2 2333 2608 468166502 468166225 4.830000e-123 451.0
18 TraesCS5D01G026600 chr1D 94.585 277 13 2 2334 2608 45683313 45683589 8.140000e-116 427.0
19 TraesCS5D01G026600 chr7A 96.014 552 21 1 2625 3176 36999126 36998576 0.000000e+00 896.0
20 TraesCS5D01G026600 chr7A 95.471 552 24 1 2625 3176 695874859 695874309 0.000000e+00 880.0
21 TraesCS5D01G026600 chr7A 95.652 276 11 1 2334 2608 423559465 423559190 2.910000e-120 442.0
22 TraesCS5D01G026600 chr6A 96.014 552 21 1 2625 3176 486591548 486590998 0.000000e+00 896.0
23 TraesCS5D01G026600 chr3A 94.928 552 27 1 2625 3176 7648508 7649058 0.000000e+00 863.0
24 TraesCS5D01G026600 chr2A 94.928 552 27 1 2625 3176 539989124 539988574 0.000000e+00 863.0
25 TraesCS5D01G026600 chr4D 98.442 321 4 1 221 540 357986398 357986078 5.950000e-157 564.0
26 TraesCS5D01G026600 chr4B 94.410 322 16 2 223 543 88938512 88938832 7.910000e-136 494.0
27 TraesCS5D01G026600 chrUn 94.062 320 17 2 220 538 310085399 310085717 4.760000e-133 484.0
28 TraesCS5D01G026600 chrUn 87.462 327 33 6 221 543 300672790 300672468 1.390000e-98 370.0
29 TraesCS5D01G026600 chr7D 96.727 275 9 0 2334 2608 170231731 170231457 2.890000e-125 459.0
30 TraesCS5D01G026600 chr1A 96.727 275 9 0 2334 2608 294043631 294043905 2.890000e-125 459.0
31 TraesCS5D01G026600 chr7B 92.308 325 17 6 223 545 67812374 67812056 3.730000e-124 455.0
32 TraesCS5D01G026600 chr2D 96.390 277 7 3 2334 2608 572695998 572695723 1.340000e-123 453.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G026600 chr5D 24331808 24334983 3175 False 5866.000 5866 100.00000 1 3176 1 chr5D.!!$F1 3175
1 TraesCS5D01G026600 chr5A 17569756 17571756 2000 False 689.675 2298 92.86225 1 2308 4 chr5A.!!$F1 2307
2 TraesCS5D01G026600 chr5B 17996853 17998407 1554 True 967.550 1838 88.68350 598 2180 2 chr5B.!!$R1 1582
3 TraesCS5D01G026600 chr1B 487945997 487946837 840 False 1033.000 1033 88.87600 2335 3176 1 chr1B.!!$F1 841
4 TraesCS5D01G026600 chr3D 323315675 323316554 879 False 692.000 918 96.92550 2334 3176 2 chr3D.!!$F2 842
5 TraesCS5D01G026600 chr1D 468165622 468166502 880 True 676.500 902 96.11950 2333 3176 2 chr1D.!!$R1 843
6 TraesCS5D01G026600 chr1D 45683313 45684191 878 False 659.000 891 95.20900 2334 3176 2 chr1D.!!$F2 842
7 TraesCS5D01G026600 chr7A 36998576 36999126 550 True 896.000 896 96.01400 2625 3176 1 chr7A.!!$R1 551
8 TraesCS5D01G026600 chr7A 695874309 695874859 550 True 880.000 880 95.47100 2625 3176 1 chr7A.!!$R3 551
9 TraesCS5D01G026600 chr6A 486590998 486591548 550 True 896.000 896 96.01400 2625 3176 1 chr6A.!!$R1 551
10 TraesCS5D01G026600 chr3A 7648508 7649058 550 False 863.000 863 94.92800 2625 3176 1 chr3A.!!$F1 551
11 TraesCS5D01G026600 chr2A 539988574 539989124 550 True 863.000 863 94.92800 2625 3176 1 chr2A.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 492 0.032952 TACAGCGACGCCACTTCTTT 59.967 50.0 17.79 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2292 0.106268 ACATTGTGGACAGGGCAACA 60.106 50.0 0.0 0.0 39.74 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.625467 ACTCCCTCTGTCTTAAAATATAAGGT 57.375 34.615 0.00 0.00 0.00 3.50
71 73 8.745590 GGTTAACCTATGATTTGTTTGGTACAT 58.254 33.333 17.83 0.00 39.30 2.29
131 142 4.947388 TGGTAAATCAATAAGTGGTGGAGC 59.053 41.667 0.00 0.00 0.00 4.70
218 231 4.494091 AACCAGAGAGAGAGAGAGAGAG 57.506 50.000 0.00 0.00 0.00 3.20
219 232 3.724478 ACCAGAGAGAGAGAGAGAGAGA 58.276 50.000 0.00 0.00 0.00 3.10
220 233 4.302067 ACCAGAGAGAGAGAGAGAGAGAT 58.698 47.826 0.00 0.00 0.00 2.75
221 234 5.467738 ACCAGAGAGAGAGAGAGAGAGATA 58.532 45.833 0.00 0.00 0.00 1.98
222 235 5.905331 ACCAGAGAGAGAGAGAGAGAGATAA 59.095 44.000 0.00 0.00 0.00 1.75
223 236 6.042552 ACCAGAGAGAGAGAGAGAGAGATAAG 59.957 46.154 0.00 0.00 0.00 1.73
224 237 6.462500 CAGAGAGAGAGAGAGAGAGATAAGG 58.538 48.000 0.00 0.00 0.00 2.69
225 238 5.545723 AGAGAGAGAGAGAGAGAGATAAGGG 59.454 48.000 0.00 0.00 0.00 3.95
226 239 4.042187 AGAGAGAGAGAGAGAGATAAGGGC 59.958 50.000 0.00 0.00 0.00 5.19
227 240 3.721575 AGAGAGAGAGAGAGATAAGGGCA 59.278 47.826 0.00 0.00 0.00 5.36
228 241 4.354987 AGAGAGAGAGAGAGATAAGGGCAT 59.645 45.833 0.00 0.00 0.00 4.40
229 242 4.410099 AGAGAGAGAGAGATAAGGGCATG 58.590 47.826 0.00 0.00 0.00 4.06
230 243 4.140947 AGAGAGAGAGAGATAAGGGCATGT 60.141 45.833 0.00 0.00 0.00 3.21
231 244 5.074377 AGAGAGAGAGAGATAAGGGCATGTA 59.926 44.000 0.00 0.00 0.00 2.29
232 245 5.076873 AGAGAGAGAGATAAGGGCATGTAC 58.923 45.833 0.00 0.00 0.00 2.90
233 246 4.809193 AGAGAGAGATAAGGGCATGTACA 58.191 43.478 0.00 0.00 0.00 2.90
234 247 5.211973 AGAGAGAGATAAGGGCATGTACAA 58.788 41.667 0.00 0.00 0.00 2.41
235 248 5.069781 AGAGAGAGATAAGGGCATGTACAAC 59.930 44.000 0.00 0.00 0.00 3.32
236 249 4.051922 GAGAGATAAGGGCATGTACAACG 58.948 47.826 0.00 0.00 0.00 4.10
237 250 2.544267 GAGATAAGGGCATGTACAACGC 59.456 50.000 11.23 11.23 0.00 4.84
238 251 1.602377 GATAAGGGCATGTACAACGCC 59.398 52.381 24.63 24.63 45.47 5.68
241 254 4.174129 GGCATGTACAACGCCGGC 62.174 66.667 19.07 19.07 35.79 6.13
242 255 4.514569 GCATGTACAACGCCGGCG 62.515 66.667 44.88 44.88 46.03 6.46
243 256 4.514569 CATGTACAACGCCGGCGC 62.515 66.667 46.22 30.29 44.19 6.53
244 257 4.752879 ATGTACAACGCCGGCGCT 62.753 61.111 46.22 34.93 44.19 5.92
245 258 3.359515 ATGTACAACGCCGGCGCTA 62.360 57.895 46.22 29.67 44.19 4.26
246 259 2.810458 GTACAACGCCGGCGCTAA 60.810 61.111 46.22 27.37 44.19 3.09
247 260 2.169146 GTACAACGCCGGCGCTAAT 61.169 57.895 46.22 30.80 44.19 1.73
248 261 2.168503 TACAACGCCGGCGCTAATG 61.169 57.895 46.22 36.91 44.19 1.90
249 262 2.560051 TACAACGCCGGCGCTAATGA 62.560 55.000 46.22 25.05 44.19 2.57
250 263 3.192922 AACGCCGGCGCTAATGAC 61.193 61.111 46.22 3.97 44.19 3.06
251 264 3.943479 AACGCCGGCGCTAATGACA 62.943 57.895 46.22 0.00 44.19 3.58
252 265 3.630148 CGCCGGCGCTAATGACAG 61.630 66.667 38.48 5.99 0.00 3.51
253 266 3.272334 GCCGGCGCTAATGACAGG 61.272 66.667 12.58 0.00 0.00 4.00
254 267 3.272334 CCGGCGCTAATGACAGGC 61.272 66.667 7.64 0.00 0.00 4.85
258 271 4.730081 CGCTAATGACAGGCGCTA 57.270 55.556 7.64 0.00 42.28 4.26
259 272 2.510948 CGCTAATGACAGGCGCTAG 58.489 57.895 7.64 2.12 42.28 3.42
260 273 0.941463 CGCTAATGACAGGCGCTAGG 60.941 60.000 7.64 0.00 42.28 3.02
261 274 0.389391 GCTAATGACAGGCGCTAGGA 59.611 55.000 7.64 0.00 0.00 2.94
262 275 1.001406 GCTAATGACAGGCGCTAGGAT 59.999 52.381 7.64 0.00 0.00 3.24
263 276 2.548920 GCTAATGACAGGCGCTAGGATT 60.549 50.000 7.64 5.96 0.00 3.01
264 277 2.246719 AATGACAGGCGCTAGGATTC 57.753 50.000 7.64 0.00 0.00 2.52
265 278 1.123077 ATGACAGGCGCTAGGATTCA 58.877 50.000 7.64 2.18 0.00 2.57
266 279 0.175760 TGACAGGCGCTAGGATTCAC 59.824 55.000 7.64 0.00 0.00 3.18
267 280 0.461961 GACAGGCGCTAGGATTCACT 59.538 55.000 7.64 0.00 0.00 3.41
268 281 0.905357 ACAGGCGCTAGGATTCACTT 59.095 50.000 7.64 0.00 0.00 3.16
269 282 1.134670 ACAGGCGCTAGGATTCACTTC 60.135 52.381 7.64 0.00 0.00 3.01
270 283 0.466124 AGGCGCTAGGATTCACTTCC 59.534 55.000 7.64 0.00 35.90 3.46
272 285 1.576356 GCGCTAGGATTCACTTCCTG 58.424 55.000 0.00 0.00 45.85 3.86
273 286 1.808133 GCGCTAGGATTCACTTCCTGG 60.808 57.143 0.00 1.54 45.85 4.45
275 288 2.629336 CTAGGATTCACTTCCTGGCC 57.371 55.000 0.00 0.00 45.85 5.36
276 289 0.830648 TAGGATTCACTTCCTGGCCG 59.169 55.000 0.00 0.00 45.85 6.13
277 290 1.201429 AGGATTCACTTCCTGGCCGT 61.201 55.000 0.00 0.00 44.63 5.68
278 291 0.322546 GGATTCACTTCCTGGCCGTT 60.323 55.000 0.00 0.00 32.68 4.44
279 292 1.065709 GGATTCACTTCCTGGCCGTTA 60.066 52.381 0.00 0.00 32.68 3.18
280 293 2.421529 GGATTCACTTCCTGGCCGTTAT 60.422 50.000 0.00 0.00 32.68 1.89
281 294 2.107950 TTCACTTCCTGGCCGTTATG 57.892 50.000 0.00 0.00 0.00 1.90
282 295 0.251916 TCACTTCCTGGCCGTTATGG 59.748 55.000 0.00 0.00 42.50 2.74
283 296 0.035439 CACTTCCTGGCCGTTATGGT 60.035 55.000 0.00 0.00 41.21 3.55
284 297 0.252197 ACTTCCTGGCCGTTATGGTC 59.748 55.000 0.00 0.00 45.24 4.02
285 298 0.541863 CTTCCTGGCCGTTATGGTCT 59.458 55.000 0.00 0.00 45.26 3.85
286 299 1.760613 CTTCCTGGCCGTTATGGTCTA 59.239 52.381 0.00 0.00 45.26 2.59
287 300 1.868713 TCCTGGCCGTTATGGTCTAA 58.131 50.000 0.00 0.00 45.26 2.10
288 301 2.404559 TCCTGGCCGTTATGGTCTAAT 58.595 47.619 0.00 0.00 45.26 1.73
289 302 2.367567 TCCTGGCCGTTATGGTCTAATC 59.632 50.000 0.00 0.00 45.26 1.75
290 303 2.550208 CCTGGCCGTTATGGTCTAATCC 60.550 54.545 0.00 0.00 45.26 3.01
291 304 2.368875 CTGGCCGTTATGGTCTAATCCT 59.631 50.000 0.00 0.00 45.26 3.24
292 305 2.104111 TGGCCGTTATGGTCTAATCCTG 59.896 50.000 0.00 0.00 45.26 3.86
293 306 2.550208 GGCCGTTATGGTCTAATCCTGG 60.550 54.545 0.00 0.00 40.15 4.45
294 307 2.104281 GCCGTTATGGTCTAATCCTGGT 59.896 50.000 0.00 0.00 41.21 4.00
295 308 3.433173 GCCGTTATGGTCTAATCCTGGTT 60.433 47.826 0.00 0.00 41.21 3.67
296 309 4.127171 CCGTTATGGTCTAATCCTGGTTG 58.873 47.826 0.00 0.00 0.00 3.77
297 310 4.141801 CCGTTATGGTCTAATCCTGGTTGA 60.142 45.833 0.00 0.00 0.00 3.18
298 311 5.454755 CCGTTATGGTCTAATCCTGGTTGAT 60.455 44.000 0.00 0.00 0.00 2.57
299 312 5.696724 CGTTATGGTCTAATCCTGGTTGATC 59.303 44.000 0.00 0.00 0.00 2.92
300 313 4.713792 ATGGTCTAATCCTGGTTGATCC 57.286 45.455 0.00 0.00 0.00 3.36
301 314 2.777692 TGGTCTAATCCTGGTTGATCCC 59.222 50.000 0.00 0.00 34.77 3.85
302 315 2.777692 GGTCTAATCCTGGTTGATCCCA 59.222 50.000 0.00 0.00 34.77 4.37
312 325 3.565307 TGGTTGATCCCAGGATTATTGC 58.435 45.455 0.00 0.00 34.60 3.56
313 326 3.205056 TGGTTGATCCCAGGATTATTGCT 59.795 43.478 0.00 0.00 34.60 3.91
314 327 4.415179 TGGTTGATCCCAGGATTATTGCTA 59.585 41.667 0.00 0.00 34.60 3.49
315 328 5.006386 GGTTGATCCCAGGATTATTGCTAG 58.994 45.833 0.00 0.00 34.60 3.42
316 329 4.292186 TGATCCCAGGATTATTGCTAGC 57.708 45.455 8.10 8.10 34.60 3.42
317 330 2.839486 TCCCAGGATTATTGCTAGCG 57.161 50.000 10.77 0.00 0.00 4.26
318 331 2.047061 TCCCAGGATTATTGCTAGCGT 58.953 47.619 10.77 3.82 0.00 5.07
319 332 2.037251 TCCCAGGATTATTGCTAGCGTC 59.963 50.000 10.77 3.03 0.00 5.19
320 333 2.061773 CCAGGATTATTGCTAGCGTCG 58.938 52.381 10.77 0.00 0.00 5.12
321 334 2.288213 CCAGGATTATTGCTAGCGTCGA 60.288 50.000 10.77 0.00 0.00 4.20
322 335 3.579709 CAGGATTATTGCTAGCGTCGAT 58.420 45.455 10.77 1.62 0.00 3.59
323 336 3.366121 CAGGATTATTGCTAGCGTCGATG 59.634 47.826 10.77 0.00 0.00 3.84
324 337 2.092838 GGATTATTGCTAGCGTCGATGC 59.907 50.000 22.11 22.11 0.00 3.91
325 338 1.497991 TTATTGCTAGCGTCGATGCC 58.502 50.000 25.54 11.44 34.65 4.40
326 339 0.387565 TATTGCTAGCGTCGATGCCA 59.612 50.000 25.54 12.07 34.65 4.92
327 340 0.877649 ATTGCTAGCGTCGATGCCAG 60.878 55.000 25.54 22.21 34.65 4.85
328 341 2.659897 GCTAGCGTCGATGCCAGG 60.660 66.667 25.54 16.17 34.65 4.45
329 342 2.028190 CTAGCGTCGATGCCAGGG 59.972 66.667 25.54 9.77 34.65 4.45
330 343 4.221422 TAGCGTCGATGCCAGGGC 62.221 66.667 25.54 2.62 42.35 5.19
336 349 4.889112 CGATGCCAGGGCTGCCAT 62.889 66.667 22.05 11.43 42.51 4.40
337 350 2.910994 GATGCCAGGGCTGCCATC 60.911 66.667 22.05 10.52 38.09 3.51
338 351 4.889112 ATGCCAGGGCTGCCATCG 62.889 66.667 22.05 7.41 42.51 3.84
350 363 3.564027 CCATCGGGCGCTTCGTTC 61.564 66.667 19.26 0.00 0.00 3.95
351 364 2.509336 CATCGGGCGCTTCGTTCT 60.509 61.111 19.26 6.87 0.00 3.01
352 365 2.100631 CATCGGGCGCTTCGTTCTT 61.101 57.895 19.26 5.09 0.00 2.52
353 366 1.375523 ATCGGGCGCTTCGTTCTTT 60.376 52.632 19.26 3.20 0.00 2.52
354 367 0.953960 ATCGGGCGCTTCGTTCTTTT 60.954 50.000 19.26 1.86 0.00 2.27
355 368 1.161563 TCGGGCGCTTCGTTCTTTTT 61.162 50.000 19.26 0.00 0.00 1.94
377 390 7.639113 TTTTTCTTTCCTCTGAGCTGTTTAA 57.361 32.000 0.00 0.00 0.00 1.52
378 391 6.619801 TTTCTTTCCTCTGAGCTGTTTAAC 57.380 37.500 0.00 0.00 0.00 2.01
379 392 4.307432 TCTTTCCTCTGAGCTGTTTAACG 58.693 43.478 0.00 0.00 0.00 3.18
380 393 4.038763 TCTTTCCTCTGAGCTGTTTAACGA 59.961 41.667 0.00 0.00 0.00 3.85
381 394 3.577649 TCCTCTGAGCTGTTTAACGAG 57.422 47.619 0.00 0.00 0.00 4.18
382 395 1.996191 CCTCTGAGCTGTTTAACGAGC 59.004 52.381 0.00 10.12 35.28 5.03
383 396 1.651138 CTCTGAGCTGTTTAACGAGCG 59.349 52.381 0.00 0.00 40.34 5.03
384 397 0.093705 CTGAGCTGTTTAACGAGCGC 59.906 55.000 0.00 0.00 40.34 5.92
385 398 0.319555 TGAGCTGTTTAACGAGCGCT 60.320 50.000 11.27 11.27 40.34 5.92
386 399 0.093705 GAGCTGTTTAACGAGCGCTG 59.906 55.000 18.48 10.31 40.34 5.18
387 400 1.509995 GCTGTTTAACGAGCGCTGC 60.510 57.895 18.48 4.32 0.00 5.25
388 401 1.132640 CTGTTTAACGAGCGCTGCC 59.867 57.895 18.48 0.00 0.00 4.85
389 402 2.240612 CTGTTTAACGAGCGCTGCCC 62.241 60.000 18.48 0.00 0.00 5.36
390 403 2.744709 TTTAACGAGCGCTGCCCC 60.745 61.111 18.48 0.00 0.00 5.80
391 404 3.248446 TTTAACGAGCGCTGCCCCT 62.248 57.895 18.48 0.00 0.00 4.79
392 405 2.741486 TTTAACGAGCGCTGCCCCTT 62.741 55.000 18.48 0.00 0.00 3.95
393 406 2.741486 TTAACGAGCGCTGCCCCTTT 62.741 55.000 18.48 2.20 0.00 3.11
394 407 2.741486 TAACGAGCGCTGCCCCTTTT 62.741 55.000 18.48 0.00 0.00 2.27
395 408 3.804193 CGAGCGCTGCCCCTTTTC 61.804 66.667 18.48 0.00 0.00 2.29
396 409 2.360475 GAGCGCTGCCCCTTTTCT 60.360 61.111 18.48 0.00 0.00 2.52
397 410 1.973812 GAGCGCTGCCCCTTTTCTT 60.974 57.895 18.48 0.00 0.00 2.52
398 411 1.927608 GAGCGCTGCCCCTTTTCTTC 61.928 60.000 18.48 0.00 0.00 2.87
399 412 1.973812 GCGCTGCCCCTTTTCTTCT 60.974 57.895 0.00 0.00 0.00 2.85
400 413 0.676782 GCGCTGCCCCTTTTCTTCTA 60.677 55.000 0.00 0.00 0.00 2.10
401 414 1.087501 CGCTGCCCCTTTTCTTCTAC 58.912 55.000 0.00 0.00 0.00 2.59
402 415 1.087501 GCTGCCCCTTTTCTTCTACG 58.912 55.000 0.00 0.00 0.00 3.51
403 416 1.338769 GCTGCCCCTTTTCTTCTACGA 60.339 52.381 0.00 0.00 0.00 3.43
404 417 2.622436 CTGCCCCTTTTCTTCTACGAG 58.378 52.381 0.00 0.00 0.00 4.18
405 418 2.233922 CTGCCCCTTTTCTTCTACGAGA 59.766 50.000 0.00 0.00 0.00 4.04
406 419 2.635915 TGCCCCTTTTCTTCTACGAGAA 59.364 45.455 0.00 0.00 34.00 2.87
407 420 3.071892 TGCCCCTTTTCTTCTACGAGAAA 59.928 43.478 0.00 0.00 42.28 2.52
408 421 3.436015 GCCCCTTTTCTTCTACGAGAAAC 59.564 47.826 0.00 0.00 43.32 2.78
409 422 4.001652 CCCCTTTTCTTCTACGAGAAACC 58.998 47.826 0.00 0.00 43.32 3.27
410 423 4.001652 CCCTTTTCTTCTACGAGAAACCC 58.998 47.826 0.00 0.00 43.32 4.11
411 424 4.504340 CCCTTTTCTTCTACGAGAAACCCA 60.504 45.833 0.00 0.00 43.32 4.51
412 425 5.246307 CCTTTTCTTCTACGAGAAACCCAT 58.754 41.667 0.00 0.00 43.32 4.00
413 426 5.705905 CCTTTTCTTCTACGAGAAACCCATT 59.294 40.000 0.00 0.00 43.32 3.16
414 427 6.348540 CCTTTTCTTCTACGAGAAACCCATTG 60.349 42.308 0.00 0.00 43.32 2.82
415 428 3.596214 TCTTCTACGAGAAACCCATTGC 58.404 45.455 0.00 0.00 33.19 3.56
416 429 3.007506 TCTTCTACGAGAAACCCATTGCA 59.992 43.478 0.00 0.00 33.19 4.08
417 430 3.627395 TCTACGAGAAACCCATTGCAT 57.373 42.857 0.00 0.00 0.00 3.96
418 431 3.950397 TCTACGAGAAACCCATTGCATT 58.050 40.909 0.00 0.00 0.00 3.56
419 432 5.092554 TCTACGAGAAACCCATTGCATTA 57.907 39.130 0.00 0.00 0.00 1.90
420 433 5.116180 TCTACGAGAAACCCATTGCATTAG 58.884 41.667 0.00 0.00 0.00 1.73
421 434 2.423538 ACGAGAAACCCATTGCATTAGC 59.576 45.455 0.00 0.00 42.57 3.09
422 435 2.539547 CGAGAAACCCATTGCATTAGCG 60.540 50.000 0.00 0.00 46.23 4.26
423 436 1.134946 AGAAACCCATTGCATTAGCGC 59.865 47.619 0.00 0.00 46.23 5.92
424 437 1.134946 GAAACCCATTGCATTAGCGCT 59.865 47.619 17.26 17.26 46.23 5.92
425 438 0.740737 AACCCATTGCATTAGCGCTC 59.259 50.000 16.34 0.00 46.23 5.03
426 439 1.280746 CCCATTGCATTAGCGCTCG 59.719 57.895 16.34 4.86 46.23 5.03
427 440 1.159713 CCCATTGCATTAGCGCTCGA 61.160 55.000 16.34 4.02 46.23 4.04
428 441 0.041839 CCATTGCATTAGCGCTCGAC 60.042 55.000 16.34 2.39 46.23 4.20
429 442 0.041839 CATTGCATTAGCGCTCGACC 60.042 55.000 16.34 1.55 46.23 4.79
430 443 0.461870 ATTGCATTAGCGCTCGACCA 60.462 50.000 16.34 4.72 46.23 4.02
431 444 1.083806 TTGCATTAGCGCTCGACCAG 61.084 55.000 16.34 0.00 46.23 4.00
432 445 2.240500 GCATTAGCGCTCGACCAGG 61.241 63.158 16.34 0.00 0.00 4.45
433 446 2.107141 ATTAGCGCTCGACCAGGC 59.893 61.111 16.34 0.00 0.00 4.85
451 464 2.268920 GCCCATGCGTTGAGGAGA 59.731 61.111 0.00 0.00 0.00 3.71
452 465 2.109126 GCCCATGCGTTGAGGAGAC 61.109 63.158 0.00 0.00 0.00 3.36
453 466 1.811266 CCCATGCGTTGAGGAGACG 60.811 63.158 0.00 0.00 43.04 4.18
454 467 1.811266 CCATGCGTTGAGGAGACGG 60.811 63.158 0.00 0.00 40.66 4.79
455 468 1.215382 CATGCGTTGAGGAGACGGA 59.785 57.895 0.00 0.00 44.62 4.69
456 469 1.078759 CATGCGTTGAGGAGACGGAC 61.079 60.000 0.00 0.00 43.38 4.79
457 470 1.251527 ATGCGTTGAGGAGACGGACT 61.252 55.000 0.00 0.00 43.38 3.85
458 471 1.153997 GCGTTGAGGAGACGGACTC 60.154 63.158 0.00 0.00 44.24 3.36
466 479 1.722677 GAGACGGACTCCTACAGCG 59.277 63.158 0.00 0.00 39.53 5.18
467 480 0.743701 GAGACGGACTCCTACAGCGA 60.744 60.000 0.00 0.00 39.53 4.93
468 481 1.025647 AGACGGACTCCTACAGCGAC 61.026 60.000 0.00 0.00 0.00 5.19
469 482 2.307137 GACGGACTCCTACAGCGACG 62.307 65.000 0.00 0.00 0.00 5.12
470 483 2.102553 GGACTCCTACAGCGACGC 59.897 66.667 13.03 13.03 0.00 5.19
471 484 2.102553 GACTCCTACAGCGACGCC 59.897 66.667 17.79 0.00 0.00 5.68
472 485 2.675423 ACTCCTACAGCGACGCCA 60.675 61.111 17.79 0.76 0.00 5.69
473 486 2.202623 CTCCTACAGCGACGCCAC 60.203 66.667 17.79 0.00 0.00 5.01
474 487 2.675423 TCCTACAGCGACGCCACT 60.675 61.111 17.79 1.09 0.00 4.00
475 488 2.214181 CTCCTACAGCGACGCCACTT 62.214 60.000 17.79 0.43 0.00 3.16
476 489 1.805945 CCTACAGCGACGCCACTTC 60.806 63.158 17.79 0.00 0.00 3.01
477 490 1.213013 CTACAGCGACGCCACTTCT 59.787 57.895 17.79 0.00 0.00 2.85
478 491 0.388649 CTACAGCGACGCCACTTCTT 60.389 55.000 17.79 0.00 0.00 2.52
479 492 0.032952 TACAGCGACGCCACTTCTTT 59.967 50.000 17.79 0.00 0.00 2.52
480 493 0.032952 ACAGCGACGCCACTTCTTTA 59.967 50.000 17.79 0.00 0.00 1.85
481 494 1.144969 CAGCGACGCCACTTCTTTAA 58.855 50.000 17.79 0.00 0.00 1.52
482 495 1.732259 CAGCGACGCCACTTCTTTAAT 59.268 47.619 17.79 0.00 0.00 1.40
483 496 2.159627 CAGCGACGCCACTTCTTTAATT 59.840 45.455 17.79 0.00 0.00 1.40
484 497 3.369756 CAGCGACGCCACTTCTTTAATTA 59.630 43.478 17.79 0.00 0.00 1.40
485 498 3.998341 AGCGACGCCACTTCTTTAATTAA 59.002 39.130 17.79 0.00 0.00 1.40
486 499 4.634443 AGCGACGCCACTTCTTTAATTAAT 59.366 37.500 17.79 0.00 0.00 1.40
487 500 5.123344 AGCGACGCCACTTCTTTAATTAATT 59.877 36.000 17.79 5.89 0.00 1.40
488 501 5.798434 GCGACGCCACTTCTTTAATTAATTT 59.202 36.000 9.14 0.00 0.00 1.82
489 502 6.307077 GCGACGCCACTTCTTTAATTAATTTT 59.693 34.615 9.14 0.00 0.00 1.82
490 503 7.148869 GCGACGCCACTTCTTTAATTAATTTTT 60.149 33.333 9.14 0.00 0.00 1.94
510 523 5.455056 TTTTTATTGCCTAAGCGTCCAAA 57.545 34.783 0.00 0.00 44.31 3.28
511 524 5.652994 TTTTATTGCCTAAGCGTCCAAAT 57.347 34.783 0.00 0.00 44.31 2.32
512 525 6.761099 TTTTATTGCCTAAGCGTCCAAATA 57.239 33.333 0.00 0.00 44.31 1.40
513 526 6.761099 TTTATTGCCTAAGCGTCCAAATAA 57.239 33.333 0.00 0.00 44.31 1.40
514 527 4.900635 ATTGCCTAAGCGTCCAAATAAG 57.099 40.909 0.00 0.00 44.31 1.73
515 528 2.014128 TGCCTAAGCGTCCAAATAAGC 58.986 47.619 0.00 0.00 44.31 3.09
516 529 1.003866 GCCTAAGCGTCCAAATAAGCG 60.004 52.381 0.00 0.00 34.34 4.68
519 532 4.976619 GCGTCCAAATAAGCGCTC 57.023 55.556 12.06 0.00 45.48 5.03
520 533 2.384203 GCGTCCAAATAAGCGCTCT 58.616 52.632 12.06 3.55 45.48 4.09
521 534 0.727398 GCGTCCAAATAAGCGCTCTT 59.273 50.000 12.06 4.60 45.48 2.85
522 535 1.529826 GCGTCCAAATAAGCGCTCTTG 60.530 52.381 12.06 14.73 45.48 3.02
523 536 1.529826 CGTCCAAATAAGCGCTCTTGC 60.530 52.381 12.06 2.73 33.85 4.01
524 537 1.468520 GTCCAAATAAGCGCTCTTGCA 59.531 47.619 12.06 0.00 39.64 4.08
525 538 2.098117 GTCCAAATAAGCGCTCTTGCAT 59.902 45.455 12.06 0.00 39.64 3.96
526 539 2.754552 TCCAAATAAGCGCTCTTGCATT 59.245 40.909 12.06 2.79 39.64 3.56
527 540 2.855963 CCAAATAAGCGCTCTTGCATTG 59.144 45.455 12.06 10.52 39.64 2.82
528 541 3.504863 CAAATAAGCGCTCTTGCATTGT 58.495 40.909 12.06 0.00 39.64 2.71
529 542 4.438608 CCAAATAAGCGCTCTTGCATTGTA 60.439 41.667 12.06 0.00 39.64 2.41
530 543 4.542662 AATAAGCGCTCTTGCATTGTAG 57.457 40.909 12.06 0.00 39.64 2.74
531 544 2.099141 AAGCGCTCTTGCATTGTAGA 57.901 45.000 12.06 0.00 39.64 2.59
532 545 2.322355 AGCGCTCTTGCATTGTAGAT 57.678 45.000 2.64 0.00 39.64 1.98
533 546 1.938577 AGCGCTCTTGCATTGTAGATG 59.061 47.619 2.64 0.00 39.64 2.90
534 547 1.596464 GCGCTCTTGCATTGTAGATGC 60.596 52.381 0.00 4.14 44.76 3.91
535 548 1.003116 CGCTCTTGCATTGTAGATGCC 60.003 52.381 8.36 0.00 43.94 4.40
536 549 1.336125 GCTCTTGCATTGTAGATGCCC 59.664 52.381 8.36 0.00 43.94 5.36
666 689 1.267261 ACTCTTCAGTCTTCACCGACG 59.733 52.381 0.00 0.00 38.90 5.12
667 690 1.535896 CTCTTCAGTCTTCACCGACGA 59.464 52.381 0.00 0.00 38.90 4.20
668 691 1.535896 TCTTCAGTCTTCACCGACGAG 59.464 52.381 0.00 0.00 38.90 4.18
669 692 1.535896 CTTCAGTCTTCACCGACGAGA 59.464 52.381 0.00 0.00 38.90 4.04
670 693 1.157585 TCAGTCTTCACCGACGAGAG 58.842 55.000 0.00 0.00 38.90 3.20
671 694 0.455295 CAGTCTTCACCGACGAGAGC 60.455 60.000 0.00 0.00 38.90 4.09
672 695 0.606944 AGTCTTCACCGACGAGAGCT 60.607 55.000 0.00 0.00 38.90 4.09
673 696 0.241481 GTCTTCACCGACGAGAGCTT 59.759 55.000 0.00 0.00 0.00 3.74
674 697 0.241213 TCTTCACCGACGAGAGCTTG 59.759 55.000 0.00 0.00 0.00 4.01
675 698 0.241213 CTTCACCGACGAGAGCTTGA 59.759 55.000 0.00 0.00 0.00 3.02
676 699 0.241213 TTCACCGACGAGAGCTTGAG 59.759 55.000 0.00 0.00 0.00 3.02
677 700 1.803519 CACCGACGAGAGCTTGAGC 60.804 63.158 0.00 0.00 42.49 4.26
678 701 2.202676 CCGACGAGAGCTTGAGCC 60.203 66.667 0.00 0.00 43.38 4.70
679 702 2.202676 CGACGAGAGCTTGAGCCC 60.203 66.667 0.00 0.00 43.38 5.19
680 703 2.705821 CGACGAGAGCTTGAGCCCT 61.706 63.158 0.00 0.00 43.38 5.19
681 704 1.140804 GACGAGAGCTTGAGCCCTC 59.859 63.158 4.60 4.60 41.72 4.30
682 705 1.304879 ACGAGAGCTTGAGCCCTCT 60.305 57.895 11.88 4.05 42.78 3.69
694 717 2.678934 CCCTCTCCCGACGTCCAA 60.679 66.667 10.58 0.00 0.00 3.53
787 810 0.165944 CGACTCGGATTGTTTGGTGC 59.834 55.000 0.00 0.00 0.00 5.01
803 826 2.202650 GCGGTGGTGCGTACGTAT 60.203 61.111 17.90 0.00 0.00 3.06
808 831 1.226463 TGGTGCGTACGTATGAGCG 60.226 57.895 18.93 8.88 37.94 5.03
884 909 7.501225 TCCGTCTGACATACTCATTTGATACTA 59.499 37.037 8.73 0.00 0.00 1.82
885 910 7.591795 CCGTCTGACATACTCATTTGATACTAC 59.408 40.741 8.73 0.00 0.00 2.73
886 911 7.321509 CGTCTGACATACTCATTTGATACTACG 59.678 40.741 8.73 0.00 0.00 3.51
887 912 8.129840 GTCTGACATACTCATTTGATACTACGT 58.870 37.037 2.24 0.00 0.00 3.57
907 937 9.451002 ACTACGTACTACTCTATATAGTACCGA 57.549 37.037 9.58 4.58 46.60 4.69
947 981 2.073252 AGATCGATCTACCAGCACCA 57.927 50.000 26.27 0.00 34.85 4.17
963 997 0.041238 ACCAACAGATCGAGGGGAGA 59.959 55.000 0.00 0.00 0.00 3.71
964 998 1.195115 CCAACAGATCGAGGGGAGAA 58.805 55.000 0.00 0.00 0.00 2.87
965 999 1.137872 CCAACAGATCGAGGGGAGAAG 59.862 57.143 0.00 0.00 0.00 2.85
966 1000 2.103373 CAACAGATCGAGGGGAGAAGA 58.897 52.381 0.00 0.00 0.00 2.87
967 1001 2.065899 ACAGATCGAGGGGAGAAGAG 57.934 55.000 0.00 0.00 0.00 2.85
968 1002 1.327303 CAGATCGAGGGGAGAAGAGG 58.673 60.000 0.00 0.00 0.00 3.69
969 1003 0.469144 AGATCGAGGGGAGAAGAGGC 60.469 60.000 0.00 0.00 0.00 4.70
970 1004 1.801309 GATCGAGGGGAGAAGAGGCG 61.801 65.000 0.00 0.00 0.00 5.52
979 1013 0.179184 GAGAAGAGGCGTCACGAGAC 60.179 60.000 0.00 2.56 41.46 3.36
1117 1157 0.694771 AGGCTTCAGCATCCACAAGA 59.305 50.000 0.30 0.00 44.36 3.02
1284 1330 3.312421 TCTTCTTCGCCAACAAGAAACAG 59.688 43.478 0.00 0.00 38.98 3.16
1293 1339 1.704641 ACAAGAAACAGCTTTCCCCC 58.295 50.000 0.00 0.00 37.12 5.40
1296 1342 1.704641 AGAAACAGCTTTCCCCCAAC 58.295 50.000 0.00 0.00 37.12 3.77
1299 1345 2.597217 CAGCTTTCCCCCAACGCA 60.597 61.111 0.00 0.00 31.50 5.24
1464 1526 1.515736 GTACACGCTAGACCACGGC 60.516 63.158 0.00 0.00 0.00 5.68
1476 1538 2.480555 CACGGCGGCAGATCAAAC 59.519 61.111 13.24 0.00 0.00 2.93
1642 1704 0.883833 GGAAACCGTCGTCTCCTACA 59.116 55.000 0.00 0.00 0.00 2.74
1677 1739 0.861837 GGCGCACCATATTCTTCTCG 59.138 55.000 10.83 0.00 35.26 4.04
1692 1754 4.361971 TCGACGAGAGGCAGGGGT 62.362 66.667 0.00 0.00 41.50 4.95
1696 1758 4.101448 CGAGAGGCAGGGGTTGGG 62.101 72.222 0.00 0.00 0.00 4.12
1697 1759 2.936032 GAGAGGCAGGGGTTGGGT 60.936 66.667 0.00 0.00 0.00 4.51
1730 1792 3.862124 CTCCTTTGACACGGAGCG 58.138 61.111 6.97 0.00 40.27 5.03
1791 1853 0.747283 ACGGTCAGGGCTACTACGAG 60.747 60.000 0.00 0.00 0.00 4.18
1898 1966 1.228894 AGTGGAGGAAGACGGAGCA 60.229 57.895 0.00 0.00 0.00 4.26
1899 1967 1.216710 GTGGAGGAAGACGGAGCAG 59.783 63.158 0.00 0.00 0.00 4.24
2194 2265 5.511363 TGTAGAAGAAGAGCTAGCTAGGTT 58.489 41.667 25.38 11.72 33.58 3.50
2206 2277 5.480073 AGCTAGCTAGGTTGAAGATGGATAG 59.520 44.000 17.69 0.00 0.00 2.08
2207 2278 5.245075 GCTAGCTAGGTTGAAGATGGATAGT 59.755 44.000 22.10 0.00 0.00 2.12
2208 2279 6.434652 GCTAGCTAGGTTGAAGATGGATAGTA 59.565 42.308 22.10 0.00 0.00 1.82
2210 2281 7.296628 AGCTAGGTTGAAGATGGATAGTAAG 57.703 40.000 0.00 0.00 0.00 2.34
2212 2283 5.957771 AGGTTGAAGATGGATAGTAAGCA 57.042 39.130 0.00 0.00 0.00 3.91
2213 2284 5.923204 AGGTTGAAGATGGATAGTAAGCAG 58.077 41.667 0.00 0.00 0.00 4.24
2214 2285 5.663106 AGGTTGAAGATGGATAGTAAGCAGA 59.337 40.000 0.00 0.00 0.00 4.26
2215 2286 6.328672 AGGTTGAAGATGGATAGTAAGCAGAT 59.671 38.462 0.00 0.00 0.00 2.90
2217 2288 8.150945 GGTTGAAGATGGATAGTAAGCAGATAA 58.849 37.037 0.00 0.00 0.00 1.75
2218 2289 9.717942 GTTGAAGATGGATAGTAAGCAGATAAT 57.282 33.333 0.00 0.00 0.00 1.28
2226 2297 9.219603 TGGATAGTAAGCAGATAATATTGTTGC 57.780 33.333 10.78 10.78 35.09 4.17
2227 2298 8.669243 GGATAGTAAGCAGATAATATTGTTGCC 58.331 37.037 13.62 3.64 35.44 4.52
2228 2299 6.884280 AGTAAGCAGATAATATTGTTGCCC 57.116 37.500 13.62 6.06 35.44 5.36
2229 2300 6.605119 AGTAAGCAGATAATATTGTTGCCCT 58.395 36.000 13.62 7.58 35.44 5.19
2233 2304 4.022849 GCAGATAATATTGTTGCCCTGTCC 60.023 45.833 0.00 0.00 0.00 4.02
2471 2567 1.299541 CTCACAAAGAGCCACAACGT 58.700 50.000 0.00 0.00 37.59 3.99
2608 2704 2.365105 TCCCACCGGACAGATCCC 60.365 66.667 9.46 0.00 42.83 3.85
2610 2706 4.530857 CCACCGGACAGATCCCGC 62.531 72.222 9.46 0.00 45.24 6.13
2611 2707 4.873129 CACCGGACAGATCCCGCG 62.873 72.222 9.46 0.00 45.24 6.46
2614 2710 3.592814 CGGACAGATCCCGCGCTA 61.593 66.667 5.56 0.00 42.83 4.26
2615 2711 2.027751 GGACAGATCCCGCGCTAC 59.972 66.667 5.56 0.00 39.39 3.58
2616 2712 2.027751 GACAGATCCCGCGCTACC 59.972 66.667 5.56 0.00 0.00 3.18
2618 2714 2.088674 GACAGATCCCGCGCTACCAT 62.089 60.000 5.56 0.00 0.00 3.55
2619 2715 1.373497 CAGATCCCGCGCTACCATC 60.373 63.158 5.56 1.46 0.00 3.51
2620 2716 1.531840 AGATCCCGCGCTACCATCT 60.532 57.895 5.56 3.99 0.00 2.90
2621 2717 1.080434 GATCCCGCGCTACCATCTC 60.080 63.158 5.56 0.00 0.00 2.75
3063 3195 8.478877 ACTAAGGAATGACACTAGAGTTAATGG 58.521 37.037 0.00 0.00 0.00 3.16
3065 3197 4.508124 GGAATGACACTAGAGTTAATGGCG 59.492 45.833 0.00 0.00 0.00 5.69
3098 3230 4.142790 TCGACTTAACTGTGAACTCTCCT 58.857 43.478 0.00 0.00 0.00 3.69
3129 3261 1.640428 CTTCCAGCGCAACTAATCGA 58.360 50.000 11.47 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.005198 ACCAAACAAATCATAGGTTAACCGA 58.995 36.000 18.91 14.62 42.08 4.69
44 45 6.262193 ACCAAACAAATCATAGGTTAACCG 57.738 37.500 18.91 5.35 42.08 4.44
131 142 7.377662 GGTATTTACTGAAAAACGGACAAACTG 59.622 37.037 0.00 0.00 0.00 3.16
181 194 7.178451 TCTCTCTGGTTTTGATTTTTATTCCCC 59.822 37.037 0.00 0.00 0.00 4.81
225 238 4.514569 CGCCGGCGTTGTACATGC 62.515 66.667 39.71 11.15 36.56 4.06
226 239 4.514569 GCGCCGGCGTTGTACATG 62.515 66.667 45.02 18.85 42.09 3.21
227 240 2.839043 TTAGCGCCGGCGTTGTACAT 62.839 55.000 45.02 25.33 46.35 2.29
228 241 2.839043 ATTAGCGCCGGCGTTGTACA 62.839 55.000 45.02 25.43 46.35 2.90
229 242 2.169146 ATTAGCGCCGGCGTTGTAC 61.169 57.895 45.02 30.10 46.35 2.90
230 243 2.168503 CATTAGCGCCGGCGTTGTA 61.169 57.895 45.02 32.13 46.35 2.41
231 244 3.496131 CATTAGCGCCGGCGTTGT 61.496 61.111 45.02 32.39 46.35 3.32
232 245 3.192230 TCATTAGCGCCGGCGTTG 61.192 61.111 45.02 34.28 46.35 4.10
233 246 3.192922 GTCATTAGCGCCGGCGTT 61.193 61.111 45.02 42.11 46.35 4.84
234 247 4.444838 TGTCATTAGCGCCGGCGT 62.445 61.111 45.02 33.46 46.35 5.68
235 248 3.630148 CTGTCATTAGCGCCGGCG 61.630 66.667 43.13 43.13 46.35 6.46
236 249 3.272334 CCTGTCATTAGCGCCGGC 61.272 66.667 19.07 19.07 40.37 6.13
237 250 3.272334 GCCTGTCATTAGCGCCGG 61.272 66.667 2.29 0.00 0.00 6.13
238 251 3.630148 CGCCTGTCATTAGCGCCG 61.630 66.667 2.29 0.00 43.72 6.46
242 255 0.389391 TCCTAGCGCCTGTCATTAGC 59.611 55.000 2.29 0.00 0.00 3.09
243 256 3.243873 TGAATCCTAGCGCCTGTCATTAG 60.244 47.826 2.29 0.00 0.00 1.73
244 257 2.698274 TGAATCCTAGCGCCTGTCATTA 59.302 45.455 2.29 0.00 0.00 1.90
245 258 1.486310 TGAATCCTAGCGCCTGTCATT 59.514 47.619 2.29 0.00 0.00 2.57
246 259 1.123077 TGAATCCTAGCGCCTGTCAT 58.877 50.000 2.29 0.00 0.00 3.06
247 260 0.175760 GTGAATCCTAGCGCCTGTCA 59.824 55.000 2.29 0.00 0.00 3.58
248 261 0.461961 AGTGAATCCTAGCGCCTGTC 59.538 55.000 2.29 0.00 0.00 3.51
249 262 0.905357 AAGTGAATCCTAGCGCCTGT 59.095 50.000 2.29 0.00 0.00 4.00
250 263 1.576356 GAAGTGAATCCTAGCGCCTG 58.424 55.000 2.29 0.00 0.00 4.85
251 264 0.466124 GGAAGTGAATCCTAGCGCCT 59.534 55.000 2.29 0.00 36.50 5.52
252 265 2.993539 GGAAGTGAATCCTAGCGCC 58.006 57.895 2.29 0.00 36.50 6.53
259 272 0.322546 AACGGCCAGGAAGTGAATCC 60.323 55.000 2.24 0.00 39.96 3.01
260 273 2.396590 TAACGGCCAGGAAGTGAATC 57.603 50.000 2.24 0.00 0.00 2.52
261 274 2.643551 CATAACGGCCAGGAAGTGAAT 58.356 47.619 2.24 0.00 0.00 2.57
262 275 1.339631 CCATAACGGCCAGGAAGTGAA 60.340 52.381 2.24 0.00 0.00 3.18
263 276 0.251916 CCATAACGGCCAGGAAGTGA 59.748 55.000 2.24 0.00 0.00 3.41
264 277 0.035439 ACCATAACGGCCAGGAAGTG 60.035 55.000 2.24 0.00 39.03 3.16
265 278 0.252197 GACCATAACGGCCAGGAAGT 59.748 55.000 2.24 0.00 39.03 3.01
266 279 0.541863 AGACCATAACGGCCAGGAAG 59.458 55.000 2.24 0.00 39.03 3.46
267 280 1.868713 TAGACCATAACGGCCAGGAA 58.131 50.000 2.24 0.00 39.03 3.36
268 281 1.868713 TTAGACCATAACGGCCAGGA 58.131 50.000 2.24 0.00 39.03 3.86
269 282 2.550208 GGATTAGACCATAACGGCCAGG 60.550 54.545 2.24 0.00 39.03 4.45
270 283 2.368875 AGGATTAGACCATAACGGCCAG 59.631 50.000 2.24 0.00 39.03 4.85
271 284 2.104111 CAGGATTAGACCATAACGGCCA 59.896 50.000 2.24 0.00 39.03 5.36
272 285 2.550208 CCAGGATTAGACCATAACGGCC 60.550 54.545 0.00 0.00 39.03 6.13
273 286 2.104281 ACCAGGATTAGACCATAACGGC 59.896 50.000 0.00 0.00 39.03 5.68
274 287 4.127171 CAACCAGGATTAGACCATAACGG 58.873 47.826 0.00 0.00 42.50 4.44
275 288 5.018539 TCAACCAGGATTAGACCATAACG 57.981 43.478 0.00 0.00 0.00 3.18
276 289 5.998363 GGATCAACCAGGATTAGACCATAAC 59.002 44.000 0.00 0.00 38.79 1.89
277 290 5.073144 GGGATCAACCAGGATTAGACCATAA 59.927 44.000 0.00 0.00 41.20 1.90
278 291 4.597507 GGGATCAACCAGGATTAGACCATA 59.402 45.833 0.00 0.00 41.20 2.74
279 292 3.395941 GGGATCAACCAGGATTAGACCAT 59.604 47.826 0.00 0.00 41.20 3.55
280 293 2.777692 GGGATCAACCAGGATTAGACCA 59.222 50.000 0.00 0.00 41.20 4.02
281 294 2.777692 TGGGATCAACCAGGATTAGACC 59.222 50.000 0.00 0.00 41.20 3.85
291 304 3.205056 AGCAATAATCCTGGGATCAACCA 59.795 43.478 2.31 0.00 41.20 3.67
292 305 3.837355 AGCAATAATCCTGGGATCAACC 58.163 45.455 2.31 0.00 33.08 3.77
293 306 4.457257 GCTAGCAATAATCCTGGGATCAAC 59.543 45.833 10.63 0.00 33.08 3.18
294 307 4.655963 GCTAGCAATAATCCTGGGATCAA 58.344 43.478 10.63 0.00 33.08 2.57
295 308 3.306989 CGCTAGCAATAATCCTGGGATCA 60.307 47.826 16.45 0.00 33.08 2.92
296 309 3.265791 CGCTAGCAATAATCCTGGGATC 58.734 50.000 16.45 0.00 33.08 3.36
297 310 2.639839 ACGCTAGCAATAATCCTGGGAT 59.360 45.455 16.45 0.00 36.23 3.85
298 311 2.037251 GACGCTAGCAATAATCCTGGGA 59.963 50.000 16.45 0.00 0.00 4.37
299 312 2.417719 GACGCTAGCAATAATCCTGGG 58.582 52.381 16.45 0.00 0.00 4.45
300 313 2.061773 CGACGCTAGCAATAATCCTGG 58.938 52.381 16.45 0.00 0.00 4.45
301 314 3.013276 TCGACGCTAGCAATAATCCTG 57.987 47.619 16.45 0.00 0.00 3.86
302 315 3.579709 CATCGACGCTAGCAATAATCCT 58.420 45.455 16.45 0.00 0.00 3.24
303 316 2.092838 GCATCGACGCTAGCAATAATCC 59.907 50.000 16.45 0.00 0.00 3.01
304 317 2.092838 GGCATCGACGCTAGCAATAATC 59.907 50.000 16.45 2.90 0.00 1.75
305 318 2.069273 GGCATCGACGCTAGCAATAAT 58.931 47.619 16.45 0.00 0.00 1.28
306 319 1.202475 TGGCATCGACGCTAGCAATAA 60.202 47.619 16.45 0.00 0.00 1.40
307 320 0.387565 TGGCATCGACGCTAGCAATA 59.612 50.000 16.45 0.00 0.00 1.90
308 321 0.877649 CTGGCATCGACGCTAGCAAT 60.878 55.000 16.45 1.06 33.48 3.56
309 322 1.519234 CTGGCATCGACGCTAGCAA 60.519 57.895 16.45 0.00 33.48 3.91
310 323 2.104928 CTGGCATCGACGCTAGCA 59.895 61.111 16.45 0.00 33.48 3.49
311 324 2.659897 CCTGGCATCGACGCTAGC 60.660 66.667 11.67 4.06 39.04 3.42
312 325 2.028190 CCCTGGCATCGACGCTAG 59.972 66.667 10.11 10.11 39.99 3.42
313 326 4.221422 GCCCTGGCATCGACGCTA 62.221 66.667 2.49 0.00 41.49 4.26
333 346 3.564027 GAACGAAGCGCCCGATGG 61.564 66.667 23.57 3.95 0.00 3.51
334 347 1.635663 AAAGAACGAAGCGCCCGATG 61.636 55.000 23.57 4.14 0.00 3.84
335 348 0.953960 AAAAGAACGAAGCGCCCGAT 60.954 50.000 23.57 13.71 0.00 4.18
336 349 1.161563 AAAAAGAACGAAGCGCCCGA 61.162 50.000 23.57 0.00 0.00 5.14
337 350 1.281656 AAAAAGAACGAAGCGCCCG 59.718 52.632 16.67 16.67 0.00 6.13
353 366 7.480810 GTTAAACAGCTCAGAGGAAAGAAAAA 58.519 34.615 0.00 0.00 0.00 1.94
354 367 6.238374 CGTTAAACAGCTCAGAGGAAAGAAAA 60.238 38.462 0.00 0.00 0.00 2.29
355 368 5.236478 CGTTAAACAGCTCAGAGGAAAGAAA 59.764 40.000 0.00 0.00 0.00 2.52
356 369 4.750098 CGTTAAACAGCTCAGAGGAAAGAA 59.250 41.667 0.00 0.00 0.00 2.52
357 370 4.038763 TCGTTAAACAGCTCAGAGGAAAGA 59.961 41.667 0.00 0.00 0.00 2.52
358 371 4.307432 TCGTTAAACAGCTCAGAGGAAAG 58.693 43.478 0.00 0.00 0.00 2.62
359 372 4.307432 CTCGTTAAACAGCTCAGAGGAAA 58.693 43.478 0.00 0.00 0.00 3.13
360 373 3.861131 GCTCGTTAAACAGCTCAGAGGAA 60.861 47.826 0.00 0.00 32.48 3.36
361 374 2.352814 GCTCGTTAAACAGCTCAGAGGA 60.353 50.000 0.00 0.00 32.48 3.71
362 375 1.996191 GCTCGTTAAACAGCTCAGAGG 59.004 52.381 0.00 0.00 32.48 3.69
363 376 1.651138 CGCTCGTTAAACAGCTCAGAG 59.349 52.381 0.00 0.00 33.09 3.35
364 377 1.698165 CGCTCGTTAAACAGCTCAGA 58.302 50.000 5.58 0.00 33.09 3.27
365 378 0.093705 GCGCTCGTTAAACAGCTCAG 59.906 55.000 0.00 0.00 33.09 3.35
366 379 0.319555 AGCGCTCGTTAAACAGCTCA 60.320 50.000 2.64 0.00 33.09 4.26
367 380 0.093705 CAGCGCTCGTTAAACAGCTC 59.906 55.000 7.13 0.00 33.09 4.09
368 381 1.901650 GCAGCGCTCGTTAAACAGCT 61.902 55.000 7.13 0.00 33.09 4.24
369 382 1.509995 GCAGCGCTCGTTAAACAGC 60.510 57.895 7.13 0.00 0.00 4.40
370 383 1.132640 GGCAGCGCTCGTTAAACAG 59.867 57.895 7.13 0.00 0.00 3.16
371 384 2.322081 GGGCAGCGCTCGTTAAACA 61.322 57.895 7.13 0.00 0.00 2.83
372 385 2.479198 GGGCAGCGCTCGTTAAAC 59.521 61.111 7.13 0.00 0.00 2.01
373 386 2.741486 AAGGGGCAGCGCTCGTTAAA 62.741 55.000 7.13 0.00 35.27 1.52
374 387 2.741486 AAAGGGGCAGCGCTCGTTAA 62.741 55.000 7.13 0.00 36.03 2.01
375 388 2.741486 AAAAGGGGCAGCGCTCGTTA 62.741 55.000 7.13 0.00 36.03 3.18
376 389 4.643387 AAAGGGGCAGCGCTCGTT 62.643 61.111 7.13 1.04 38.85 3.85
377 390 4.643387 AAAAGGGGCAGCGCTCGT 62.643 61.111 7.13 0.00 0.00 4.18
378 391 3.804193 GAAAAGGGGCAGCGCTCG 61.804 66.667 7.13 4.46 0.00 5.03
379 392 1.927608 GAAGAAAAGGGGCAGCGCTC 61.928 60.000 7.13 2.01 0.00 5.03
380 393 1.973812 GAAGAAAAGGGGCAGCGCT 60.974 57.895 2.64 2.64 0.00 5.92
381 394 0.676782 TAGAAGAAAAGGGGCAGCGC 60.677 55.000 0.00 0.00 0.00 5.92
382 395 1.087501 GTAGAAGAAAAGGGGCAGCG 58.912 55.000 0.00 0.00 0.00 5.18
383 396 1.087501 CGTAGAAGAAAAGGGGCAGC 58.912 55.000 0.00 0.00 0.00 5.25
384 397 2.233922 TCTCGTAGAAGAAAAGGGGCAG 59.766 50.000 0.00 0.00 34.09 4.85
385 398 2.253610 TCTCGTAGAAGAAAAGGGGCA 58.746 47.619 0.00 0.00 34.09 5.36
386 399 3.329929 TTCTCGTAGAAGAAAAGGGGC 57.670 47.619 0.00 0.00 34.09 5.80
387 400 4.001652 GGTTTCTCGTAGAAGAAAAGGGG 58.998 47.826 0.95 0.00 36.20 4.79
388 401 4.001652 GGGTTTCTCGTAGAAGAAAAGGG 58.998 47.826 0.95 0.00 36.20 3.95
389 402 4.638304 TGGGTTTCTCGTAGAAGAAAAGG 58.362 43.478 0.95 0.00 36.20 3.11
390 403 6.603095 CAATGGGTTTCTCGTAGAAGAAAAG 58.397 40.000 0.95 0.00 36.20 2.27
391 404 5.048991 GCAATGGGTTTCTCGTAGAAGAAAA 60.049 40.000 0.95 0.00 36.20 2.29
392 405 4.454504 GCAATGGGTTTCTCGTAGAAGAAA 59.545 41.667 0.00 0.00 35.37 2.52
393 406 4.000988 GCAATGGGTTTCTCGTAGAAGAA 58.999 43.478 0.00 0.00 35.37 2.52
394 407 3.007506 TGCAATGGGTTTCTCGTAGAAGA 59.992 43.478 0.00 0.00 35.37 2.87
395 408 3.334691 TGCAATGGGTTTCTCGTAGAAG 58.665 45.455 0.00 0.00 35.37 2.85
396 409 3.410631 TGCAATGGGTTTCTCGTAGAA 57.589 42.857 0.00 0.00 34.09 2.10
397 410 3.627395 ATGCAATGGGTTTCTCGTAGA 57.373 42.857 0.00 0.00 0.00 2.59
398 411 4.260784 GCTAATGCAATGGGTTTCTCGTAG 60.261 45.833 0.00 0.00 39.41 3.51
399 412 3.625764 GCTAATGCAATGGGTTTCTCGTA 59.374 43.478 0.00 0.00 39.41 3.43
400 413 2.423538 GCTAATGCAATGGGTTTCTCGT 59.576 45.455 0.00 0.00 39.41 4.18
401 414 2.539547 CGCTAATGCAATGGGTTTCTCG 60.540 50.000 0.00 0.00 39.64 4.04
402 415 2.796032 GCGCTAATGCAATGGGTTTCTC 60.796 50.000 0.00 0.00 39.64 2.87
403 416 1.134946 GCGCTAATGCAATGGGTTTCT 59.865 47.619 0.00 0.00 39.64 2.52
404 417 1.134946 AGCGCTAATGCAATGGGTTTC 59.865 47.619 8.99 0.00 39.64 2.78
405 418 1.134946 GAGCGCTAATGCAATGGGTTT 59.865 47.619 11.50 0.00 39.64 3.27
406 419 0.740737 GAGCGCTAATGCAATGGGTT 59.259 50.000 11.50 0.00 39.64 4.11
407 420 1.439353 CGAGCGCTAATGCAATGGGT 61.439 55.000 11.50 0.00 39.64 4.51
408 421 1.159713 TCGAGCGCTAATGCAATGGG 61.160 55.000 11.50 0.00 39.64 4.00
409 422 0.041839 GTCGAGCGCTAATGCAATGG 60.042 55.000 11.50 0.00 39.64 3.16
410 423 0.041839 GGTCGAGCGCTAATGCAATG 60.042 55.000 11.50 0.00 39.64 2.82
411 424 0.461870 TGGTCGAGCGCTAATGCAAT 60.462 50.000 11.50 0.00 39.64 3.56
412 425 1.079474 TGGTCGAGCGCTAATGCAA 60.079 52.632 11.50 0.00 39.64 4.08
413 426 1.519234 CTGGTCGAGCGCTAATGCA 60.519 57.895 11.50 0.00 39.64 3.96
414 427 2.240500 CCTGGTCGAGCGCTAATGC 61.241 63.158 11.50 0.33 0.00 3.56
415 428 2.240500 GCCTGGTCGAGCGCTAATG 61.241 63.158 11.50 3.14 0.00 1.90
416 429 2.107141 GCCTGGTCGAGCGCTAAT 59.893 61.111 11.50 0.00 0.00 1.73
417 430 4.492160 CGCCTGGTCGAGCGCTAA 62.492 66.667 11.50 0.00 46.50 3.09
434 447 2.109126 GTCTCCTCAACGCATGGGC 61.109 63.158 10.10 0.00 0.00 5.36
435 448 1.811266 CGTCTCCTCAACGCATGGG 60.811 63.158 8.44 8.44 32.84 4.00
436 449 1.811266 CCGTCTCCTCAACGCATGG 60.811 63.158 0.00 0.00 38.77 3.66
437 450 1.078759 GTCCGTCTCCTCAACGCATG 61.079 60.000 0.00 0.00 38.77 4.06
438 451 1.215647 GTCCGTCTCCTCAACGCAT 59.784 57.895 0.00 0.00 38.77 4.73
439 452 1.863662 GAGTCCGTCTCCTCAACGCA 61.864 60.000 0.00 0.00 38.77 5.24
440 453 1.153997 GAGTCCGTCTCCTCAACGC 60.154 63.158 0.00 0.00 38.77 4.84
448 461 0.743701 TCGCTGTAGGAGTCCGTCTC 60.744 60.000 2.76 0.00 42.07 3.36
449 462 1.025647 GTCGCTGTAGGAGTCCGTCT 61.026 60.000 2.76 0.00 0.00 4.18
450 463 1.428620 GTCGCTGTAGGAGTCCGTC 59.571 63.158 2.76 1.51 0.00 4.79
451 464 2.396955 CGTCGCTGTAGGAGTCCGT 61.397 63.158 2.76 0.00 0.00 4.69
452 465 2.403987 CGTCGCTGTAGGAGTCCG 59.596 66.667 2.76 0.00 0.00 4.79
453 466 2.102553 GCGTCGCTGTAGGAGTCC 59.897 66.667 10.68 0.00 0.00 3.85
454 467 2.102553 GGCGTCGCTGTAGGAGTC 59.897 66.667 18.11 0.00 0.00 3.36
455 468 2.675423 TGGCGTCGCTGTAGGAGT 60.675 61.111 18.11 0.00 0.00 3.85
456 469 2.202623 GTGGCGTCGCTGTAGGAG 60.203 66.667 18.11 0.00 0.00 3.69
457 470 2.209064 GAAGTGGCGTCGCTGTAGGA 62.209 60.000 18.11 0.00 33.43 2.94
458 471 1.805945 GAAGTGGCGTCGCTGTAGG 60.806 63.158 18.11 0.00 33.43 3.18
459 472 0.388649 AAGAAGTGGCGTCGCTGTAG 60.389 55.000 18.11 0.00 33.43 2.74
460 473 0.032952 AAAGAAGTGGCGTCGCTGTA 59.967 50.000 18.11 1.03 33.43 2.74
461 474 0.032952 TAAAGAAGTGGCGTCGCTGT 59.967 50.000 18.11 0.00 33.43 4.40
462 475 1.144969 TTAAAGAAGTGGCGTCGCTG 58.855 50.000 18.11 0.00 33.43 5.18
463 476 2.094762 ATTAAAGAAGTGGCGTCGCT 57.905 45.000 18.11 0.00 34.81 4.93
464 477 2.894307 AATTAAAGAAGTGGCGTCGC 57.106 45.000 9.22 9.22 0.00 5.19
465 478 7.790861 AAAATTAATTAAAGAAGTGGCGTCG 57.209 32.000 1.21 0.00 0.00 5.12
488 501 5.455056 TTTGGACGCTTAGGCAATAAAAA 57.545 34.783 0.00 0.00 38.60 1.94
489 502 5.652994 ATTTGGACGCTTAGGCAATAAAA 57.347 34.783 0.00 0.00 38.60 1.52
490 503 6.679392 GCTTATTTGGACGCTTAGGCAATAAA 60.679 38.462 0.00 0.00 38.60 1.40
491 504 5.220970 GCTTATTTGGACGCTTAGGCAATAA 60.221 40.000 0.00 0.00 38.60 1.40
492 505 4.274950 GCTTATTTGGACGCTTAGGCAATA 59.725 41.667 0.00 0.00 38.60 1.90
493 506 3.066760 GCTTATTTGGACGCTTAGGCAAT 59.933 43.478 0.00 0.00 38.60 3.56
494 507 2.422127 GCTTATTTGGACGCTTAGGCAA 59.578 45.455 0.00 0.00 38.60 4.52
495 508 2.014128 GCTTATTTGGACGCTTAGGCA 58.986 47.619 0.00 0.00 38.60 4.75
496 509 1.003866 CGCTTATTTGGACGCTTAGGC 60.004 52.381 0.00 0.00 0.00 3.93
503 516 1.529826 GCAAGAGCGCTTATTTGGACG 60.530 52.381 22.98 8.50 31.81 4.79
504 517 1.468520 TGCAAGAGCGCTTATTTGGAC 59.531 47.619 22.98 13.01 46.23 4.02
505 518 1.819928 TGCAAGAGCGCTTATTTGGA 58.180 45.000 22.98 19.85 46.23 3.53
506 519 2.855963 CAATGCAAGAGCGCTTATTTGG 59.144 45.455 22.98 9.58 46.23 3.28
507 520 3.504863 ACAATGCAAGAGCGCTTATTTG 58.495 40.909 13.26 17.56 46.23 2.32
508 521 3.855689 ACAATGCAAGAGCGCTTATTT 57.144 38.095 13.26 3.91 46.23 1.40
509 522 4.191544 TCTACAATGCAAGAGCGCTTATT 58.808 39.130 13.26 7.25 46.23 1.40
510 523 3.797039 TCTACAATGCAAGAGCGCTTAT 58.203 40.909 13.26 0.00 46.23 1.73
511 524 3.245518 TCTACAATGCAAGAGCGCTTA 57.754 42.857 13.26 0.00 46.23 3.09
512 525 2.099141 TCTACAATGCAAGAGCGCTT 57.901 45.000 13.26 0.00 46.23 4.68
513 526 1.938577 CATCTACAATGCAAGAGCGCT 59.061 47.619 11.27 11.27 46.23 5.92
514 527 1.596464 GCATCTACAATGCAAGAGCGC 60.596 52.381 0.00 0.00 46.23 5.92
515 528 1.003116 GGCATCTACAATGCAAGAGCG 60.003 52.381 11.69 0.00 46.21 5.03
516 529 1.336125 GGGCATCTACAATGCAAGAGC 59.664 52.381 11.69 0.00 46.21 4.09
517 530 2.928334 AGGGCATCTACAATGCAAGAG 58.072 47.619 11.69 0.00 46.21 2.85
518 531 4.454678 CTTAGGGCATCTACAATGCAAGA 58.545 43.478 11.69 0.00 46.21 3.02
519 532 3.567164 CCTTAGGGCATCTACAATGCAAG 59.433 47.826 11.69 6.89 46.21 4.01
520 533 3.554934 CCTTAGGGCATCTACAATGCAA 58.445 45.455 11.69 0.00 46.21 4.08
521 534 2.158623 CCCTTAGGGCATCTACAATGCA 60.159 50.000 3.52 0.00 46.21 3.96
522 535 2.106511 TCCCTTAGGGCATCTACAATGC 59.893 50.000 13.54 1.40 43.94 3.56
523 536 4.437682 TTCCCTTAGGGCATCTACAATG 57.562 45.455 13.54 0.00 43.94 2.82
524 537 4.478686 ACTTTCCCTTAGGGCATCTACAAT 59.521 41.667 13.54 0.00 43.94 2.71
525 538 3.850173 ACTTTCCCTTAGGGCATCTACAA 59.150 43.478 13.54 0.00 43.94 2.41
526 539 3.199946 CACTTTCCCTTAGGGCATCTACA 59.800 47.826 13.54 0.00 43.94 2.74
527 540 3.433740 CCACTTTCCCTTAGGGCATCTAC 60.434 52.174 13.54 0.00 43.94 2.59
528 541 2.777692 CCACTTTCCCTTAGGGCATCTA 59.222 50.000 13.54 0.00 43.94 1.98
529 542 1.566231 CCACTTTCCCTTAGGGCATCT 59.434 52.381 13.54 0.00 43.94 2.90
530 543 1.410224 CCCACTTTCCCTTAGGGCATC 60.410 57.143 13.54 0.00 43.94 3.91
531 544 0.631212 CCCACTTTCCCTTAGGGCAT 59.369 55.000 13.54 0.00 43.94 4.40
532 545 1.506028 CCCCACTTTCCCTTAGGGCA 61.506 60.000 13.54 0.00 43.94 5.36
533 546 1.306633 CCCCACTTTCCCTTAGGGC 59.693 63.158 13.54 0.00 43.94 5.19
534 547 2.007576 CCCCCACTTTCCCTTAGGG 58.992 63.158 11.94 11.94 46.11 3.53
561 574 3.020984 ACCTCTCTCTTCACTCGGATTC 58.979 50.000 0.00 0.00 0.00 2.52
634 647 3.708220 GAAGAGTCTGCGCCGGGAG 62.708 68.421 4.18 0.00 0.00 4.30
668 691 2.907236 GGGAGAGGGCTCAAGCTC 59.093 66.667 1.46 0.00 43.14 4.09
669 692 3.080121 CGGGAGAGGGCTCAAGCT 61.080 66.667 1.46 0.00 43.14 3.74
670 693 3.077556 TCGGGAGAGGGCTCAAGC 61.078 66.667 0.00 0.00 43.14 4.01
671 694 2.896443 GTCGGGAGAGGGCTCAAG 59.104 66.667 0.00 0.00 43.14 3.02
672 695 3.068691 CGTCGGGAGAGGGCTCAA 61.069 66.667 0.00 0.00 43.14 3.02
679 702 1.677966 TCCTTGGACGTCGGGAGAG 60.678 63.158 16.09 7.18 41.26 3.20
680 703 1.975407 GTCCTTGGACGTCGGGAGA 60.975 63.158 19.14 8.01 0.00 3.71
681 704 2.572284 GTCCTTGGACGTCGGGAG 59.428 66.667 19.14 12.32 0.00 4.30
682 705 3.367743 CGTCCTTGGACGTCGGGA 61.368 66.667 27.99 16.09 42.91 5.14
694 717 2.590575 CCGTTTGCCACACGTCCT 60.591 61.111 2.43 0.00 35.81 3.85
787 810 0.864377 CTCATACGTACGCACCACCG 60.864 60.000 16.72 0.00 0.00 4.94
803 826 1.079819 CGAGGAAAGGAAGCGCTCA 60.080 57.895 12.06 0.00 0.00 4.26
808 831 0.453390 CAATGGCGAGGAAAGGAAGC 59.547 55.000 0.00 0.00 0.00 3.86
887 912 7.398618 AGCCAGTCGGTACTATATAGAGTAGTA 59.601 40.741 16.79 0.00 34.43 1.82
907 937 3.914426 ACGAAATTATCAGGAGCCAGT 57.086 42.857 0.00 0.00 0.00 4.00
937 967 1.204704 CTCGATCTGTTGGTGCTGGTA 59.795 52.381 0.00 0.00 0.00 3.25
947 981 2.383855 CTCTTCTCCCCTCGATCTGTT 58.616 52.381 0.00 0.00 0.00 3.16
979 1013 3.867226 TTGAGTCGTCGACGGTGCG 62.867 63.158 35.05 12.18 37.67 5.34
989 1023 0.670546 CTTGGCCATCGTTGAGTCGT 60.671 55.000 6.09 0.00 0.00 4.34
990 1024 1.970917 GCTTGGCCATCGTTGAGTCG 61.971 60.000 6.09 0.00 0.00 4.18
991 1025 1.796796 GCTTGGCCATCGTTGAGTC 59.203 57.895 6.09 0.00 0.00 3.36
992 1026 2.034879 CGCTTGGCCATCGTTGAGT 61.035 57.895 6.09 0.00 0.00 3.41
1057 1097 2.047274 GTAGAGGTGCTTGCGCCA 60.047 61.111 24.52 3.97 34.43 5.69
1267 1313 1.388547 AGCTGTTTCTTGTTGGCGAA 58.611 45.000 0.00 0.00 0.00 4.70
1284 1330 2.338620 GTTGCGTTGGGGGAAAGC 59.661 61.111 0.00 0.00 39.31 3.51
1299 1345 2.762459 TAGATGAGGGCGCCGGTT 60.762 61.111 22.54 8.62 0.00 4.44
1394 1447 3.419759 CGTCCTTGGTTTCGCCGG 61.420 66.667 0.00 0.00 41.21 6.13
1403 1456 1.374252 CGTCCCTTGTCGTCCTTGG 60.374 63.158 0.00 0.00 0.00 3.61
1464 1526 2.398554 CGGGTGGTTTGATCTGCCG 61.399 63.158 0.00 0.00 0.00 5.69
1677 1739 2.266055 CAACCCCTGCCTCTCGTC 59.734 66.667 0.00 0.00 0.00 4.20
1697 1759 4.764771 AGTAGGTGCCCGCGGGTA 62.765 66.667 42.53 37.96 37.65 3.69
1791 1853 2.420890 CAGGCATCGAGCTCCCTC 59.579 66.667 8.47 0.00 44.79 4.30
1822 1884 0.249238 CAGCAGATGTAGCCGTCCTC 60.249 60.000 0.00 0.00 0.00 3.71
1874 1942 2.119611 TCTTCCTCCACTCCGGCA 59.880 61.111 0.00 0.00 33.14 5.69
1898 1966 2.262915 CCTCGCGGAACAGCTTCT 59.737 61.111 6.13 0.00 34.40 2.85
1899 1967 2.815647 CCCTCGCGGAACAGCTTC 60.816 66.667 6.13 0.00 34.40 3.86
2206 2277 6.263168 ACAGGGCAACAATATTATCTGCTTAC 59.737 38.462 12.65 6.51 39.74 2.34
2207 2278 6.364701 ACAGGGCAACAATATTATCTGCTTA 58.635 36.000 12.65 0.00 39.74 3.09
2208 2279 5.203528 ACAGGGCAACAATATTATCTGCTT 58.796 37.500 12.65 3.17 39.74 3.91
2210 2281 4.022849 GGACAGGGCAACAATATTATCTGC 60.023 45.833 6.93 6.93 39.74 4.26
2212 2283 5.133221 GTGGACAGGGCAACAATATTATCT 58.867 41.667 0.00 0.00 39.74 1.98
2213 2284 4.887071 TGTGGACAGGGCAACAATATTATC 59.113 41.667 0.00 0.00 39.74 1.75
2214 2285 4.865905 TGTGGACAGGGCAACAATATTAT 58.134 39.130 0.00 0.00 39.74 1.28
2215 2286 4.308526 TGTGGACAGGGCAACAATATTA 57.691 40.909 0.00 0.00 39.74 0.98
2217 2288 2.897271 TGTGGACAGGGCAACAATAT 57.103 45.000 0.00 0.00 39.74 1.28
2218 2289 2.666272 TTGTGGACAGGGCAACAATA 57.334 45.000 0.00 0.00 39.74 1.90
2219 2290 1.619827 CATTGTGGACAGGGCAACAAT 59.380 47.619 1.91 1.91 42.45 2.71
2220 2291 1.039068 CATTGTGGACAGGGCAACAA 58.961 50.000 0.00 0.00 36.98 2.83
2221 2292 0.106268 ACATTGTGGACAGGGCAACA 60.106 50.000 0.00 0.00 39.74 3.33
2222 2293 1.904287 TACATTGTGGACAGGGCAAC 58.096 50.000 0.00 0.00 0.00 4.17
2224 2295 2.040947 TGAATACATTGTGGACAGGGCA 59.959 45.455 0.00 0.00 0.00 5.36
2225 2296 2.684881 CTGAATACATTGTGGACAGGGC 59.315 50.000 0.00 0.00 0.00 5.19
2226 2297 4.220693 TCTGAATACATTGTGGACAGGG 57.779 45.455 0.00 0.00 0.00 4.45
2227 2298 5.473162 TGTTTCTGAATACATTGTGGACAGG 59.527 40.000 0.00 0.00 0.00 4.00
2228 2299 6.558771 TGTTTCTGAATACATTGTGGACAG 57.441 37.500 0.00 6.16 0.00 3.51
2229 2300 6.942005 AGATGTTTCTGAATACATTGTGGACA 59.058 34.615 14.76 4.07 35.24 4.02
2233 2304 8.509690 AGACAAGATGTTTCTGAATACATTGTG 58.490 33.333 18.38 17.44 35.24 3.33
2471 2567 4.512484 CTTTTGGGCCTTTTGTTTCTTGA 58.488 39.130 4.53 0.00 0.00 3.02
2534 2630 4.412843 TGGCGGTCATGTAATAGGATAGA 58.587 43.478 0.00 0.00 0.00 1.98
2608 2704 1.373497 GATGGGAGATGGTAGCGCG 60.373 63.158 0.00 0.00 0.00 6.86
2610 2706 0.320247 GCTGATGGGAGATGGTAGCG 60.320 60.000 0.00 0.00 0.00 4.26
2611 2707 0.320247 CGCTGATGGGAGATGGTAGC 60.320 60.000 0.00 0.00 0.00 3.58
2612 2708 0.320247 GCGCTGATGGGAGATGGTAG 60.320 60.000 0.00 0.00 0.00 3.18
2613 2709 1.048160 TGCGCTGATGGGAGATGGTA 61.048 55.000 9.73 0.00 0.00 3.25
2614 2710 1.913951 TTGCGCTGATGGGAGATGGT 61.914 55.000 9.73 0.00 0.00 3.55
2615 2711 0.536687 ATTGCGCTGATGGGAGATGG 60.537 55.000 9.73 0.00 0.00 3.51
2616 2712 2.074576 CTATTGCGCTGATGGGAGATG 58.925 52.381 9.73 0.00 0.00 2.90
2618 2714 0.250038 GCTATTGCGCTGATGGGAGA 60.250 55.000 9.73 0.00 0.00 3.71
2619 2715 0.250209 AGCTATTGCGCTGATGGGAG 60.250 55.000 9.73 0.00 45.42 4.30
2620 2716 0.250038 GAGCTATTGCGCTGATGGGA 60.250 55.000 9.73 0.00 45.42 4.37
2621 2717 1.563435 CGAGCTATTGCGCTGATGGG 61.563 60.000 9.73 2.36 45.42 4.00
2843 2975 1.950909 CCCGTTGGCAAGAGTTTTGTA 59.049 47.619 0.00 0.00 0.00 2.41
2927 3059 1.681538 TTGGTTAAGCGCAACTGGAA 58.318 45.000 11.47 0.00 0.00 3.53
3041 3173 5.675538 GCCATTAACTCTAGTGTCATTCCT 58.324 41.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.